BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021305
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 236/306 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L +++E+++ +I
Sbjct: 17 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 77 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 136
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 137 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 196
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 197 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 256
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP+ P + +P
Sbjct: 257 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 316
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 317 EVLQRV 322
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 236/306 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L +++E+++ +I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP+ P + +P
Sbjct: 258 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 318 EVLQRV 323
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 160/336 (47%), Gaps = 37/336 (11%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
+D + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVD 273
G +GRP K D CYS+WV ++L ++ + N +K +IL QD GG + PD D
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318
Query: 274 VFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRI 309
H YFG+ GLSL+E G+ + PA + R+
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVSTRTSERL 354
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT F ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT F ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCFCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 408
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 52 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 289
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 290 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 349
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 350 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 387
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 51 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 108
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 109 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 168
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 169 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 228
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 229 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 288
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 289 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 348
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 349 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 386
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 52 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 289
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 290 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 349
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 350 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 387
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 52 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 289
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 290 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 349
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 350 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 387
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 72 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 129
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 130 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 189
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 190 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 249
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 250 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 309
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 310 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 369
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 370 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 407
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 408
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 76 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 133
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 134 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 193
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 194 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 253
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 254 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 313
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 314 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 373
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 374 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 411
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 408
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 112/282 (39%), Gaps = 64/282 (22%)
Query: 79 PHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQNEDGSFSGDI------------- 123
P++ TL A+ L + I++ K+ N++ Q +DG G
Sbjct: 92 PNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDY 151
Query: 124 --WGEVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYIVSCKNLDGGFG 168
+GE D R Y+A+ +++ D I++ ++I+ N++GGF
Sbjct: 152 KQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFS 211
Query: 169 CTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS---------------- 212
T ESH G FC + +L + K WL RQV
Sbjct: 212 STIMDESHLGFTFCAIASLKLLNYPLEKLKS-TKEWLIHRQVDYPENLYPKDGNGDGNGN 270
Query: 213 ------------GGLNGRPEKLPDVCYSWWVLSSLIMID--RVHWINKDKLVKFILD-CQ 257
GG NGR KL D CYSWW SL ID + ++ +K ++L+ Q
Sbjct: 271 GDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQ 330
Query: 258 DMENGGISDRPDDAVDVFHTYFGVAGLSLLEYP--GLKPIDP 297
+ GG PD D H+Y +A LSL + L+ I+P
Sbjct: 331 NQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINP 372
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 133/337 (39%), Gaps = 90/337 (26%)
Query: 37 YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVLYTLSAVQVLAL 93
+W + +LD+LG LD ++ V+S +L GGF G + PH+L T ++V LA+
Sbjct: 93 FWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAI 152
Query: 94 FDK-------VDILDADK-VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL 145
D+ A + + + + + DG F GEVD R +Y C L + L
Sbjct: 153 AGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTY---CLLVVATLL 209
Query: 146 DKI------NVDKAVEYIVSCKNLDGGFGCT------------------PG-----GESH 176
D I NVDK ++ +C+ +GGF C P E+H
Sbjct: 210 DIITPELLHNVDK---FVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAH 266
Query: 177 SGQIFCCVGA------LAIAGALHHVDKDLLGWWLCERQ---VKSGGLNGRPEKLPDVCY 227
G C + + + + +D + W +Q ++ GG GR KL D CY
Sbjct: 267 GGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCY 326
Query: 228 SWW------VLSSLIMIDRVHWINKDK--------------------------LVKFILD 255
SWW V L+ ++ + K + L +F L
Sbjct: 327 SWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLV 386
Query: 256 CQDME---NGGISDRPDDAVDVFHTYFGVAGLSLLEY 289
+ GG+ D+P D +HT ++GLS+ ++
Sbjct: 387 AAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH 423
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
D+ Y++ Q ++G + G + V Y+ +C IL R+D+ ++K Y++ +
Sbjct: 16 DRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLC--HILDRVDRDRMEKIRRYLLHEQR 73
Query: 163 LDGGFGCTPGG 173
DG + PGG
Sbjct: 74 EDGTWALYPGG 84
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA--LFDKVDILDADKVSNYIVGLQN 114
+ ++L CQ + G + G + + T+ A VL + D+VD +K+ Y++ Q
Sbjct: 18 AVEYLLSCQKDEGYWWGPLLSN----VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQR 73
Query: 115 EDGSFSGDIWGEVD---TRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD 164
EDG+++ G D T +Y+A+ + + + D+ + KA+ +I S ++
Sbjct: 74 EDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKALRFIQSQGGIE 124
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
D+ Y++ Q ++G + G + V Y+ +C IL R+D+ ++K Y++ +
Sbjct: 16 DRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLC--HILDRVDRDRMEKIRRYLLHEQR 73
Query: 163 LDGGFGCTPGG 173
DG + PGG
Sbjct: 74 EDGTWALYPGG 84
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVL--ALFDKVDILDADKVSNYIVGLQN 114
+ ++L CQ + G + G + + T+ A VL + D+VD +K+ Y++ Q
Sbjct: 18 AVEYLLSCQKDEGYWWGPLLSN----VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQR 73
Query: 115 EDGSFSGDIWGEVD---TRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD 164
EDG+++ G D T +Y+A+ + + + D+ + KA+ +I S ++
Sbjct: 74 EDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKALRFIQSQGGIE 124
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
D+ Y++ Q ++G + G + V Y+ +C IL R+D+ ++K Y++ +
Sbjct: 16 DRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLC--HILDRVDRDRMEKIRRYLLHEQR 73
Query: 163 LDGGFGCTPGG 173
DG + PGG
Sbjct: 74 EDGTWALYPGG 84
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVL--ALFDKVDILDADKVSNYIVGLQN 114
+ ++L CQ + G + G + + T+ A VL + D+VD +K+ Y++ Q
Sbjct: 18 AVEYLLSCQKDEGYWWGPLLSN----VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQR 73
Query: 115 EDGSFSGDIWGEVD---TRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD 164
EDG+++ G D T +Y+A+ + + + D+ + KA+ +I S ++
Sbjct: 74 EDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKALRFIQSQGGIE 124
>pdb|4F13|A Chain A, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
pdb|4F13|B Chain B, Alginate Lyase A1-Iii Y246f Complexed With Tetrasaccharide
Length = 353
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH--DPHVLYTLSAVQVLAL 93
A + L+T+ +D E V+ W+ + F G + H + ++ +
Sbjct: 143 AAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPGGDTSCCNNHSYWRGQEATIIGV 202
Query: 94 FDKVDILDADKVSNYI--VGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSIL 142
K D L + Y+ +GL NEDGSF ++ E F A+ L+++
Sbjct: 203 ISKDDELFRWGLGRYVQAMGLINEDGSFVHEMTRHEQSLHFQNYAMLPLTMI 254
>pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From
Sphingomonas Species A1 At 1.78a Resolution
pdb|1HV6|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii Complexed With
Trisaccharide Product
Length = 351
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH--DPHVLYTLSAVQVLAL 93
A + L+T+ +D E V+ W+ + F G + H + ++ +
Sbjct: 143 AAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPGGDTSCCNNHSYWRGQEATIIGV 202
Query: 94 FDKVDILDADKVSNYI--VGLQNEDGSF 119
K D L + Y+ +GL NEDGSF
Sbjct: 203 ISKDDELFRWGLGRYVQAMGLINEDGSF 230
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
+ VGLQ EDG ++GD G + + C ++ + L ++ V Y+ S + DGG
Sbjct: 82 TFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIP-LPAGYREEIVRYLRSVQLPDGG 140
Query: 167 FG 168
+G
Sbjct: 141 WG 142
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
+ VGLQ EDG ++GD G + + C ++ + L ++ V Y+ S + DGG
Sbjct: 82 TFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIP-LPAGYREEIVRYLRSVQLPDGG 140
Query: 167 FG 168
+G
Sbjct: 141 WG 142
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 226 CYSWWVLSSLIMIDRVHWINKDKLVKF----ILDCQDMENGG 263
C S W S+++ ++ ++ I +KLV ++DC +N G
Sbjct: 23 CGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,398,116
Number of Sequences: 62578
Number of extensions: 464781
Number of successful extensions: 1214
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 44
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)