Query 021301
Match_columns 314
No_of_seqs 224 out of 1535
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 55.0 13 0.00044 33.9 4.8 41 261-301 213-264 (304)
2 3p8l_A Geranyltranstransferase 53.7 13 0.00043 34.0 4.5 40 262-301 217-267 (302)
3 3m0g_A Farnesyl diphosphate sy 49.0 18 0.00063 32.8 4.8 41 261-301 206-257 (297)
4 3uca_A Geranyltranstransferase 48.9 16 0.00055 33.7 4.4 40 262-301 242-292 (324)
5 3pde_A Farnesyl-diphosphate sy 48.5 13 0.00045 34.0 3.7 39 262-300 216-265 (309)
6 4f62_A Geranyltranstransferase 48.1 16 0.00056 33.5 4.3 41 261-301 212-263 (317)
7 3ipi_A Geranyltranstransferase 47.7 1.5E+02 0.005 26.7 10.7 164 133-300 73-249 (295)
8 3llw_A Geranyltranstransferase 47.1 20 0.0007 32.7 4.8 40 261-300 220-268 (311)
9 3ts7_A Geranyltranstransferase 46.9 14 0.00046 34.2 3.6 41 261-301 219-270 (324)
10 2h8o_A Geranyltranstransferase 45.7 19 0.00066 33.3 4.4 40 262-301 253-303 (335)
11 3lom_A Geranyltranstransferase 43.8 5.7 0.0002 36.5 0.5 41 261-301 220-271 (313)
12 1rtr_A Geranyltranstransferase 42.7 22 0.00074 32.3 4.2 40 262-301 209-259 (301)
13 2j1p_A Geranylgeranyl pyrophos 40.3 25 0.00086 31.7 4.2 38 262-302 224-261 (293)
14 3p8r_A Geranyltranstransferase 35.6 8 0.00027 35.3 0.1 40 262-301 220-270 (302)
15 3kra_B Geranyl diphosphate syn 33.1 73 0.0025 28.3 6.1 54 256-309 65-118 (274)
16 1rqj_A Geranyltranstransferase 30.6 14 0.00048 33.5 0.9 39 262-300 214-263 (299)
17 3npk_A Geranyltranstransferase 30.3 39 0.0013 30.5 3.8 39 261-299 205-252 (291)
18 3oyr_A Trans-isoprenyl diphosp 28.4 49 0.0017 30.6 4.2 64 232-295 193-267 (345)
19 3aqb_B Component B of hexapren 27.9 49 0.0017 30.2 4.1 36 261-296 201-247 (325)
20 1wy0_A Geranylgeranyl pyrophos 27.7 48 0.0016 30.4 4.0 34 261-294 208-252 (342)
21 3pko_A Geranylgeranyl pyrophos 26.8 49 0.0017 30.4 3.8 34 262-295 215-259 (334)
22 3rmg_A Octaprenyl-diphosphate 26.7 70 0.0024 29.3 4.9 65 232-296 175-249 (334)
23 3mzv_A Decaprenyl diphosphate 25.5 55 0.0019 30.2 3.9 64 232-295 181-255 (341)
24 3lk5_A Geranylgeranyl pyrophos 25.0 64 0.0022 30.2 4.3 35 262-296 248-293 (380)
25 3p8l_A Geranyltranstransferase 24.6 1.1E+02 0.0038 27.6 5.8 58 252-309 72-130 (302)
26 3nf2_A Putative polyprenyl syn 23.7 73 0.0025 29.5 4.4 34 262-295 215-259 (352)
27 1wmw_A Geranylgeranyl diphosph 21.7 59 0.002 29.7 3.3 36 260-295 201-246 (330)
28 2qis_A Farnesyl pyrophosphate 21.6 45 0.0015 31.2 2.5 35 261-295 254-298 (374)
29 3tc1_A Octaprenyl pyrophosphat 20.8 1.7E+02 0.0059 26.4 6.3 54 256-310 62-115 (315)
30 2e8v_A Geranylgeranyl pyrophos 20.8 23 0.00078 32.7 0.3 35 262-296 205-250 (340)
31 3qkc_B Geranyl diphosphate syn 20.4 1.9E+02 0.0064 25.6 6.3 51 256-308 70-120 (273)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=55.05 E-value=13 Score=33.95 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++...-
T Consensus 213 ~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 264 (304)
T 3lsn_A 213 QAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYAL 264 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHH
Confidence 345677899999998865 66789999999999998875543
No 2
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=53.72 E-value=13 Score=34.00 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
-+++++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++...-
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~ 267 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALT 267 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567789999998874 578889999999999998875443
No 3
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=49.02 E-value=18 Score=32.82 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++-..-
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~ 257 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAA 257 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 345677899999999855 67789999999999998865543
No 4
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=48.93 E-value=16 Score=33.65 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
-+++++.+.+|+-|+. .|.+.|+.|+|+.+|.+.++...-
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHH
Confidence 4567789999998874 578889999999999998875543
No 5
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=48.49 E-value=13 Score=34.03 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWIC 300 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~ 300 (314)
-+++++.+.+|+-|+. .|.+.|+.|+|+.+|.+.+.-..
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~ 265 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQAL 265 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHH
Confidence 4567789999998874 57888999999999999886443
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=48.07 E-value=16 Score=33.51 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+-|+. .|.+.|+.|+|+.+|.+.++...-
T Consensus 212 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 263 (317)
T 4f62_A 212 HAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVV 263 (317)
T ss_dssp HHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34567789999998874 467889999999999998875543
No 7
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=47.72 E-value=1.5e+02 Score=26.67 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHhhhcchhcccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHhhhee
Q 021301 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIY 212 (314)
Q Consensus 133 l~~~a~~~iND~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~~~~~p~~~~l~l~~~~l~~~Y 212 (314)
+++.++-+.+|+.| |...++.+|..........++..+=.++..++-+..-...-.-...-....-...|=++-...
T Consensus 73 liH~asLIHDDi~D---~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~~~~~~~~~~~~~~~~~GQ~~dl~~ 149 (295)
T 3ipi_A 73 MMHSASLIHDDLLD---QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAGMDMAEGEVLDLKL 149 (295)
T ss_dssp HHHHHHHHHHHHHH---HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCcCcC---CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHccchHHHHc
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHH-----hHHCCCccc
Q 021301 213 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----DRAMGLQSL 287 (314)
Q Consensus 213 s~pPl~lK~~~~~g~l~vg~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~-----D~~aG~~Tl 287 (314)
...+......--.-..=-|..+ ..+.-.+....|.-+...-.+.-+.--.++++.+.+|+.|+.+ |...|+.|+
T Consensus 150 ~~~~~t~~~y~~~i~~KTg~L~-~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tl 228 (295)
T 3ipi_A 150 EDESFGENDYFKCIYKKTASLF-AISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETL 228 (295)
T ss_dssp ------CHHHHHHHHHHTHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCH
T ss_pred cCCCCCHHHHHHHHHhhhHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccH
Q ss_pred cEEec--------hhhHHHHH
Q 021301 288 PVAFG--------PETAKWIC 300 (314)
Q Consensus 288 pv~lG--------~~~a~~l~ 300 (314)
|+.++ .+.++...
T Consensus 229 p~l~al~~~~~~~le~a~~~a 249 (295)
T 3ipi_A 229 PHIYMKSTSKEEALKKSIDCV 249 (295)
T ss_dssp HHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHH
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=47.05 E-value=20 Score=32.73 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccChHHhH---------HCCCccccEEechhhHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEGDR---------AMGLQSLPVAFGPETAKWIC 300 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~D~---------~aG~~Tlpv~lG~~~a~~l~ 300 (314)
--+++++.+.+|+-|+.+|. +.|+.|+|+.+|.+.++-..
T Consensus 220 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~ 268 (311)
T 3llw_A 220 LKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYA 268 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHH
Confidence 34567889999999998775 57999999999999886443
No 9
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=46.95 E-value=14 Score=34.18 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+-|+.+ |.+.|+.|+|+.+|.+.++...-
T Consensus 219 ~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 270 (324)
T 3ts7_A 219 KCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAE 270 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 345677899999988754 77889999999999998875543
No 10
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=45.71 E-value=19 Score=33.27 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
-+++++.+.+|+-|+.+ |.+.|+.|+|+.+|.+.++...-
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~ 303 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHH
Confidence 45677899999988754 67789999999999888765543
No 11
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=43.83 E-value=5.7 Score=36.53 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
--+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++-..-
T Consensus 220 ~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~ 271 (313)
T 3lom_A 220 KHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIA 271 (313)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHH
Confidence 345677899999988754 67889999999999998875543
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=42.72 E-value=22 Score=32.33 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEechhhHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
-+++++.+.+|+-|+.+ |.+.|+.|+|+.+|.+.++...-
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~ 259 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLT 259 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45677899999988854 56779999999999988765543
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=40.28 E-value=25 Score=31.73 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (314)
Q Consensus 262 l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~ 302 (314)
-+++++.+.+|+-|+.+|. +.|+|+.+|.+.++...--
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~ 261 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEK 261 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHH
Confidence 4567889999999999998 8999999999988765543
No 14
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=35.57 E-value=8 Score=35.33 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHHH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~~ 301 (314)
-+++++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++-..-
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 4566788999998874 467889999999999998875543
No 15
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=33.11 E-value=73 Score=28.33 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (314)
Q Consensus 256 l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l 309 (314)
++..+=+.-.+..+-+|+.+.++|.+.|++|.=..+|...+...--.++..++-
T Consensus 65 ~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 65 AAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 333344445566788999844556679999999999999887666566655543
No 16
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=30.59 E-value=14 Score=33.50 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhHHHHH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWIC 300 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a~~l~ 300 (314)
-+++++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++...
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~ 263 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHH
Confidence 4567789999998875 46677999999999998776443
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=30.35 E-value=39 Score=30.54 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhccChHHhH---------HCCCccccEEechhhHHHH
Q 021301 261 SIAGLGIAIVNDFKSVEGDR---------AMGLQSLPVAFGPETAKWI 299 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~D~---------~aG~~Tlpv~lG~~~a~~l 299 (314)
--+++++.+.+|+.|+.+|. ..|+.|+|+.+|.+.+.-.
T Consensus 205 ~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~ 252 (291)
T 3npk_A 205 LKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKT 252 (291)
T ss_dssp HHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHH
Confidence 34567789999999988764 3689999999999987643
No 18
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=28.37 E-value=49 Score=30.61 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhh
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPET 295 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~ 295 (314)
......+.-.+....|.-+...-.+.-+.-.+++++.+.+|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 193 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 193 AELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
No 19
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=27.89 E-value=49 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhH
Q 021301 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETA 296 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a 296 (314)
--+++++.+.+|+-|+. +|.+.|+.|+|+.++.+.+
T Consensus 201 ~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 34567788999998865 4677899999999987654
No 20
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=27.69 E-value=48 Score=30.43 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEechh
Q 021301 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPE 294 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~ 294 (314)
--+++++.+.+|+-|+. +|.+.|+.|+|+.++.+
T Consensus 208 ~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~ 252 (342)
T 1wy0_A 208 RNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFE 252 (342)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHH
Confidence 34567789999998875 56778999999998875
No 21
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=26.79 E-value=49 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhh
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPET 295 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~ 295 (314)
-+++++.+.+|+.|+. +|.+.|+.|+|+.++.+.
T Consensus 215 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~ 259 (334)
T 3pko_A 215 AIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSH 259 (334)
T ss_dssp HHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHh
Confidence 4567788999997764 578899999999998874
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=26.74 E-value=70 Score=29.34 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChH----------HhHHCCCccccEEechhhH
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE----------GDRAMGLQSLPVAFGPETA 296 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die----------~D~~aG~~Tlpv~lG~~~a 296 (314)
..+...+.-.+....|.-+...-.+.-+.--+++++.+.+|+-|+. +|.+.|+.|+|+.+..+.+
T Consensus 175 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 175 AALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=25.45 E-value=55 Score=30.18 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHH-----------hHHCCCccccEEechhh
Q 021301 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPET 295 (314)
Q Consensus 232 ~~~~~lp~l~~~a~~g~~~~~~lll~l~~~l~~~~~~~~~d~~Die~-----------D~~aG~~Tlpv~lG~~~ 295 (314)
......+.-.+....|.-+...-.+.-+.--+++++.+.+|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 181 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 181 AALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHh
No 24
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=25.02 E-value=64 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETA 296 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a 296 (314)
-+++++.+.+|+-|+. +|.+.|++|+|+.++.+.+
T Consensus 248 ~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 248 DIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 4567789999998874 4778899999999998765
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=24.63 E-value=1.1e+02 Score=27.58 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHh-HHCCCccccEEechhhHHHHHHHHHHHHHH
Q 021301 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGD-RAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (314)
Q Consensus 252 ~~lll~l~~~l~~~~~~~~~d~~Die~D-~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l 309 (314)
...-++..+=+.-.+..+-+|++++++| .+.|++|.-..+|...+...--.++..++-
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~ 130 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQ 130 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHH
Confidence 3344444444555667888999666655 568999999999999887666556555543
No 26
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=23.68 E-value=73 Score=29.48 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhh
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPET 295 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~ 295 (314)
-+++++.+.+|+-|+. +|.+.|+.|+|+.++.+.
T Consensus 215 ~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 4567789999998874 577889999999998765
No 27
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=21.69 E-value=59 Score=29.70 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhccChH----------HhHHCCCccccEEechhh
Q 021301 260 YSIAGLGIAIVNDFKSVE----------GDRAMGLQSLPVAFGPET 295 (314)
Q Consensus 260 ~~l~~~~~~~~~d~~Die----------~D~~aG~~Tlpv~lG~~~ 295 (314)
.--+++++.+.+|+-|+. +|.+.|+.|+|+.++.+.
T Consensus 201 g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~ 246 (330)
T 1wmw_A 201 GLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHh
Confidence 344567789999998874 578889999999988653
No 28
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=21.56 E-value=45 Score=31.15 Aligned_cols=35 Identities=20% Similarity=0.037 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccChHH----------hHHCCCccccEEechhh
Q 021301 261 SIAGLGIAIVNDFKSVEG----------DRAMGLQSLPVAFGPET 295 (314)
Q Consensus 261 ~l~~~~~~~~~d~~Die~----------D~~aG~~Tlpv~lG~~~ 295 (314)
--+++++.+.+|+-|+.+ |.+.|+.|+|+.++.+.
T Consensus 254 ~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~ 298 (374)
T 2qis_A 254 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHh
Confidence 345677899999988865 56789999999998765
No 29
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=20.82 E-value=1.7e+02 Score=26.43 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHHHH
Q 021301 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (314)
Q Consensus 256 l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~l~ 310 (314)
++..+=+.-.+..+-+|+.| ++|.+.|++|.-.++|...+...--.++..++-.
T Consensus 62 ~A~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 115 (315)
T 3tc1_A 62 LCTIVEMIQTASLLHDDVID-KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFE 115 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----------------CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC-CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33344445566778899988 5677889999999999998887766666665543
No 30
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=20.78 E-value=23 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEechhhH
Q 021301 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETA 296 (314)
Q Consensus 262 l~~~~~~~~~d~~Die-----------~D~~aG~~Tlpv~lG~~~a 296 (314)
.+++++.+.+|+-|+. +|.+.|+.|+|+.++.+.+
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 250 (340)
T 2e8v_A 205 LLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFT 250 (340)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 3566788999998874 5788899999999987754
No 31
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=20.42 E-value=1.9e+02 Score=25.57 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEechhhHHHHHHHHHHHHH
Q 021301 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (314)
Q Consensus 256 l~l~~~l~~~~~~~~~d~~Die~D~~aG~~Tlpv~lG~~~a~~l~~~li~l~~ 308 (314)
++..+=+.-.+..+-+|+.|.+. +.|++|.-.++|...+...--.++..++
T Consensus 70 ~A~aiEliH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 120 (273)
T 3qkc_B 70 AAAAVHLMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGL 120 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 33334444556678899998754 6789999999999988766555555554
Done!