BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021307
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 19/271 (7%)
Query: 46 VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
+ DQG++ +G + +R++ GS+ T+ LD +SGSG S N+Y G+F A IKL SG ++
Sbjct: 17 LGFDQGYTNLWGPQH-QRVDQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 74
Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVS---TGREEKFYFW 162
GV+ +FYLSN YP HDEIDIE LG + LQTN++ G GRE + + W
Sbjct: 75 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLW 134
Query: 163 FDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWAT 222
FDPT +H Y+I W I+F VD+VP+R +P + +P +PM VY ++WD S WAT
Sbjct: 135 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPMWVYGSVWDASSWAT 192
Query: 223 HGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQ 282
GKY +Y+Y PFV + ++ C + +ASS +P + LS+Q
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVE------------AASSCNPASVSPYGQLSQQ 240
Query: 283 QVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
QVAA++W ++ M Y+YC D TR + PEC
Sbjct: 241 QVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 159/268 (59%), Gaps = 18/268 (6%)
Query: 46 VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
+ DQG++ +G + +R++ GS+ T+ LD +SGSG S N+Y G+F A IKL SG ++
Sbjct: 18 LGFDQGYTNLWGPQH-QRVDQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 75
Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDP 165
GV+ +FYLSN YP HDEIDIE LG + LQTN++ G S RE + + WFDP
Sbjct: 76 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEG--SGDREMRIHLWFDP 133
Query: 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGG 225
T +H Y+I W I+F VD+VP+R +P + +P +P+ VY ++WD S WAT G
Sbjct: 134 TQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWATENG 191
Query: 226 KYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVA 285
KY +Y+Y PFV + ++ C + +ASS +P + LS+QQVA
Sbjct: 192 KYKADYRYQPFVGKYEDFKLGSCTVE------------AASSCNPASVSPYGQLSQQQVA 239
Query: 286 ALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
A++W ++ M Y+YC D TR + PEC
Sbjct: 240 AMEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 159/271 (58%), Gaps = 19/271 (7%)
Query: 46 VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
+ DQG++ +G + +R++ GS+ T+ LD +SGSG S N+Y G+F A IKL SG ++
Sbjct: 20 LGFDQGYTNLWGPQH-QRVDQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 77
Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVS---TGREEKFYFW 162
GV+ +FYLSN YP HDEIDIE LG + LQTN++ G GRE + + W
Sbjct: 78 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLW 137
Query: 163 FDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWAT 222
FDPT +H Y+I W I+F VD+VP+R +P + +P +P+ VY ++WD S WAT
Sbjct: 138 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWAT 195
Query: 223 HGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQ 282
GKY +Y+Y PFV + ++ C + +ASS +P + LS+Q
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCTVE------------AASSCNPASVSPYGQLSQQ 243
Query: 283 QVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
QVAA++W ++ M Y+YC D TR + PEC
Sbjct: 244 QVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/268 (41%), Positives = 160/268 (59%), Gaps = 18/268 (6%)
Query: 46 VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
+ DQG++ +G + +R++ GS+ T+ LD +SGSG S N+Y G+F A IKL SG ++
Sbjct: 41 LGFDQGYTNLWGPQH-QRVDQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 98
Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDP 165
GV+ +FYLSN YP HDEIDIE LG + LQTN++ G S RE + + WFDP
Sbjct: 99 GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEG--SGDREMRIHLWFDP 156
Query: 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGG 225
T +H Y+I W I+F VD+VP+R +P + +P +P+ VY ++WD S WAT G
Sbjct: 157 TQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPLWVYGSVWDASSWATENG 214
Query: 226 KYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVA 285
KY +Y+Y PFV + ++ SC+ +ASS +P + LS+QQVA
Sbjct: 215 KYKADYRYQPFVGKYEDFKL------------GSCTVEAASSCNPASVSPYGQLSQQQVA 262
Query: 286 ALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
A++W ++ M Y+YC D TR + PEC
Sbjct: 263 AMEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 145/257 (56%), Gaps = 12/257 (4%)
Query: 59 SNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADS 118
++K N G+ L LDK +G+G S+ Y G FS +KL G S+G V AFYLS+ +S
Sbjct: 28 DHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNS 87
Query: 119 YPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNS 178
HDEID E LG+ ++LQTN++ G RE++ Y WFDPT + HYYS++WN
Sbjct: 88 ---EHDEIDFEFLGNRTGQPYILQTNVFTGG--KGDREQRIYLWFDPTKEFHYYSVLWNM 142
Query: 179 HHIVFLVDNVPLREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFV 237
+ IVFLVD+VP+R F N +P ++PM +Y ++W+ WAT GG ++ APF+
Sbjct: 143 YMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFI 202
Query: 238 ASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFY 297
AS + GC S A C+ A D ++F L Q L W R+K Y
Sbjct: 203 ASYRSFHIDGCEASVEAKF---CATQGARWWDQ---KEFQDLDAFQYRRLSWVRQKYTIY 256
Query: 298 SYCKDTTRFKVMPPECK 314
+YC D +R+ MPPECK
Sbjct: 257 NYCTDRSRYPSMPPECK 273
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 20/193 (10%)
Query: 30 AYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNG----SMATLALDKSSGSGLVSR 85
+Y PS D + + V F+ + +NV N+G + + A +K + S
Sbjct: 9 SYFNPSTWEKADGYSNGGV---FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRST 65
Query: 86 NKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNI 145
N Y +G + ++K ++G+V +F+ ++ DEIDIE LG D +Q N
Sbjct: 66 NIYGYGLYEVSMKPAK--NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNY 120
Query: 146 YANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPS 205
Y NG G E+ FD + H Y+ W +I + VD V L+ ++ PS
Sbjct: 121 YTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-LKH-----TATANIPS 172
Query: 206 KPMSVYVTIWDGS 218
P + + +W+G+
Sbjct: 173 TPGKIMMNLWNGT 185
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 68 SMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEID 127
S+ + + +K G G S Y +G + +K + G+V AFY S + DEID
Sbjct: 37 SLTSPSYNKFDGGGNQSVQTYGYGLYEVNMKPAKNV--GIVSAFYTSTGPTDGTPWDEID 94
Query: 128 IELLGHDKRNDWVLQTNIYANGGVSTGREEKFY-FWFDPTAQHHYYSIIWNSHHIVFLVD 186
IE LG D +Q N Y NG G EK FD +H Y+ W + I + VD
Sbjct: 95 IEFLGKDTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVD 148
Query: 187 NVPLREFPNTGAFSSVYPSKPMSVYVTIWDGS 218
+ +T ++ P P +Y+++W G+
Sbjct: 149 G----QLKHTA--TTQIPQTPGKIYMSLWAGA 174
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 59 SNVKRINNG----SMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLS 114
+NV N+G + + A +K + S N Y +G + ++K ++G+V +F+
Sbjct: 37 NNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAK--NTGIVSSFFTY 94
Query: 115 NADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSI 174
++ DEIDIE LG D +Q N Y NG G E+ FD + H Y+
Sbjct: 95 TGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAF 149
Query: 175 IWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGS 218
W +I + VD V L+ ++ PS P + + +W+G+
Sbjct: 150 DWQPGYIKWYVDGV-LKH-----TATANIPSTPGKIMMNLWNGT 187
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 84 SRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQT 143
S N Y +G + ++K ++G+V +F+ ++ DEIDIE LG D +Q
Sbjct: 8 STNIYGYGLYEVSMKPAK--NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 144 NIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY 203
N Y NG G E+ FD + H Y+ W +I + VD V L+ ++
Sbjct: 63 NYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-LKH-----TATANI 114
Query: 204 PSKPMSVYVTIWDGS 218
PS P + + +W+G+
Sbjct: 115 PSTPGKIMMNLWNGT 129
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 84 SRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQT 143
S N Y +G + ++K ++G+V +F+ ++ DEIDIE LG D +Q
Sbjct: 8 STNIYGYGLYEVSMKPAK--NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 144 NIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY 203
N Y NG G E+ FD + H Y+ W +I + VD V L+ ++
Sbjct: 63 NYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-LKH-----TATANI 114
Query: 204 PSKPMSVYVTIWDGS 218
PS P + + +W+G+
Sbjct: 115 PSTPGKIMMNLWNGT 129
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 84 SRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQT 143
S N Y +G + ++K ++G+V +F+ ++ DEIDIE LG D +Q
Sbjct: 8 STNIYGYGLYEVSMKPAK--NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 144 NIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY 203
N Y NG G E+ FD + H Y+ W +I + VD V L+ ++
Sbjct: 63 NYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-LKH-----TATANI 114
Query: 204 PSKPMSVYVTIWDGS 218
PS P + + +W+G+
Sbjct: 115 PSTPGKIMMNLWNGT 129
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 59 SNVKRINNG----SMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLS 114
+NV N+G + + A +K + S N Y +G + ++K ++G+V +F+
Sbjct: 37 NNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAK--NTGIVSSFFTY 94
Query: 115 NADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSI 174
++ D+IDI+ LG D +Q N Y NG G E+ FD + H Y+
Sbjct: 95 TGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAF 149
Query: 175 IWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGS 218
W +I + VD V L+ ++ PS P + + +W+G+
Sbjct: 150 DWQPGYIKWYVDGV-LKH-----TATANIPSTPGKIMMNLWNGT 187
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 78 SGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRN 137
+G+ +R+K+ +G + +++ + G+V +F+ + DEIDIE LG D
Sbjct: 80 AGAEYRTRDKFGYGLYQ--VRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK 137
Query: 138 DWVLQTNIYANGGVSTGREEKFY-FWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNT 196
+Q N Y N S G E Y FD + H Y+ W ++I +LVD +
Sbjct: 138 ---VQFNYYTN---SAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYR---- 187
Query: 197 GAFSSVYPSKPMSVYVTIWDG 217
A+ + P P + + IW G
Sbjct: 188 -AYDDI-PVHPGKIMLNIWPG 206
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 104 SSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWF 163
++G+V +F+ ++ DEIDIE LG D +Q N Y NG G E+ F
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGF 55
Query: 164 DPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGS 218
D + H Y+ W +I + VD V L+ ++ PS P + + +W+G+
Sbjct: 56 DASKGFHTYAFDWQPGYIKWYVDGV-LKH-----TATANIPSTPGKIMMNLWNGT 104
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 90 HGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANG 149
+G+ +++ ++G+V +F+ + DEIDIE LG D +Q N Y NG
Sbjct: 94 YGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNG 150
Query: 150 GVSTGREEKFY-FWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPM 208
G EK FD +H Y+ W + I + VD + +T ++ P+ P
Sbjct: 151 ---AGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTA--TNQIPTTPG 201
Query: 209 SVYVTIWDGS 218
+ + +W+G+
Sbjct: 202 KIMMNLWNGT 211
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 90 HGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANG 149
+G+ + + + G+V +F+ + DEIDIE LG D +Q N Y NG
Sbjct: 70 YGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNG 126
Query: 150 GVSTGREEKFY-FWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPM 208
G EK FD +H Y+ W + I + VD + +T ++ P P
Sbjct: 127 ---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTA--TTQIPQTPG 177
Query: 209 SVYVTIWDGS 218
+ + +W+G+
Sbjct: 178 KIMMNLWNGA 187
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 59 SNVKRINNG----SMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLS 114
+NV N+G + + A +K + S N Y +G + ++K ++G+V +F+
Sbjct: 125 NNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAK--NTGIVSSFFTY 182
Query: 115 NADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANG 149
++ DEIDIE LG D +Q N Y NG
Sbjct: 183 TGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2WGS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WHI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|4ACF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate
Length = 486
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 34/162 (20%)
Query: 123 HDEIDIELLGHDKRNDWVLQTNIYANGGVST----GREEKFYFW----FDPTAQHHYYSI 174
HD +E D RN N + G++ G E +FY + FD A +Y +
Sbjct: 104 HDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEV 163
Query: 175 I-----WNSHHIVFLVDNVPLREFP--NTGAFSSVYPSKPMSVYVTIWD----------- 216
WN+ D P R + + G + +P P YV + D
Sbjct: 164 DAISGWWNTGAAT-EADGSPNRGYKVRHKGGY---FPVAPNDQYVDLRDKMLTNLINSGF 219
Query: 217 ----GSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSA 254
G GG+ +NY++ + + +M++ ++ N+A
Sbjct: 220 ILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTA 261
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 34/162 (20%)
Query: 123 HDEIDIELLGHDKRNDWVLQTNIYANGGVST----GREEKFYFW----FDPTAQHHYYSI 174
HD +E D RN N + G++ G E +FY + FD A +Y +
Sbjct: 95 HDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEV 154
Query: 175 I-----WNSHHIVFLVDNVPLREFP--NTGAFSSVYPSKPMSVYVTIWD----------- 216
WN+ D P R + + G + +P P YV + D
Sbjct: 155 DAISGWWNTGAAT-EADGSPNRGYKVRHKGGY---FPVAPNDQYVDLRDKMLTNLINSGF 210
Query: 217 ----GSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSA 254
G GG+ +NY++ + + +M++ ++ N+A
Sbjct: 211 ILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTA 252
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 63 RINNGSMATLALDKS------SGSGLVSRNK--YYHGFFSAAIKLPSGLSSGVVLAFYLS 114
R+ G + A +S + + LV+R K + +G F +LPSG + + + L
Sbjct: 50 RVGGGVLIIEARRESYEGREYTSARLVTRGKASWTYGRFEIRARLPSGRGTWPAI-WMLP 108
Query: 115 NADSYPHNH--DEIDIELLGHDKRNDWVLQTNIYANG-----GVSTGREEKFYFWFDPTA 167
+ +Y + D +I++ H N V+ ++ G G + PTA
Sbjct: 109 DRQTYGSAYWPDNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGTQRGGSIRV-----PTA 163
Query: 168 Q--HHYYSIIWNSHHIVFLVDNVPLREFPN 195
+ H Y+I W I + VD+ FPN
Sbjct: 164 RTDFHVYAIEWTPEEIRWFVDDSLYYRFPN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,784,815
Number of Sequences: 62578
Number of extensions: 412758
Number of successful extensions: 874
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 27
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)