Query 021301
Match_columns 314
No_of_seqs 224 out of 1535
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00012 chlorophyll synthetas 100.0 2.8E-52 6E-57 401.6 29.6 293 21-313 20-314 (375)
2 PRK07566 bacteriochlorophyll/c 100.0 5.6E-42 1.2E-46 324.6 26.7 241 65-312 8-250 (314)
3 TIGR02056 ChlG chlorophyll syn 100.0 4.2E-42 9.1E-47 324.4 25.5 243 70-312 1-244 (306)
4 TIGR01476 chlor_syn_BchG bacte 100.0 7.1E-39 1.5E-43 299.3 23.7 222 85-312 1-222 (283)
5 PRK12392 bacteriochlorophyll c 100.0 8.1E-36 1.8E-40 283.7 26.4 230 81-311 9-240 (331)
6 PRK13387 1,4-dihydroxy-2-napht 100.0 7.1E-35 1.5E-39 276.2 24.1 220 83-312 2-250 (317)
7 PRK12887 ubiA tocopherol phyty 100.0 4.3E-35 9.4E-40 276.6 22.6 225 81-312 10-243 (308)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 8.6E-35 1.9E-39 272.9 24.4 220 83-312 2-229 (293)
9 PRK05951 ubiA prenyltransferas 100.0 8.5E-35 1.8E-39 273.5 24.1 220 82-312 2-231 (296)
10 PRK07419 1,4-dihydroxy-2-napht 100.0 1.1E-33 2.4E-38 266.2 25.2 223 78-312 6-235 (304)
11 PRK09573 (S)-2,3-di-O-geranylg 100.0 8.8E-34 1.9E-38 264.5 21.9 209 83-307 2-210 (279)
12 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.7E-33 5.9E-38 261.5 22.8 214 92-312 1-225 (284)
13 PRK12884 ubiA prenyltransferas 100.0 2.7E-33 5.9E-38 260.9 22.3 211 82-309 2-213 (279)
14 PLN02922 prenyltransferase 100.0 6.5E-33 1.4E-37 262.3 25.1 223 79-312 10-249 (315)
15 PRK12882 ubiA prenyltransferas 100.0 2.6E-33 5.6E-38 260.9 21.8 211 83-307 3-213 (276)
16 TIGR01475 ubiA_other putative 100.0 3.5E-33 7.5E-38 260.9 22.2 211 83-310 1-217 (282)
17 PRK13595 ubiA prenyltransferas 100.0 6.9E-33 1.5E-37 257.7 23.7 223 79-312 7-230 (292)
18 PRK12874 ubiA prenyltransferas 100.0 1.1E-32 2.3E-37 258.5 23.1 209 81-306 5-222 (291)
19 PRK12847 ubiA 4-hydroxybenzoat 100.0 1.8E-32 3.9E-37 256.5 23.6 215 81-310 4-224 (285)
20 PRK12883 ubiA prenyltransferas 100.0 2.1E-32 4.5E-37 255.0 23.0 204 83-303 2-206 (277)
21 PRK12886 ubiA prenyltransferas 100.0 3.9E-32 8.5E-37 254.8 24.5 210 82-308 6-219 (291)
22 TIGR02235 menA_cyano-plnt 1,4- 100.0 4.4E-32 9.5E-37 253.6 23.9 214 87-312 2-222 (285)
23 PRK12888 ubiA prenyltransferas 100.0 2.8E-32 6.1E-37 254.9 22.4 210 83-309 1-217 (284)
24 COG1575 MenA 1,4-dihydroxy-2-n 100.0 5.6E-32 1.2E-36 250.6 23.9 224 80-313 4-238 (303)
25 PRK12869 ubiA protoheme IX far 100.0 1.4E-31 3E-36 249.7 25.3 207 83-306 1-214 (279)
26 PRK12895 ubiA prenyltransferas 100.0 4.3E-32 9.3E-37 253.3 21.8 211 83-308 2-216 (286)
27 PRK04375 protoheme IX farnesyl 100.0 1.2E-31 2.6E-36 252.2 24.3 210 79-304 5-220 (296)
28 PRK12878 ubiA 4-hydroxybenzoat 100.0 7.2E-32 1.6E-36 255.4 23.0 214 81-309 27-250 (314)
29 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.9E-31 4.1E-36 249.2 23.3 205 81-302 2-213 (282)
30 PRK13106 ubiA prenyltransferas 100.0 1.7E-31 3.8E-36 251.0 22.4 211 81-309 12-234 (300)
31 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.4E-31 3.1E-36 250.9 21.6 204 81-301 6-216 (290)
32 TIGR01474 ubiA_proteo 4-hydrox 100.0 3E-31 6.5E-36 247.8 22.2 203 87-303 7-212 (281)
33 PRK13105 ubiA prenyltransferas 100.0 6.3E-31 1.4E-35 244.9 23.3 219 84-312 1-221 (282)
34 PRK13362 protoheme IX farnesyl 100.0 7.8E-31 1.7E-35 247.4 24.2 208 79-301 8-220 (306)
35 TIGR01473 cyoE_ctaB protoheme 100.0 8.5E-31 1.8E-35 244.5 22.5 204 85-302 1-209 (280)
36 COG0382 UbiA 4-hydroxybenzoate 100.0 1.8E-30 3.8E-35 243.4 21.6 208 82-305 11-221 (289)
37 PLN02809 4-hydroxybenzoate non 100.0 3.8E-30 8.2E-35 241.0 22.6 209 82-308 4-222 (289)
38 PLN02878 homogentisate phytylt 100.0 7.7E-30 1.7E-34 234.9 18.3 181 124-310 25-215 (280)
39 PRK12871 ubiA prenyltransferas 100.0 4.3E-29 9.2E-34 234.7 23.4 215 82-312 3-236 (297)
40 PRK12873 ubiA prenyltransferas 100.0 4.3E-29 9.4E-34 233.6 22.8 204 81-297 4-216 (294)
41 PRK12876 ubiA prenyltransferas 100.0 6.3E-29 1.4E-33 232.6 21.6 212 82-307 2-228 (300)
42 PRK12875 ubiA prenyltransferas 100.0 1.1E-27 2.3E-32 223.5 24.1 217 80-311 4-225 (282)
43 PRK12872 ubiA prenyltransferas 100.0 9.4E-28 2E-32 224.2 20.2 218 83-312 3-222 (285)
44 COG0109 CyoE Polyprenyltransfe 100.0 8E-28 1.7E-32 222.5 15.2 207 80-300 14-224 (304)
45 PF01040 UbiA: UbiA prenyltran 99.9 4.4E-27 9.6E-32 214.6 16.3 188 97-298 2-193 (257)
46 PLN02776 prenyltransferase 99.9 1.9E-25 4.1E-30 212.2 23.3 195 90-301 1-203 (341)
47 PRK13591 ubiA prenyltransferas 99.9 3.3E-24 7.1E-29 200.6 19.6 167 132-312 68-240 (307)
48 PRK13592 ubiA prenyltransferas 99.9 4.8E-23 1E-27 191.3 16.2 167 124-308 49-230 (299)
49 PRK12324 phosphoribose diphosp 99.9 1.1E-21 2.5E-26 183.9 19.8 185 81-280 8-196 (295)
50 KOG1381 Para-hydroxybenzoate-p 99.9 1.9E-22 4.2E-27 182.3 11.4 210 79-302 59-275 (353)
51 PRK08238 hypothetical protein; 99.9 2.1E-20 4.6E-25 186.0 22.7 188 80-284 187-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.8 1.3E-19 2.8E-24 167.5 7.8 211 82-309 92-310 (409)
53 KOG4581 Predicted membrane pro 99.7 2.1E-18 4.5E-23 153.1 2.9 237 68-311 45-289 (359)
54 PRK13591 ubiA prenyltransferas 93.4 0.38 8.3E-06 45.8 8.3 72 140-216 197-273 (307)
55 PRK12888 ubiA prenyltransferas 92.7 1.2 2.6E-05 41.8 10.6 32 131-162 168-200 (284)
56 COG1575 MenA 1,4-dihydroxy-2-n 92.0 2.2 4.7E-05 40.5 11.2 42 134-177 188-229 (303)
57 TIGR02056 ChlG chlorophyll syn 92.0 2 4.4E-05 40.7 11.2 39 134-175 195-234 (306)
58 PLN00012 chlorophyll synthetas 91.9 1.6 3.6E-05 42.7 10.7 30 134-163 264-294 (375)
59 PRK12875 ubiA prenyltransferas 91.4 7.8 0.00017 36.4 14.3 53 130-185 173-226 (282)
60 PRK12392 bacteriochlorophyll c 91.3 2.6 5.6E-05 40.6 11.2 41 133-176 191-232 (331)
61 PRK12872 ubiA prenyltransferas 90.6 1.8 3.8E-05 40.3 9.2 43 135-180 174-217 (285)
62 PRK12874 ubiA prenyltransferas 90.5 5.1 0.00011 37.8 12.3 33 131-163 176-209 (291)
63 PRK13592 ubiA prenyltransferas 90.4 2.2 4.7E-05 40.5 9.5 56 252-308 47-105 (299)
64 TIGR02235 menA_cyano-plnt 1,4- 90.4 3.7 8E-05 38.6 11.2 46 134-182 173-219 (285)
65 PRK07419 1,4-dihydroxy-2-napht 90.2 4 8.7E-05 38.8 11.3 44 134-180 186-230 (304)
66 PRK12847 ubiA 4-hydroxybenzoat 89.9 2.2 4.7E-05 40.0 9.2 34 130-163 173-207 (285)
67 TIGR01475 ubiA_other putative 89.9 2.9 6.3E-05 39.0 10.0 31 132-162 168-199 (282)
68 TIGR01476 chlor_syn_BchG bacte 89.8 5 0.00011 37.4 11.6 38 135-175 174-212 (283)
69 PRK07566 bacteriochlorophyll/c 89.7 4.9 0.00011 38.3 11.6 29 134-162 201-230 (314)
70 PRK12895 ubiA prenyltransferas 88.5 2.2 4.7E-05 40.3 8.1 35 128-162 165-200 (286)
71 TIGR01474 ubiA_proteo 4-hydrox 88.3 3.8 8.1E-05 38.3 9.5 34 130-163 168-202 (281)
72 TIGR00751 menA 1,4-dihydroxy-2 87.3 8.3 0.00018 36.2 11.2 44 135-180 177-220 (284)
73 PRK06080 1,4-dihydroxy-2-napht 87.1 6.4 0.00014 36.8 10.4 47 133-182 179-226 (293)
74 PRK12884 ubiA prenyltransferas 87.1 3.8 8.2E-05 38.0 8.8 46 257-303 43-91 (279)
75 PRK12871 ubiA prenyltransferas 86.9 6 0.00013 37.5 10.1 32 132-163 185-217 (297)
76 PRK12870 ubiA 4-hydroxybenzoat 86.9 5 0.00011 37.7 9.5 34 130-163 174-208 (290)
77 PLN02922 prenyltransferase 85.8 4.7 0.0001 38.5 8.8 45 134-180 200-244 (315)
78 PRK13106 ubiA prenyltransferas 85.5 3.4 7.4E-05 39.2 7.7 51 130-184 185-236 (300)
79 PRK13387 1,4-dihydroxy-2-napht 85.3 5.5 0.00012 38.0 9.1 45 134-181 201-246 (317)
80 PRK12886 ubiA prenyltransferas 85.1 10 0.00022 35.7 10.6 32 132-163 172-204 (291)
81 COG3476 Tryptophan-rich sensor 84.8 25 0.00054 30.4 13.6 120 136-264 21-143 (161)
82 PRK13105 ubiA prenyltransferas 83.9 5.4 0.00012 37.5 8.2 50 134-186 172-222 (282)
83 PRK12882 ubiA prenyltransferas 83.8 9.7 0.00021 35.3 9.8 39 133-174 168-207 (276)
84 PRK12324 phosphoribose diphosp 81.7 6.4 0.00014 37.3 7.8 47 259-305 54-104 (295)
85 PRK12878 ubiA 4-hydroxybenzoat 81.7 13 0.00028 35.5 9.9 34 130-163 200-234 (314)
86 PRK12848 ubiA 4-hydroxybenzoat 80.6 15 0.00033 34.3 9.9 34 130-163 170-204 (282)
87 PRK12873 ubiA prenyltransferas 79.5 19 0.0004 34.2 10.1 58 101-163 153-212 (294)
88 PRK12887 ubiA tocopherol phyty 79.3 9 0.0002 36.4 8.0 36 133-171 193-229 (308)
89 PF01040 UbiA: UbiA prenyltran 77.6 11 0.00024 33.8 7.7 49 246-294 17-67 (257)
90 PRK05951 ubiA prenyltransferas 77.4 25 0.00053 33.1 10.3 32 135-169 184-216 (296)
91 COG0382 UbiA 4-hydroxybenzoate 77.3 21 0.00045 33.4 9.7 42 130-174 175-217 (289)
92 PLN02809 4-hydroxybenzoate non 76.7 41 0.0009 31.6 11.6 32 132-163 176-208 (289)
93 PRK13595 ubiA prenyltransferas 74.4 52 0.0011 31.2 11.5 50 135-187 182-232 (292)
94 PRK04375 protoheme IX farnesyl 74.1 17 0.00036 34.2 8.2 57 248-304 40-101 (296)
95 PRK09573 (S)-2,3-di-O-geranylg 73.9 17 0.00038 33.7 8.2 49 258-307 44-95 (279)
96 PRK12869 ubiA protoheme IX far 73.9 17 0.00038 33.8 8.2 56 248-303 32-92 (279)
97 PRK12883 ubiA prenyltransferas 73.5 19 0.00042 33.3 8.4 43 261-304 47-92 (277)
98 PRK13362 protoheme IX farnesyl 72.2 17 0.00037 34.5 7.8 55 247-301 42-101 (306)
99 TIGR01473 cyoE_ctaB protoheme 68.8 29 0.00063 32.2 8.5 50 258-307 42-95 (280)
100 PRK12876 ubiA prenyltransferas 66.7 62 0.0013 30.8 10.2 26 137-162 187-213 (300)
101 PRK08238 hypothetical protein; 64.0 26 0.00055 35.5 7.5 47 259-305 234-284 (479)
102 COG0142 IspA Geranylgeranyl py 60.4 70 0.0015 30.5 9.5 37 262-298 205-252 (322)
103 KOG3146 Dolichyl pyrophosphate 57.2 87 0.0019 28.3 8.7 38 209-249 142-179 (228)
104 cd00685 Trans_IPPS_HT Trans-Is 55.9 1.4E+02 0.0031 27.2 10.5 34 261-294 179-223 (259)
105 PLN02878 homogentisate phytylt 51.5 77 0.0017 29.9 7.9 35 136-173 170-205 (280)
106 PLN02890 geranyl diphosphate s 42.7 3.1E+02 0.0067 27.4 11.1 150 133-291 172-339 (422)
107 PRK10581 geranyltranstransfera 40.9 71 0.0015 30.2 6.0 41 261-301 213-264 (299)
108 PF11990 DUF3487: Protein of u 39.6 1.1E+02 0.0025 25.0 6.3 40 149-190 8-47 (121)
109 TIGR03750 conj_TIGR03750 conju 39.0 1.2E+02 0.0027 24.5 6.3 37 149-187 5-41 (111)
110 cd00867 Trans_IPPS Trans-Isopr 36.7 19 0.00041 32.1 1.4 35 262-296 157-201 (236)
111 TIGR02762 TraL_TIGR type IV co 35.8 1.1E+02 0.0023 23.9 5.4 32 150-185 7-38 (95)
112 PLN02776 prenyltransferase 34.9 4.3E+02 0.0093 25.6 11.8 28 155-182 185-214 (341)
113 PF12670 DUF3792: Protein of u 34.1 2.4E+02 0.0053 22.5 8.2 48 198-247 43-90 (116)
114 PF00348 polyprenyl_synt: Poly 33.3 59 0.0013 29.8 4.1 66 232-297 147-223 (260)
115 cd00685 Trans_IPPS_HT Trans-Is 32.3 1.4E+02 0.0031 27.1 6.5 58 252-310 40-97 (259)
116 TIGR02748 GerC3_HepT heptapren 32.3 63 0.0014 30.7 4.3 63 232-294 171-244 (319)
117 COG5336 Uncharacterized protei 30.8 1.7E+02 0.0036 23.7 5.7 20 174-193 53-72 (116)
118 COG0142 IspA Geranylgeranyl py 30.8 99 0.0021 29.5 5.3 57 254-311 69-125 (322)
119 CHL00151 preA prenyl transfera 27.2 82 0.0018 30.0 4.1 33 262-294 206-249 (323)
120 PF12046 DUF3529: Protein of u 26.3 1.5E+02 0.0033 25.9 5.1 13 156-168 68-80 (173)
121 TIGR02840 spore_YtaF putative 25.8 4.7E+02 0.01 23.2 11.7 25 160-184 122-146 (206)
122 TIGR02749 prenyl_cyano solanes 25.5 1.1E+02 0.0025 29.1 4.8 63 232-294 175-248 (322)
123 KOG4112 Signal peptidase subun 24.3 2.2E+02 0.0049 22.4 5.2 20 203-222 57-76 (101)
124 PF09933 DUF2165: Predicted sm 20.8 5.5E+02 0.012 22.1 10.8 42 136-178 18-70 (160)
125 COG2149 Predicted membrane pro 20.7 3.7E+02 0.0081 22.0 6.0 24 136-161 70-93 (120)
No 1
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=2.8e-52 Score=401.64 Aligned_cols=293 Identities=84% Similarity=1.378 Sum_probs=257.0
Q ss_pred cccccCCCCcccccccccceeeeccCCCCCCCCCCCCCCCC--CCCCcchhhhhhcccccccchhHHHHHhhhCcchhHH
Q 021301 21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAP--AASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP 98 (314)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~ 98 (314)
+.+++...++.+...++||..+|++++|++++++++|++++ .++++.+|||+|+||+++|++++|+|++++||++|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~ 99 (375)
T PLN00012 20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP 99 (375)
T ss_pred hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence 44555566677778889999999999999999999988844 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHH
Q 021301 99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (314)
Q Consensus 99 ~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~ 178 (314)
.++++++|++..++++|...++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++.++.++.+
T Consensus 100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence 99999999998777777543333445677778888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 021301 179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258 (314)
Q Consensus 179 l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l 258 (314)
+++.+++++..+.++.+|..+.+++++++++++||.||+++||++++|++.+|..++.+|++++++++|.+++..+++++
T Consensus 180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal 259 (375)
T PLN00012 180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL 259 (375)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888877755544446777888888888999999999999999999999999999988887777888999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhhc
Q 021301 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313 (314)
Q Consensus 259 ~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~~ 313 (314)
++++|.+++++.||++|+|+|+++|++|+|+++|.+++++++..++.+.++++++
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~ 314 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAG 314 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777777766553
No 2
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=5.6e-42 Score=324.61 Aligned_cols=241 Identities=56% Similarity=0.955 Sum_probs=205.7
Q ss_pred CcchhhhhhcccccccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcch
Q 021301 65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144 (314)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~ 144 (314)
.+.-||++|-||++++++++|.|++++||++|..++++.++|+...+.+++........+++++++++++++++|++|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~ 87 (314)
T PRK07566 8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY 87 (314)
T ss_pred ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45569999999999999999999999999999999999999988776665543112223345556777889999999999
Q ss_pred hcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccc
Q 021301 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW 224 (314)
Q Consensus 145 ~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~ 224 (314)
+|+|+|++|+|+||+++|++++++++.++.++.++++.+++++ ++....+++++.+++++||.||+++||+++
T Consensus 88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~ 160 (314)
T PRK07566 88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW 160 (314)
T ss_pred hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 9999999999999999999999999999988888888887765 345667777788889999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 225 IGNFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 225 ~g~l~vg~~~~~lp~l~~~a~~--g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
+||+.+|+.++.+|+++++... +..++..++.+++++++..++++.||++|+|+|+++|+||+|+++|++++++++..
T Consensus 161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~ 240 (314)
T PRK07566 161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV 240 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence 8999999988888766654333 36788888888888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhh
Q 021301 303 AIDITQISVA 312 (314)
Q Consensus 303 li~l~~l~v~ 312 (314)
++.+.++.++
T Consensus 241 l~~~~~~~~~ 250 (314)
T PRK07566 241 VIDLFQLAVI 250 (314)
T ss_pred HHHHHHHHHH
Confidence 8887777653
No 3
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=4.2e-42 Score=324.40 Aligned_cols=243 Identities=80% Similarity=1.369 Sum_probs=211.6
Q ss_pred hhhhccccc-ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc
Q 021301 70 QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE 148 (314)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~ 148 (314)
|+.+.||.. ++++++|+|++++||++|..+++++++|+...++++|...+....++++++++.++++++|.+|||+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d 80 (306)
T TIGR02056 1 QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD 80 (306)
T ss_pred CCCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 456677777 7778999999999999999999999999988777776542222234455566788899999999999999
Q ss_pred ccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhH
Q 021301 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF 228 (314)
Q Consensus 149 ~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l 228 (314)
.|+.|+|+||+++|++++++++.+++.+.++++++++++..+.+..++.++.+++++++++++||.||+++||++++|++
T Consensus 81 ~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i 160 (306)
T TIGR02056 81 IDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNF 160 (306)
T ss_pred hhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence 99999999999999999999999999999999999988765554335677888888999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 229 ALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 229 ~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
.+|..++.+|++++++.+|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..++
T Consensus 161 ~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~ 240 (306)
T TIGR02056 161 ALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHH
Confidence 99999888888877777899999998999999999999999999999999999999999999999999999998888777
Q ss_pred HHhh
Q 021301 309 ISVA 312 (314)
Q Consensus 309 l~v~ 312 (314)
+.++
T Consensus 241 ~~~~ 244 (306)
T TIGR02056 241 GLIA 244 (306)
T ss_pred HHHH
Confidence 6554
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=7.1e-39 Score=299.31 Aligned_cols=222 Identities=49% Similarity=0.776 Sum_probs=188.8
Q ss_pred HHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccccc
Q 021301 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 164 (314)
Q Consensus 85 ~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~i 164 (314)
|+|++++||+++..++++.++|...++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i 80 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII 80 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence 46899999999999999999999876322111112333455566688889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 021301 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA 244 (314)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a 244 (314)
|+++++.++.++.+++++++++++ ++....+++++.+.+++||.||+++||++++|++.+|++++.+|+.+++.
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887764 33336677778888999999999999999889999999888888777666
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 245 ~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
..+.+++..++.+++++++..++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 222 (283)
T TIGR01476 155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI 222 (283)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888999999999999999999999999999999999999999999888888776554
No 5
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=8.1e-36 Score=283.68 Aligned_cols=230 Identities=36% Similarity=0.585 Sum_probs=183.6
Q ss_pred chhHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCc
Q 021301 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI 159 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl 159 (314)
++++|+|++++||++++ .+++.++|...+ +........+...+.++++.+.+..+++|++|||+|+|+|++|+|+||+
T Consensus 9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl 87 (331)
T PRK12392 9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPI 87 (331)
T ss_pred hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCC
Confidence 46799999999998888 666666666554 3221111111112233344555666778999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (314)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~-~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp 238 (314)
++|++|+++++.++.++.+++++++++++...+. ..+..+..++++.+++++||.||+++||+++.++..+|+.++..+
T Consensus 88 ~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~ 167 (331)
T PRK12392 88 PSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFIT 167 (331)
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654321 123334455677889999999999999999889999999998888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (314)
Q Consensus 239 ~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v 311 (314)
+.++.+..|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|++++.++....+.++.+..
T Consensus 168 ~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~ 240 (331)
T PRK12392 168 FLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF 240 (331)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888999999999999999999999999999999999999988877775665544
No 6
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=7.1e-35 Score=276.19 Aligned_cols=220 Identities=16% Similarity=0.141 Sum_probs=187.1
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC----
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---- 154 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~---- 154 (314)
++|.|++++||+++..++.|+++|.+.+ +.+++.. .+..+++..++|+++|.+|||+|++.|..++
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~------~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~ 75 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL------FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG 75 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence 4789999999999999999999998754 3455531 3334456677899999999999997554443
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHH
Q 021301 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (314)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~ 234 (314)
++|++++|.+++++++..++.++.++++++.++.... ++..+.+++++.+.+++||.||+++||+|+ ||+.++..+
T Consensus 76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~ 151 (317)
T PRK13387 76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM 151 (317)
T ss_pred CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence 7899999999999999999999999999998887655 466788899999999999999999999996 999999999
Q ss_pred HHHHHHH-HHHhhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEech
Q 021301 235 ISLPWWA-GQALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (314)
Q Consensus 235 ~~lp~l~-~~a~~g~~~~~~ll--------------------l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~ 293 (314)
|...+.+ ++.+++..++..+. .+++.++...++++.||++|+|+|+++|+||+|+++|+
T Consensus 152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~ 231 (317)
T PRK13387 152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR 231 (317)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence 8776554 46777777766554 78899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 021301 294 ETAKWICVGAIDITQISVA 312 (314)
Q Consensus 294 ~~a~~l~~~li~l~~l~v~ 312 (314)
|++++++..++.++|+.++
T Consensus 232 ~~a~~l~~~l~~~a~l~~~ 250 (317)
T PRK13387 232 EKGVVLFAILFYASYLAIA 250 (317)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 9999999999999888654
No 7
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=4.3e-35 Score=276.63 Aligned_cols=225 Identities=19% Similarity=0.181 Sum_probs=175.7
Q ss_pred chhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCC
Q 021301 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rp 158 (314)
+..++.|++++||++.+.+.++...++..+. .........+...+..+++..+.+.+.+.+|||+|+|+|++|+|+||
T Consensus 10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rP 89 (308)
T PRK12887 10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLP 89 (308)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCC
Confidence 3567999999999999999998887765431 11111000112223333333334444455999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp 238 (314)
+++|++|+++++....++.++++++++.+ ++..+.+++++.+++++||.||+|+||+++++++.++...+..+
T Consensus 90 iasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~ 162 (308)
T PRK12887 90 LAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIV 162 (308)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHH
Confidence 99999999999998888888888888765 35567788889999999999999999999988887665555554
Q ss_pred HHHHHH-------hhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301 239 WWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (314)
Q Consensus 239 ~l~~~a-------~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v 311 (314)
.++.+. ..+.+++..++++++.++|++++++.||++|+|+|++.|+||+|+++|++++.+++..++.++|+..
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~ 242 (308)
T PRK12887 163 NLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGM 242 (308)
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 443221 1224667778888899999999999999999999999999999999999999999999999998876
Q ss_pred h
Q 021301 312 A 312 (314)
Q Consensus 312 ~ 312 (314)
+
T Consensus 243 i 243 (308)
T PRK12887 243 I 243 (308)
T ss_pred H
Confidence 5
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=8.6e-35 Score=272.89 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=187.6
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHh---CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcc--ccccc--CCC
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP 155 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a---g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~--~~D~~--n~~ 155 (314)
++|.|++++||+++..+++++++|...+ +.+++. ..+ ..+++..++++++|.+|||+|+ |+|+. ++|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~~l-l~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~ 75 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----LAL-LALLAALLLQIATNLANDYGDYVKGTDTEDRVGP 75 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----HHH-HHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence 4789999999999999999999998765 445542 223 3345667889999999999999 56754 558
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (314)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~ 235 (314)
+||+++|++|+++++..++.+.++++++++++.... ++..+.+++++.+++++||.||.++|++++ ||+.+++.+|
T Consensus 76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G 151 (293)
T PRK06080 76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG 151 (293)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence 999999999999999999999988888887775543 455677888888899999999999999987 8999999888
Q ss_pred HHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 236 ~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
.+...+ ++.+.|.+++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~ 229 (293)
T PRK06080 152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIV 229 (293)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHH
Confidence 765554 46777889999999999999999999999999999999999999999999999999999999999998764
No 9
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.5e-35 Score=273.50 Aligned_cols=220 Identities=19% Similarity=0.158 Sum_probs=182.9
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC---
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--- 154 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--- 154 (314)
+++|.|++++||+++..++.++++|.+.+ ++++|.. .+.++++..++++++|.+|||+|++.|..++
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~------~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL------GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 47899999999999999999999997653 4566532 3334467778999999999999965444443
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (314)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~ 232 (314)
|+||+++|++|+++++..+.++..+++.++.++.... ++..+.+++++.++++.||.||+++||+++ ||+.+++
T Consensus 76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~ 151 (296)
T PRK05951 76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY 151 (296)
T ss_pred CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence 7899999999999999999888888887776654432 455778888899999999999999999987 8999999
Q ss_pred HHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301 233 SYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (314)
Q Consensus 233 ~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v 311 (314)
.++.+.+++ ++.++|.+++..++.+++.++++..+.+.||++|+|+|+++|+||+|+++|+|++ +++..++.++|+.+
T Consensus 152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~ 230 (296)
T PRK05951 152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL 230 (296)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence 998665554 5678899999999999999999999999999999999999999999999999999 77766676666654
Q ss_pred h
Q 021301 312 A 312 (314)
Q Consensus 312 ~ 312 (314)
+
T Consensus 231 ~ 231 (296)
T PRK05951 231 Q 231 (296)
T ss_pred H
Confidence 3
No 10
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=266.22 Aligned_cols=223 Identities=20% Similarity=0.203 Sum_probs=189.8
Q ss_pred cccchhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccc
Q 021301 78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDA 151 (314)
Q Consensus 78 ~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~ 151 (314)
++...+++.|++.+||+++..++.|+++|.+.+ +.++|.. .++ .+++..++|+++|.+|||+|++ .|+
T Consensus 6 ~~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~-----~ll-~ll~~~l~q~~~N~~NDy~D~~~G~D~ 79 (304)
T PRK07419 6 SMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ-----FIT-FLLAAILILAWENLSNDVFDADTGIDK 79 (304)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 455678999999999999999999999997754 4566532 233 4457788999999999999987 787
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301 152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (314)
Q Consensus 152 ~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg 231 (314)
. +++ ...++..+++++...++.++.++++++.++.... ++..+.+++++.+.+++||.||+++||+++ ||+.++
T Consensus 80 ~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~ 153 (304)
T PRK07419 80 N-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCF 153 (304)
T ss_pred c-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHH
Confidence 4 222 2335555799999999999999999998887654 466788899999999999999999999998 999999
Q ss_pred HHHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 232 ASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 232 ~~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
+.+|.++..+ ++.++|.+++..++.+++.++.+.++.+.||++|+|+|+++|+||+|+++|+|++++++..++.++|++
T Consensus 154 l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~ 233 (304)
T PRK07419 154 LAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL 233 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence 9999887665 478889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 021301 311 VA 312 (314)
Q Consensus 311 v~ 312 (314)
++
T Consensus 234 ~i 235 (304)
T PRK07419 234 EL 235 (304)
T ss_pred HH
Confidence 64
No 11
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=8.8e-34 Score=264.51 Aligned_cols=209 Identities=30% Similarity=0.396 Sum_probs=172.9
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG 162 (314)
++|+|++++||+++...+.+.++|+..+.+..+.. .. ++..+++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~---~~-~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG 77 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDL---KG-IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG 77 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcch---HH-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence 47899999999999999999999988763322211 12 223345667889999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHH
Q 021301 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (314)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~ 242 (314)
++|+++++.++..+.++++.+++++ ++..+.+++++.++.++||. ++||++.++|+.+|..+|..++.++
T Consensus 78 ~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~ 147 (279)
T PRK09573 78 RISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG 147 (279)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888765 45567777888888899994 6999999999999999998887777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHH
Q 021301 243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (314)
Q Consensus 243 ~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~ 307 (314)
.+..+ ....+++++..++|+.++++.+|++|+|+|+++|+||+|+++|+|++.+++.....+.
T Consensus 148 ~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~ 210 (279)
T PRK09573 148 LAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210 (279)
T ss_pred HHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHH
Confidence 66554 3445566677789999999999999999999999999999999999988776554443
No 12
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=2.7e-33 Score=261.54 Aligned_cols=214 Identities=18% Similarity=0.209 Sum_probs=181.2
Q ss_pred CcchhHHHHHHHHHHHHHh---CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccccC--CCCCCcccccc
Q 021301 92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI 164 (314)
Q Consensus 92 RP~~~~~~i~~~l~G~~~a---g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~n--~~~Rpl~sG~i 164 (314)
||+++..++.|+++|.+.+ +.++|. ..+++ +++..++|+++|.+|||+|++ .|+.+ +|+|++++|.+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~~ll~-~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i 74 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----VALLA-LATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI 74 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCccHH-----HHHHH-HHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence 8999999999999998764 445553 23333 456778999999999999985 46533 47899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCc---hHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (314)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~~~~---~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~ 241 (314)
++++++..++.+++++++++.++....+.. ....+.+++++.+.+++||.||+++||+++ ||+.+++.+|.++..+
T Consensus 75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence 999999999999999999998876654310 013567888899999999999999999998 8999999999876665
Q ss_pred -HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 242 -GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 242 -~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
++.++|.+++..++.+++.++++.++++.||++|+|+|+++|+||+++++|+|++++++..++..+|+.++
T Consensus 154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 46889999999999899999999999999999999999999999999999999999999999999887554
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.7e-33 Score=260.93 Aligned_cols=211 Identities=30% Similarity=0.427 Sum_probs=174.6
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcc
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~ 160 (314)
+++++|++++||+.+....++.++|+..+. .+++ .. ++..+++..+.++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~-----~~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL-----DE-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCch-----HH-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 578999999999999999999999988763 3322 11 2234456778899999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (314)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l 240 (314)
+|++|+++++.++.++.++++.++..+ ++..+.+++++.+.++.||. ++|++++++++.+|..++..+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~ 145 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIF 145 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHH
Confidence 999999999999998888888888766 35566677778888999994 79999988999998887765555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (314)
Q Consensus 241 ~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l 309 (314)
++.+. +......++++...++|++++++.+|++|+|+|+++|+||+|+++|+|++.+++..++.+.++
T Consensus 146 g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~ 213 (279)
T PRK12884 146 GGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL 213 (279)
T ss_pred HHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHH
Confidence 65544 333446677778889999999999999999999999999999999999999888766665554
No 14
>PLN02922 prenyltransferase
Probab=100.00 E-value=6.5e-33 Score=262.30 Aligned_cols=223 Identities=22% Similarity=0.264 Sum_probs=179.9
Q ss_pred ccchhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--cccc
Q 021301 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (314)
Q Consensus 79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~ 152 (314)
.+.+++|.|+++.||+++..++.|+++|.+.+ +.++|.. .++ .+++..++|.++|.+|||+|++ .|+.
T Consensus 10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~-----~ll-~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 83 (315)
T PLN02922 10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR-----YGT-LLLSSVLVITWLNLSNDAYDADTGVDKN 83 (315)
T ss_pred CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH-----HHH-HHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence 35678999999999999999999999997654 4566642 333 3457788999999999999986 6875
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (314)
Q Consensus 153 n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~ 232 (314)
++..+.-..| ++++++..++.+++++++ +.++..+.. .++..+.+++++++.+++||.||+++||+|+ ||+.+++
T Consensus 84 ~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~~-~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i 158 (315)
T PLN02922 84 KKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLVA-GNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFA 158 (315)
T ss_pred cCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHHc-cChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHH
Confidence 4322122233 999999988888888874 443332210 1355788899999999999999999999998 8999999
Q ss_pred HHHHHHHHHH-HHhhC----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301 233 SYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 233 ~~~~lp~l~~-~a~~g----------~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
.+|.++..+. +.++| .++++.++.+++.++++.++++.||+||+|+|+++|+||+|+++|+|++++++.
T Consensus 159 ~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~ 238 (315)
T PLN02922 159 AFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVR 238 (315)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHH
Confidence 9988776654 56666 357778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 021301 302 GAIDITQISVA 312 (314)
Q Consensus 302 ~li~l~~l~v~ 312 (314)
.++.++|+.++
T Consensus 239 ~l~~~~y~~~i 249 (315)
T PLN02922 239 WAVLLLYSLLA 249 (315)
T ss_pred HHHHHHHHHHH
Confidence 99999987665
No 15
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.6e-33 Score=260.93 Aligned_cols=211 Identities=31% Similarity=0.378 Sum_probs=171.6
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG 162 (314)
++|+|++++||+++..++.+.++|+..+...... ... .+..+++..+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~~~-~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G 78 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---PSL-TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---HHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence 4799999999999999999999999876432111 111 233445677889999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHH
Q 021301 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (314)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~ 242 (314)
++|+++++.++.++.++++++++.+ ++..+.+++++.++.+.||. ++|+++++||+.+|...|..+.+++
T Consensus 79 ~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~ 148 (276)
T PRK12882 79 AVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG 148 (276)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887765 45567777777778899985 8999998899999887777666665
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHH
Q 021301 243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (314)
Q Consensus 243 ~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~ 307 (314)
.+.........+++++..++|++++++.||++|+|+|+++|+||+|+++|+|++.+++.....+.
T Consensus 149 ~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~ 213 (276)
T PRK12882 149 AAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVA 213 (276)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHH
Confidence 44322234445667778888999999999999999999999999999999999998876655443
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.5e-33 Score=260.85 Aligned_cols=211 Identities=27% Similarity=0.249 Sum_probs=174.1
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCCCC
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRP 158 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~Rp 158 (314)
++|+|++++||+.........+.|+..+ +.+++. . ++..+++..+.++++|++|||+|+|+|++| +|+||
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP 74 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK-----T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP 74 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence 4789999999999999888888888765 334432 1 223445677889999999999999999999 48999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp 238 (314)
+++|++|+++++.++.++.++++.++..+ ++....++.++.++.+.|+ .+||++.++++..|+.++..+
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~ 143 (282)
T TIGR01475 75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP 143 (282)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence 99999999999998887776666666655 3445666666777788998 489999999999999888777
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 239 ~l~~~a~~g~~~--~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
+.+|.++.|+++ ...++++++.++|+.++++++|++|+|+|+++|+||+|+++|+|++++++..+..+++++
T Consensus 144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~ 217 (282)
T TIGR01475 144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFIL 217 (282)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHH
Confidence 778888888888 778888889999999999999999999999999999999999999988877766555543
No 17
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=6.9e-33 Score=257.71 Aligned_cols=223 Identities=18% Similarity=0.205 Sum_probs=173.6
Q ss_pred ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCC
Q 021301 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR 157 (314)
Q Consensus 79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~R 157 (314)
+....++.+++++||.+|+...+++++|+..+|. ++|.+. ...++++++. ..+.+.|.+|||+|+|+|++|+|+|
T Consensus 7 ~~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~~~-p~n~~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 7 GILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYLTL-PFNLLIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred hhhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHHHH-HHHHHHHHHHhhhhhhhhccCCCCC
Confidence 3346678899999999999999999999988764 565211 1233333333 3567899999999999999999999
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHH
Q 021301 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (314)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l 237 (314)
++++|++++++++.+...+.+.++.++.++.... +|..+.+.+.+.+++++||.||+|+|++++++++.. ..++ +
T Consensus 83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~ 157 (292)
T PRK13595 83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-L 157 (292)
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-H
Confidence 9999999999999877666666554444443332 466777777888999999999999999999988876 3333 4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 238 p~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
|+..+.+..|+......+ +..++|.++++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.....
T Consensus 158 p~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~ 230 (292)
T PRK13595 158 PLALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW 230 (292)
T ss_pred HHHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 776666667755433322 3456788999999999999999999999999999999999999888877766543
No 18
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=258.52 Aligned_cols=209 Identities=22% Similarity=0.194 Sum_probs=172.4
Q ss_pred chhHHHHHhhhCcchhHHHHHHHHHHHHHhC-------CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC
Q 021301 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-------~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n 153 (314)
++++|+|++++||+..+......+.|++.+. .+++ .. ++..++++.+..+++|++|||+|+|+|++|
T Consensus 5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~-----~~-~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF-----KL-LILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 4579999999999999998888888876542 2333 12 233345666778899999999999999999
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (314)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg 231 (314)
+ ++||+++|++|+++++.++.++.++++.+++.+ ++....+++..++....|+ .+||++.++++..|
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g 147 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLG 147 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHH
Confidence 8 799999999999999998888887776666554 4555666666667788999 49999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l 306 (314)
+.++..|+.||.+..|++++..+++++..++|+.+++..++++|+|+|+++|+||+|+++|++++.++......+
T Consensus 148 ~~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~ 222 (291)
T PRK12874 148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLL 222 (291)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHH
Confidence 988877888888888999988888888999999999999999999999999999999999999988765544433
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=256.46 Aligned_cols=215 Identities=21% Similarity=0.256 Sum_probs=177.0
Q ss_pred chhHHHHHhhhCcch---hHHHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301 81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~---~~~~i~~~l~G~~~ag~~~-~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-- 154 (314)
..++|+|++++||+. ...+++++++|+..+.... .. +.. ++..+++..++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~~~-~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---ISL-LVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---HHH-HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 357999999888875 4467789999987652211 11 122 2334456678899999999999999999876
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHH
Q 021301 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (314)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~ 234 (314)
++||+++|++|+++++.++.++.++++.+++.+ ++..+.+++++.+..+.|| ..||+..++++..|+.+
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~ 148 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTF 148 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHH
Confidence 689999999999999999988888888777655 4567788888888889998 38888888999988888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 235 ~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
+..++.+|.++.|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|++++.+++...+...++.
T Consensus 149 ~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~ 224 (285)
T PRK12847 149 NMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILW 224 (285)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHH
Confidence 8767777778889999999999999999999999999999999999999999999999999988887766665554
No 20
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=2.1e-32 Score=254.99 Aligned_cols=204 Identities=26% Similarity=0.402 Sum_probs=166.3
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccc
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~s 161 (314)
++|+|++++||+++..++++.++|+..+ +.++. . . ..+..+++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-~---~-~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP-I---K-TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-H---H-HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 5789999999999999999999998765 33321 1 1 122333455667789999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (314)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~ 241 (314)
|++++++++.++.++.++++.+++.+ ++..+.+++.+.+++++|+. ++|+++++||+.+|..+|..|+.+
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g 146 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG 146 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999888888888777665 34566677777788999994 789988889999999999888776
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHH
Q 021301 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA 303 (314)
Q Consensus 242 ~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~l 303 (314)
+.+. +++++..++. ...+++.+++++.||++|+|+|+++|+||+|+++|+|++++++..+
T Consensus 147 ~~a~-~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 147 AIAV-GRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred HHHh-ccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 6544 7777765543 3467788889999999999999999999999999999998876654
No 21
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.9e-32 Score=254.78 Aligned_cols=210 Identities=25% Similarity=0.205 Sum_probs=171.0
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCC
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR 157 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~R 157 (314)
+++|+|++++||+.......+.+.|+..+. .+++. .++..+++..+.++++|++|||+|+|+|++|+ ++|
T Consensus 6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 578999999999999999998999988762 23321 12334456678889999999999999999998 689
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHH
Q 021301 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (314)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l 237 (314)
|+++|++|+++++.+...+.++++.+...+ ++....+++++.+..+.|+ .+||++.++++..|+.++..
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~~ 148 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLALA 148 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHHH
Confidence 999999999999887655554444443333 5666677777777788999 38999999999988887777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 238 p~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
|+.+|.++.|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|+++++++......+.+
T Consensus 149 ~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~ 219 (291)
T PRK12886 149 PLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMI 219 (291)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999999999999999999999999887755444433
No 22
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=4.4e-32 Score=253.55 Aligned_cols=214 Identities=23% Similarity=0.235 Sum_probs=180.2
Q ss_pred HHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--ccccCCCCCCcc
Q 021301 87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINEPYRPIP 160 (314)
Q Consensus 87 ~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~n~~~Rpl~ 160 (314)
|++.+||+++..++.|+++|.+.+ +.+++.. .+++ +++..++|+++|.+|||+|++ .|+.+.. ...
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~-----~ll~-li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~ 73 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR-----FALF-LIAAILILAWINLTNDVFDSDTGIDRFKLH--SIV 73 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH-----HHHH-HHHHHHHHHHHHHHHhHHHHhcCCCccccC--Ccc
Confidence 788999999999999999997754 4566532 2333 357778999999999999986 5874321 122
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (314)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l 240 (314)
++..+++++...+.+++.++++++.++.... ++..+.+++++++.+++||.||+++||+++ ||+.+++.+|.++..
T Consensus 74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~ 149 (285)
T TIGR02235 74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA 149 (285)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence 3334678888888888889998888876654 456788888999999999999999999998 999999999987665
Q ss_pred H-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 241 ~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
+ ++.++|++++..++.+++.++.+.++.+.||+||+|+|+++|+||+++++|+|++++++..++.++|++++
T Consensus 150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i 222 (285)
T TIGR02235 150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLL 222 (285)
T ss_pred HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHH
Confidence 5 57889999999999999999999999999999999999999999999999999999999999999998754
No 23
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=254.86 Aligned_cols=210 Identities=26% Similarity=0.231 Sum_probs=170.0
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHH----h-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--C
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAA----S-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~----a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~ 155 (314)
++|.|+++.||++.+......+.|+.. + +.+++. . ++..+++..+.++++|++|||+|+|+|++|+ +
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~ 74 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA-----D-LLLVTVAMVGARTFAMAANRIIDREIDARNPRTA 74 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence 478999999999988765554444432 2 444432 1 2233456677899999999999999999998 7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (314)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~ 235 (314)
+||+++|++|+++++.+...++.+++.++..+ ++.++.++.++++..+.|+ ..||+++++++..|+.++
T Consensus 75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~ 143 (284)
T PRK12888 75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA 143 (284)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence 99999999999999998877776666666554 4556667767777778897 489999999999999888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (314)
Q Consensus 236 ~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l 309 (314)
..|+.+|.++.|++++..++++++.++|+.+++++++++|+|+|+++|+||+|+++|+|++.+++..+..+..+
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ 217 (284)
T PRK12888 144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFA 217 (284)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHH
Confidence 77888888888999999999999999999999999999999999999999999999999998766655544443
No 24
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-32 Score=250.61 Aligned_cols=224 Identities=20% Similarity=0.262 Sum_probs=188.1
Q ss_pred cchhHHHHHhhhCcchhHHHHHHHHHHHHHh---C-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccc--cccc-
Q 021301 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI- 152 (314)
Q Consensus 80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a---g-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~--~D~~- 152 (314)
.+++.+.|++++||++++.++.|+++|.+.+ + .++| +..++++ ++..+++.++|..|||+|++ .|.+
T Consensus 4 ~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~~ll~L-i~~~~iq~~vN~~NdY~D~~KG~D~~g 77 (303)
T COG1575 4 KTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLAL-IAAILLQILVNLANDYFDYKKGTDTHG 77 (303)
T ss_pred ccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HHHHHHH-HHHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence 3456789999999999999999999997654 2 3444 3344444 56778899999999999986 6753
Q ss_pred ---CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHH
Q 021301 153 ---NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA 229 (314)
Q Consensus 153 ---n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~ 229 (314)
.+.++.+...+++++..+...+.++..+.+++..+.... ++.++.++++|.+.++.||.+|++++|.|+ ||+.
T Consensus 78 ~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~ 153 (303)
T COG1575 78 PDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIF 153 (303)
T ss_pred CccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHH
Confidence 224566667778888888888877777777776655443 466788999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 230 LGASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 230 vg~~~~~lp~l~-~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
+++++|.+.+.+ +|.+++++++..++.+++.++.+.++...||+||+|+|+++|++|+|+++|+++++.++..++..+|
T Consensus 154 ~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~ 233 (303)
T COG1575 154 VGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAY 233 (303)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHH
Confidence 999999876554 5788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 021301 309 ISVAG 313 (314)
Q Consensus 309 l~v~~ 313 (314)
+.++.
T Consensus 234 l~~~~ 238 (303)
T COG1575 234 LAIVI 238 (303)
T ss_pred HHHHH
Confidence 88763
No 25
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.4e-31 Score=249.74 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=167.7
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCC
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rp 158 (314)
++|+|++++||++.....++.+.|+..+++ +++. .++..++++.+.++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 74 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP 74 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence 478999999999999999999999987632 3331 12334557778899999999999999999987 7999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhCCchHHHH-HHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~~~~~p~~~-~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~ 236 (314)
+++|++|+++++.++.++.++++.++++ + ++... .+.+...+..+.||. ++||++++ |..++...+.
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~ 143 (279)
T PRK12869 75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN 143 (279)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence 9999999999999999998888888876 4 34332 334444567789993 79999995 6566666666
Q ss_pred HHHH-HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301 237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (314)
Q Consensus 237 lp~l-~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l 306 (314)
+|.+ +|.++.|++++..++++++.++|+.++.+.++++|+|+|+++|+||+|+++|+|++++++..+..+
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~ 214 (279)
T PRK12869 144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL 214 (279)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence 6555 456778999999999999999999999998999999999999999999999999998766544433
No 26
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.3e-32 Score=253.30 Aligned_cols=211 Identities=17% Similarity=0.048 Sum_probs=171.2
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCcc
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP 160 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~ 160 (314)
++|+|++++||+..+..+..++.|+..+.+...+.. . ++..+++..+..+++|++||++|+|+|++|+ ++||+|
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~---~-l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp 77 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI---K-ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV 77 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH---H-HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence 578999999999999999999999987632212111 1 2223445667889999999999999999995 799999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHH
Q 021301 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (314)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l 240 (314)
+|++|++||+.+..++.++++.+.+.+ ++.++.++.....+...|+ .+||+++++|+.+|+.++..|+.
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~l~ 146 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGVLA 146 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHHHH
Confidence 999999999999998888887777665 5666667766665656665 59999999999999999977777
Q ss_pred HHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 241 AGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 241 ~~~a~~g~~~~--~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
+|.+..|++++ ..+++.+..++|+.+++++++++|+|+|++.|+||+|+++|++++.++...+..++.
T Consensus 147 g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~ 216 (286)
T PRK12895 147 GYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSL 216 (286)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHH
Confidence 88888888764 345677888999999999999999999999999999999999999877654444443
No 27
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.2e-31 Score=252.22 Aligned_cols=210 Identities=23% Similarity=0.262 Sum_probs=169.1
Q ss_pred ccchhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (314)
Q Consensus 79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-- 154 (314)
..+.++|+|++++||++++...+++++|+..+. .+++. . ++..+++..++++++|++|||+|+|+|++|+
T Consensus 5 ~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~-----~-~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt 78 (296)
T PRK04375 5 SSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL-----L-LLLTLLGIALVAGAAGALNNYIDRDIDAKMERT 78 (296)
T ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCcc
Confidence 445789999999999999999999999998763 23331 1 2334456778899999999999999999987
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHH
Q 021301 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS 233 (314)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~ 233 (314)
|+||+++|++|+++++.++.++.++++++++++. ++....+++++.+ ..+.||. ++||+++ +|..++..
T Consensus 79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~ 148 (296)
T PRK04375 79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGA 148 (296)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHH
Confidence 7999999999999999999988888888775542 3334455555543 4678983 7999997 67777766
Q ss_pred HHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHH
Q 021301 234 YISLP-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI 304 (314)
Q Consensus 234 ~~~lp-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li 304 (314)
.+.+| +.+|+++.|++++..+++++..++|+.++...++++|+|||+++|+||+|+++|+++++++.....
T Consensus 149 ~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~ 220 (296)
T PRK04375 149 AGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYT 220 (296)
T ss_pred HHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHH
Confidence 66555 456667789999988989999999999999999999999999999999999999998876554433
No 28
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7.2e-32 Score=255.38 Aligned_cols=214 Identities=22% Similarity=0.277 Sum_probs=178.4
Q ss_pred chhHHHHHhhh---CcchhHHHHHHHHHHHHHhCCC-----CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccccccc
Q 021301 81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI 152 (314)
Q Consensus 81 ~~~~~~~l~l~---RP~~~~~~i~~~l~G~~~ag~~-----~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~ 152 (314)
+.++++|++++ ||++....++++++|++++... .. ++...++ .+++++++++++|++|||+|+|+|++
T Consensus 27 ~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~~~l-~~l~~~l~~~a~~~~Nd~~Dr~iD~~ 102 (314)
T PRK12878 27 PPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWHLFL-FFVGAIAMRGAGCTYNDIVDRDIDAK 102 (314)
T ss_pred chhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999 9999999999999999876321 22 1222233 34577788999999999999999998
Q ss_pred CC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHH
Q 021301 153 NE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL 230 (314)
Q Consensus 153 n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~v 230 (314)
|+ ++||+++|++|+++++.++.++.++++.+.+.+ ++..+.+++++++..+.|+ .+||+..++++..
T Consensus 103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~ 171 (314)
T PRK12878 103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFFL 171 (314)
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHH
Confidence 76 689999999999999988888888887776654 4567788888888899997 3999888888888
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301 231 GASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (314)
Q Consensus 231 g~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l 309 (314)
|+.++..|+.+|++++|++++..+++++..++|+.+++.+++++|+|+|+++|+||+|+++|++++++++.....+..+
T Consensus 172 Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~ 250 (314)
T PRK12878 172 GLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL 250 (314)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence 8887777777888889999998888888899999999999999999999999999999999999998877655544433
No 29
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=249.22 Aligned_cols=205 Identities=22% Similarity=0.273 Sum_probs=169.1
Q ss_pred chhHHHHHhhhC---cchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301 81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (314)
Q Consensus 81 ~~~~~~~l~l~R---P~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~- 154 (314)
++++|+|++++| |+......++.++|+..+. .+++. .++..+++.++.++++|++|||+|+|+|++|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 75 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKR 75 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCC
Confidence 357999999997 5566777788888987653 23321 12233345567889999999999999999876
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (314)
Q Consensus 155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~ 233 (314)
++||+++|++|+++++.++.++..+++++++.+ ++....+++++.+..++|+ ..||++.++++..|+.
T Consensus 76 t~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~ 144 (282)
T PRK12848 76 TKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAA 144 (282)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHH
Confidence 589999999999999999999998888877655 4556777777788888995 3788888899988888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
++..+..+|.++.|++++..+++++..++|+.++.+.++++|+|+|+++|+||+|+++|+|++.++...
T Consensus 145 ~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~ 213 (282)
T PRK12848 145 FGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL 213 (282)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH
Confidence 887667777888899999999999999999999999999999999999999999999999998776543
No 30
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-31 Score=250.99 Aligned_cols=211 Identities=20% Similarity=0.124 Sum_probs=167.3
Q ss_pred chhHHHHHhhhCcchhHHHHHHHHHHHHHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CC
Q 021301 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY 156 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag--~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~ 156 (314)
+.++|+|++++||+..+....+.+.|+..+. .+++. .++..+++..++++++|++|||+|+|+|++|+ ++
T Consensus 12 ~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 12 RSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 4689999999999999999888999988763 33331 12233456677899999999999999999995 79
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (314)
Q Consensus 157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~ 236 (314)
||+++|++|++|++.+..++.+.++.+++.+ ++....++.++.++.+.|+ .+||+++++|+.+|+.++.
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~ 154 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGL 154 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHH
Confidence 9999999999999988766665555555544 4556666666666777898 4899999999999999988
Q ss_pred HHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 237 LPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 237 lp~l~~~a~~g~~--------~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
.++.++.+..|.. +..++++.+..++|+.+++++++++|+|+|++.|+||+|+++| +++++++..+..++.
T Consensus 155 ~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v 233 (300)
T PRK13106 155 AVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSV 233 (300)
T ss_pred HHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHH
Confidence 8888887777743 2344555667789999999999999999999999999999999 888877765555544
Q ss_pred H
Q 021301 309 I 309 (314)
Q Consensus 309 l 309 (314)
+
T Consensus 234 ~ 234 (300)
T PRK13106 234 V 234 (300)
T ss_pred H
Confidence 3
No 31
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-31 Score=250.95 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=170.3
Q ss_pred chhHHHHHhhhCcch---hHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301 81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~---~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~- 154 (314)
+.++++|++++||+. .....+++++|+..+ +.+++. . ++..+++.+++++++|++|||+|+|+|++|+
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~-----~-~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP-----L-VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 468999999987666 455668999998765 333331 1 2233456677889999999999999998766
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (314)
Q Consensus 155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~ 233 (314)
++||+++|++|++|++.++.++.++++.+++.+ ++..+.+++.+.++.++|+ ..||+..++++..|+.
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~ 148 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIA 148 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHH
Confidence 489999999999999999999998888887766 4566777777888888998 3888888899998988
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
++..+..+|.++.|++++..+++++..++|+.+++++++++|+|+|+++|+||+|+++|++++.++..
T Consensus 149 ~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~ 216 (290)
T PRK12870 149 WGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL 216 (290)
T ss_pred HHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH
Confidence 88767777778899999988888999999999999999999999999999999999999999887665
No 32
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.98 E-value=3e-31 Score=247.78 Aligned_cols=203 Identities=24% Similarity=0.306 Sum_probs=165.2
Q ss_pred HHhhhCcchhHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccccc
Q 021301 87 RLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGA 163 (314)
Q Consensus 87 ~l~l~RP~~~~~~i~~~l~G~~~ag~~-~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~sG~ 163 (314)
..++.||+.+....++.+.|+..+... ... ++. .++.++++..+.++++|++|||+|+|+|++|+ |+||+++|+
T Consensus 7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~~-~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 83 (281)
T TIGR01474 7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PLY-LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA 83 (281)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHhcccCCC--cHH-HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence 344557888889999999998876321 111 111 12333445567889999999999999999776 589999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 021301 164 ISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ 243 (314)
Q Consensus 164 is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~ 243 (314)
+|+++++.++.++.++++.+++.+ ++....++++++++.+.|| .+||++.++++..|+.++..|+.+++
T Consensus 84 is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~~ 152 (281)
T TIGR01474 84 VSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGWA 152 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999988888888877654 4667788888888899998 39999999999999888877778888
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHH
Q 021301 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA 303 (314)
Q Consensus 244 a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~l 303 (314)
++.|++++..+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++++.....
T Consensus 153 a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~ 212 (281)
T TIGR01474 153 AVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLY 212 (281)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHH
Confidence 888999988887888889999999999999999999999999999999999876654433
No 33
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=6.3e-31 Score=244.90 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=166.2
Q ss_pred HHHHHhhhCcchhHHHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301 84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (314)
Q Consensus 84 ~~~~l~l~RP~~~~~~i~~~l~G~~~ag~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG 162 (314)
+|.+++++||++|+...+|+.+|+..++. ++| . .+++.+......+.++|.+|||+|+|.|..|++++.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~-~-----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDW-L-----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCCCCCh-H-----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 37899999999999999999999988754 333 1 1222221122344555777999999999999865443 58
Q ss_pred ccCHHHHHHHHHHHHHHHHH-HHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHH
Q 021301 163 AISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (314)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~-l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~ 241 (314)
.++++++....+.+..++.. +++.+... .++.++.++.++++.++.||.||+|+||+++.+++..++.+......+
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHH
Confidence 89999986665555554444 34333221 146677888889999999999999999999988865555543333334
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 242 ~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
.+...+.+++..++.+..+++|..+++++||++|+|+||+.|+||+|+++|+|++.+++..++.+++++.+
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 151 LVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 44446667777888888899999999999999999999999999999999999999999999999887654
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.98 E-value=7.8e-31 Score=247.40 Aligned_cols=208 Identities=24% Similarity=0.218 Sum_probs=167.4
Q ss_pred ccchhHHHHHhhhCcchhHHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--
Q 021301 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (314)
Q Consensus 79 ~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-- 154 (314)
..+.++|+|++++||+++...++++++|++.+ +.+++. . ++..+++.++.++++|++|||+|+|+|++|+
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~-----~-~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt 81 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV-----L-MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT 81 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence 34567899999999999999999999999876 333331 1 2233456677889999999999999999876
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHH
Q 021301 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS 233 (314)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~ 233 (314)
++||+++|++|+++++.++.++..+++.++.++. ++....++.++.+ ..++|| .++||+++++++..|+.
T Consensus 82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~ 152 (306)
T PRK13362 82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLS 152 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHH
Confidence 5899999999999999999988888887665432 3444444444443 467998 36999999988876665
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHH
Q 021301 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 234 ~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
.+..|+.||.++.|++++..++++...++|+.++.+..+++|+|||+++|+||+|+++|+|++++...
T Consensus 153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence 55555667778889999999999999999999999999999999999999999999999998876433
No 35
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.98 E-value=8.5e-31 Score=244.53 Aligned_cols=204 Identities=21% Similarity=0.194 Sum_probs=162.5
Q ss_pred HHHHhhhCcchhHHHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccc
Q 021301 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPS 161 (314)
Q Consensus 85 ~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~-~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~s 161 (314)
|+|++++||+++....+++++|+..++... .+ +.. ++.++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~---~~~-~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVN---PPL-LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCC---HHH-HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 479999999999999999999998764321 11 112 2334457778899999999999999999976 7999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHHHH-
Q 021301 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPW- 239 (314)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~- 239 (314)
|++|+++++.++.++.++++.+..+.. ++....+++++.++ .++||. .+||++++++ .++...+.+|.
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~~~-~v~~~~g~~~~l 146 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQNT-VIGGFAGAVPPL 146 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCchhH-HHHHHHHHHHHH
Confidence 999999999999988888877544321 45566677777654 789994 5999998644 55556666654
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 240 l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
.+|++++|++++..+++++..++|+..+.....++|+|+|+++|+||+|+++|+|++.++...
T Consensus 147 ~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~ 209 (280)
T TIGR01473 147 IGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIAL 209 (280)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHH
Confidence 455677899999988888899999998888888999999999999999999999988765443
No 36
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.97 E-value=1.8e-30 Score=243.42 Aligned_cols=208 Identities=30% Similarity=0.375 Sum_probs=178.7
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCC--CCC
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRP 158 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~--~Rp 158 (314)
..++.++++.||.++.+..++.++|...++ ++.. ....+..++++++..+++|++||++|+|+|++|+| +||
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence 456777788889999999999999988764 2221 12234455567778899999999999999999997 999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp 238 (314)
+++|++|+++++.+..+++++++.+++.+ ++..+.+++.+.++.++| | ++||.++++++.+|..++..+
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~ 154 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGA 154 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999998877 455677888888899999 3 699999999999999998888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHH
Q 021301 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID 305 (314)
Q Consensus 239 ~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~ 305 (314)
..++.+..|+.....+++.+..++|+++++..++++|+|+|++.|++|+|+.+|++++.+++.....
T Consensus 155 ~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~ 221 (289)
T COG0382 155 LAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLL 221 (289)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHH
Confidence 8888888887888888888899999999999999999999999999999999999999988877773
No 37
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.97 E-value=3.8e-30 Score=240.97 Aligned_cols=209 Identities=24% Similarity=0.271 Sum_probs=168.8
Q ss_pred hhHHHHHhhhC---cchhHHHHHHHHHHHHHh---CC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC
Q 021301 82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (314)
Q Consensus 82 ~~~~~~l~l~R---P~~~~~~i~~~l~G~~~a---g~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~ 154 (314)
++++.|+|++| |..+....+|.+.|...+ +. +++. .++.++++..++.+++|++||++|+|+|++|+
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 57889998875 667778888888887654 22 2321 12334456677889999999999999999986
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (314)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~ 232 (314)
|+||+++|++|+++++.+..++.++++.+.+.+ ++..+.++++++++.++|| .+||+++++++..|+
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~ 146 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGL 146 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHH
Confidence 699999999999999998888888888877765 3556777778888888998 399999999999998
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 233 SYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 233 ~~~~lp~l~~~a~~g~~~~~~ll-l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
.++..|+.+|.++.|++++..++ +....++|+.++++++.++|+|+|+++|+||+|+++|++...+++. +..+++
T Consensus 147 ~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~ 222 (289)
T PLN02809 147 TFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASI 222 (289)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHH
Confidence 88877888888888988876654 6677788999999999999999999999999999999997766664 444333
No 38
>PLN02878 homogentisate phytyltransferase
Probab=99.97 E-value=7.7e-30 Score=234.88 Aligned_cols=181 Identities=24% Similarity=0.488 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH
Q 021301 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV 203 (314)
Q Consensus 124 ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l 203 (314)
++..+++..+.+.+...+|||+|+|+|++|||+||+|||++|+++++.+...+.++++.+++.++. .+ .+...+
T Consensus 25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~-----~~-l~~al~ 98 (280)
T PLN02878 25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGS-----WP-LFWALF 98 (280)
T ss_pred HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCh-----HH-HHHHHH
Confidence 444556777889999999999999999999999999999999999999999999999998887642 12 222234
Q ss_pred HHHHhhheecC--CCcccccccchhhHHHHHHHHHH---HHHHH--HHhhC---CCCHHHHHHHHHHHHHHHHHHHHhhc
Q 021301 204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAIVNDF 273 (314)
Q Consensus 204 ~~~~l~~~Ys~--pPl~lK~~~~~g~l~vg~~~~~l---p~l~~--~a~~g---~~~~~~lll~l~~~l~~~~~~~~~d~ 273 (314)
.++++++.||. ||+|+|+++++..+.....-+.. +++.+ ....| .++...++..+.+++...++++.||+
T Consensus 99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi 178 (280)
T PLN02878 99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI 178 (280)
T ss_pred HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45578899996 99999999998765442222222 22222 12234 23334455554666777889999999
Q ss_pred cChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 274 ~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
+|+|||++.|++|+|+++|+|++.+++..++.++|+.
T Consensus 179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~ 215 (280)
T PLN02878 179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA 215 (280)
T ss_pred cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984
No 39
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4.3e-29 Score=234.70 Aligned_cols=215 Identities=20% Similarity=0.293 Sum_probs=159.4
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHh----CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC----
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN---- 153 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a----g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n---- 153 (314)
+++|+|++++||+++.....++..|.+.+ |.+++. ..++. ++.+.+...++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~~~l~-~l~~~l~~~ag~~iND~~D~~~D~~~v~rt 76 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----LTIKA-ALIGLFGFEAGFVLNDYVDRKRDRLDVENT 76 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----HHHHH-HHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence 46899999999998877777777786553 445542 12222 23444555667999999999999865
Q ss_pred -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccc----
Q 021301 154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQN---- 222 (314)
Q Consensus 154 -----~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~---- 222 (314)
+ ++||+++|++|+++++.++.++.+++++++..+.... ....+.+++.+.++++.|+. |++
T Consensus 77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~~-----~kr~~~~ 148 (297)
T PRK12871 77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQV-----KKRNQKY 148 (297)
T ss_pred hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc-----ccccccc
Confidence 2 5899999999999999999999999988887764322 22355666677777888983 333
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 223 GWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 223 ~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
+. +.+.-+..++..|+ .++++.|+++...+++++..++|+.++++++|++|+|+|+++|+||+|+++|+++++++...
T Consensus 149 p~-~~l~G~~~~~~~~~-~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~ 226 (297)
T PRK12871 149 PV-AQLLGRTDFTLFPA-AGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG 226 (297)
T ss_pred cH-HHHHHHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence 32 23222233444344 44567898998888888899999999999999999999999999999999999999876666
Q ss_pred HHHHHHHHhh
Q 021301 303 AIDITQISVA 312 (314)
Q Consensus 303 li~l~~l~v~ 312 (314)
+..+..+..+
T Consensus 227 ~~~l~~l~~~ 236 (297)
T PRK12871 227 FTALHFLAAI 236 (297)
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 40
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4.3e-29 Score=233.55 Aligned_cols=204 Identities=22% Similarity=0.162 Sum_probs=164.3
Q ss_pred chhHHHHHhhh---CcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-
Q 021301 81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (314)
Q Consensus 81 ~~~~~~~l~l~---RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~- 154 (314)
++++++|++++ ||.......++.+.|+..+.. +++ .. ++..++++.++.+++|++||+.|+|+|++|+
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~-----~~-~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 77 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSL-----LL-LLLIILGGLAVSGAGCIANDLWDRRIDRKVER 77 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 35799999995 566667888999999776532 222 12 3334456777889999999999999999987
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHH
Q 021301 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (314)
Q Consensus 155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~ 233 (314)
++||+++|++|+++++.+..++.++++.+.+.+.... ++..+.+++++++..+.|| .+||+..+.++..|+.
T Consensus 78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~---n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS---RNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHH
Confidence 6999999999999999999988888887776553111 4567777777777888999 3999999999999988
Q ss_pred HHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHH
Q 021301 234 YISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297 (314)
Q Consensus 234 ~~~lp~l~~~a~~g~~~~~--~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~ 297 (314)
.+.-|+.+|.+..|++++. .+++++..++|+.+++++++++|+|+|+++|++|+|+++|++..+
T Consensus 151 ~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~ 216 (294)
T PRK12873 151 WGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALK 216 (294)
T ss_pred HHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHH
Confidence 8777788888889988863 344457889999999999999999999999999999999975544
No 41
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=6.3e-29 Score=232.60 Aligned_cols=212 Identities=22% Similarity=0.156 Sum_probs=163.2
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHhC-------C-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag-------~-~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n 153 (314)
.+.|.|.++.|....+..+-=...|+..+. . ++++. +.. ++.+.++.++..+++|++|||+|+|+|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~--~~~-~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG--IKT-ISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC--HHH-HHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 468999999998877665544455554432 2 22221 111 233445666788999999999999999999
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHH
Q 021301 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (314)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg 231 (314)
+ ++||+|+|++|+++++.+...+.++++++...+ ||.++.++.+++++.++|| .+||+++++++..|
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG 147 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG 147 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence 8 699999999999999998876666666665555 5777888888888889998 49999999999999
Q ss_pred HHHHHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHH
Q 021301 232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~-~~~----~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l 306 (314)
+.++..|+.+|.+..++ .++ ..+++++..++|..+++++++++|+|+|++.|+||+|+++|++++.++...+..+
T Consensus 148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 99888788888777776 555 3345566677888899999999999999999999999999999986665544444
Q ss_pred H
Q 021301 307 T 307 (314)
Q Consensus 307 ~ 307 (314)
.
T Consensus 228 ~ 228 (300)
T PRK12876 228 S 228 (300)
T ss_pred H
Confidence 3
No 42
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=223.53 Aligned_cols=217 Identities=20% Similarity=0.251 Sum_probs=141.2
Q ss_pred cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCC---CCcchhHHHHHHHHHHHHHHH-HHHHHhhhcchhcccccccCCC
Q 021301 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINEP 155 (314)
Q Consensus 80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~---~~~~~~~~~~~ll~~~la~~l-~~~a~~~iND~~D~~~D~~n~~ 155 (314)
...++|.|+++.||++|+.++.++++|.+.+.. ..+.+ .+++++....+ .+...|.+|||+|+|+|+.|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr 78 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNPK 78 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence 346889999999999999999999999987632 11221 12222111111 2234566899999999999986
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHH
Q 021301 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (314)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~ 235 (314)
++. .+.+. ++.......+.+++..++..+.... ++....+.+..+++++.||.||+|+|++++.+.+..|. +
T Consensus 79 k~~--~r~~~-~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~- 150 (282)
T PRK12875 79 KDR--EREVR-YRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y- 150 (282)
T ss_pred ccC--CCCcc-HHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-
Confidence 553 11122 2221111111222222222221111 22223333446678899999999999999965444343 2
Q ss_pred HHHHH-HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301 236 SLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (314)
Q Consensus 236 ~lp~l-~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v 311 (314)
.+|.. +++++.|++++..++.+ .++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++....
T Consensus 151 ~~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~ 225 (282)
T PRK12875 151 ILPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAF 225 (282)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHH
Confidence 35554 44677888876554443 4789999999999999999999999999999999999988877766665543
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=9.4e-28 Score=224.17 Aligned_cols=218 Identities=21% Similarity=0.156 Sum_probs=168.1
Q ss_pred hHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCcccc
Q 021301 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (314)
Q Consensus 83 ~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG 162 (314)
-++.++++.|+.+......+..++.....-.++.+ . . ..+++..+.+.++|++|||+|+|+|+.|+|+||.+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~-- 74 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI-S----W-LLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF-- 74 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh-H----H-HHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH--
Confidence 46899999999999988888777654321223321 1 1 12234566788999999999999999999999987
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCc-ccccccchhhHHHHHHHHHHHHHH
Q 021301 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWA 241 (314)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl-~lK~~~~~g~l~vg~~~~~lp~l~ 241 (314)
+++++......+..+++.++.++.... .++..+.+++++.++++.||.||. ++|+.+..||+.+|..++..|.++
T Consensus 75 --s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~ 150 (285)
T PRK12872 75 --SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLIL 150 (285)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 455666655566666666665543221 146677777888888999999876 589999999999999998888776
Q ss_pred HH-HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 242 GQ-ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 242 ~~-a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
++ ...+.++...++.++..+++.+..+..+|++|+|+|+++|++|+|+++|+|++++++..+..+.++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~ 222 (285)
T PRK12872 151 GVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLI 222 (285)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHH
Confidence 54 444446777777788888889999999999999999999999999999999999999888888877553
No 44
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8e-28 Score=222.51 Aligned_cols=207 Identities=25% Similarity=0.235 Sum_probs=173.2
Q ss_pred cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCC
Q 021301 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR 157 (314)
Q Consensus 80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~R 157 (314)
.+.++|+|++++||+.....+++.+.|++++.....++ . .++...+++.+..++++++|+|+|+|+|++++ ++|
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~---~-l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP---L-LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH---H-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 45899999999999999999999999999875422222 1 23445556777888999999999999999998 699
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH-hhheecCCCcccccccchhhHHHHHHHHH
Q 021301 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (314)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~-l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~ 236 (314)
|+++|+++|++++.++.++.++|+.+..++. |+....+++++++ ..++||. .+||+..+ |.++|..-|.
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa 159 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA 159 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence 9999999999999999999999998875443 5666666766654 5789995 79999996 7777877777
Q ss_pred HH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHH
Q 021301 237 LP-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300 (314)
Q Consensus 237 lp-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~ 300 (314)
+| +.||.+++|++++..++++.++|+|+-.+...-.++-.||++++|++++|+.-|++.+++..
T Consensus 160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHH
Confidence 76 45667889999999999999999999888888888889999999999999999999886544
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=4.4e-27 Score=214.64 Aligned_cols=188 Identities=32% Similarity=0.538 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHh--CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhccccccc--CCCCCCccccccCHHHHHHH
Q 021301 97 PPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ 172 (314)
Q Consensus 97 ~~~i~~~l~G~~~a--g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~ 172 (314)
...+.+++.|+... +..++.. ... .+++.++.+.++|.+|||+|+|+|++ |+|+||+++|+++++++...
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~-----~~~-~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~ 75 (257)
T PF01040_consen 2 PLSFLPVLAGLALASGGPFNWPI-----FLL-GLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF 75 (257)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHH-----HHH-HHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence 34556666664443 2333321 122 22344567889999999999999999 78999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 021301 173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD 252 (314)
Q Consensus 173 ~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~ 252 (314)
+.++.++++++++.. ++..+.+.++..+.+++|| +|+++|++++++++.+++.++..+..++++..+..+..
T Consensus 76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T PF01040_consen 76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP 147 (257)
T ss_pred HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence 888888888877443 4556677777777789999 88899999999999999988877777777766666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHH
Q 021301 253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298 (314)
Q Consensus 253 ~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~ 298 (314)
.++.+...+++.......+|++|+|+|++.|++|+|+++|++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 7778878788888899999999999999999999999999999987
No 46
>PLN02776 prenyltransferase
Probab=99.94 E-value=1.9e-25 Score=212.19 Aligned_cols=195 Identities=21% Similarity=0.166 Sum_probs=157.1
Q ss_pred hhCcchhHHHHHHHHHHHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCCccccccC
Q 021301 90 LTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS 165 (314)
Q Consensus 90 l~RP~~~~~~i~~~l~G~~~ag~--~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rpl~sG~is 165 (314)
++||+.....+++.+.|+.++.. +++. .++..+++..+..+++|++||++|+|+|++|+ ++||+|+|++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 57999999999999999987632 3332 12334456677889999999999999999987 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHH-HHHHHH
Q 021301 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL-PWWAGQ 243 (314)
Q Consensus 166 ~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l-p~l~~~ 243 (314)
+++++.+++++.++++.+..+.. ++....++++++++ .+.|| .+||++++ |..+|...|.+ |+.||.
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~ 143 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence 99999999888887775543321 56667777766554 57899 49999986 67889998865 566777
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe--chhhHHHHHH
Q 021301 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICV 301 (314)
Q Consensus 244 a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~l--G~~~a~~l~~ 301 (314)
++.|++++..+++++..++|+..+.+.-.+.|.|||+++|++++|+.- |++.++.+..
T Consensus 144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~ 203 (341)
T PLN02776 144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALR 203 (341)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHH
Confidence 889999999999999999999998888899999999999999999976 4566654443
No 47
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=3.3e-24 Score=200.60 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=123.8
Q ss_pred HHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhhe
Q 021301 132 PCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYI 211 (314)
Q Consensus 132 ~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~ 211 (314)
.+...++|++|||+|+|+|++|+|+||.+ +++.++.++.+..++|+.+++..+ + ..+++++.+.++.
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g-------~--~ll~ll~~l~g~l 134 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDG-------M--LLLAFLPFITGYL 134 (307)
T ss_pred HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHh-------H--HHHHHHHHHHHHH
Confidence 35567899999999999999999999986 777787777777777777665543 2 2356778888999
Q ss_pred ecCC----Cc--ccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCc
Q 021301 212 YSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285 (314)
Q Consensus 212 Ys~p----Pl--~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~ 285 (314)
||.+ |+ ++|..+.+||+.+|..+|.....+.....+.. .......+..+...+..+.+||++|+|+|++.|++
T Consensus 135 YS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k 213 (307)
T PRK13591 135 YSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK 213 (307)
T ss_pred hcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence 9975 54 78888888999999999875443211111211 11111122222233566789999999999999999
Q ss_pred cccEEechhhHHHHHHHHHHHHHHHhh
Q 021301 286 SLPVAFGPETAKWICVGAIDITQISVA 312 (314)
Q Consensus 286 Tlpv~lG~~~a~~l~~~li~l~~l~v~ 312 (314)
|+|+++|++++++++..++.++++.++
T Consensus 214 TLPV~lG~~~A~~l~~~l~~~~~l~li 240 (307)
T PRK13591 214 TLPVSLGEQKTRNLLLGIHLFSHLVLG 240 (307)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.90 E-value=4.8e-23 Score=191.33 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH
Q 021301 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV 203 (314)
Q Consensus 124 ll~~~la~~l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l 203 (314)
+++++ ..++..+++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++... ...+
T Consensus 49 ~l~~~-~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i 115 (299)
T PRK13592 49 FVGVF-TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNV 115 (299)
T ss_pred HHHHH-HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 34443 3556678899999999999999999999999999999999998888766666555432 1122
Q ss_pred HHHHhhhee-----cCCCcccccccchhhHHHHHHHHHHHHHH--HH------HhhCCCCHH--HHHHHHHHHHHHHHHH
Q 021301 204 GGSLLSYIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--GQ------ALFGTLTPD--IIVLTLLYSIAGLGIA 268 (314)
Q Consensus 204 ~~~~l~~~Y-----s~pPl~lK~~~~~g~l~vg~~~~~lp~l~--~~------a~~g~~~~~--~lll~l~~~l~~~~~~ 268 (314)
...++.+.| +. ++|+.++.||+.++...+.....+ .+ ...|..... .+++++..++.+++++
T Consensus 116 ~~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rE 192 (299)
T PRK13592 116 GWFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWE 192 (299)
T ss_pred HHHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 233444556 74 899999999999988776433111 11 112322211 2455667788889999
Q ss_pred HHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 269 IVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 269 ~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
+.+|++| |||++ |.+|+|+.+|.|++.++..++..+..
T Consensus 193 I~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v 230 (299)
T PRK13592 193 VCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI 230 (299)
T ss_pred HHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence 9999999 88885 59999999999999888877665554
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.1e-21 Score=183.91 Aligned_cols=185 Identities=23% Similarity=0.244 Sum_probs=124.4
Q ss_pred chhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCCCC
Q 021301 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRP 158 (314)
Q Consensus 81 ~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~Rp 158 (314)
++++|+|++++||++|..+++...-+++..+..+.. .+.. .+..++++++..+++|++||++|+|+|++| +|+||
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP 84 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP 84 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence 468999999999999998887544333332222211 1222 233344556678899999999999999998 58999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp 238 (314)
+++|++++++++.++.++.++++.+++++ ++..+.+.+..+++.++|| +++|++++++++.++..++. +
T Consensus 85 lasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys---~~lK~~~~~d~l~va~~~~l-r 153 (295)
T PRK12324 85 IASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYS---FKLKHQPVLDVFCIASGFVL-R 153 (295)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh---HHhcCCchhhHHHHHHHHHH-H
Confidence 99999999999999988888888887765 3445555556667788999 48999999999998887764 5
Q ss_pred HHHHHHhhCCCCHHHHHHH--HHHHHHHHHHHHHhhccChHHhH
Q 021301 239 WWAGQALFGTLTPDIIVLT--LLYSIAGLGIAIVNDFKSVEGDR 280 (314)
Q Consensus 239 ~l~~~a~~g~~~~~~lll~--l~~~l~~~~~~~~~d~~Die~D~ 280 (314)
++++....+ .+...|++. +..+++-....-.+|..+.++|.
T Consensus 154 ~~~G~~a~~-~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~ 196 (295)
T PRK12324 154 AIAGGVAIG-VPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTG 196 (295)
T ss_pred HHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 554444444 233333322 22222222233445555555443
No 50
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.88 E-value=1.9e-22 Score=182.26 Aligned_cols=210 Identities=24% Similarity=0.298 Sum_probs=162.8
Q ss_pred ccchhHHHHHhhhC---cchhHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH-HHHHHHHhhhcchhcccccccCC
Q 021301 79 QETNKWKIRLQLTK---PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSG-PCLTGYTQTINDWYDREIDAINE 154 (314)
Q Consensus 79 ~~~~~~~~~l~l~R---P~~~~~~i~~~l~G~~~ag~~~~~~~~~~~~ll~~~la~-~l~~~a~~~iND~~D~~~D~~n~ 154 (314)
.++.+||.|.|++| |....+.-+|.....+.+......+. . -++++|-.| +++.+++|++||+.|+|+|++.+
T Consensus 59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~--~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVe 135 (353)
T KOG1381|consen 59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPS--I-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVE 135 (353)
T ss_pred cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccch--h-HHHHHhcccHHHhccCCceehhhhhhhhhhhHh
Confidence 34567999999986 66666666666665554322211110 1 234444333 45678999999999999999876
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHH
Q 021301 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (314)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~ 232 (314)
+.||+.+|++|+++++.+..+.+.+++.+...+ |+..+.++..++.+.+.|+ -+||.+.+.++++|+
T Consensus 136 RtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 136 RTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYP----LMKRFTYWPQLVLGL 204 (353)
T ss_pred hhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEee----hhhhcchhHHHHHhh
Confidence 689999999999999998888887888777666 4567788888888889999 499999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 233 SYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 233 ~~~~lp~l~~~a~~g~~~~~~-lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
++..-.++||.+.-|...+.. +.+.+.-..|++.+..++..+|.++|.++|+|+.+.++|++...|++.+
T Consensus 205 tfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf 275 (353)
T KOG1381|consen 205 TFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF 275 (353)
T ss_pred hcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence 988777888888888876632 3334444579999999999999999999999999999999998888753
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.87 E-value=2.1e-20 Score=186.05 Aligned_cols=188 Identities=21% Similarity=0.254 Sum_probs=142.0
Q ss_pred cchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccC--CCC
Q 021301 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPY 156 (314)
Q Consensus 80 ~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~-~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n--~~~ 156 (314)
.+.+++.|++++||+.|..+++. +++++.++.+ +. ..+.. .+..+++++++.+++|++||++|+|+|++| +++
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~~--~~~~~-~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGDL--QALLA-ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCCh--HHHHH-HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 35679999999999999988876 4477665544 22 11222 333445667788899999999999999999 489
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHH
Q 021301 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (314)
Q Consensus 157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~ 236 (314)
||++||++++++++.++.+++++++++++++ ++..+.+.+..+++.++|| +++|++++++++.+|+.+..
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~l 332 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALAL-------GPAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLAALYTL 332 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh---HHhcCCccccchHHHHHHHH
Confidence 9999999999999999999998988887765 3445555566677788999 48999999999999988865
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCC
Q 021301 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284 (314)
Q Consensus 237 lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~ 284 (314)
-++.| .+..+ .++..|++.+.+ +..+...+.+...|.++++..|.
T Consensus 333 r~~~G-~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 333 RIIAG-AAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHH-HHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence 44444 44444 666666654333 33456688899999999988886
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.79 E-value=1.3e-19 Score=167.50 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=166.7
Q ss_pred hhHHHHHhhhCcchhHHHHHHHHHHHHHh-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC--CCCC
Q 021301 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (314)
Q Consensus 82 ~~~~~~l~l~RP~~~~~~i~~~l~G~~~a-g~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~--~~Rp 158 (314)
...+.|+|++||+...+++++...|++++ +.++++. +++.-++..++.++.|++||+++...|..++ +.||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~~------l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFPT------LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccCCCcch------hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 55789999999999999999999999876 5566542 3333344556678899999999999999987 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHh-hheecCCCcccccccchhhHHHHHHHHHH
Q 021301 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL 237 (314)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l-~~~Ys~pPl~lK~~~~~g~l~vg~~~~~l 237 (314)
+++|+++|.+|+.++.+....|+.+.++ + .||....++...+++ ..+|| ++||... .|-++|...|.+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~-g-----vNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI 234 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAF-G-----VNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI 234 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeee-c-----ccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence 9999999999999887777666655443 2 278888888877765 68999 6999987 688899988888
Q ss_pred H-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe---chhhHHHHHHHHHHHHHH
Q 021301 238 P-WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF---GPETAKWICVGAIDITQI 309 (314)
Q Consensus 238 p-~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~l---G~~~a~~l~~~li~l~~l 309 (314)
| ++||.+.+|.+++..++++..++.|.+.+...-...=.++..++|.+++++.- -++.+...+..++.++|.
T Consensus 235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~ 310 (409)
T KOG1380|consen 235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYA 310 (409)
T ss_pred CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcc
Confidence 5 66777889999999999999999999876555555556788899999999965 334466777777766653
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=2.1e-18 Score=153.08 Aligned_cols=237 Identities=17% Similarity=0.220 Sum_probs=179.1
Q ss_pred hhhhhhcccccccchhHHHHHhhhCcchhHHHHHHHHHHHHHhCCCCcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhc
Q 021301 68 FNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYD 146 (314)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~l~RP~~~~~~i~~~l~G~~~ag~~~~~~~-~~~~~ll~~~la~~l~~~a~~~iND~~D 146 (314)
..+|-|..-+++...+.+.|+-..||+.+..++.|..+|-+++-.-+|... .....++|.+ +...+++++|.+|.|+|
T Consensus 45 ~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~-avlavh~agnlvntyfd 123 (359)
T KOG4581|consen 45 QDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAF-AVLAVHCAGNLVNTYFD 123 (359)
T ss_pred cccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHh-hheeeecccchhhhhhh
Confidence 346677777777778899999999999999999999999775522222110 1122233443 33446789999999999
Q ss_pred c--cccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHH----HHHHHHHHHHhhheecCCCcccc
Q 021301 147 R--EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSAPPLKLK 220 (314)
Q Consensus 147 ~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~----~~~l~l~~~~l~~~Ys~pPl~lK 220 (314)
. .+|....-+|.+++..+++.++..++..+...++.....+.+. .|. ..++...++--.+.|+.. +.+|
T Consensus 124 f~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytgg-igfk 198 (359)
T KOG4581|consen 124 FIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTGG-IGFK 198 (359)
T ss_pred hhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEecc-cceE
Confidence 7 4888777899999999999999999999998888776555432 231 122333344456899975 5799
Q ss_pred cccchhhHHHHHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHH
Q 021301 221 QNGWIGNFALGASYISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299 (314)
Q Consensus 221 ~~~~~g~l~vg~~~~~lp~-l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l 299 (314)
|..+ |++++-+.+|.+.+ +++..+.|++++.++..+++..+-+-++.+.||.+|.|.||++|+-|+++.+|+..+..+
T Consensus 199 yial-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~il 277 (359)
T KOG4581|consen 199 YIAL-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHIL 277 (359)
T ss_pred EEec-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHH
Confidence 9887 66665555665533 344568899998888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 021301 300 CVGAIDITQISV 311 (314)
Q Consensus 300 ~~~li~l~~l~v 311 (314)
+..+...+|+..
T Consensus 278 y~~llf~py~lf 289 (359)
T KOG4581|consen 278 YAMLLFAPYLLF 289 (359)
T ss_pred HHHHHHHHHHHH
Confidence 999998888753
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.42 E-value=0.38 Score=45.75 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=39.4
Q ss_pred hhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHH---HHHHHHHHHhhCCchHHHHHHH-HHHHHhhheecC
Q 021301 140 TINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAG---LGLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA 214 (314)
Q Consensus 140 ~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~---l~l~~~l~~~~~~~~p~~~~l~-l~~~~l~~~Ys~ 214 (314)
.+||+-|.|.|+.+.+ .=|+. +.++.+..+...+.+++ ++.+..++... ..|.+.+.. +.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~---lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVS---LGEQKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEE---ECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence 6899999999999873 44664 34444444433333222 22333333322 134444433 445556778997
Q ss_pred CC
Q 021301 215 PP 216 (314)
Q Consensus 215 pP 216 (314)
|+
T Consensus 272 ~~ 273 (307)
T PRK13591 272 PF 273 (307)
T ss_pred Cc
Confidence 64
No 55
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=92.67 E-value=1.2 Score=41.81 Aligned_cols=32 Identities=22% Similarity=0.062 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (314)
Q Consensus 131 ~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG 162 (314)
..+.+.+-..+|++.|+|-|+... |.-|+.-|
T Consensus 168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G 200 (284)
T PRK12888 168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFG 200 (284)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhC
Confidence 344556678999999999999876 66666444
No 56
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.97 E-value=2.2 Score=40.50 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~ 177 (314)
..+..+..|+..|.|+|+.|+|+.+.+ ++..+.+..+..+++
T Consensus 188 l~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~~~l~ 229 (303)
T COG1575 188 LIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLYAALL 229 (303)
T ss_pred HHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHHHHHH
Confidence 456678899999999999998765443 444555544433333
No 57
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=91.95 E-value=2 Score=40.73 Aligned_cols=39 Identities=13% Similarity=-0.072 Sum_probs=26.0
Q ss_pred HHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 175 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~ 175 (314)
...+....||+.|+|.|+.+. +.=|.. +.++.+......
T Consensus 195 ~~~~i~~~n~~~D~e~D~~~G~~Tlpv~---lG~~~a~~~~~~ 234 (306)
T TIGR02056 195 AGLGIAIVNDFKSVEGDRALGLQSLPVA---FGIETAAWICVG 234 (306)
T ss_pred HHHHHHHHHHccChHHHHHcCCcCcchh---cChHHHHHHHHH
Confidence 445667899999999999876 444553 344555544443
No 58
>PLN00012 chlorophyll synthetase; Provisional
Probab=91.86 E-value=1.6 Score=42.66 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=22.7
Q ss_pred HHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
...+....||+-|+|.|+... +.-|+.-|.
T Consensus 264 ~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 264 AGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 445678899999999999876 566765553
No 59
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.35 E-value=7.8 Score=36.40 Aligned_cols=53 Identities=13% Similarity=-0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHH
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAG 185 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~ 185 (314)
+..+.+.+...+||+.|+|.|+..+ +.-|. ++.++.+..+..++.+++.++..
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHH
Confidence 3345566778999999999999876 44455 45556666555555555544443
No 60
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=91.29 E-value=2.6 Score=40.56 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHH
Q 021301 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVL 176 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l 176 (314)
+...+...+||+.|+|.|+... +.-|+. +.++.+......+
T Consensus 191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~---~G~~~a~~i~~~~ 232 (331)
T PRK12392 191 FMAIALIIMNDFKSVEGDKEGGLKSLTVM---IGAKNTFLVSFII 232 (331)
T ss_pred HHHHHHHHHHcccchhhHHHcCCeeeEeE---EcHhhHHHHHHHH
Confidence 4456677899999999999876 455663 4445554444433
No 61
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=90.55 E-value=1.8 Score=40.28 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHH
Q 021301 135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG 180 (314)
Q Consensus 135 ~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~ 180 (314)
....+.+||.-|.|.|+.++ +.=|..-| ++.+..+...+..+.
T Consensus 174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG---~~~t~~~~~~~~~~~ 217 (285)
T PRK12872 174 SFIREIVFDIKDIEGDRKSGLKTLPIVLG---KERTLKFLLILNLLF 217 (285)
T ss_pred HHHHHHHHhcccchhHHHcCCcccchhcc---hHHHHHHHHHHHHHH
Confidence 44556889999999999876 55566444 455555444444333
No 62
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=90.52 E-value=5.1 Score=37.75 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 131 ~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
..+.+.+-..+|++.|+|.|+..+ |.-|+.-|.
T Consensus 176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 345566677899999999998765 666775553
No 63
>PRK13592 ubiA prenyltransferase; Provisional
Probab=90.41 E-value=2.2 Score=40.49 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccE---EechhhHHHHHHHHHHHHH
Q 021301 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV---AFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 252 ~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv---~lG~~~a~~l~~~li~l~~ 308 (314)
+.++.++..++.+.+-...||+.|+|-|+.. ++.-|. ++..+.+++++..++.++.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l 105 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV 105 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 3333344455556677889999999999665 555555 4556667766655544443
No 64
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=90.35 E-value=3.7 Score=38.61 Aligned_cols=46 Identities=7% Similarity=-0.071 Sum_probs=30.5
Q ss_pred HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGLG 182 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~l~ 182 (314)
........||.-|+|.|+.+.++. +. ++.++.+..+...+...+.+
T Consensus 173 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y~ 219 (285)
T TIGR02235 173 ATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSYV 219 (285)
T ss_pred HHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHHH
Confidence 455677899999999999987543 33 45566666655544444433
No 65
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=90.18 E-value=4 Score=38.80 Aligned_cols=44 Identities=7% Similarity=-0.112 Sum_probs=28.6
Q ss_pred HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAG 180 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~ 180 (314)
........||+-|+|.|+.+.++. +. ++.++.+..+...+...+
T Consensus 186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 186 ATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWIVGLI 230 (304)
T ss_pred HHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHHHHHH
Confidence 345667899999999999987543 33 455666655444443333
No 66
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.92 E-value=2.2 Score=39.95 Aligned_cols=34 Identities=21% Similarity=-0.006 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
...+.+..-...|++.|+|.|+.++ |.-|+.-|.
T Consensus 173 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3344556667899999999999876 556665553
No 67
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=89.91 E-value=2.9 Score=39.01 Aligned_cols=31 Identities=23% Similarity=0.065 Sum_probs=23.0
Q ss_pred HHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (314)
Q Consensus 132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG 162 (314)
.+.+..-..+||..|+|.|+..+ |.-|+.-|
T Consensus 168 ~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 168 GFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 44455667899999999998766 66676555
No 68
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=89.80 E-value=5 Score=37.37 Aligned_cols=38 Identities=18% Similarity=0.052 Sum_probs=25.2
Q ss_pred HHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHH
Q 021301 135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 175 (314)
Q Consensus 135 ~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~ 175 (314)
..+...+||+.|.|.|+.++ +.=|+. +.++.+..+...
T Consensus 174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~---lG~~~a~~l~~~ 212 (283)
T TIGR01476 174 AHGIMTLNDFKSVEGDRQLGLRSLPVM---IGVKRAAIVAVT 212 (283)
T ss_pred HHHHHHHHhccchhhHHHcCCcCcceE---EcHHHHHHHHHH
Confidence 44567899999999999876 444553 344555544433
No 69
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=89.74 E-value=4.9 Score=38.25 Aligned_cols=29 Identities=24% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301 134 LTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG 162 (314)
...+....||+.|.|.|+... +.-|+.-|
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G 230 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFG 230 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEc
Confidence 344567899999999999875 55566545
No 70
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=88.48 E-value=2.2 Score=40.26 Aligned_cols=35 Identities=23% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhcchhcccccccCC-CCCCcccc
Q 021301 128 IMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (314)
Q Consensus 128 ~la~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG 162 (314)
+++.++-+.+-.++.++.|+|-|+... ++-|+.=|
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 344455566668999999999999876 66666444
No 71
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=88.25 E-value=3.8 Score=38.34 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
+..+.+.+-..+|++.|+|.|+... |.-|+.-|+
T Consensus 168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 4445566678899999999999876 666776663
No 72
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=87.26 E-value=8.3 Score=36.23 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=28.5
Q ss_pred HHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHH
Q 021301 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (314)
Q Consensus 135 ~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~ 180 (314)
.......||.-|.|.|+.+.++.... ++.++.+..+...+...+
T Consensus 177 ~~~il~~Nn~~D~~~D~~~Gk~Tl~v--~lG~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 177 ACAVLNINNLRDIPTDARAGKNTLAV--RLGDARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHcCcccchhHHHcCCEeehh--hcchHhHHHHHHHHHHHH
Confidence 45566799999999999987543222 455666665554444333
No 73
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=87.09 E-value=6.4 Score=36.77 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHhhhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHHHH
Q 021301 133 CLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLG 182 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~l~ 182 (314)
+........||+.|.|.|+.+.+ .=|. ++.++.+..+...+..++.+
T Consensus 179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHHHHHH
Confidence 34556678999999999998764 3344 34455555555444444443
No 74
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=87.07 E-value=3.8 Score=38.02 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhccChHHhHHCCCccccEEech---hhHHHHHHHH
Q 021301 257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICVGA 303 (314)
Q Consensus 257 ~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~---~~a~~l~~~l 303 (314)
.+..++...+....||+.|+|.|++. ++.-|..-|+ +.++.+...+
T Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~ 91 (279)
T PRK12884 43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILL 91 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHH
Confidence 33444556677889999999999988 6777777774 3444444433
No 75
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=86.88 E-value=6 Score=37.45 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=24.4
Q ss_pred HHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
.+.+..-...||+.|+|.|+.++ |.-|+.-|+
T Consensus 185 ~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 185 YPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 34456678999999999999876 666776564
No 76
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.86 E-value=5 Score=37.75 Aligned_cols=34 Identities=24% Similarity=-0.018 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
...+.+.+-..+|++.|+|-|+... |.-|+.-|+
T Consensus 174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~ 208 (290)
T PRK12870 174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR 208 (290)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence 3345566778999999999999876 666665453
No 77
>PLN02922 prenyltransferase
Probab=85.77 E-value=4.7 Score=38.52 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=29.1
Q ss_pred HHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~ 180 (314)
........||+-|.|.|+.++++...+ ++.++.+..+...+...+
T Consensus 200 l~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~~~~ 244 (315)
T PLN02922 200 TTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAVLLL 244 (315)
T ss_pred HHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHHHHH
Confidence 345667899999999999998644322 455666655444443333
No 78
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=85.54 E-value=3.4 Score=39.19 Aligned_cols=51 Identities=16% Similarity=-0.059 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHHHHHH
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLA 184 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~ 184 (314)
+.++.+.+-..+|+..|+|-|+..+ +.-|+.=| +.+......+.++.+++.
T Consensus 185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G----~~a~~~~~~~~~~~v~l~ 236 (300)
T PRK13106 185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG----KWALTFAGLNQLFSVVLD 236 (300)
T ss_pred HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh----hhHHHHHHHHHHHHHHHH
Confidence 4455566678999999999998766 66676444 333343433444444333
No 79
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.34 E-value=5.5 Score=38.02 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHHhhhcchhcccccccCCCCC-CccccccCHHHHHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGL 181 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~~R-pl~sG~is~~~a~~~~~~l~~l~l 181 (314)
..+.....||+-|.|.|+.++++. |. ++.++.+..+...+..++.
T Consensus 201 l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 201 TIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHHH
Confidence 445567899999999999987543 44 4556666655544444443
No 80
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.09 E-value=10 Score=35.75 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
.+.+.+-..+|++.|+|.|+... |.-|+.-|.
T Consensus 172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 34455555788899999998766 677776564
No 81
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=84.81 E-value=25 Score=30.37 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=56.9
Q ss_pred HHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCch---HHHHHHHHHHHHhhhee
Q 021301 136 GYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDF---PTIFWLAVGGSLLSYIY 212 (314)
Q Consensus 136 ~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~---p~~~~l~l~~~~l~~~Y 212 (314)
.+++..++..+..-+.+.+|+ -.++..+.-..+..+.+...++.++.+..+... ...+.+.++-..+...|
T Consensus 21 ~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~aw 94 (161)
T COG3476 21 LGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAW 94 (161)
T ss_pred HHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Confidence 344555555554445554442 233444544455555555555555554433221 22334444455677888
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 021301 213 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264 (314)
Q Consensus 213 s~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~ 264 (314)
| |+-+|-|.+...+..++.. .+..+....+.-..+...-.+-+|+.+|.
T Consensus 95 s--piff~l~~l~~a~i~~lll-~~~vl~l~i~~~~~s~~As~LLiPYllW~ 143 (161)
T COG3476 95 S--PIFFGLRSLGAALIIILLL-WIAVLVLTIIVWPISKTASLLLIPYLLWS 143 (161)
T ss_pred H--HHHHhhcCcchHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8 5556654443333332221 11112222334455655555556777775
No 82
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=83.91 E-value=5.4 Score=37.50 Aligned_cols=50 Identities=10% Similarity=-0.109 Sum_probs=35.8
Q ss_pred HHHHHhhhcchhcccccccCCC-CCCccccccCHHHHHHHHHHHHHHHHHHHHH
Q 021301 134 LTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLGLAGL 186 (314)
Q Consensus 134 ~~~a~~~iND~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~ 186 (314)
..++...+||+-|.|.|+.+.+ .=|. ++.++.+..++.++.+++.++...
T Consensus 172 ~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 172 WGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999998763 3344 566778877777666666555443
No 83
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=83.76 E-value=9.7 Score=35.30 Aligned_cols=39 Identities=23% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHH
Q 021301 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIW 174 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~ 174 (314)
+.+.+-..+||+.|.|.|+.++ |.=|+.-| ++.+.....
T Consensus 168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G---~~~t~~~~~ 207 (276)
T PRK12882 168 LATLAREIIKDVEDIEGDRAEGARTLPILIG---VRKALYVAA 207 (276)
T ss_pred HHHHHHHHHhhhhhhhhHHHcCCccccHHhh---HHHHHHHHH
Confidence 3445668899999999999876 55566444 444444333
No 84
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=81.71 E-value=6.4 Score=37.29 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhccChHHhHHC-CCccccE---EechhhHHHHHHHHHH
Q 021301 259 LYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPV---AFGPETAKWICVGAID 305 (314)
Q Consensus 259 ~~~l~~~~~~~~~d~~Die~D~~a-G~~Tlpv---~lG~~~a~~l~~~li~ 305 (314)
.+++...+....||+.|+|.|+++ .++.=|. ++..+.+..+..++..
T Consensus 54 ~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 54 LFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 334445567889999999999986 2333333 3455556555444333
No 85
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=81.69 E-value=13 Score=35.50 Aligned_cols=34 Identities=24% Similarity=0.034 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
..++.+..-..++++.|+|-|+... |.-|+.-|.
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3344455566778999999999876 666765554
No 86
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=80.63 E-value=15 Score=34.27 Aligned_cols=34 Identities=21% Similarity=-0.016 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
...+.+..-...|++.|+|.|+..+ |.=|+.-|.
T Consensus 170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3444556667889999999999876 666775554
No 87
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=79.48 E-value=19 Score=34.16 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=32.9
Q ss_pred HHHHHHHHH-hCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 101 WGIVCGAAA-SGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 101 ~~~l~G~~~-ag~~~~~~~~~~~~ll~~~la~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
++.+.|+.+ .|++++.. ..+.++++.++-+..-..+-.+.|+|-|+..+ |.-|..-|.
T Consensus 153 ~~~l~gw~Av~g~~~~~~-----~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 153 FAVLIPWAAAEGSLNGGW-----PLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred hHHHHHHHHHhCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 455666543 36666421 11222223344444445666777999999877 777776664
No 88
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=79.25 E-value=9 Score=36.41 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHH
Q 021301 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVIT 171 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~ 171 (314)
+...+...+||.-|.|.|+.++ +.-|+ ++.++.+..
T Consensus 193 ~~~~~~~l~~di~D~egD~~~Gi~Tlav---~lG~~~a~~ 229 (308)
T PRK12887 193 VFTFAIAIFKDIPDMEGDRQYQITTFTL---RLGKQAVFK 229 (308)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcchhH---HHhHHHHHH
Confidence 3445667899999999999876 44455 344454543
No 89
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=77.57 E-value=11 Score=33.81 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=30.3
Q ss_pred hCCCCHHHHHH-HHHHHHHHHHHHHHhhccChHHhHHC-CCccccEEechh
Q 021301 246 FGTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGPE 294 (314)
Q Consensus 246 ~g~~~~~~lll-~l~~~l~~~~~~~~~d~~Die~D~~a-G~~Tlpv~lG~~ 294 (314)
.+..++..+.. .+..++...+....||+.|.|.|+.. +++.-|..-|+-
T Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i 67 (257)
T PF01040_consen 17 GGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI 67 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence 34455543333 23334556677889999999999996 345555544433
No 90
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=77.37 E-value=25 Score=33.13 Aligned_cols=32 Identities=13% Similarity=-0.006 Sum_probs=23.1
Q ss_pred HHHHhhhcchhcccccccCCCC-CCccccccCHHHH
Q 021301 135 TGYTQTINDWYDREIDAINEPY-RPIPSGAISENEV 169 (314)
Q Consensus 135 ~~a~~~iND~~D~~~D~~n~~~-Rpl~sG~is~~~a 169 (314)
.......|++-|+|.|+.+.++ -|. ++.++.+
T Consensus 184 ~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 184 MALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 4556789999999999988743 333 4556666
No 91
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=77.30 E-value=21 Score=33.39 Aligned_cols=42 Identities=17% Similarity=-0.016 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHH
Q 021301 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIW 174 (314)
Q Consensus 130 a~~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~ 174 (314)
+..+...+-.+++|+.|+|-|+.+. +.-|..-| ++.+..++.
T Consensus 175 ~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G---~~~a~~l~~ 217 (289)
T COG0382 175 AAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFG---IKKALALAL 217 (289)
T ss_pred HHHHHHHHHHHHHhccCccchHhcCCcchHHHhC---chhHHHHHH
Confidence 3445566778999999999999987 44455333 344444333
No 92
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=76.73 E-value=41 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHHHHhhhcchhcccccccCC-CCCCccccc
Q 021301 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (314)
Q Consensus 132 ~l~~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~ 163 (314)
.+.+..-..+-...|+|-|++.+ |.-|+.-|.
T Consensus 176 ~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~ 208 (289)
T PLN02809 176 VCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 208 (289)
T ss_pred HHHHHHHHHHHHHhchhhHHhCCCcccchhhcH
Confidence 33343334666667999999877 666775554
No 93
>PRK13595 ubiA prenyltransferase; Provisional
Probab=74.44 E-value=52 Score=31.16 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=34.4
Q ss_pred HHHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 021301 135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAGLL 187 (314)
Q Consensus 135 ~~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l 187 (314)
..+.+++-++.|.|-|+... +.-|. ++.++.+..++..+.+++.++...+
T Consensus 182 ~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~ 232 (292)
T PRK13595 182 SVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPV 232 (292)
T ss_pred HHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHh
Confidence 35677888888999999876 55555 4556667776766666666555444
No 94
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=74.10 E-value=17 Score=34.24 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccE---EechhhHHHHHHHHH
Q 021301 248 TLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPV---AFGPETAKWICVGAI 304 (314)
Q Consensus 248 ~~~~~~ll-l~l~~~l~~~~~~~~~d~~Die~D~~aG~-~Tlpv---~lG~~~a~~l~~~li 304 (314)
..++..++ ..+..++...+-...||+.|+|-|++..+ +.=|. ++.++.+..+...+.
T Consensus 40 ~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~ 101 (296)
T PRK04375 40 VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLG 101 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 34543332 22333445566788999999999998542 23333 445555555544333
No 95
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=73.92 E-value=17 Score=33.69 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhccChHHhHHCCCccccE---EechhhHHHHHHHHHHHH
Q 021301 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV---AFGPETAKWICVGAIDIT 307 (314)
Q Consensus 258 l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv---~lG~~~a~~l~~~li~l~ 307 (314)
+..++...+-...||+-|+|.|++.. ++=|. ++.++.+..+...+..++
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~ 95 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVG 95 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence 34445566778899999999999763 44444 444555655554444443
No 96
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=73.91 E-value=17 Score=33.80 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=32.7
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccE---EechhhHHHHHHHH
Q 021301 248 TLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPV---AFGPETAKWICVGA 303 (314)
Q Consensus 248 ~~~~~~ll-l~l~~~l~~~~~~~~~d~~Die~D~~aG~-~Tlpv---~lG~~~a~~l~~~l 303 (314)
..++..++ ..+..++...+-...||+.|.|-|++..+ +.=|. ++.++.+..+...+
T Consensus 32 ~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (279)
T PRK12869 32 GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL 92 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH
Confidence 34543333 33344455667789999999999998653 23333 34555555444333
No 97
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=73.49 E-value=19 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhccChHHhHHCCCccccEEec---hhhHHHHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFG---PETAKWICVGAI 304 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG---~~~a~~l~~~li 304 (314)
++...+....||+-|+|.|+.. +++=|..-| ++.+..+...+.
T Consensus 47 ~~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~is~~~a~~~~~~l~ 92 (277)
T PRK12883 47 YLGCSGGNTINDYFDYEIDKIN-RPNRPLPRGAMSRKAALYYSLLLF 92 (277)
T ss_pred HHHHHHHhHHHhhhhHhccccC-CCCCCCCCCccCHHHHHHHHHHHH
Confidence 3444567889999999999964 466666544 445555444333
No 98
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=72.20 E-value=17 Score=34.48 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhhccChHHhHHCCC-ccccEE---echhhHHHHHH
Q 021301 247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVA---FGPETAKWICV 301 (314)
Q Consensus 247 g~~~~~~lll~-l~~~l~~~~~~~~~d~~Die~D~~aG~-~Tlpv~---lG~~~a~~l~~ 301 (314)
+..++..++.. +..++...+-...||+.|.|-|++..+ +.=|.. +.++.+..+..
T Consensus 42 ~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 42 GHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 44555433322 234455567789999999999987654 234443 34455544444
No 99
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=68.83 E-value=29 Score=32.20 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhccChHHhHHCCC-ccccE---EechhhHHHHHHHHHHHH
Q 021301 258 LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPV---AFGPETAKWICVGAIDIT 307 (314)
Q Consensus 258 l~~~l~~~~~~~~~d~~Die~D~~aG~-~Tlpv---~lG~~~a~~l~~~li~l~ 307 (314)
+..++...+-...||+.|.|-|++..+ +.=|. ++..+.+..+...+..+.
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 334455667789999999999997542 33344 344555655554444433
No 100
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=66.73 E-value=62 Score=30.77 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=18.9
Q ss_pred HHhhhcchhcccccccCC-CCCCcccc
Q 021301 137 YTQTINDWYDREIDAINE-PYRPIPSG 162 (314)
Q Consensus 137 a~~~iND~~D~~~D~~n~-~~Rpl~sG 162 (314)
+-.++.+..|+|-|+..+ +.-|+.-|
T Consensus 187 g~DiiYa~qD~e~D~~~Gl~Slpv~fG 213 (300)
T PRK12876 187 ANDIIYAIQDLEFDRKEGLFSIPARFG 213 (300)
T ss_pred HHHHHHHHcCHhhHHHcCCccchHHHC
Confidence 445677799999999876 66666444
No 101
>PRK08238 hypothetical protein; Validated
Probab=64.04 E-value=26 Score=35.55 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhccChHHhHHCC-CccccE---EechhhHHHHHHHHHH
Q 021301 259 LYSIAGLGIAIVNDFKSVEGDRAMG-LQSLPV---AFGPETAKWICVGAID 305 (314)
Q Consensus 259 ~~~l~~~~~~~~~d~~Die~D~~aG-~~Tlpv---~lG~~~a~~l~~~li~ 305 (314)
.+++...+..+.||+-|+|.|+++- ++.=|. .+..+.+..+..++..
T Consensus 234 ~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~ 284 (479)
T PRK08238 234 AFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLL 284 (479)
T ss_pred HHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3445566788999999999999973 344454 3444555554444433
No 102
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=60.36 E-value=70 Score=30.51 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHH
Q 021301 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKW 298 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~ 298 (314)
..++++.+.+|+-|+.+ |.+.|++|+|+.++.+.+..
T Consensus 205 ~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 205 NLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 34577899999988877 56668899999999886543
No 103
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=57.24 E-value=87 Score=28.35 Aligned_cols=38 Identities=24% Similarity=0.102 Sum_probs=27.0
Q ss_pred hheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCC
Q 021301 209 SYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL 249 (314)
Q Consensus 209 ~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~ 249 (314)
.+.|+. ..+|++.+ .++++|...|.+.-..|+...|.+
T Consensus 142 ~v~~sR--Vyl~yHt~-sQVv~G~ivG~l~g~~Wf~~v~sl 179 (228)
T KOG3146|consen 142 YVCYSR--VYLKYHTL-SQVVVGAIVGGLVGILWFYLVNSL 179 (228)
T ss_pred HHHHHH--HHHHhccH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 457774 67999998 798988887776555565555543
No 104
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=55.86 E-value=1.4e+02 Score=27.18 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEechh
Q 021301 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPE 294 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~ 294 (314)
.-+++++.+.+|+.|+. +|.+.|+.|+|+.++.+
T Consensus 179 ~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l~ 223 (259)
T cd00685 179 RNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLALR 223 (259)
T ss_pred HHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHHH
Confidence 34567789999988864 57788999999987763
No 105
>PLN02878 homogentisate phytyltransferase
Probab=51.51 E-value=77 Score=29.87 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=24.3
Q ss_pred HHHhhhcchhcccccccCC-CCCCccccccCHHHHHHHH
Q 021301 136 GYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQI 173 (314)
Q Consensus 136 ~a~~~iND~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~ 173 (314)
.....+||+-|.|-|+..+ +.=|+ ++.++.+....
T Consensus 170 ~~i~i~KDi~DieGD~~~Gi~Tlpv---~lG~~~~~~i~ 205 (280)
T PLN02878 170 VVIALFKDIPDVEGDRIFGIRSFSV---RLGQKRVFWLC 205 (280)
T ss_pred HHHHHHhhCcCchhHHHCCCceech---hhChHHHHHHH
Confidence 3456899999999999876 45566 44555555433
No 106
>PLN02890 geranyl diphosphate synthase
Probab=42.70 E-value=3.1e+02 Score=27.42 Aligned_cols=150 Identities=17% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHH-------HHHH
Q 021301 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL-------AVGG 205 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l-------~l~~ 205 (314)
++|.++-+.+|+.| |...++.+|-.........++..+=.++.-++-...-.. ++.++-. ..-|
T Consensus 172 liH~ASLVHDDIiD---~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~------~~~~~~~~s~a~~~l~~G 242 (422)
T PLN02890 172 MIHVASLLHDDVLD---DADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALK------NTEVVSLLATAVEHLVTG 242 (422)
T ss_pred HHHHHHHHHccccc---CCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHH
Q ss_pred HHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHHh------
Q 021301 206 SLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGD------ 279 (314)
Q Consensus 206 ~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~D------ 279 (314)
-++-.......-.--...+--..-=-..+...+.-.+....|.-+-..-.+.-+---+++++.+.+|+-|+.+|
T Consensus 243 q~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK 322 (422)
T PLN02890 243 ETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGK 322 (422)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCC
Q ss_pred -----HHCCCccccEEe
Q 021301 280 -----RAMGLQSLPVAF 291 (314)
Q Consensus 280 -----~~aG~~Tlpv~l 291 (314)
.+.|+.|+|+.+
T Consensus 323 ~~g~DL~eGk~TlPvl~ 339 (422)
T PLN02890 323 GSLSDIRHGVITAPILF 339 (422)
T ss_pred CchhhHhcCCccHHHHH
No 107
>PRK10581 geranyltranstransferase; Provisional
Probab=40.85 E-value=71 Score=30.20 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+.|+. .|.+.|+.|+|+.+|.+.+....-
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~ 264 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHH
Confidence 34667889999999974 567889999999999988765443
No 108
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=39.62 E-value=1.1e+02 Score=24.98 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=24.6
Q ss_pred ccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021301 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW 190 (314)
Q Consensus 149 ~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~ 190 (314)
-|++|+ .|.+=+-+|..|.+..+.+..++++.+++.+.+.
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~ 47 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALL 47 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366664 2444445888998877766666666666555433
No 109
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.05 E-value=1.2e+02 Score=24.49 Aligned_cols=37 Identities=32% Similarity=0.330 Sum_probs=23.7
Q ss_pred ccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 021301 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLL 187 (314)
Q Consensus 149 ~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l 187 (314)
-|++|+ .|.+-+-+|..|.+..+.+....++.+++.+
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l 41 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGLLL 41 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 366664 2444445888998877766666666666554
No 110
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=36.68 E-value=19 Score=32.06 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhccChHHhH----------HCCCccccEEechhhH
Q 021301 262 IAGLGIAIVNDFKSVEGDR----------AMGLQSLPVAFGPETA 296 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~D~----------~aG~~Tlpv~lG~~~a 296 (314)
-++.++.+.||++|+.+|. +.|+.|+|..+..+..
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 3567789999999998887 8999999998875443
No 111
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=35.80 E-value=1.1e+02 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=18.4
Q ss_pred cccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHH
Q 021301 150 DAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAG 185 (314)
Q Consensus 150 D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~ 185 (314)
|++|++.|.+ -.+..|+ ..+...+.+++.++.
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~~ 38 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSGK 38 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHhh
Confidence 5566666666 4788887 334444445554443
No 112
>PLN02776 prenyltransferase
Probab=34.94 E-value=4.3e+02 Score=25.61 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=13.5
Q ss_pred CCCCcccc--ccCHHHHHHHHHHHHHHHHH
Q 021301 155 PYRPIPSG--AISENEVITQIWVLLLAGLG 182 (314)
Q Consensus 155 ~~Rpl~sG--~is~~~a~~~~~~l~~l~l~ 182 (314)
|.-|++.+ +-+..+.......+..++++
T Consensus 185 pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll 214 (341)
T PLN02776 185 RMLSLADATGRRTALVALRNCLYLAPLGFL 214 (341)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 55566653 33444444444444444443
No 113
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=34.11 E-value=2.4e+02 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhheecCCCcccccccchhhHHHHHHHHHHHHHHHHHhhC
Q 021301 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFG 247 (314)
Q Consensus 198 ~~~l~l~~~~l~~~Ys~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g 247 (314)
...+..++.+.+-+|.. .+.|+++|.--...|..|..+.++..+...+
T Consensus 43 ~~~i~~ls~~~GG~~a~--~~~~~kG~l~G~~~Gl~y~~il~lis~~~~~ 90 (116)
T PF12670_consen 43 VVIIYILSVFIGGFYAG--RKAGSKGWLHGLLVGLLYFLILLLISFLFGP 90 (116)
T ss_pred HHHHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44555667777778886 3688888876667787776665554443333
No 114
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=33.34 E-value=59 Score=29.77 Aligned_cols=66 Identities=27% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHH
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAK 297 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~ 297 (314)
..+...|.-.+....|.-....=.+.-+.--+++++.+.+|+.|+.+ |.+.|+.|+|+.++.+.+.
T Consensus 147 g~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~ 223 (260)
T PF00348_consen 147 GSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAR 223 (260)
T ss_dssp HHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCH
No 115
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=32.27 E-value=1.4e+02 Score=27.14 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 252 ~~lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
....++..+=++-.+..+.+|+.|-+ +.+.|++|.-..+|...+....-.++..++-.
T Consensus 40 ~~~~la~aiEllh~asLIhDDI~D~s-~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~ 97 (259)
T cd00685 40 AALRLAAAIELLHTASLVHDDVMDNS-DLRRGKPTVHKVFGNATAILAGDYLLARAFEL 97 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC-cccCCCCcHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34445555556667778889997744 46789999999999988877766666555433
No 116
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=32.27 E-value=63 Score=30.74 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChH-----------HhHHCCCccccEEechh
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPE 294 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~ 294 (314)
..+...+...+....|.-+...-.+.-+.--+++++.+.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 171 a~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 171 ALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 117
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.78 E-value=1.7e+02 Score=23.75 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 021301 174 WVLLLAGLGLAGLLDVWAGH 193 (314)
Q Consensus 174 ~~l~~l~l~l~~~l~~~~~~ 193 (314)
+.-.++|+.+++++..+++.
T Consensus 53 IsGilVGa~iG~llD~~agT 72 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGT 72 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 33445667777777666653
No 118
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=30.75 E-value=99 Score=29.49 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHHh
Q 021301 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (314)
Q Consensus 254 lll~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~v 311 (314)
+-++..+=+.-.+..+-.|+-| ++|.+.|++|....+|...+....-.++.-++-.+
T Consensus 69 ~~~aaavEliH~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l 125 (322)
T COG0142 69 LDLAAAIELIHTASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELL 125 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHH
Confidence 3444444455556677788876 67889999999999999999887777777666544
No 119
>CHL00151 preA prenyl transferase; Reviewed
Probab=27.24 E-value=82 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEechh
Q 021301 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPE 294 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~ 294 (314)
-+++++.+.+|+-|+.+ |.+.|+.|+|+.++.+
T Consensus 206 ~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~ 249 (323)
T CHL00151 206 HLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALT 249 (323)
T ss_pred HHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHh
Confidence 45677899999988654 7788999999998854
No 120
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=26.30 E-value=1.5e+02 Score=25.92 Aligned_cols=13 Identities=8% Similarity=-0.174 Sum_probs=7.8
Q ss_pred CCCccccccCHHH
Q 021301 156 YRPIPSGAISENE 168 (314)
Q Consensus 156 ~Rpl~sG~is~~~ 168 (314)
+...+.|.+.+..
T Consensus 68 ~~itFeG~V~pS~ 80 (173)
T PF12046_consen 68 EVITFEGFVAPSW 80 (173)
T ss_pred cEEEEEEEecCcH
Confidence 3455778776543
No 121
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=25.84 E-value=4.7e+02 Score=23.18 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHH
Q 021301 160 PSGAISENEVITQIWVLLLAGLGLA 184 (314)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~ 184 (314)
.+|.++.++++.+++++..=++..+
T Consensus 122 ~s~~i~~~e~l~L~iAlSiDalavG 146 (206)
T TIGR02840 122 KSGNISGKEALLLGIALSLDAFGAG 146 (206)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 4667899999887776554444433
No 122
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=25.55 E-value=1.1e+02 Score=29.05 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChH-----------HhHHCCCccccEEechh
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPE 294 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~ 294 (314)
..+...+.-.+....|.-+...-.+.-+---+++++.+.+|+.|+. .|.+.|+.|+|+.+..+
T Consensus 175 a~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 175 ASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
No 123
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.30 E-value=2.2e+02 Score=22.38 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=11.5
Q ss_pred HHHHHhhheecCCCcccccc
Q 021301 203 VGGSLLSYIYSAPPLKLKQN 222 (314)
Q Consensus 203 l~~~~l~~~Ys~pPl~lK~~ 222 (314)
..++++..+-+.||+++-+|
T Consensus 57 g~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 57 GAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHhcCCCchhhhc
Confidence 34555556667777655433
No 124
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.76 E-value=5.5e+02 Score=22.09 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHHhhhcchhcccc-----------cccCCCCCCccccccCHHHHHHHHHHHHH
Q 021301 136 GYTQTINDWYDREI-----------DAINEPYRPIPSGAISENEVITQIWVLLL 178 (314)
Q Consensus 136 ~a~~~iND~~D~~~-----------D~~n~~~Rpl~sG~is~~~a~~~~~~l~~ 178 (314)
+...++|++.|++. |.. -|+.++-...|+.+.....+..+.+
T Consensus 18 ~~Lva~~NitDy~sN~~fV~hVlsMdt~-f~~~~l~~RAI~sp~l~~~ay~~II 70 (160)
T PF09933_consen 18 ATLVAFNNITDYGSNFQFVRHVLSMDTT-FPDPPLMWRAITSPWLHHAAYILII 70 (160)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHh-cCCCCcccccCCCHHHHHHHHHHHH
Confidence 44567999999863 332 2444555555665555554444443
No 125
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.73 E-value=3.7e+02 Score=22.03 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=14.2
Q ss_pred HHHhhhcchhcccccccCCCCCCccc
Q 021301 136 GYTQTINDWYDREIDAINEPYRPIPS 161 (314)
Q Consensus 136 ~a~~~iND~~D~~~D~~n~~~Rpl~s 161 (314)
..+.+.|.|+|.| +.+++.-++|+
T Consensus 70 ~~a~g~~r~~~~~--~amrr~~~~p~ 93 (120)
T COG2149 70 LAALGALRWQRVE--RAMRRGFYLPY 93 (120)
T ss_pred HHHHHHHHHHHHH--HHHHcCCCCCc
Confidence 4567789998854 33444444444
Done!