Query 021304
Match_columns 314
No_of_seqs 137 out of 228
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7p_D VPS36P, YLR417W; ESCRT- 100.0 5.7E-69 1.9E-73 538.6 5.1 290 4-312 1-451 (566)
2 2hth_B Vacuolar protein sortin 100.0 2.1E-35 7E-40 249.0 15.6 135 4-158 3-137 (140)
3 2cay_A VPS36 PH domain, vacuol 100.0 3.5E-35 1.2E-39 248.7 11.5 130 3-153 8-138 (145)
4 3cuq_B Vacuolar protein-sortin 100.0 5.2E-31 1.8E-35 237.4 5.9 109 197-312 1-111 (218)
5 3cuq_A Vacuolar-sorting protei 99.2 2.2E-11 7.5E-16 110.0 9.7 82 218-312 22-110 (234)
6 1u5t_A Appears to BE functiona 99.2 4.9E-11 1.7E-15 107.7 7.9 117 180-309 2-126 (233)
7 1zsq_A Myotubularin-related pr 97.5 0.00043 1.5E-08 69.2 11.4 67 14-86 3-70 (528)
8 1lw3_A Myotubularin-related pr 97.5 0.00046 1.6E-08 70.5 11.2 68 13-86 74-142 (657)
9 1u5t_B Defective in vacuolar p 96.9 0.00027 9.2E-09 60.7 1.9 22 291-312 34-56 (169)
10 1zyi_A Methylosome subunit pic 96.7 0.0014 4.8E-08 56.3 4.9 79 17-105 14-94 (171)
11 1pfj_A TFIIH basal transcripti 96.7 0.012 4.1E-07 46.7 9.5 53 48-106 19-71 (108)
12 3hsa_A Pleckstrin homology dom 96.3 0.015 5.2E-07 47.4 8.4 99 14-147 22-124 (126)
13 1y5o_A TFB1, RNA polymerase II 94.7 0.28 9.5E-06 39.1 9.8 90 47-148 10-105 (115)
14 2yf0_A Myotubularin-related pr 93.4 0.25 8.7E-06 49.1 9.1 54 28-86 7-60 (512)
15 3b77_A Uncharacterized protein 91.1 0.75 2.6E-05 39.8 8.0 56 17-88 19-82 (193)
16 2acm_A Mucin-1; auto-catalytic 47.3 15 0.00051 25.8 2.9 28 271-299 31-58 (66)
17 4hhu_A OR280; engineered prote 40.9 51 0.0018 26.3 5.5 23 207-229 92-114 (170)
18 1wlx_A Alpha-actinin 4; three- 32.2 76 0.0026 25.5 5.4 42 182-227 45-86 (129)
19 1jei_A Emerin; membrane protei 30.5 61 0.0021 22.0 3.9 32 248-280 7-39 (53)
20 1loi_A Cyclic 3',5'-AMP specif 29.4 18 0.00062 20.4 0.8 9 297-305 1-9 (26)
21 2kes_A Synphilin-1; synphillin 27.0 77 0.0026 20.5 3.6 22 210-231 4-25 (48)
22 2eqb_B RAB guanine nucleotide 24.9 2.3E+02 0.0078 21.5 6.8 35 198-232 48-83 (97)
23 2pmr_A Uncharacterized protein 23.5 64 0.0022 24.1 3.2 38 192-229 6-45 (87)
24 2v36_A Gamma-glutamyltranspept 21.2 41 0.0014 31.8 2.2 29 271-303 212-240 (376)
25 2qmc_A GGT, gamma-glutamyltran 21.1 41 0.0014 31.8 2.2 28 271-302 227-254 (377)
26 2dg5_A Gamma-glutamyltranspept 20.4 37 0.0013 32.0 1.6 28 272-303 217-244 (366)
No 1
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=5.7e-69 Score=538.64 Aligned_cols=290 Identities=18% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCCCccccccCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC-CCceEEEecCceeee
Q 021304 4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHI 82 (314)
Q Consensus 4 ~~~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~-~~~s~~lpL~~i~~~ 82 (314)
|+||++|++|+||||+|.++|++++++++||||+|++| +++||+|++|||||||||+|+.+ .+.|++|||++|.++
T Consensus 1 m~~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~K---i~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~ 77 (566)
T 1w7p_D 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV 77 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccccccCCcccCCCceEEEeecccccccCCcC---CccccCceEEEEeeeEEEecCCCCcceEEEEEhHHccee
Confidence 78999999999999999999999999999999999997 99999999999999999999987 458999999999999
Q ss_pred cccCCccccccCCCceeeeeecCCCCC----------------C--------------CC--------------------
Q 021304 83 FSSKRSLKSVFHSPRFRFQVSATPDNR----------------I--------------FD-------------------- 112 (314)
Q Consensus 83 ~~~~~~lr~~~~s~ki~~~l~~~p~~~----------------~--------------~d-------------------- 112 (314)
++.++||| +||||.+++.+++.++ | +|
T Consensus 78 e~~agflk---sSpKI~L~l~~~~~~~~~~~~~~~~~~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~ 154 (566)
T 1w7p_D 78 NYSSGFLT---RSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYEL 154 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeecccc---CCCceEEeecCcccccccCCCCCCcccccccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhh
Confidence 99999977 6888887665432100 0 00
Q ss_pred -----------------------------------------------------C--------------------------
Q 021304 113 -----------------------------------------------------S-------------------------- 113 (314)
Q Consensus 113 -----------------------------------------------------~-------------------------- 113 (314)
+
T Consensus 155 ~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl~~CEiCg~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (566)
T 1w7p_D 155 TKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLA 234 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhccccCCCcccCccccccccCCCCCcccccCChhhhcccccCCcCCCcccccccccccccccccccccccccccc
Confidence 0
Q ss_pred ---CCCCc------CCCCccEEEEEEecCCChHhHHHHHHHHHhhccccccCCCCCCC------CCCCcccc--------
Q 021304 114 ---DPGRV------TGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETG------PASASASA-------- 170 (314)
Q Consensus 114 ---~p~~~------~~s~~~~iklSFr~~G~~~~F~~~L~~aL~~k~W~~~~~~~~~~------~~~~~~~~-------- 170 (314)
.|+|. .++...+|||||| +||++.||++|+++|.+++|+ ..++... ++.+....
T Consensus 235 ~~~sp~p~~~s~~~~~~~~~~iKLSFR-~gg~~~F~~~L~~aL~~~~W~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 311 (566)
T 1w7p_D 235 RNKSSHSALSSSSSTGSSTEFVQLSFR-KSDGVLFSQATERALENILTE--KNKHIFNQNVVSVNGVDMRKGASSHEYNN 311 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcccccccCCCccCceEEEEEc-CCCchHHHHHHHHHHHHHHhh--hCCCccCCCcccccccccccccccccccc
Confidence 01110 0113469999999 556699999999999999998 5544321 11000000
Q ss_pred ccccCCCcccccchhHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccHH
Q 021304 171 SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKE 250 (314)
Q Consensus 171 ~~~~~~~~~~~~GI~gier~~e~~~~~~~~~l~~Af~DL~~LM~~Akemv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~ 250 (314)
..+......+.+||+||||+.|+++++|+..|++||+||++||++|||||+||++|+++++++.+ +++++++.....
T Consensus 312 ~~~~~~~~~~~~GI~gler~~e~~~~~~~~~i~~Af~DL~~LM~~AkemV~La~~~~~~~~~~~~---~~s~~~~~~e~~ 388 (566)
T 1w7p_D 312 EVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITMKTKTL---NLQDESTVNEPK 388 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCcccCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCccchhhH
Confidence 00112233478999999999999999999999999999999999999999999999999987633 222222211112
Q ss_pred HHHHHHHhcCCCCCcccccc--hhhhHHHHHHHHHHHhhhhh----hc-cCceeehhHHHHHHhhc-cCC
Q 021304 251 EMQDWLLSVGIVSPVTKESA--GALYHQQLSRQLADFVKIPL----ER-AGGMINLIDVYCLFNRA-RGT 312 (314)
Q Consensus 251 ~~~s~l~slGi~~pvt~d~~--~~~y~~eLArela~~l~~~l----~k-~ggmitL~Dvy~~~NRA-RG~ 312 (314)
+++++| |||||++ +..||.||||||+|||.... ++ .||||+|+||||+|||| ||+
T Consensus 389 ~~~s~L-------~Vtrd~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g 451 (566)
T 1w7p_D 389 TRRPLL-------ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG 451 (566)
T ss_dssp --------------CCSSCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTT
T ss_pred hhHhhc-------ccchhhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCC
Confidence 466666 8999965 79999999999999998766 77 99999999999999999 954
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=100.00 E-value=2.1e-35 Score=249.05 Aligned_cols=135 Identities=21% Similarity=0.313 Sum_probs=118.3
Q ss_pred CCCCccccccCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCCCCceEEEecCceeeec
Q 021304 4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIF 83 (314)
Q Consensus 4 ~~~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~~~~s~~lpL~~i~~~~ 83 (314)
|+.|++ |||+|.+||.+|+++++|+||+|+.| +++|+|+||||||||||+|+.+...|++|||.+|.+++
T Consensus 3 M~r~~~------~~p~L~~~E~il~~~~~V~Ly~g~~k----~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e 72 (140)
T 2hth_B 3 MDRFVW------TSGLLEINETLVIQQRGVRIYDGEEK----IKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIE 72 (140)
T ss_dssp --CCEE------CCSCCCTTCCEEEEEEEEEEEETTCS----SCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEE
T ss_pred ccceec------CCCccCCCceEEEEcCCEEEecCCCC----CCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeee
Confidence 788988 99999999999999999999999997 89999999999999999999888899999999999999
Q ss_pred ccCCccccccCCCceeeeeecCCCCCCCCCCCCCcCCCCccEEEEEEecCCChHhHHHHHHHHHhhccccccCCC
Q 021304 84 SSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTP 158 (314)
Q Consensus 84 ~~~~~lr~~~~s~ki~~~l~~~p~~~~~d~~p~~~~~s~~~~iklSFr~~G~~~~F~~~L~~aL~~k~W~~~~~~ 158 (314)
.+++++ ++||||++++.++|.+ ..|+|...+.+.+|||||| +|+.++|+++|.++|.+|+|+ ..|
T Consensus 73 ~~~~~f---~~s~Ki~l~l~~~~~~----~~~gp~~~s~~~~~kLsFr-~Gg~~eF~~~L~~al~~k~W~--~~~ 137 (140)
T 2hth_B 73 EQAAGI---GKSAKIVVHLHPAPPN----KEPGPFQSSKNSYIKLSFK-EHGQIEFYRRLSEEMTQRRWE--NMP 137 (140)
T ss_dssp EECCTT---SSCCEEEEEECCCCCC----SSSCCCSTTSCCEEEEEET-TSCHHHHHHHHHHHHHHCCC------
T ss_pred eecccc---ccCceEEEEecCCCcc----CCCCCcccccCcEEEEEEc-CCCChHHHHHHHHHHHHhhhc--ccC
Confidence 999985 4789999999876653 4678877788899999999 556699999999999999999 544
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=100.00 E-value=3.5e-35 Score=248.75 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=117.1
Q ss_pred cCCCCccccccCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCCCC-ceEEEecCceee
Q 021304 3 SNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSS-TAVAIPLSAITH 81 (314)
Q Consensus 3 ~~~~~~~~~~t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~~~-~s~~lpL~~i~~ 81 (314)
-|++|+++++|+||||+|.+||.+|+.+++|+||+|++| ++++++|+||||||||||+|..+.. .||++||.+|.+
T Consensus 8 ~~~~~~~~~~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k---~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~ 84 (145)
T 2cay_A 8 HMEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAY 84 (145)
T ss_dssp GGGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEE---CTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEE
T ss_pred hhhhcchhhhccCCCcccCCCCEEEEEcCCcceecCCCC---CcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheee
Confidence 379999999999999999999999999999999999997 7999999999999999999988744 899999999999
Q ss_pred ecccCCccccccCCCceeeeeecCCCCCCCCCCCCCcCCCCccEEEEEEecCCChHhHHHHHHHHHhhcccc
Q 021304 82 IFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWA 153 (314)
Q Consensus 82 ~~~~~~~lr~~~~s~ki~~~l~~~p~~~~~d~~p~~~~~s~~~~iklSFr~~G~~~~F~~~L~~aL~~k~W~ 153 (314)
++.++++++ +++||++++.++ | +...+||||||++ |.++|+++|.+++.++.||
T Consensus 85 ~e~~~~~fg---~s~Ki~l~~~p~----~----------~~~~~~KLsFk~G-Ga~eF~~~l~~al~~~~~~ 138 (145)
T 2cay_A 85 VNYSSGFLT---RSPRLILFFKDP----S----------SSTEFVQLSFRKS-DGVLFSQATERALENILTE 138 (145)
T ss_dssp EEEECSSSS---SSCEEEEEESSC----S----------STTCCEEEEESSS-CCHHHHHHHHHHHHHHHHC
T ss_pred eeEEcCccc---cCceEEEEecCC----C----------CCceEEEEEEcCC-CchHHHHHHHHHHHHHHHh
Confidence 999999865 579998776543 1 3468999999955 5599999999999999998
No 4
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=99.96 E-value=5.2e-31 Score=237.38 Aligned_cols=109 Identities=47% Similarity=0.822 Sum_probs=90.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccHHHHHHHHHhcCCCCCccccc--chhhh
Q 021304 197 STDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274 (314)
Q Consensus 197 ~~~~~l~~Af~DL~~LM~~Akemv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~~~~s~l~slGi~~pvt~d~--~~~~y 274 (314)
+||..|++||+||++||++|||||+||++|++++.... ++++++|+ .+|++++.++||.+|||++. +++.|
T Consensus 1 ~~~~~~~~af~DL~~LM~~Ak~mv~la~~~~~~~~~~~---~~~~~~e~----~~f~~m~~slGvd~Pl~~~~~~s~~~f 73 (218)
T 3cuq_B 1 ETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQ---GDITEDET----IRFKSYLLSMGIANPVTRETYGSGTQY 73 (218)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHGGGCC-------------CCS----HHHHHHHHHHTCCCHHHHTTSSCSCHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCchHH----HHHHHHHHHcCCCCcchhhccCcccHH
Confidence 47889999999999999999999999999999998753 33444554 37999999999999999985 48999
Q ss_pred HHHHHHHHHHHhhhhhhccCceeehhHHHHHHhhccCC
Q 021304 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGT 312 (314)
Q Consensus 275 ~~eLArela~~l~~~l~k~ggmitL~Dvy~~~NRARG~ 312 (314)
|.|||+||+|||...+++.||||+|.||||+||||||+
T Consensus 74 ~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~ 111 (218)
T 3cuq_B 74 HMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGM 111 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999995
No 5
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=99.24 E-value=2.2e-11 Score=109.99 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccccHHHHHHHHHhcCCCCCccccc------c-hhhhHHHHHHHHHHHhhhhh
Q 021304 218 EMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES------A-GALYHQQLSRQLADFVKIPL 290 (314)
Q Consensus 218 emv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~~~~s~l~slGi~~pvt~d~------~-~~~y~~eLArela~~l~~~l 290 (314)
.|+..|.+.+..|++. ++. ..+|++++.++||. |++.++ . -..||.|||.||+|+|....
T Consensus 22 ~L~~FA~kH~~eI~~d----------p~f--R~~F~~mc~siGVD-Plas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr 88 (234)
T 3cuq_A 22 NLEEFASKHKQEIRKN----------PEF--RVQFQDMCATIGVD-PLASGKGFWSEMLGVGDFYYELGVQIIEVCLALK 88 (234)
T ss_dssp HHHHHHHHHHHHHHHC----------HHH--HHHHHHHHHHHTCC-TTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccccC----------HHH--HHHHHHHHHHcCCC-cccCCcchhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 3566778887777753 221 23699999999997 888875 1 37999999999999999999
Q ss_pred hccCceeehhHHHHHHhhccCC
Q 021304 291 ERAGGMINLIDVYCLFNRARGT 312 (314)
Q Consensus 291 ~k~ggmitL~Dvy~~~NRARG~ 312 (314)
++.||||+|.||||++||+||.
T Consensus 89 ~~nGGli~L~el~~~~~r~Rg~ 110 (234)
T 3cuq_A 89 HRNGGLITLEELHQQVLKGRGK 110 (234)
T ss_dssp HHHSSEEEHHHHHHHHHHTTTT
T ss_pred HhcCCeeEHHHHHHHHHHhcCC
Confidence 9999999999999999999995
No 6
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=99.16 E-value=4.9e-11 Score=107.70 Aligned_cols=117 Identities=15% Similarity=0.254 Sum_probs=66.7
Q ss_pred cccchhHHHhchHHHHHHhhHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCCCccccccHHHHHHHHH
Q 021304 180 RMVGVGGLLRKEQEMWESTDRSLQE-AFQDLNALMNKAKE-MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLL 257 (314)
Q Consensus 180 ~~~GI~gier~~e~~~~~~~~~l~~-Af~DL~~LM~~Ake-mv~La~~~~~k~~~~~~~~~~~~~~e~~~~~~~~~s~l~ 257 (314)
|++||++|.+..+++-++-...+.+ =++-|..-|+--++ |+..|.+. ++++.+|++. ..+|+++..
T Consensus 2 r~~G~~a~~~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kH----------k~eI~~dp~f--R~~F~~mc~ 69 (233)
T 1u5t_A 2 KQFGLAAFDELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKH----------NSELQASPEF--RSKFMHMCS 69 (233)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------TTTTTTCHHH--HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HhhcccCHHH--HHHHHHHHH
Confidence 5689999983222333222233222 22333333333332 22222222 2344455542 236999999
Q ss_pred hcCCCCCcc-ccc----c-hhhhHHHHHHHHHHHhhhhhhccCceeehhHHHHHHhhc
Q 021304 258 SVGIVSPVT-KES----A-GALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRA 309 (314)
Q Consensus 258 slGi~~pvt-~d~----~-~~~y~~eLArela~~l~~~l~k~ggmitL~Dvy~~~NRA 309 (314)
++||. |++ .++ . ...||-|||.||+|+|....++.||||+|.||||++||+
T Consensus 70 siGVD-PLa~s~kg~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~ 126 (233)
T 1u5t_A 70 SIGID-PLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK 126 (233)
T ss_dssp HHTCC-HHHHTTSSGGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT
T ss_pred HcCCC-CCccCCccccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh
Confidence 99997 999 543 2 489999999999999999999999999999999999997
No 7
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=97.54 E-value=0.00043 Score=69.24 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC-CCceEEEecCceeeecccC
Q 021304 14 SSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHIFSSK 86 (314)
Q Consensus 14 ~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~-~~~s~~lpL~~i~~~~~~~ 86 (314)
++..|.|.|||.++...++|.+... ..+...|+||||+|||||..... ....+.|||..|.+++...
T Consensus 3 ~~~~~~lLpGE~i~~~~~~V~~~~~------~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~ 70 (528)
T 1zsq_A 3 SMEEPPLLPGENIKDMAKDVTYICP------FTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIG 70 (528)
T ss_dssp -CCCCCCCTTCCEEEEEEEEEEEET------TTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEEC
T ss_pred CCCCCccCCCCeEEEecCCEEEeCC------CCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcC
Confidence 4567889999999999889986532 22356999999999999998644 3456899999999998654
No 8
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=97.51 E-value=0.00046 Score=70.49 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=51.9
Q ss_pred cCCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC-CCceEEEecCceeeecccC
Q 021304 13 TSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHIFSSK 86 (314)
Q Consensus 13 t~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~-~~~s~~lpL~~i~~~~~~~ 86 (314)
+....|.|.|||.++...++|.+.. .. .+...|+||||+|||||..... ....+.|||..|..++...
T Consensus 74 ~~~~~~~LLPGE~v~~~~~~V~~~~-p~-----~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~ 142 (657)
T 1lw3_A 74 AEMEEPPLLPGENIKDMAKDVTYIC-PF-----TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIG 142 (657)
T ss_dssp ---CCCCCCTTCCEEEEEEEEEEEE-TT-----TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEEC
T ss_pred ccCCCCccCCCeeEEEEeCCEEEec-CC-----CCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecC
Confidence 3446788999999999999997543 22 2346899999999999997643 3456799999999998654
No 9
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.93 E-value=0.00027 Score=60.70 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.5
Q ss_pred hccCceeehhHHHHHHhhc-cCC
Q 021304 291 ERAGGMINLIDVYCLFNRA-RGT 312 (314)
Q Consensus 291 ~k~ggmitL~Dvy~~~NRA-RG~ 312 (314)
+..|-||+|+||||+|||| ||+
T Consensus 34 ~~GG~~I~L~dl~~~~nra~R~g 56 (169)
T 1u5t_B 34 DTNYMIITLVDLYAMYNKSMRIG 56 (169)
T ss_dssp CCCCCCEETTHHHHHHHHTTTSS
T ss_pred hcCceeEEHHHHHHHHHHhhcCC
Confidence 4578999999999999999 964
No 10
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=96.74 E-value=0.0014 Score=56.25 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=47.9
Q ss_pred CeeecCC--ceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCCCCceEEEecCceeeecccCCccccccC
Q 021304 17 RPVLVPN--EVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFH 94 (314)
Q Consensus 17 rpvL~~~--E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~~~~s~~lpL~~i~~~~~~~~~lr~~~~ 94 (314)
.+++-|. |.+++.+.+|.++.++.. ...|+||+|+-||+|++. ....++||...|.-=-...-. ..|.
T Consensus 14 ~~~~~p~~~E~v~~~~~~v~~vl~~~~------~g~GtLyVt~~~l~W~~~--~~~G~sI~YpsIsLHAIsrd~--~~~p 83 (171)
T 1zyi_A 14 KSFPPPGSAEGLRQQQPETEAVLNGKG------LGTGTLYIAESRLSWLDG--SGLGFSLEYPTISLHAVSRDL--NAYP 83 (171)
T ss_dssp -------------CBCSSEEEEBTTBC------CCEEEEEEETTEEEEEET--TTEEEEESSCCCSEEECCSSC--SSCC
T ss_pred ccCCCCCCccceEEEcCCEEEEECCCc------cCceEEEEEcCEEEEEcC--CCcEEEeecCeEEEEEEecCC--CCCC
Confidence 3556677 999999999999998653 257999999999999987 556788888877632221111 1245
Q ss_pred CCceeeeeecC
Q 021304 95 SPRFRFQVSAT 105 (314)
Q Consensus 95 s~ki~~~l~~~ 105 (314)
++-|=|++...
T Consensus 84 ~~clY~Qld~~ 94 (171)
T 1zyi_A 84 REHLYVMVNAK 94 (171)
T ss_dssp SCCEEEEEECC
T ss_pred CceEEEEEecc
Confidence 56666666643
No 11
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=96.67 E-value=0.012 Score=46.66 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=42.1
Q ss_pred CcceEEEEeecceEEeeCCCCCceEEEecCceeeecccCCccccccCCCceeeeeecCC
Q 021304 48 LKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATP 106 (314)
Q Consensus 48 ~q~G~l~LTshRIi~~d~~~~~~s~~lpL~~i~~~~~~~~~lr~~~~s~ki~~~l~~~p 106 (314)
.++|+|||++-||.|.++......+++++++|.+...+-. +++||.+++-..+
T Consensus 19 K~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~------~k~KVqLqi~l~~ 71 (108)
T 1pfj_A 19 KQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPE------GKAKIQLQLVLHA 71 (108)
T ss_dssp SCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCS------SSSSCEEEEECSS
T ss_pred cCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCC------CCccEEEEEEEeC
Confidence 3469999999999999977766778999999998765444 5788887776544
No 12
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=96.35 E-value=0.015 Score=47.36 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCCCeeecCCceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC--CCc--eEEEecCceeeecccCCcc
Q 021304 14 SSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC--SST--AVAIPLSAITHIFSSKRSL 89 (314)
Q Consensus 14 ~sgrpvL~~~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~--~~~--s~~lpL~~i~~~~~~~~~l 89 (314)
..=.++|.+||.+...-.-| .+.+..|++|||.+|... +++ -.++|.+.|.++..+....
T Consensus 22 ~~~~~~L~~gE~I~~ayk~i----------------RD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~ 85 (126)
T 3hsa_A 22 AELSPILGDNEELQLAYXMV----------------RDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGT 85 (126)
T ss_dssp HHHGGGSCTTCCEEEEEECS----------------SEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEEST
T ss_pred HHHHHhcCCCCEEEEEehhc----------------CceEEEccchheEEecCcCcccceEEEEeccceeeEEEEecccc
Confidence 33467889999987754322 367999999999999865 222 3499999999997665431
Q ss_pred ccccCCCceeeeeecCCCCCCCCCCCCCcCCCCccEEEEEEecCCChHhHHHHHHHHH
Q 021304 90 KSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECW 147 (314)
Q Consensus 90 r~~~~s~ki~~~l~~~p~~~~~d~~p~~~~~s~~~~iklSFr~~G~~~~F~~~L~~aL 147 (314)
+-....|.+.++.. ...+++-|+++-+-.++++.|.+.+
T Consensus 86 --fDlDaElki~isg~-----------------~~pi~~~f~k~~di~~i~k~La~~v 124 (126)
T 3hsa_A 86 --FDMDAELXLWISGQ-----------------HEPLVXELXRGTDVVGIQXTIARYA 124 (126)
T ss_dssp --TSCEEEEEEEETTC-----------------SSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred --ccCCceEEEEEcCC-----------------ceEEEEeccCcccHHHHHHHHHHHh
Confidence 11234455444321 1228999997766677777776554
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=94.67 E-value=0.28 Score=39.09 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCcceEEEEeec----ceEEeeCCCCCceEEEecCceeeecccCCccccccCCCceeeeeecCCCC-C-CCCCCCCCcCC
Q 021304 47 PLKSGHFILTTH----RLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDN-R-IFDSDPGRVTG 120 (314)
Q Consensus 47 ~~q~G~l~LTsh----RIi~~d~~~~~~s~~lpL~~i~~~~~~~~~lr~~~~s~ki~~~l~~~p~~-~-~~d~~p~~~~~ 120 (314)
..++|.|+|+.- -|.|..-.. ...++|||..|.+++-.-. .+||+-+.+-..+.. + -.|. .+++..
T Consensus 10 KKk~G~lti~eD~~p~~l~W~p~~g-~~~isI~l~~It~LQqTp~------ts~KvmLKI~~k~~~~~~~~~~-~~~~~~ 81 (115)
T 1y5o_A 10 EKVSGIIAINEDVSPAELTWRSTDG-DKVHTVVLSTIDKLQATPA------SSEKMMLRLIGKVDESKKRKDN-EGNEVV 81 (115)
T ss_dssp SSCEEEEEEECSSSSCEEEEEESSS-SCEEEEESTTCSEEEECCT------TCSSEEEEEEECSCCSSSCCCC-SSCCSS
T ss_pred EecccEEEEccCCCcceEEEEECCC-CccEEEEhhhhhhhhcCCC------CCCceEEEEEEeccccccccCC-CcCCCC
Confidence 356999999998 899998433 6779999999999875555 588888777554410 0 0000 111222
Q ss_pred CCccEEEEEEecCCChHhHHHHHHHHHh
Q 021304 121 LRSVVITVVVRGKGDWELFLSKMWECWR 148 (314)
Q Consensus 121 s~~~~iklSFr~~G~~~~F~~~L~~aL~ 148 (314)
+......|+|..... -.+++++|+
T Consensus 82 ~~p~~~~F~FtnR~~----~d~IKd~Lq 105 (115)
T 1y5o_A 82 PKPQRHMFSFNNRTV----MDNIKMTLQ 105 (115)
T ss_dssp CCCEEEEEEESCHHH----HHHHHHHHH
T ss_pred CCcceEEEEeCCHHH----HHHHHHHHH
Confidence 345678999996433 455555554
No 14
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=93.44 E-value=0.25 Score=49.10 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=36.1
Q ss_pred EeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCCCCceEEEecCceeeecccC
Q 021304 28 NLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSK 86 (314)
Q Consensus 28 ~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~~~~s~~lpL~~i~~~~~~~ 86 (314)
-..++|.|++.... .-+...|+|+||+|||||.+... .-+-||+..|..++...
T Consensus 7 ~~v~~V~l~~~~~~---~~~~~~GtL~lTn~~LiF~~~~~--~e~wi~~~~I~~VeK~~ 60 (512)
T 2yf0_A 7 TKVEQVKLLDRFST---SNKSLTGTLYLTATHLLFIDSHQ--KETWILHHHIASVEKLA 60 (512)
T ss_dssp EEEEECCCC-----------CCEEEEEECSSEEEEEESSS--CEEEEEGGGEEEEEECC
T ss_pred CccccEEEEeccCC---CCCceeEEEEEECCEEEEeCCCC--CceEecccceeEEEEec
Confidence 34678888764221 13466999999999999998433 34688999999997543
No 15
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=91.12 E-value=0.75 Score=39.80 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=38.4
Q ss_pred CeeecC--CceEEEeecceeeeeCCCCCCCCCCCcceEEEEeecceEEeeCCC--C-C-ceEEEecC--ceeeecccCCc
Q 021304 17 RPVLVP--NEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC--S-S-TAVAIPLS--AITHIFSSKRS 88 (314)
Q Consensus 17 rpvL~~--~E~~l~~~~~V~Ly~g~~k~~~~~~~q~G~l~LTshRIi~~d~~~--~-~-~s~~lpL~--~i~~~~~~~~~ 88 (314)
.+.|.+ ||.+.+.-.-+ ...+.+|++|||.+|... + + .-.++|.+ .|.++..+...
T Consensus 19 ~~~Ll~EdgE~I~~ayk~i----------------rD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAG 82 (193)
T 3b77_A 19 DDYVLHEDGEKIYFLIKSK----------------TDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAG 82 (193)
T ss_dssp GGGSCGGGTCCEEEEEECS----------------SEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCC
T ss_pred hhhccCCCCCEEeeeeeec----------------ceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecc
Confidence 345556 88877653322 236899999999999755 2 2 23489999 99998766543
No 16
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=47.34 E-value=15 Score=25.75 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhccCceeeh
Q 021304 271 GALYHQQLSRQLADFVKIPLERAGGMINL 299 (314)
Q Consensus 271 ~~~y~~eLArela~~l~~~l~k~ggmitL 299 (314)
...|+|||-|.|.+.+..+. |.++.+.|
T Consensus 31 st~YYqeLqr~is~L~lqIy-kq~~FLgl 58 (66)
T 2acm_A 31 STDYYQELQRDISEMFLQIY-KQGGFLGL 58 (66)
T ss_dssp TSHHHHHHHHHHHHHHHHHC-TTTTEEEE
T ss_pred chHHHHHHHHHHHHHHHHHH-ccCCeeee
Confidence 56899999999999987554 34455544
No 17
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=40.86 E-value=51 Score=26.26 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021304 207 QDLNALMNKAKEMVMLAEKMRQK 229 (314)
Q Consensus 207 ~DL~~LM~~Akemv~La~~~~~k 229 (314)
.||++|-.--|||++-|++|+..
T Consensus 92 ddlea~ekalkemirqarkfagt 114 (170)
T 4hhu_A 92 DDLEALEKALKEMIRQARKFAGT 114 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHHHHHhhcce
Confidence 59999999999999999988743
No 18
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=32.20 E-value=76 Score=25.46 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.3
Q ss_pred cchhHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021304 182 VGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMR 227 (314)
Q Consensus 182 ~GI~gier~~e~~~~~~~~~l~~Af~DL~~LM~~Akemv~La~~~~ 227 (314)
.-|-+|.+.+++- ..+|.+|-.|+++|+.-+.++-++++++.
T Consensus 45 eEI~~L~~~He~F----~~~L~~a~~e~~~i~~i~~el~~~~~~~~ 86 (129)
T 1wlx_A 45 EEIEGLISAHDQF----KSTLPDADREREAILAIHKEAQRIAESNH 86 (129)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677777777765 58999999999999999999999988875
No 19
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=30.55 E-value=61 Score=21.98 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhcCCCC-CcccccchhhhHHHHHH
Q 021304 248 SKEEMQDWLLSVGIVS-PVTKESAGALYHQQLSR 280 (314)
Q Consensus 248 ~~~~~~s~l~slGi~~-pvt~d~~~~~y~~eLAr 280 (314)
+.++++.-|..+|+.. ||+ ++.-.+|.+.|.+
T Consensus 7 sd~eLr~~L~~~G~~~GPIt-~sTRklYeKKL~~ 39 (53)
T 1jei_A 7 SDTELTTLLRRYNIPHGPVV-GSTRRLYEKKIFE 39 (53)
T ss_dssp CHHHHHHHHSSSCCSCCCCC-SGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCC-cccHHHHHHHHHH
Confidence 4567999999999953 665 2346799988876
No 20
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=29.40 E-value=18 Score=20.36 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=7.6
Q ss_pred eehhHHHHH
Q 021304 297 INLIDVYCL 305 (314)
Q Consensus 297 itL~Dvy~~ 305 (314)
|+|+|.||-
T Consensus 1 mplvdffce 9 (26)
T 1loi_A 1 MPLVDFFCE 9 (26)
T ss_dssp CCHHHHHHH
T ss_pred CchHHHHHH
Confidence 689999994
No 21
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=27.00 E-value=77 Score=20.55 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021304 210 NALMNKAKEMVMLAEKMRQKLL 231 (314)
Q Consensus 210 ~~LM~~Akemv~La~~~~~k~~ 231 (314)
+.-|+.|.+.|+|-+.+++.-.
T Consensus 4 etcmslasqvvkltkql~eqt~ 25 (48)
T 2kes_A 4 ETCMSLASQVVKLTKQLKEQTV 25 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999886544
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.87 E-value=2.3e+02 Score=21.53 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 021304 198 TDRSLQEAFQDLN-ALMNKAKEMVMLAEKMRQKLLA 232 (314)
Q Consensus 198 ~~~~l~~Af~DL~-~LM~~Akemv~La~~~~~k~~~ 232 (314)
.-..|+.-++||. +|+.-|..||+-++.=+..+..
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~ 83 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEI 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788887 5999999999999776655443
No 23
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=23.49 E-value=64 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 021304 192 QEMWESTDRSLQEAFQDLNA--LMNKAKEMVMLAEKMRQK 229 (314)
Q Consensus 192 e~~~~~~~~~l~~Af~DL~~--LM~~Akemv~La~~~~~k 229 (314)
.++.+.-...+.+||+.++. |...|++++.+|+++-+-
T Consensus 6 ~Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~D 45 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDD 45 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence 44556666888899999986 788999999999998753
No 24
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=21.18 E-value=41 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHhhhhhhccCceeehhHHH
Q 021304 271 GALYHQQLSRQLADFVKIPLERAGGMINLIDVY 303 (314)
Q Consensus 271 ~~~y~~eLArela~~l~~~l~k~ggmitL~Dvy 303 (314)
..-|.=+||++|.+++. +.||+||+.|+=
T Consensus 212 ~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa 240 (376)
T 2v36_A 212 DAFYKGKFAKTLSDTVQ----DFGGSMTEKDLE 240 (376)
T ss_dssp HHHHSHHHHHHHHHHHH----HTTCCCCHHHHH
T ss_pred ccccCCHHHHHHHHHHH----HcCCCCCHHHHh
Confidence 34565689999999886 579999999983
No 25
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A* 2nqo_A
Probab=21.11 E-value=41 Score=31.83 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhccCceeehhHH
Q 021304 271 GALYHQQLSRQLADFVKIPLERAGGMINLIDV 302 (314)
Q Consensus 271 ~~~y~~eLArela~~l~~~l~k~ggmitL~Dv 302 (314)
..-|.=+||+.|.+++. +.||+||+.|+
T Consensus 227 ~~FY~G~iA~~iv~~~~----~~GG~lt~~DL 254 (377)
T 2qmc_A 227 KGFYQGQVAELIEKDMK----KNGGIITKEDL 254 (377)
T ss_dssp HHHHSHHHHHHHHHHHH----HTTCCCCHHHH
T ss_pred HhhhCCHHHHHHHHHHH----HcCCCCCHHHH
Confidence 34555689999998886 57999999998
No 26
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=20.44 E-value=37 Score=32.01 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhccCceeehhHHH
Q 021304 272 ALYHQQLSRQLADFVKIPLERAGGMINLIDVY 303 (314)
Q Consensus 272 ~~y~~eLArela~~l~~~l~k~ggmitL~Dvy 303 (314)
.-|.=+||++|.+++. +.||+||+.|+=
T Consensus 217 ~FY~G~iA~~iv~~~~----~~GG~lt~~DLa 244 (366)
T 2dg5_A 217 EFYKGTIAEQIAQEMQ----KNGGLITKEDLA 244 (366)
T ss_dssp HHHTSHHHHHHHHHHH----HTTCCCCHHHHH
T ss_pred hccCCHHHHHHHHHHH----HcCCCCCHHHHh
Confidence 3444489999988876 589999999973
Done!