Query 021307
Match_columns 314
No_of_seqs 311 out of 1600
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:13:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 9.8E-83 2.1E-87 596.4 34.5 269 38-314 17-287 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 5.8E-81 1.3E-85 580.2 33.4 260 45-313 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.4E-44 3E-49 325.8 25.8 175 58-248 16-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.7E-38 5.9E-43 285.8 25.5 175 54-246 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.9E-35 4.2E-40 259.6 20.7 177 50-244 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 1.5E-33 3.2E-38 252.0 24.4 176 54-246 25-210 (210)
7 cd08023 GH16_laminarinase_like 100.0 3.4E-32 7.3E-37 248.6 22.9 181 55-246 34-235 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 7.2E-32 1.6E-36 250.8 22.8 179 58-246 57-257 (258)
9 cd02177 GH16_kappa_carrageenas 100.0 1E-29 2.2E-34 238.0 22.8 175 58-246 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1E-28 2.2E-33 233.8 20.1 187 54-246 36-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 4.9E-28 1.1E-32 225.3 21.8 185 56-246 43-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 99.9 2.1E-25 4.6E-30 214.5 20.1 140 80-221 102-279 (330)
13 COG2273 SKN1 Beta-glucanase/Be 99.9 5.3E-25 1.2E-29 213.0 19.5 178 54-245 74-262 (355)
14 cd02179 GH16_beta_GRP beta-1,3 99.9 5.5E-25 1.2E-29 210.9 18.7 137 80-218 99-268 (321)
15 PF06955 XET_C: Xyloglucan end 99.8 1.3E-20 2.8E-25 134.1 3.7 44 269-313 7-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 4.4E-14 9.5E-19 141.2 15.6 189 66-264 166-466 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.4 3.9E-12 8.4E-17 120.1 13.4 146 67-221 48-251 (293)
18 PF13385 Laminin_G_3: Concanav 93.8 2.2 4.7E-05 34.5 12.6 65 166-248 84-149 (157)
19 PF06439 DUF1080: Domain of Un 89.1 3.9 8.4E-05 35.1 9.6 105 79-196 43-156 (185)
20 PF09264 Sial-lect-inser: Vibr 86.9 1.1 2.4E-05 40.2 4.7 106 70-194 9-121 (198)
21 smart00210 TSPN Thrombospondin 84.7 18 0.00039 31.8 11.5 29 166-194 116-144 (184)
22 smart00159 PTX Pentraxin / C-r 83.1 15 0.00032 33.0 10.4 77 165-251 88-166 (206)
23 KOG1834 Calsyntenin [Extracell 82.5 11 0.00024 40.0 10.3 52 166-221 441-492 (952)
24 smart00560 LamGL LamG-like jel 82.0 27 0.00059 28.7 15.0 69 165-250 59-130 (133)
25 cd00110 LamG Laminin G domain; 77.8 36 0.00078 27.6 17.4 85 89-192 20-105 (151)
26 PF10287 DUF2401: Putative TOS 77.7 10 0.00022 35.3 7.5 84 93-179 103-207 (235)
27 cd00152 PTX Pentraxins are pla 70.7 77 0.0017 28.1 17.4 77 165-251 88-166 (201)
28 PF14099 Polysacc_lyase: Polys 70.0 81 0.0017 28.1 11.9 73 161-245 146-224 (224)
29 PF02973 Sialidase: Sialidase, 67.2 97 0.0021 27.9 13.2 134 89-250 33-177 (190)
30 PF02210 Laminin_G_2: Laminin 54.0 1E+02 0.0022 23.9 9.3 75 166-247 53-127 (128)
31 PF09224 DUF1961: Domain of un 42.2 2.5E+02 0.0053 26.0 9.4 59 167-245 159-218 (218)
32 PF11191 DUF2782: Protein of u 42.0 1.3E+02 0.0029 24.0 7.1 18 97-118 63-80 (105)
33 PF15240 Pro-rich: Proline-ric 41.4 18 0.00038 32.4 1.9 17 7-24 3-19 (179)
34 PF07172 GRP: Glycine rich pro 39.5 21 0.00046 28.5 1.9 14 3-16 6-19 (95)
35 smart00282 LamG Laminin G doma 35.7 2.3E+02 0.0049 22.6 14.6 28 166-193 61-88 (135)
36 PF06832 BiPBP_C: Penicillin-B 35.4 50 0.0011 25.3 3.4 35 180-216 44-79 (89)
37 PF12248 Methyltransf_FA: Farn 34.3 2E+02 0.0043 22.8 6.9 47 165-217 50-98 (102)
38 PF13670 PepSY_2: Peptidase pr 30.6 1E+02 0.0022 23.3 4.4 22 63-84 61-82 (83)
39 cd06482 ACD_HspB10 Alpha cryst 24.1 2E+02 0.0043 22.4 5.0 47 56-102 19-65 (87)
40 cd06526 metazoan_ACD Alpha-cry 24.1 2.1E+02 0.0046 21.4 5.2 45 55-102 17-61 (83)
41 PF07691 PA14: PA14 domain; I 23.5 1.1E+02 0.0025 24.7 3.8 29 165-194 57-85 (145)
42 PHA02752 hypothetical protein; 22.3 5.8E+02 0.013 23.1 8.1 16 1-16 1-16 (242)
43 PF08329 ChitinaseA_N: Chitina 20.0 4.4E+02 0.0095 22.4 6.7 50 178-252 52-101 (133)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=9.8e-83 Score=596.44 Aligned_cols=269 Identities=36% Similarity=0.681 Sum_probs=244.9
Q ss_pred cccCccccccccCCCcccccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCC
Q 021307 38 RLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNAD 117 (314)
Q Consensus 38 a~~~~~~~~~f~~~~~~~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~ 117 (314)
++++++...+|+++|...|+.+|+++..+|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.+
T Consensus 17 ~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~ 96 (291)
T PLN03161 17 AFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG 96 (291)
T ss_pred hcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC
Confidence 45566677889999999999999999878889999999999999999999999999999999998889999999999853
Q ss_pred CCCCCCCeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCC
Q 021307 118 SYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTG 197 (314)
Q Consensus 118 ~~~~~~dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~ 197 (314)
+.+|||||||||+++++|+++|||+|.+|.+. ++++++++|||+++||+|+|+|+|++|+|||||++||++++.+
T Consensus 97 ---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~--re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~ 171 (291)
T PLN03161 97 ---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGS--REQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYE 171 (291)
T ss_pred ---CCCCeEEEEecCCCCCCceEEEeceEeCCcCC--cceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEccc
Confidence 57999999999999999999999999998764 8889999999999999999999999999999999999999877
Q ss_pred CcccCCCC-CceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCCCCCCCCCCCCCCCCCCCCCCcccc
Q 021307 198 AFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQF 276 (314)
Q Consensus 198 ~~g~~~P~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 276 (314)
..+.+||+ +||+|++|||+|++|||+||++||||+++||+|.|++|++.+|.+.++.. ...|...+. ..||+++.+
T Consensus 172 ~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~-~~~c~~~~~--~~~~~~~~~ 248 (291)
T PLN03161 172 NEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS-IKQCADPTP--SNWWTSPSY 248 (291)
T ss_pred ccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC-ccccCCCCc--cccccCccc
Confidence 66789998 89999999999999999999999999999999999999999998765321 236875421 249998899
Q ss_pred cCCCHHHHHHHHHHhcCCEEEecccCCCCCCC-CCCCCC
Q 021307 277 TTLSKQQVAALDWSRRKLMFYSYCKDTTRFKV-MPPECK 314 (314)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~p~ec~ 314 (314)
+.|++.|+++|+|||+||||||||+|++|||+ +||||.
T Consensus 249 ~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~ 287 (291)
T PLN03161 249 SQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECF 287 (291)
T ss_pred cCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccC
Confidence 99999999999999999999999999999997 899994
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=5.8e-81 Score=580.21 Aligned_cols=260 Identities=49% Similarity=0.923 Sum_probs=240.8
Q ss_pred cccccCCCcccccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCC
Q 021307 45 HVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHD 124 (314)
Q Consensus 45 ~~~f~~~~~~~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~d 124 (314)
..+|.++|...|+++||++.++|+.|+|+||+.+|++|+|+..|+||+||||||||+|+++|+||||||++.+ |+.++
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~~ 80 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHD 80 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCCC
Confidence 3579999999999999999877889999999999999999999999999999999998889999999999975 68899
Q ss_pred eeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCC
Q 021307 125 EIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYP 204 (314)
Q Consensus 125 EID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P 204 (314)
|||||+||+++++|+++|||+|.+|.+. ++++++++|||+++||+|+|+|+|++|+|||||++||++++.+..+..||
T Consensus 81 EID~E~lGn~~g~~~~~qtnv~~~g~g~--r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 158 (263)
T cd02176 81 EIDFEFLGNVTGQPYTLQTNVFANGVGG--REQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYP 158 (263)
T ss_pred eEEEEEecccCCCceEEEEEEeCCCCCC--CceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCC
Confidence 9999999999999999999999988764 88899999999999999999999999999999999999998877788999
Q ss_pred C-CceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCCCCCCCCCCCCCCCCCCCCCCcccccCCCHHH
Q 021307 205 S-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQ 283 (314)
Q Consensus 205 ~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~~~ 283 (314)
+ +||+|++|||+||+|||+||++++||+++||+|.|++|+|.+|.+.+.. ..|..... ..||+.+.+++|++.|
T Consensus 159 ~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~---~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (263)
T cd02176 159 SSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGD---SFSSCSCT--EDWWNGSTYQQLSANQ 233 (263)
T ss_pred ccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCC---ccccCCCc--cccccccccccCCHHH
Confidence 8 9999999999999999999999999999999999999999999986542 24654321 1399999999999999
Q ss_pred HHHHHHHhcCCEEEecccCCCCCCCCCCCC
Q 021307 284 VAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313 (314)
Q Consensus 284 ~~~~~~~~~~~~~y~yc~d~~r~~~~p~ec 313 (314)
+++|+|||+||||||||+|++|||++||||
T Consensus 234 ~~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 234 QRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 999999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.4e-44 Score=325.78 Aligned_cols=175 Identities=27% Similarity=0.474 Sum_probs=152.6
Q ss_pred CCCeEEeeCCCEEEEEEecC-CCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCCCCC
Q 021307 58 GSNVKRINNGSMATLALDKS-SGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKR 136 (314)
Q Consensus 58 ~~~v~~~~~g~~l~Ltld~~-~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEID~E~lG~~~g 136 (314)
.++|.+. +++|.|+|++. ++++|+|++.|+|||||||||+|.+ +|+||||||++. .++|||||++|+++
T Consensus 16 ~~~~~~~--~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~-----~~gEIDIE~~G~~~- 85 (203)
T cd02183 16 SGTVDYD--DDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD-----DLDEIDWEWVGGDL- 85 (203)
T ss_pred CCcEeEC--CCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC-----CCCEEEEEecCCCC-
Confidence 4567773 56799999998 6899999999999999999999998 999999999984 57999999999764
Q ss_pred CCeEEEeeEEeCCccc-CCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCC-cccCCCCCceEEEEEe
Q 021307 137 NDWVLQTNIYANGGVS-TGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGA-FSSVYPSKPMSVYVTI 214 (314)
Q Consensus 137 ~p~~vqTN~~~~G~~~-~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~-~g~~~P~~Pm~l~lnl 214 (314)
..+|+|+|.+|... ..+.+.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+..||++||+|++|+
T Consensus 86 --~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~ln~ 163 (203)
T cd02183 86 --TQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQIGI 163 (203)
T ss_pred --CEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEEEE
Confidence 48999999876542 2355667778888899999999999999999999999999987542 2577999999999999
Q ss_pred ecCCC---------CCcCCCCCccCCCCCcEEEEEEEEEEEee
Q 021307 215 WDGSQ---------WATHGGKYPVNYKYAPFVASLAEMEMAGC 248 (314)
Q Consensus 215 W~gg~---------Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c 248 (314)
|+||+ || || ++||+.+||+|.|++|+|+.+
T Consensus 164 W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 164 WAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred ecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEeC
Confidence 99985 99 88 699999999999999999764
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=2.7e-38 Score=285.77 Aligned_cols=175 Identities=28% Similarity=0.459 Sum_probs=148.8
Q ss_pred ccccCCCeEEeeCCCEEEEEEecCC-------CceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCee
Q 021307 54 TFFGGSNVKRINNGSMATLALDKSS-------GSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEI 126 (314)
Q Consensus 54 ~~w~~~~v~~~~~g~~l~Ltld~~~-------ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEI 126 (314)
..|.++||++. ++.|.|++.+.. +++|.|+.+|+||+||+|||++.+ +|+|+||||++.+...+.++||
T Consensus 27 ~~~~~~nv~v~--~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS--DGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE--CCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 46778999985 567999997654 578999999999999999999988 9999999999854333457999
Q ss_pred eEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCCCC
Q 021307 127 DIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSK 206 (314)
Q Consensus 127 D~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~ 206 (314)
|||++|++.. .+++|+|.++.+. ++..+.+.++++++||+|+|+|+|++|+|||||+++++++..+ ..+|.+
T Consensus 103 DiE~~g~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~~ 174 (212)
T cd02175 103 DIEFLGKDTT---KVQFNYYTNGVGG--HEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPDT 174 (212)
T ss_pred EEEEccCCCC---EeEEEEECCCCCC--CceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCCC
Confidence 9999998754 6889999876543 4555677889999999999999999999999999999998653 468999
Q ss_pred ceEEEEEeecCC---CCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 207 PMSVYVTIWDGS---QWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 207 Pm~l~lnlW~gg---~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
||+|++|+|.++ +|+ | ++|. .+|++|+|++|||+
T Consensus 175 p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 5 4666 89999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.9e-35 Score=259.58 Aligned_cols=177 Identities=32% Similarity=0.533 Sum_probs=150.1
Q ss_pred CCCcccccCCCeEEeeCCCEEEEEEec-----CCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCC
Q 021307 50 QGFSTFFGGSNVKRINNGSMATLALDK-----SSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHD 124 (314)
Q Consensus 50 ~~~~~~w~~~~v~~~~~g~~l~Ltld~-----~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~d 124 (314)
+.+...|.++||++. +|+.|.|++++ .++++|.|+..++||+||+|||++.+ .|+++||||.+.+. |+.++
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~ 78 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGG 78 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchh
Confidence 346688999999995 34699999998 35789999999999999999999887 99999999965334 78999
Q ss_pred eeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCC
Q 021307 125 EIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYP 204 (314)
Q Consensus 125 EID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P 204 (314)
|||||++|+++. .+++|+|..+.+......++.+..++.++||+|+|+|+|++|+|||||++++++......+..||
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999999865 59999998887642235567778899999999999999999999999999999997754434689
Q ss_pred C-CceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEE
Q 021307 205 S-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEME 244 (314)
Q Consensus 205 ~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~ 244 (314)
. .||+|.+++|.+++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 8 99999999999998884333 78999986
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-33 Score=251.98 Aligned_cols=176 Identities=31% Similarity=0.485 Sum_probs=146.0
Q ss_pred ccccCCCeEEeeCCCEEEEEEecCC------CceEEE-eeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCee
Q 021307 54 TFFGGSNVKRINNGSMATLALDKSS------GSGLVS-RNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEI 126 (314)
Q Consensus 54 ~~w~~~~v~~~~~g~~l~Ltld~~~------ga~i~S-k~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEI 126 (314)
..|.++||.+.. ++.|.|++.+.. +++|.| ++.|+||+||+|||++.+ .|+|+||||++.+..++..+||
T Consensus 25 ~~~~~~nv~~~~-~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 25 MTNSPNNVYVEN-DGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred EEECccCEEEeC-CCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 467788998853 268999998653 478999 999999999999999998 9999999999986545779999
Q ss_pred eEEEeCCCCCCCeEEEeeEEeCCccc---CCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCC
Q 021307 127 DIELLGHDKRNDWVLQTNIYANGGVS---TGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY 203 (314)
Q Consensus 127 D~E~lG~~~g~p~~vqTN~~~~G~~~---~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~ 203 (314)
|||++|+++. .+++++|..+.+. ......+.+.+++.++||+|+|+|+|+.|+|||||++|+++++ .+
T Consensus 102 DiE~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~------~~ 172 (210)
T cd00413 102 DIEFLGRDPT---TVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN------QV 172 (210)
T ss_pred EEEecccCCC---eEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC------CC
Confidence 9999998743 6888888765431 1234445566778999999999999999999999999999874 27
Q ss_pred CCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 204 PSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 204 P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
|.+||+|+||+|.+++|+ +. .+....|..|+|++|||.
T Consensus 173 p~~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 PDDPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCCCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEEC
Confidence 899999999999999987 32 355788999999999983
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.4e-32 Score=248.61 Aligned_cols=181 Identities=18% Similarity=0.334 Sum_probs=143.5
Q ss_pred cccCCCeEEeeCCCEEEEEEecCC----------CceEEE--eeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCC---
Q 021307 55 FFGGSNVKRINNGSMATLALDKSS----------GSGLVS--RNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSY--- 119 (314)
Q Consensus 55 ~w~~~~v~~~~~g~~l~Ltld~~~----------ga~i~S--k~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~--- 119 (314)
.+.++|+.+ +++.|.|+..+.+ +++|.| ++.|+|||||||||+|.+ .|++|||||++.+..
T Consensus 34 ~~~~~nv~v--~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~ 109 (235)
T cd08023 34 TYRPENAYV--EDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVG 109 (235)
T ss_pred eCCCCCeEE--ECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCC
Confidence 446678887 4678999886543 357999 788999999999999998 999999999997642
Q ss_pred CCCCCeee-EEEeCCCCCCCeEEEeeEEeCCcc--cCCcceEEeccC-CCCCCcEEEEEEEcCceEEEEEcCeEEEEEec
Q 021307 120 PHNHDEID-IELLGHDKRNDWVLQTNIYANGGV--STGREEKFYFWF-DPTAQHHYYSIIWNSHHIVFLVDNVPLREFPN 195 (314)
Q Consensus 120 ~~~~dEID-~E~lG~~~g~p~~vqTN~~~~G~~--~~~~~~~~~l~~-dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~ 195 (314)
|+..+||| +|++|+++. .+++++|..+.. .......+.... +..++||+|+|+|+|++|+|||||++|+++++
T Consensus 110 w~~~~EIDI~E~~g~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~ 186 (235)
T cd08023 110 WPASGEIDIMEYVGNEPN---TVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTN 186 (235)
T ss_pred CCCCCcceeEecCCCCCC---eEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcc
Confidence 67789999 599998743 688888876653 223344455554 78999999999999999999999999999987
Q ss_pred CCCcc-cCCC-CCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 196 TGAFS-SVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 196 ~~~~g-~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
..... ..+| .+||+|+|+++.+++|+ |. ...-...|..|.|++|||.
T Consensus 187 ~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 187 PNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 54311 1234 59999999999999998 42 2345678999999999984
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=7.2e-32 Score=250.83 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=134.5
Q ss_pred CCCeEEeeCCCEEEEEEecCC-----------CceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCee
Q 021307 58 GSNVKRINNGSMATLALDKSS-----------GSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEI 126 (314)
Q Consensus 58 ~~~v~~~~~g~~l~Ltld~~~-----------ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEI 126 (314)
++||++ +++.|.|+..+.. +++|.|+..++|||||+|||+|.+ . ++|||||++.+ ++.++||
T Consensus 57 ~~nv~v--~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEI 129 (258)
T cd02178 57 ADNVSV--EDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEI 129 (258)
T ss_pred cCCeEE--ECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcE
Confidence 466777 4678999987653 368999999999999999999986 4 57999999975 4679999
Q ss_pred e-EEEeCCCCC--CCeEEEeeEEeCCcc---cCCc---ceEEeccCCCCCCcEEEEEEEc-CceEEEEEcCeEEEEEecC
Q 021307 127 D-IELLGHDKR--NDWVLQTNIYANGGV---STGR---EEKFYFWFDPTAQHHYYSIIWN-SHHIVFLVDNVPLREFPNT 196 (314)
Q Consensus 127 D-~E~lG~~~g--~p~~vqTN~~~~G~~---~~~~---~~~~~l~~dp~~dFHtY~i~Wt-pd~I~fyVDG~~vrt~~~~ 196 (314)
| ||++|++.+ .+..+++++|.-+.+ ...+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.
T Consensus 130 DI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~ 209 (258)
T cd02178 130 DILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENS 209 (258)
T ss_pred EhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCc
Confidence 9 699998732 234688887642221 1111 2234455677899999999999 9999999999999999875
Q ss_pred CCcccCCC-CCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 197 GAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 197 ~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
+. ....| .+||+|+||++.|| |+...+. ...-...|..|+||+|||.
T Consensus 210 ~~-~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 210 EI-TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cc-CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 43 23345 49999999999988 9821121 1223456999999999985
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=1e-29 Score=237.96 Aligned_cols=175 Identities=23% Similarity=0.229 Sum_probs=130.4
Q ss_pred CCCeEEeeCCCEEEEEEecC-------------------CCceEEEeeeeEeEEEEEEEEecC-CCCCceEEEEEeeeCC
Q 021307 58 GSNVKRINNGSMATLALDKS-------------------SGSGLVSRNKYYHGFFSAAIKLPS-GLSSGVVLAFYLSNAD 117 (314)
Q Consensus 58 ~~~v~~~~~g~~l~Ltld~~-------------------~ga~i~Sk~~~~YG~fe~r~Kl~~-g~s~G~v~AF~l~s~~ 117 (314)
++|+.+ ++|.|.|+..+. +++.|.|+..|+|||||+|||+++ + +|+||||||++..
T Consensus 43 ~~Nv~v--~dG~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI--SNGILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE--eCCEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467777 567899998764 236788999999999999999865 6 9999999999853
Q ss_pred C------CCCCCCeee-EEEeCCCC---CCCe----EEEeeEEeCCcccC--------CcceEEeccCCCCCCcEEEEEE
Q 021307 118 S------YPHNHDEID-IELLGHDK---RNDW----VLQTNIYANGGVST--------GREEKFYFWFDPTAQHHYYSII 175 (314)
Q Consensus 118 ~------~~~~~dEID-~E~lG~~~---g~p~----~vqTN~~~~G~~~~--------~~~~~~~l~~dp~~dFHtY~i~ 175 (314)
. .|+.++||| ||.+|.+. ++++ .+|++++.+|.+.. .....+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 1 378899999 57776541 2233 45555544443320 1122456778999999999999
Q ss_pred EcCceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecC---------CCCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 176 WNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDG---------SQWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 176 Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~g---------g~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
|+|++|+|||||++++++.+ .+...||.+.+++-.. -.|+ |+ ..+.+..|-.|+||+|||.
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 99999999999999999874 3556888888876332 2466 44 4556789999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=1e-28 Score=233.80 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred ccccCCCeEEeeCCCEEEEEEecC-------CCceEEE--eeeeEeEEEEEEEEecCC-CCCceEEEEEeeeCCC-----
Q 021307 54 TFFGGSNVKRINNGSMATLALDKS-------SGSGLVS--RNKYYHGFFSAAIKLPSG-LSSGVVLAFYLSNADS----- 118 (314)
Q Consensus 54 ~~w~~~~v~~~~~g~~l~Ltld~~-------~ga~i~S--k~~~~YG~fe~r~Kl~~g-~s~G~v~AF~l~s~~~----- 118 (314)
..+.++|+.+ .++.|.|+..+. +.++|.| |+.|+|||||||||||.+ ...|+||||||+++..
T Consensus 36 q~Y~~~nv~v--~~G~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT--INGSLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe--cCCeEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 3455678877 467899988754 2467888 677899999999999973 2389999999998531
Q ss_pred -----CCCC------CCeee-EEEeCCCCC-CCeE---EE----------------eeEEeC----Cccc-CCcceE-E-
Q 021307 119 -----YPHN------HDEID-IELLGHDKR-NDWV---LQ----------------TNIYAN----GGVS-TGREEK-F- 159 (314)
Q Consensus 119 -----~~~~------~dEID-~E~lG~~~g-~p~~---vq----------------TN~~~~----G~~~-~~~~~~-~- 159 (314)
.||. .+||| ||.+|.+.. .... +| ..+|.. -+.. .+..++ .
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 3674 49999 899986531 1111 11 111210 0000 000010 0
Q ss_pred ---eccC----CCCCCcEEEEEEEcC-----ceEEEEEcCeEEEEEecCCCc------ccCCCCCceEEEEEeecCCCCC
Q 021307 160 ---YFWF----DPTAQHHYYSIIWNS-----HHIVFLVDNVPLREFPNTGAF------SSVYPSKPMSVYVTIWDGSQWA 221 (314)
Q Consensus 160 ---~l~~----dp~~dFHtY~i~Wtp-----d~I~fyVDG~~vrt~~~~~~~------g~~~P~~Pm~l~lnlW~gg~Wa 221 (314)
.+.. ...++||+|+|+|+| ++|+|||||+++++++..+.. ...+|.+||+|+||+..||+|+
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQ 273 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEeccccC
Confidence 1111 136899999999999 899999999999999864211 1246789999999999999997
Q ss_pred cCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 222 THGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 222 t~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
|. +.+-...|..|+||+|||+
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 3456678999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=4.9e-28 Score=225.27 Aligned_cols=185 Identities=12% Similarity=0.057 Sum_probs=127.1
Q ss_pred ccCCCeEEeeCCCEEEEEEecCC-----CceEEEeeee--Ee----EEEEEEEEecCCC---CCceEEEEEeeeCCC---
Q 021307 56 FGGSNVKRINNGSMATLALDKSS-----GSGLVSRNKY--YH----GFFSAAIKLPSGL---SSGVVLAFYLSNADS--- 118 (314)
Q Consensus 56 w~~~~v~~~~~g~~l~Ltld~~~-----ga~i~Sk~~~--~Y----G~fe~r~Kl~~g~---s~G~v~AF~l~s~~~--- 118 (314)
++++|+.+. .++.|.|+..+.. .++|.|+.++ .| |+||||||+|.+. ..|+||||||++.+.
T Consensus 43 ~~~~n~~v~-~dG~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~ 121 (259)
T cd02182 43 NSTANVQLS-GNGTLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGN 121 (259)
T ss_pred CCCcCEEEc-CCCeEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCC
Confidence 456788874 2567888876552 3678887765 33 4999999999741 379999999999742
Q ss_pred --CCCCCCeee-EEEeCCCCCCCeEEEeeEEeCCcccCCcceE-Ee-ccCCCCCCcEEEEEEEcC-----ceEEEEEcCe
Q 021307 119 --YPHNHDEID-IELLGHDKRNDWVLQTNIYANGGVSTGREEK-FY-FWFDPTAQHHYYSIIWNS-----HHIVFLVDNV 188 (314)
Q Consensus 119 --~~~~~dEID-~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~-~~-l~~dp~~dFHtY~i~Wtp-----d~I~fyVDG~ 188 (314)
.||..+||| ||..|... ...+|.++....+...++.. .. ......++||+|+|+|++ ++|+|||||+
T Consensus 122 ~~~WP~~GEIDImE~~~~~~---~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~ 198 (259)
T cd02182 122 GTNWPACGELDIMENVNGLS---TGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGV 198 (259)
T ss_pred CCCCCccceeeeeeccCCCC---ceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCE
Confidence 478889999 79998753 34444333321111001111 00 011245899999999997 9999999999
Q ss_pred EEEEEecCCCc-cc---CCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEE
Q 021307 189 PLREFPNTGAF-SS---VYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMA 246 (314)
Q Consensus 189 ~vrt~~~~~~~-g~---~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~ 246 (314)
++++++..... .. ..|.+||+|+||++.||+|+ |..-...-...|..|+||+|||.
T Consensus 199 ~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 199 VYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 99999864211 11 24569999999999999998 32101113457999999999986
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=2.1e-25 Score=214.53 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=103.1
Q ss_pred ceEEE--eeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCC---CCCCCCeee-EEEeCCCCCCC-------eEEEeeEE
Q 021307 80 SGLVS--RNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADS---YPHNHDEID-IELLGHDKRND-------WVLQTNIY 146 (314)
Q Consensus 80 a~i~S--k~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~---~~~~~dEID-~E~lG~~~g~p-------~~vqTN~~ 146 (314)
++|.| |+.|+|||||||||+|.| .|+||||||++.+. .||..+||| ||..|+.+..+ ..++..+|
T Consensus 102 gri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH 179 (330)
T cd08024 102 ARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLH 179 (330)
T ss_pred EEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEE
Confidence 56788 567899999999999999 99999999999753 478899999 79999864321 13455555
Q ss_pred eCCc-ccC-Ccc--eEE-eccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCC-------------------CcccC
Q 021307 147 ANGG-VST-GRE--EKF-YFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTG-------------------AFSSV 202 (314)
Q Consensus 147 ~~G~-~~~-~~~--~~~-~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~-------------------~~g~~ 202 (314)
.... ... .+. ... ....+.+++||+|+|+|+|++|+|||||+++++++... ..+..
T Consensus 180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~ 259 (330)
T cd08024 180 WGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKM 259 (330)
T ss_pred eCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcC
Confidence 3211 110 011 111 12245678999999999999999999999999998521 01234
Q ss_pred CCC-CceEEEEEeecCCCCC
Q 021307 203 YPS-KPMSVYVTIWDGSQWA 221 (314)
Q Consensus 203 ~P~-~Pm~l~lnlW~gg~Wa 221 (314)
.|+ +|++|+||+.+||.|.
T Consensus 260 aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 260 APFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCEEEEEEEEecCCCC
Confidence 687 9999999999999884
No 13
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.3e-25 Score=213.01 Aligned_cols=178 Identities=27% Similarity=0.353 Sum_probs=137.4
Q ss_pred ccccCCCeEEeeCCCEEEEEEecC-------CCceEEEeee--eEeEEEEEEEEecCCCCCceEEEEEeeeCCC-CCCCC
Q 021307 54 TFFGGSNVKRINNGSMATLALDKS-------SGSGLVSRNK--YYHGFFSAAIKLPSGLSSGVVLAFYLSNADS-YPHNH 123 (314)
Q Consensus 54 ~~w~~~~v~~~~~g~~l~Ltld~~-------~ga~i~Sk~~--~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~-~~~~~ 123 (314)
..|..+++.+. .++.++|.+++. .+++++|..+ |+||++|+|||++.+ .|+|+||||++++. ++..+
T Consensus 74 ~~w~~~~~~lt-~~~~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLT-IGGTLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEe-eCCeeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 46777777665 466888888764 3478999887 899999999999987 99999999999743 33557
Q ss_pred CeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccC-CCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccC
Q 021307 124 DEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWF-DPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSV 202 (314)
Q Consensus 124 dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~-dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~ 202 (314)
+|||+|+||++.. +..+|+|++.++.+. .+....+.+ +..++||+|+++|.+++|+|||||++++++... ..
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~--~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGG--TSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCC--ceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 9999999997754 346999999988765 334344455 788999999999999999999999999999854 45
Q ss_pred CCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEE
Q 021307 203 YPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEM 245 (314)
Q Consensus 203 ~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v 245 (314)
+|+.||++++++|.++.+.+.-| .......|. .++++++
T Consensus 224 ~~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 262 (355)
T COG2273 224 IPQIPFYVLVNLWMGGYAGGPPG--EALSAGSPL--NIDYYRV 262 (355)
T ss_pred CcCCcceeEEeecccCccCCCcc--ccccCCcce--Eeeeeee
Confidence 69999999999999987653323 233333344 4555554
No 14
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.93 E-value=5.5e-25 Score=210.88 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred ceEEEe--eeeEeEEEEEEEEecCCCCCceEEEEEeeeCCC---CC-CCCCeee-EEEeCCCCCC---CeEEEeeEEeCC
Q 021307 80 SGLVSR--NKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADS---YP-HNHDEID-IELLGHDKRN---DWVLQTNIYANG 149 (314)
Q Consensus 80 a~i~Sk--~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~---~~-~~~dEID-~E~lG~~~g~---p~~vqTN~~~~G 149 (314)
|+|.|+ +.|+|||||||||||.| .|+||||||++.+. .| +..+||| ||..|+.... ..++.+.+|...
T Consensus 99 ari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~ 176 (321)
T cd02179 99 ARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGP 176 (321)
T ss_pred eeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEccc
Confidence 678885 66899999999999999 99999999999753 23 6789999 7999986311 011122222211
Q ss_pred cc-c-C-Ccce---EEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCC----------------cccCCCC-C
Q 021307 150 GV-S-T-GREE---KFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGA----------------FSSVYPS-K 206 (314)
Q Consensus 150 ~~-~-~-~~~~---~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~----------------~g~~~P~-~ 206 (314)
.. . . .+.. ......+.+++||+|+|+|+|++|+|||||+++++++.... .....|+ +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~ 256 (321)
T cd02179 177 VLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDK 256 (321)
T ss_pred ccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCC
Confidence 10 0 0 0100 01112356789999999999999999999999999986321 1123576 9
Q ss_pred ceEEEEEeecCC
Q 021307 207 PMSVYVTIWDGS 218 (314)
Q Consensus 207 Pm~l~lnlW~gg 218 (314)
|++|+||+++||
T Consensus 257 ~FyliLNlAVGG 268 (321)
T cd02179 257 EFYLSLGVGVGG 268 (321)
T ss_pred CeEEEEEEEecC
Confidence 999999999987
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.81 E-value=1.3e-20 Score=134.15 Aligned_cols=44 Identities=41% Similarity=0.758 Sum_probs=37.6
Q ss_pred CCCCcccccCCCHHHHHHHHHHhcCCEEEecccCCCCCCCC-CCCC
Q 021307 269 DPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVM-PPEC 313 (314)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-p~ec 313 (314)
.||+++.++ |++.|+++|+|||+||||||||+|++|||.. |+||
T Consensus 7 ~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 7 SWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp SGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred ccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 499998888 9999999999999999999999999999964 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.57 E-value=4.4e-14 Score=141.17 Aligned_cols=189 Identities=19% Similarity=0.255 Sum_probs=122.1
Q ss_pred CCCEEEEEEecCC-------CceEEEeee--eEeEEEEEEEEecCC-CCCceEEEEEeeeCCC---C-------C-----
Q 021307 66 NGSMATLALDKSS-------GSGLVSRNK--YYHGFFSAAIKLPSG-LSSGVVLAFYLSNADS---Y-------P----- 120 (314)
Q Consensus 66 ~g~~l~Ltld~~~-------ga~i~Sk~~--~~YG~fe~r~Kl~~g-~s~G~v~AF~l~s~~~---~-------~----- 120 (314)
.+|.|.|++++.. ++.++|-++ |.-|++|++++||.. +..|+|||||++.+-. + |
T Consensus 166 ~~G~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g~WPySYd 245 (504)
T PF03935_consen 166 ENGSLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDGMWPYSYD 245 (504)
T ss_pred eCCEEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCceeccccc
Confidence 5789999998642 345777444 588999999999864 2479999999996520 0 1
Q ss_pred ----------------------------------------CCCCeee-EEEeCCCCC-CCe---EEEeeEE---e-----
Q 021307 121 ----------------------------------------HNHDEID-IELLGHDKR-NDW---VLQTNIY---A----- 147 (314)
Q Consensus 121 ----------------------------------------~~~dEID-~E~lG~~~g-~p~---~vqTN~~---~----- 147 (314)
....||| ||-...... .+. .+|..=| .
T Consensus 246 ~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~~y~~~~~ 325 (504)
T PF03935_consen 246 SCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDIWYRPDYD 325 (504)
T ss_pred ccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccccCCCCCCC
Confidence 0124999 797644321 011 1221100 0
Q ss_pred -----CCccc---CC---cceE-E----ec---cC--CCCCCcEEEEEEEcCc-----eEEEEEcCeEEEEEecCCCc--
Q 021307 148 -----NGGVS---TG---REEK-F----YF---WF--DPTAQHHYYSIIWNSH-----HIVFLVDNVPLREFPNTGAF-- 199 (314)
Q Consensus 148 -----~G~~~---~~---~~~~-~----~l---~~--dp~~dFHtY~i~Wtpd-----~I~fyVDG~~vrt~~~~~~~-- 199 (314)
+...+ .+ .-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++.++....-.
T Consensus 326 ~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~ 405 (504)
T PF03935_consen 326 FYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPN 405 (504)
T ss_pred ceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCC
Confidence 00000 00 1111 1 11 12 1237899999999874 89999999999999754221
Q ss_pred ----ccCCCCCceEEEEEeecCCCCCcCCCCCccCCC--CCcEEEEEEEEEEEeeecCCCCCCCCCCCCCC
Q 021307 200 ----SSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYK--YAPFVASLAEMEMAGCVLSNSASAPASCSKGS 264 (314)
Q Consensus 200 ----g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s--~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~ 264 (314)
...+|..||+|++|+-...+|+ .+||. ..|.+|.||+|||+.-....+ -.|.+..
T Consensus 406 ~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~~~----vgCDP~~ 466 (504)
T PF03935_consen 406 PNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDAIN----VGCDPPD 466 (504)
T ss_pred CCcCccccCcCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCCCe----eeeCCCC
Confidence 2358999999999999999996 57775 589999999999976432211 3587654
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.40 E-value=3.9e-12 Score=120.12 Aligned_cols=146 Identities=23% Similarity=0.380 Sum_probs=97.2
Q ss_pred CCEEEEEEecCC---------CceEEEeeeeEeEEEEEEE-EecCCCCCceEEEEEeeeCCCCCCCCCeee-EEEeCCCC
Q 021307 67 GSMATLALDKSS---------GSGLVSRNKYYHGFFSAAI-KLPSGLSSGVVLAFYLSNADSYPHNHDEID-IELLGHDK 135 (314)
Q Consensus 67 g~~l~Ltld~~~---------ga~i~Sk~~~~YG~fe~r~-Kl~~g~s~G~v~AF~l~s~~~~~~~~dEID-~E~lG~~~ 135 (314)
++.|.|.+|+.. .++|.||..|.+|+||+|+ |+|.| .|+||||||++. .||..+||| ||.++...
T Consensus 48 ~g~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~--~WP~~GEIDImE~vn~~~ 123 (293)
T cd02181 48 SGNVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGP--NWPNGGEIDIIEGVNLQT 123 (293)
T ss_pred CCeEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCC--CCCCCCcEEEEeccCCCC
Confidence 467888888642 2579999999999999997 99998 999999999986 589999999 79998643
Q ss_pred CCCeEEEeeEEeCCccc-------CCc----------------------ceEEeccCCCCCCcEEEEEEEcCceEEEEE-
Q 021307 136 RNDWVLQTNIYANGGVS-------TGR----------------------EEKFYFWFDPTAQHHYYSIIWNSHHIVFLV- 185 (314)
Q Consensus 136 g~p~~vqTN~~~~G~~~-------~~~----------------------~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyV- 185 (314)
. .+..+|+.+.-. ++. ...+-..|+ ...=-+|+++|+.+.|+.+.
T Consensus 124 ~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff 198 (293)
T cd02181 124 S----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFF 198 (293)
T ss_pred c----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEe
Confidence 3 233333321100 000 001112233 34557899999999998665
Q ss_pred --cCeEEEEEecCC---Ccc---cCCCC---------CceEEEEEeecCCCCC
Q 021307 186 --DNVPLREFPNTG---AFS---SVYPS---------KPMSVYVTIWDGSQWA 221 (314)
Q Consensus 186 --DG~~vrt~~~~~---~~g---~~~P~---------~Pm~l~lnlW~gg~Wa 221 (314)
+.+|--....+. .-| ..||. ++++|++++=--|+||
T Consensus 199 ~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 199 PRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred cCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 222222111111 112 34664 8999999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.77 E-value=2.2 Score=34.51 Aligned_cols=65 Identities=9% Similarity=0.242 Sum_probs=40.7
Q ss_pred CCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCC-CCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEE
Q 021307 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEME 244 (314)
Q Consensus 166 ~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~ 244 (314)
...||..++.|....+.+||||+.+.+..... ..+ .....+.+ |+. .....+|...++.|+
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~----~~~~~~~~~~~i-----------G~~---~~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPS----NISLNSNGPLFI-----------GGS---GGGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEES----SSSTTSCCEEEE-----------SS----STT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccC----CcCCCCcceEEE-----------eec---CCCCCceEEEEEEEE
Confidence 58899999999999999999999987654321 111 11222222 221 123678999999999
Q ss_pred EEee
Q 021307 245 MAGC 248 (314)
Q Consensus 245 v~~c 248 (314)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 9654
No 19
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=89.08 E-value=3.9 Score=35.14 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred CceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeC--CC--CCCCCCeeeEEEeCCCCCCCeEEEeeEEeCCcccCC
Q 021307 79 GSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNA--DS--YPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTG 154 (314)
Q Consensus 79 ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~--~~--~~~~~dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~ 154 (314)
++-|.++..|.=..+++.+|+.++ | -+++++-.. .. .+...-|+.+.--+.... .....+...
T Consensus 43 ~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~---------~~~~~G~~~ 109 (185)
T PF06439_consen 43 GGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTG---------LPNSTGSLY 109 (185)
T ss_dssp S--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCST---------TTTSTTSBT
T ss_pred cceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccC---------CCCccceEE
Confidence 456888887777788999998543 2 445555543 10 112233544432221100 000111101
Q ss_pred cc----eEE-eccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecC
Q 021307 155 RE----EKF-YFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNT 196 (314)
Q Consensus 155 ~~----~~~-~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~ 196 (314)
.+ ... .....+..+||++.|.-..++|+.+|||++|-+++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 000 1112356899999999999999999999999998864
No 20
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=86.87 E-value=1.1 Score=40.18 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=53.9
Q ss_pred EEEEEecCCCceEEEeeee---EeE-EEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCCCCCCCeEEEeeE
Q 021307 70 ATLALDKSSGSGLVSRNKY---YHG-FFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNI 145 (314)
Q Consensus 70 l~Ltld~~~ga~i~Sk~~~---~YG-~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEID~E~lG~~~g~p~~vqTN~ 145 (314)
..+.+.-.+|+++-|+..- .+| +....||+..| |..+-.|--. ...--++|-+-.+ | .+-.++
T Consensus 9 ~~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG-----~~r~l~~lsvn~s--G---~LvA~L 75 (198)
T PF09264_consen 9 ISWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANG-----SKRYLPILSVNES--G---SLVAEL 75 (198)
T ss_dssp --EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEES-----SEEEEEEEEE-TT--S----EEEEE
T ss_pred heEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCC-----ceEEEEEEEEcCC--C---CEEEEE
Confidence 3455555777888776532 566 67888888765 3333333211 1111222221111 1 111122
Q ss_pred EeCCcccCCcceEEecc-CCCCCCcEEEEEEEcC--ceEEEEEcCeEEEEEe
Q 021307 146 YANGGVSTGREEKFYFW-FDPTAQHHYYSIIWNS--HHIVFLVDNVPLREFP 194 (314)
Q Consensus 146 ~~~G~~~~~~~~~~~l~-~dp~~dFHtY~i~Wtp--d~I~fyVDG~~vrt~~ 194 (314)
.+.+. ...+.+. +| -.+||.|.|.-.| ..-.|||||++|++..
T Consensus 76 ~g~ss-----~~~~~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 76 EGQSS-----NTLLATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp TTS-S------EEEE-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred ecCCC-----cEEEeccccc-ccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 11111 1112222 22 2589999999987 8999999999999853
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=84.66 E-value=18 Score=31.76 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=26.5
Q ss_pred CCCcEEEEEEEcCceEEEEEcCeEEEEEe
Q 021307 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFP 194 (314)
Q Consensus 166 ~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~ 194 (314)
...||.-++.+..+++++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 56899999999999999999999998764
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=83.13 E-value=15 Score=32.98 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCCCcEEEEEEEc--CceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEE
Q 021307 165 PTAQHHYYSIIWN--SHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAE 242 (314)
Q Consensus 165 p~~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~ 242 (314)
....||...+.|+ ..++.+||||+++.. . .-..+..++ .+-.+.++- .-+.+ || ..+. .-.|.-.++.
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~-~~G~lvlGq-~qd~~---gg--~f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK-PGGSIILGQ-EQDSY---GG--GFDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC-CCCEEEEEe-cccCC---CC--CCCC-CcceeEEEee
Confidence 3578999999997 457999999998721 1 111123333 233344444 22333 44 2333 3458999999
Q ss_pred EEEEeeecC
Q 021307 243 MEMAGCVLS 251 (314)
Q Consensus 243 v~v~~c~~~ 251 (314)
|+|-+..-+
T Consensus 158 v~iw~~~Ls 166 (206)
T smart00159 158 LNMWDSVLS 166 (206)
T ss_pred eEEecccCC
Confidence 998766543
No 23
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=82.54 E-value=11 Score=39.97 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCC
Q 021307 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWA 221 (314)
Q Consensus 166 ~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wa 221 (314)
.++||-|.+.-.--.+..||||+...-..-. .+||-.|.++-.-|=+|-=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 5899999999976669999999865432222 468877777666666666776
No 24
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=81.99 E-value=27 Score=28.72 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=44.8
Q ss_pred CCCCcEEEEEEEcC--ceEEEEEcCeEEEEEecCCCcccCCC-CCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEE
Q 021307 165 PTAQHHYYSIIWNS--HHIVFLVDNVPLREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLA 241 (314)
Q Consensus 165 p~~dFHtY~i~Wtp--d~I~fyVDG~~vrt~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~ 241 (314)
+...||-.++.++. .+|+.||||+++.+.... ..+ ..|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 799999999998754321 112 234333211111 11 12357999999
Q ss_pred EEEEEeeec
Q 021307 242 EMEMAGCVL 250 (314)
Q Consensus 242 ~v~v~~c~~ 250 (314)
.|+|.++..
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999988753
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=77.81 E-value=36 Score=27.63 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=47.7
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccC-CCCC
Q 021307 89 YHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWF-DPTA 167 (314)
Q Consensus 89 ~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~-dp~~ 167 (314)
....+++++|.... .|++ |++.+. ...+-|-+|...+ .+...+- .|. ....+.... -...
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~----~~~~~~~l~l~~g------~l~~~~~-~g~----~~~~~~~~~~v~dg 80 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ----NGGDFLALELEDG------RLVLRYD-LGS----GSLVLSSKTPLNDG 80 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC----CCCCEEEEEEECC------EEEEEEc-CCc----ccEEEEccCccCCC
Confidence 44567777787654 5654 222221 1345556666532 2332222 121 122222221 2246
Q ss_pred CcEEEEEEEcCceEEEEEcCeEEEE
Q 021307 168 QHHYYSIIWNSHHIVFLVDNVPLRE 192 (314)
Q Consensus 168 dFHtY~i~Wtpd~I~fyVDG~~vrt 192 (314)
.||...|.+....++.+|||..+.+
T Consensus 81 ~Wh~v~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 81 QWHSVSVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred CEEEEEEEECCCEEEEEECCccEEe
Confidence 7999999999999999999985433
No 26
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=77.66 E-value=10 Score=35.27 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=49.2
Q ss_pred EEEEEEecCCC-----CCceEEEEEeeeCCC-----C-------C-CCCCeee-EEEeCCCCCCCeEEEeeEEe-CCccc
Q 021307 93 FSAAIKLPSGL-----SSGVVLAFYLSNADS-----Y-------P-HNHDEID-IELLGHDKRNDWVLQTNIYA-NGGVS 152 (314)
Q Consensus 93 fe~r~Kl~~g~-----s~G~v~AF~l~s~~~-----~-------~-~~~dEID-~E~lG~~~g~p~~vqTN~~~-~G~~~ 152 (314)
|-++.++|... ...=.||+||+.... + | ..++|.| ||.|..... .+-+.+|. +|...
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~~---k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGDD---KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCCc---eeEEEEecccCccc
Confidence 55666677621 245689999998631 2 3 3689999 799976543 46666665 44311
Q ss_pred CCcceEEeccC-CCCCCcEEEEEEEcCc
Q 021307 153 TGREEKFYFWF-DPTAQHHYYSIIWNSH 179 (314)
Q Consensus 153 ~~~~~~~~l~~-dp~~dFHtY~i~Wtpd 179 (314)
......-.-.| .|++..-++++.++.+
T Consensus 180 ~~~g~G~~~yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSDYFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCCcccCCCCCCeEEEEEEcCC
Confidence 00000001112 3677888888888653
No 27
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=70.69 E-value=77 Score=28.11 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCCCcEEEEEEEc--CceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEE
Q 021307 165 PTAQHHYYSIIWN--SHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAE 242 (314)
Q Consensus 165 p~~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~ 242 (314)
....||...+.|+ ..++.+||||+++.+-. -..+..++. ...+.|+-- -+.+ || ..+. .-.|.-.++.
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~-~g~l~lG~~-q~~~---gg--~~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP-GGSIILGQE-QDSY---GG--GFDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC-CCeEEEeec-ccCC---CC--CCCC-CcceEEEEce
Confidence 4678999999997 45799999999885432 111223332 223444321 0112 44 2332 3468899999
Q ss_pred EEEEeeecC
Q 021307 243 MEMAGCVLS 251 (314)
Q Consensus 243 v~v~~c~~~ 251 (314)
|+|-+..-+
T Consensus 158 v~iw~~~Ls 166 (201)
T cd00152 158 VNMWDSVLS 166 (201)
T ss_pred eEEEcccCC
Confidence 988665433
No 28
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=69.99 E-value=81 Score=28.08 Aligned_cols=73 Identities=8% Similarity=0.207 Sum_probs=46.2
Q ss_pred ccCCCCCCcEEEEE--EEcC---ceEEEEEcCeEEEEEecCCCcccCCCC-CceEEEEEeecCCCCCcCCCCCccCCCCC
Q 021307 161 FWFDPTAQHHYYSI--IWNS---HHIVFLVDNVPLREFPNTGAFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYA 234 (314)
Q Consensus 161 l~~dp~~dFHtY~i--~Wtp---d~I~fyVDG~~vrt~~~~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~ 234 (314)
+...+...||.+.| .|.+ ..|..++||++|..++.. ..++. +..++.++|.-.+ |....+ .. ..-
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~----~~~~~~~~~y~K~GiYr~~-~~~~~~--~~--~~~ 216 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP----TGYNDDRGPYFKFGIYRSG-WKNDPN--ES--DTQ 216 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE----ECECCSSEEEEEEEEEEHC-CHHHSC------SS-
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC----ceeCCCCcceeEEEEECCC-CcCCCc--cc--ccE
Confidence 33344588999776 5875 779999999999988752 34554 7889999997643 221111 11 111
Q ss_pred cEEEEEEEEEE
Q 021307 235 PFVASLAEMEM 245 (314)
Q Consensus 235 Pf~a~~~~v~v 245 (314)
.+|++|++
T Consensus 217 ---vy~D~v~~ 224 (224)
T PF14099_consen 217 ---VYYDNVRI 224 (224)
T ss_dssp ---EEEEEEE-
T ss_pred ---EEeccccC
Confidence 88998875
No 29
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=67.16 E-value=97 Score=27.94 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=67.4
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEeeeCCCCC--------CCCCeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEe
Q 021307 89 YHGFFSAAIKLPSGLSSGVVLAFYLSNADSYP--------HNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFY 160 (314)
Q Consensus 89 ~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~--------~~~dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~ 160 (314)
.-|.+-+|.|.... + -+-|++-.|++... .+ ++|=+|+-+.+....|...+..-..+. +
T Consensus 33 ~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~-~~~G~E~R~~~~~~~y~~~~~~~v~~~-------~-- 99 (190)
T PF02973_consen 33 EEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSN-NKLGFELRDTKGNQNYNFSRPAKVRGG-------Y-- 99 (190)
T ss_dssp SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEET-TEEEEEEEETTTTCEEEEEESSE--SE-------E--
T ss_pred cccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEEC-CEEEEEEecCCCCcccccccccEeccc-------c--
Confidence 45566677776443 3 33445555543210 11 277788888775433333222111110 0
Q ss_pred ccCCCCCCcEEEEEEEc--CceEEEEEcCeEEEEEecCCCc-ccCCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEE
Q 021307 161 FWFDPTAQHHYYSIIWN--SHHIVFLVDNVPLREFPNTGAF-SSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFV 237 (314)
Q Consensus 161 l~~dp~~dFHtY~i~Wt--pd~I~fyVDG~~vrt~~~~~~~-g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~ 237 (314)
+ ....||+=++.=. ..+.++||||..+-++...... -...| .+=.+.++-- .++| -..-||.
T Consensus 100 -~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~-~~n~~~iG~t------~R~g-----~~~y~f~ 164 (190)
T PF02973_consen 100 -K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIP-GLNSVQIGGT------NRAG-----SNAYPFN 164 (190)
T ss_dssp -T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGST-T--EEEESSE------EETT-----EEES--E
T ss_pred -c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCc-CCceEEEcce------EeCC-----Cceeccc
Confidence 1 1346888777775 6789999999888887644311 11223 2223333211 1222 2367999
Q ss_pred EEEEEEEEEeeec
Q 021307 238 ASLAEMEMAGCVL 250 (314)
Q Consensus 238 a~~~~v~v~~c~~ 250 (314)
-.+++++|+++..
T Consensus 165 G~I~~l~iYn~aL 177 (190)
T PF02973_consen 165 GTIDNLKIYNRAL 177 (190)
T ss_dssp EEEEEEEEESS--
T ss_pred ceEEEEEEEcCcC
Confidence 9999999988754
No 30
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=53.98 E-value=1e+02 Score=23.89 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=46.1
Q ss_pred CCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEE
Q 021307 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEM 245 (314)
Q Consensus 166 ~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v 245 (314)
...||.-.|.=....++..||+........... ...-+...-.++.||.-..... ...-....|.--+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~--~~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQP--SGSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTC--TTSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCcccc--ccccCCCCcEEEcCeEEE
Confidence 567999999999999999999999888764321 1001222333556654331111 111116678888888887
Q ss_pred Ee
Q 021307 246 AG 247 (314)
Q Consensus 246 ~~ 247 (314)
.+
T Consensus 126 ng 127 (128)
T PF02210_consen 126 NG 127 (128)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 31
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=42.21 E-value=2.5e+02 Score=25.97 Aligned_cols=59 Identities=20% Similarity=0.481 Sum_probs=38.2
Q ss_pred CCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCCcCCCCCccCCC-CCcEEEEEEEEEE
Q 021307 167 AQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYK-YAPFVASLAEMEM 245 (314)
Q Consensus 167 ~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s-~~Pf~a~~~~v~v 245 (314)
..|+.-.|.=....|+|.|||.+|...+.... ...|. -.+| +|-.- -+|..|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS-------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc----------------ccCc--EeeeeccchhhhhhccccC
Confidence 36777788889999999999999999975432 11231 1144 33333 4899999999987
No 32
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=42.04 E-value=1.3e+02 Score=24.01 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=12.1
Q ss_pred EEecCCCCCceEEEEEeeeCCC
Q 021307 97 IKLPSGLSSGVVLAFYLSNADS 118 (314)
Q Consensus 97 ~Kl~~g~s~G~v~AF~l~s~~~ 118 (314)
||+.+. .| +.+||+..+.
T Consensus 63 IkV~P~--~G--~~Yyl~d~dg 80 (105)
T PF11191_consen 63 IKVQPK--AG--PPYYLVDPDG 80 (105)
T ss_pred EEEEeC--CC--CCEEEECCCC
Confidence 344444 56 9999998653
No 33
>PF15240 Pro-rich: Proline-rich
Probab=41.41 E-value=18 Score=32.40 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhccccee
Q 021307 7 NNLILAFLLFFCIMAPKV 24 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (314)
+.||+|+||||+ +||..
T Consensus 3 lVLLSvALLALS-SAQ~~ 19 (179)
T PF15240_consen 3 LVLLSVALLALS-SAQST 19 (179)
T ss_pred hHHHHHHHHHhh-hcccc
Confidence 456777777744 45443
No 34
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.46 E-value=21 Score=28.50 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHH
Q 021307 3 LLLLNNLILAFLLF 16 (314)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (314)
+||..++|++||++
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555555
No 35
>smart00282 LamG Laminin G domain.
Probab=35.69 E-value=2.3e+02 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCCcEEEEEEEcCceEEEEEcCeEEEEE
Q 021307 166 TAQHHYYSIIWNSHHIVFLVDNVPLREF 193 (314)
Q Consensus 166 ~~dFHtY~i~Wtpd~I~fyVDG~~vrt~ 193 (314)
...||.-.|.-....++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4689999999999999999999765443
No 36
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=35.43 E-value=50 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=23.0
Q ss_pred eEEEEEcCeEEEEEecCCCcccCCCC-CceEEEEEeec
Q 021307 180 HIVFLVDNVPLREFPNTGAFSSVYPS-KPMSVYVTIWD 216 (314)
Q Consensus 180 ~I~fyVDG~~vrt~~~~~~~g~~~P~-~Pm~l~lnlW~ 216 (314)
.+.|||||+++.+...... ..++- .|..-.+.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEEEc
Confidence 7889999999966544321 33443 67777776643
No 37
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=34.29 E-value=2e+02 Score=22.75 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=35.6
Q ss_pred CCCCcEEEEEEEcCceEEEEEcCe--EEEEEecCCCcccCCCCCceEEEEEeecC
Q 021307 165 PTAQHHYYSIIWNSHHIVFLVDNV--PLREFPNTGAFSSVYPSKPMSVYVTIWDG 217 (314)
Q Consensus 165 p~~dFHtY~i~Wtpd~I~fyVDG~--~vrt~~~~~~~g~~~P~~Pm~l~lnlW~g 217 (314)
...+|..|.|.|.-..|.+..||. |+-+++.. . |....++-++-|..
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp----~--~~~v~yvGft~w~~ 98 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP----E--PIPVNYVGFTGWGS 98 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEECC----C--CCcccEEEEecCCC
Confidence 367899999999999999999987 77777632 1 44556666666653
No 38
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.62 E-value=1e+02 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=16.4
Q ss_pred EeeCCCEEEEEEecCCCceEEE
Q 021307 63 RINNGSMATLALDKSSGSGLVS 84 (314)
Q Consensus 63 ~~~~g~~l~Ltld~~~ga~i~S 84 (314)
.+.+|..+++.+|..+|.-+..
T Consensus 61 ~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EECCCCEEEEEEcCCCCeEeec
Confidence 4567889999999888765543
No 39
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=24.14 E-value=2e+02 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.2
Q ss_pred ccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCC
Q 021307 56 FGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSG 102 (314)
Q Consensus 56 w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g 102 (314)
..++.+++...++.|+++-.+..-.+-.....+.||.|+=++.||.+
T Consensus 19 ~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 19 FEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 34556666667788887776532111001235799999999999975
No 40
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=24.09 E-value=2.1e+02 Score=21.40 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred cccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCC
Q 021307 55 FFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSG 102 (314)
Q Consensus 55 ~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g 102 (314)
.+.++.+++.-+++.|.++-.+..... ...+.+|+|+=+++||..
T Consensus 17 G~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 17 GFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 345666766667777877776543221 345678999999999976
No 41
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=23.47 E-value=1.1e+02 Score=24.70 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=24.4
Q ss_pred CCCCcEEEEEEEcCceEEEEEcCeEEEEEe
Q 021307 165 PTAQHHYYSIIWNSHHIVFLVDNVPLREFP 194 (314)
Q Consensus 165 p~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~ 194 (314)
+.++-|++.+. .-+.++.+|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46778888888 888999999999997655
No 42
>PHA02752 hypothetical protein; Provisional
Probab=22.34 E-value=5.8e+02 Score=23.09 Aligned_cols=16 Identities=31% Similarity=0.061 Sum_probs=9.5
Q ss_pred ChhhhhhHHHHHHHHH
Q 021307 1 MALLLLNNLILAFLLF 16 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (314)
|++.|+..+..||.+.
T Consensus 1 aa~~LAii~~~AI~A~ 16 (242)
T PHA02752 1 AAAALAIIAGLAIAAF 16 (242)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5666666666666554
No 43
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=20.03 E-value=4.4e+02 Score=22.42 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=29.3
Q ss_pred CceEEEEEcCeEEEEEecCCCcccCCCCCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCC
Q 021307 178 SHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSN 252 (314)
Q Consensus 178 pd~I~fyVDG~~vrt~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~ 252 (314)
-+.-..|.||++|.+=. -| +..+..+.+ ..||+ |.|.++-....||+.+.
T Consensus 52 Gd~~kly~dG~~V~tG~--------~~-~~~~a~~~~-------~~gG~---------y~~~VeLCN~~GCS~S~ 101 (133)
T PF08329_consen 52 GDTAKLYFDGVLVWTGP--------SP-QQKSATFTV-------TKGGR---------YQMQVELCNADGCSTSA 101 (133)
T ss_dssp -SEEEEEETTEEEEEEE-----------SEEEEEEEE--------S-EE---------EEEEEEEEETTEEEE--
T ss_pred CCEEEEEECCEEEEeCC--------Cc-cCceEEEEe-------cCCCE---------EEEEEEEECCCCcccCC
Confidence 36778899999999422 12 222223333 22563 78888888888997654
Done!