BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021304
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36 OS=Arabidopsis
thaliana GN=VPS36 PE=1 SV=1
Length = 440
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 241/315 (76%), Gaps = 21/315 (6%)
Query: 1 MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
+A F A VT+SGRPVL NEVEC LLS++DI+ +DD F L+SG+ ILTTHRL
Sbjct: 8 IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66
Query: 61 LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
+++ S S S +IPLSA+THI+S K+S+KS+FHSPR RFQ +DPG
Sbjct: 67 IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112
Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASAS--LYASDG 177
S+V+T+V RGKGD++ FLSK+WECWRGRAW E S S + + LY +DG
Sbjct: 113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169
Query: 178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
+VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+ SSQ
Sbjct: 170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229
Query: 238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
+ S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct: 230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289
Query: 298 NLIDVYCLFNRARGT 312
+L D+Y FNRARGT
Sbjct: 290 SLTDMYYHFNRARGT 304
>sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 147/277 (53%), Gaps = 27/277 (9%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ + +AIPLS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNNECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPSNK----EPGPFQSSKNSYIRLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
ET P S S + G VR VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ETVPVSQSLQTNKGPQPGRVRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KEKQGDVTEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG 311
H QL++QLA ++ PLE GG+++L +VYCL NRARG
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARG 278
>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 146/277 (52%), Gaps = 27/277 (9%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ + +AIPLS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNNECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPPNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
ET P S S G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM +A
Sbjct: 132 ---ETVPVSQSLQTKKGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIQA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KEKQGDVTEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG 311
H QL++QLA ++ PLE GG+++L +VYCL NRARG
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARG 278
>sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio
GN=vps36 PE=2 SV=1
Length = 382
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 139/267 (52%), Gaps = 26/267 (9%)
Query: 48 LKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPD 107
L G +L+THRLL+ + IPLS + IF +++ + S + + P+
Sbjct: 35 LDVGGVVLSTHRLLWRDQKNHECCICIPLSQV--IFFEEQA-AGIGKSAKIVIHLHPAPE 91
Query: 108 NRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTP-SETGPASA 166
N+ +PG + I + + G E + E + R WE TP S+ P
Sbjct: 92 NK----EPGPYQHSKYSYIKLSFKEHGQIEFYRRLTEEMTQKR---WENTPVSQPIPTGT 144
Query: 167 SASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKM 226
A G R VG+ G+ RK +E + TD+++ EAF+DL+ LM KAKEMV L+ +
Sbjct: 145 GPKA------GRTRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKEMVELSRSI 198
Query: 227 RQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQQLSRQLAD 284
K+ Q + DE + + +LLS+GI +PVT+E+ +G YH QL++QL D
Sbjct: 199 ANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETHGSGTQYHIQLAKQLGD 251
Query: 285 FVKIPLERAGGMINLIDVYCLFNRARG 311
++ PLE GGM+ L +VYCL NRARG
Sbjct: 252 MLQAPLEERGGMMALTEVYCLVNRARG 278
>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus
GN=VPS36 PE=2 SV=1
Length = 386
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 27/277 (9%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F P G +L+THRL++ +AIPLS I I + + S
Sbjct: 27 YDGEEKIKFDP---GTLLLSTHRLIWRDQKNHECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAASNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
E P S + G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ENMPVPQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMVKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG 311
H QL++QLA ++ PLE GG+++L +VYCL NRARG
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARG 278
>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens
GN=VPS36 PE=1 SV=1
Length = 386
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 145/277 (52%), Gaps = 27/277 (9%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ +AI LS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPPNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
E P S S + G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG 311
H QL++QLA +++PLE GG+++L +VYCL NRARG
Sbjct: 242 HMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARG 278
>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis
GN=vps36 PE=2 SV=1
Length = 388
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 146/275 (53%), Gaps = 44/275 (16%)
Query: 50 SGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSK------RSLKSVFH-SPRFRFQV 102
SG +LTTHRL++ +A PLS I +F+ + +S K V H P
Sbjct: 37 SGTLLLTTHRLIWRDQKNHDFCIAFPLSQI--VFTEEQAGGIGKSAKIVVHLHP------ 88
Query: 103 SATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETG 162
ATP+ +PG R + + R G E F ++ E R W
Sbjct: 89 -ATPNK-----EPGPYQTSRYSYVKLSFREHGQIE-FQRRLAEELTQRRWER-------- 133
Query: 163 PASASASASLYASDG----SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKE 218
SASAS S+ + G ++ VG+ G+ RK +E + TD+++ EAF+DL+ LM KAKE
Sbjct: 134 -LSASASPSMQMNKGPQTGRIKAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKE 192
Query: 219 MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQ 276
MV L++ + K+ Q + + DE + + +LLS+GI +PVT+E+ +G YH
Sbjct: 193 MVELSKSIATKI---KDKQGDISEDETI----RFKSYLLSMGIANPVTRETHGSGTHYHM 245
Query: 277 QLSRQLADFVKIPLERAGGMINLIDVYCLFNRARG 311
QL++QLA ++ PLE GG+++L +VYCL NRARG
Sbjct: 246 QLAKQLATMLQAPLEERGGIMSLTEVYCLVNRARG 280
>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila
melanogaster GN=Vps36 PE=2 SV=2
Length = 399
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 26/301 (8%)
Query: 20 LVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSS---SCSSTAVAIPL 76
L PNE + + V I +D D F + G +LTTHRL + + ++ + +PL
Sbjct: 11 LSPNESFVSRDNRVKI-YDGDQKTDF---EDGEVVLTTHRLFWGRPGEIARAAVTLCLPL 66
Query: 77 SAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDW 136
S + + S+ + S F + R + P D PG + R+ I + GK
Sbjct: 67 SYVISV--SEETTASNFFGRKTRIIMHLHPPTS--DKGPGPLDTSRATHIKL--SGKNGL 120
Query: 137 EL-FLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRM---VGVGGLLRKEQ 192
+ F S + E R W T AS+ A+D R+ G+GG+ R +
Sbjct: 121 SVEFHSALRETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLE 180
Query: 193 EMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEM 252
++TD ++ AFQDL+ LM AK+MV +++ + K+ Q +D+E
Sbjct: 181 AKAKATDENIALAFQDLSVLMAMAKDMVGVSKTISSKI----RKQKGEISDDE---TVRF 233
Query: 253 QDWLLSVGIVSPVTKE--SAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRAR 310
+ +L+S+GI PVT++ ++ + Y L+RQ+ + + P+E GGM++L DVYC NRAR
Sbjct: 234 KSYLMSLGIDDPVTRDNFTSNSAYFSSLARQICEMLLDPIEEQGGMMSLADVYCRVNRAR 293
Query: 311 G 311
G
Sbjct: 294 G 294
>sp|Q54T18|VPS36_DICDI Vacuolar protein-sorting-associated protein 36 OS=Dictyostelium
discoideum GN=vps36 PE=3 SV=1
Length = 611
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 13/136 (9%)
Query: 183 GVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSAN 242
G+GG++ + + D+ L E+F DLN LM KAK+MV L+EK++ L + +
Sbjct: 372 GIGGIINQMNKKTLENDKLLSESFSDLNILMEKAKDMVTLSEKLKVTL------EKKTGT 425
Query: 243 DEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFV--KIPLERAGG----- 295
+EE + +LL +GI SPVTK++A + YH QLS+QL+D++ K L++ G
Sbjct: 426 STSTEEEEEFRSFLLEMGIESPVTKKTAKSKYHDQLSKQLSDWIITKNILKQHKGSGNNE 485
Query: 296 MINLIDVYCLFNRARG 311
MI L D+YC+FNRARG
Sbjct: 486 MITLSDLYCIFNRARG 501
>sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps36 PE=3 SV=1
Length = 467
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 149 GRAWAWETTPSETGPASASASASLYAS--------DGSVRMVGVGGLLRKEQEMWESTDR 200
G + +E SET ++ Y + + S+RM G+ L + + R
Sbjct: 179 GSSKFYEAIKSETDEIEKQRYSNKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGR 238
Query: 201 SLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVG 260
+L AFQDL+A + AK+ + LA++ +K+ + +Q + + L ++ +L
Sbjct: 239 TLVHAFQDLDAFFSLAKDTMSLADQFAEKMDGLTGTQQSDKVQQLLNKSNQL--GVLRGN 296
Query: 261 IVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRAR 310
+ V + LY +L + +++ ++ L+ + + + ++NR+R
Sbjct: 297 HLDNVPVSANSRLYDIELCKSISEVLRTRLKADTDTVTMTQAWAIYNRSR 346
>sp|A8ETK6|RPOA_ARCB4 DNA-directed RNA polymerase subunit alpha OS=Arcobacter butzleri
(strain RM4018) GN=rpoA PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 20 LVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTH--RLLFLSSSCSSTAVAIPLS 77
+P EVE +S D + +S P + G I H R L LSSS +A+ +
Sbjct: 9 FLPTEVEIEAIS------DNEAKISAYPFEDGFAITLAHPLRRLLLSSSVGCAPIAVKIE 62
Query: 78 AITHIFSSKRSL 89
+H F S R +
Sbjct: 63 GASHEFDSLRGM 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,406,675
Number of Sequences: 539616
Number of extensions: 4209073
Number of successful extensions: 14108
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14069
Number of HSP's gapped (non-prelim): 17
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)