BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021308
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 239/306 (78%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++++I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV Y+ GLQ EDGSF+GDI
Sbjct: 78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP++P + +P
Sbjct: 258 IDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPE 317
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 318 EVLQRV 323
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 237/306 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++++I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV Y+ LQ EDGSF+GDI
Sbjct: 78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP+ P + +P
Sbjct: 258 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 318 EVLRRV 323
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 235/306 (76%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++ +I
Sbjct: 26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 86 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 265
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP+ P + +P
Sbjct: 266 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 325
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 326 EVLQRV 331
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 236/306 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L +++E+++ +I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
I+++KL FIL CQD E GG +DRP D VD FHT FG+AGLSLL +KP+ P + +P
Sbjct: 258 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 317
Query: 304 DVVNRI 309
+V+ R+
Sbjct: 318 EVLQRV 323
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/309 (59%), Positives = 231/309 (74%), Gaps = 2/309 (0%)
Query: 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
L DKHV+YI+ + KKDSFE V EH+R+NG YWGL++L +L LD +D+ +VI W+L
Sbjct: 21 NLLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLL 80
Query: 63 KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
CQ +GGF GN HD H+L TLSAVQ+L +D +D +D + V +Y+V LQ EDGSF GD
Sbjct: 81 SCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGD 140
Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
WGEVDTRFSY AI CLS+L+ LDKIN +KAVEYI+SC+N DGGFG PG ESH+GQIF
Sbjct: 141 QWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFT 200
Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242
CVGAL+I ++ +D D LGWWL ERQ+ +GGLNGRPEK DVCYSWWVLS+L IDR+H
Sbjct: 201 CVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLH 260
Query: 243 WINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEY--PGLKPIDPAYA 300
WI+ DKL +IL CQD E GGI+D+P D DVFHT+FG+ GLSL+ Y ++ IDP YA
Sbjct: 261 WIDNDKLKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFKDQIESIDPVYA 320
Query: 301 LPVDVVNRI 309
L + ++
Sbjct: 321 LGTKTLQKL 329
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
+ ++ +K V+YI+S + F S+ + + L IL +++ +D + + W
Sbjct: 163 LDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWW 222
Query: 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
+ + Q +GG G V Y+ + L+ D++ +D DK+ +YI+ Q+ +
Sbjct: 223 LSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGI 282
Query: 121 GDIWGEV-DTRFSYIAICCLSIL 142
D G++ D ++ IC LS++
Sbjct: 283 ADKPGDIPDVFHTFFGICGLSLM 305
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 343 bits (879), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 174/313 (55%), Positives = 218/313 (69%), Gaps = 7/313 (2%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH++YI S++ KK +FE + EHLRLNG YWGLT L +L + +E+VIS++L
Sbjct: 7 LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLS 66
Query: 64 CQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGSF 119
C D+ G FA HD H+L TLSAVQ+LA +D +D+L D+ + ++I G Q EDGSF
Sbjct: 67 CWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSF 126
Query: 120 SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQ 179
GD +GEVDTRF Y A+ LSIL L VD AV++++ C N DGGFG P ESH+ Q
Sbjct: 127 QGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQ 186
Query: 180 IFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 236
F C+GALAIA L + D L GWWLCERQ+ GGLNGRP KLPDVCYSWWVLSSL
Sbjct: 187 AFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLA 246
Query: 237 MIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPID 296
+I R+ WIN +KL +FIL CQD + GGISDRP++ VDVFHT FGVAGLSL+ Y L PID
Sbjct: 247 IIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYDNLVPID 306
Query: 297 PAYALPVDVVNRI 309
P Y +P V ++
Sbjct: 307 PIYCMPKSVTSKF 319
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 152/309 (49%), Positives = 216/309 (69%)
Query: 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
M L DKH+ Y+ + + D + + EHL ++ YW + +L K D +D+E ++S+
Sbjct: 1 MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSF 60
Query: 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
+L C ESGGFA GHD H+ T+ AVQVLA+ D + ++D DKV++YI+GLQNEDGS
Sbjct: 61 LLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMK 120
Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
GD WGE+D RF Y I CL+IL +LD +N + AV++++ C N DGGFG PG ESH +
Sbjct: 121 GDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMV 180
Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
F CV AL I L +D++LLGWW+ ERQVK GGLNGRPEKLPD CY WW LS L +I +
Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGK 240
Query: 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
+ WI++++L+ F+L QD ++GG +DR +DA DV+HT F +AGLSLL++P ++P+DP +
Sbjct: 241 LDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLLQFPNIEPVDPRFC 300
Query: 301 LPVDVVNRI 309
LP++V ++
Sbjct: 301 LPLEVTQKM 309
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 328 bits (840), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 206/299 (68%)
Query: 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
EL D H +I EK K+S+ ++ EHLR++G YW + +D+ +L+ + E++++++L
Sbjct: 23 ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVL 82
Query: 63 KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
C++ GG+ GHD H+L+TL AVQ L +F+ ++ DAD +S Y+ GLQ EDGSF GD
Sbjct: 83 GCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGD 142
Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
+ GEVDTRF+ ++ +L RL +N+D AV +++ C N DGGFG PG ESHSGQI+C
Sbjct: 143 LSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYC 202
Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242
CVGALAIAG L +D+D WL RQ SGGLNGRPEKLPDVCYSWWVL+SL ++ R++
Sbjct: 203 CVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLN 262
Query: 243 WINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYAL 301
+I+ D + KFI CQD E GG +DRP D D FHT FG+A LSL L+ +DP + +
Sbjct: 263 FIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFGDDTLESVDPIFCM 321
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 303 bits (777), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 163/321 (50%), Positives = 211/321 (65%), Gaps = 20/321 (6%)
Query: 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QD 66
KHV+YI+ E + SFE + EHLR+NG YWG+T L + +L A+ ++DVI +I+ C D
Sbjct: 17 KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDD 75
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDIL-DADKVSN---------YIVGLQNE 115
++G F HD H+L TLSA+QVL ++D+ + +L D ++ SN +I GLQ
Sbjct: 76 KTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLP 135
Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
DGSF GD +GEVDTRF Y A+ LS+L L D A +I+ C N DGGFG PG ES
Sbjct: 136 DGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSES 195
Query: 176 HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQV-KSGGLNGRPEKLPDVCYSWW 230
H+ Q+F CVGALAI L +D K L WL ERQV SGG NGRPEKLPDVCYSWW
Sbjct: 196 HAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWW 255
Query: 231 VLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYP 290
VLSSL ++ R +W++ L FIL CQD+ENGG SDRP + DV+HT F +AGLSL++Y
Sbjct: 256 VLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLIDYK 315
Query: 291 --GLKPIDPAYALPVDVVNRI 309
G K IDP Y +PV+V ++
Sbjct: 316 KYGFKEIDPVYCMPVEVTSKF 336
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
++ +K+I ++ SF+ + Y +++L +L L + ++I++C +
Sbjct: 123 ERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFN 182
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE-----DGSFSG 121
GGF G + H + V LA+ +K+D+LD + ++ E G F+G
Sbjct: 183 FDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNG 242
Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGES 175
D +S+ + LSIL+R + +++ +I++C++L+ GGF PG ++
Sbjct: 243 RPEKLPDVCYSWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQT 297
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 162/301 (53%), Gaps = 21/301 (6%)
Query: 7 DKHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64
KH+KY+ K D S V++ R YW L++L ILGKLD+ E IS + +
Sbjct: 32 QKHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQL 88
Query: 65 QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNEDGSFSG 121
+ SGGF G G D H+L T +++ + L D D +++ D++ +++ L+N DGSF
Sbjct: 89 KGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRV 148
Query: 122 DIWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
+ GE D R Y A+C S++ +D + ++++ C+ +GG P E+H G
Sbjct: 149 NNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYT 208
Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVCYSWWVLSSLIMID 239
FC + A+A+ G L ++++ L WL +RQ + G +GR KL D CYSWWV +S +++
Sbjct: 209 FCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVA 268
Query: 240 RVH-----------WINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE 288
+ + N +KL+ +IL C +GG+ D+P D +HT + + GLS +
Sbjct: 269 SGYGSASHKSLPNLFYNPEKLLGYILQCCQSTSGGLRDKPPKRPDQYHTCYCLLGLSSIA 328
Query: 289 Y 289
Y
Sbjct: 329 Y 329
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 147 bits (371), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 160/336 (47%), Gaps = 37/336 (11%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
+D + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVD 273
G +GRP K D CYS+WV ++L ++ + N +K +IL QD GG + PD D
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318
Query: 274 VFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRI 309
H YFG+ GLSL+E G+ + PA + R+
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVSTRTSERL 354
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 160/336 (47%), Gaps = 37/336 (11%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILGDDLG 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
+D + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVD 273
G +GRP K D CYS+WV ++L ++ + N +K +IL QD GG + PD D
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318
Query: 274 VFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRI 309
H YFG+ GLSL+E G+ + PA + R+
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVSTRTSERL 354
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 160/336 (47%), Gaps = 37/336 (11%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
++ + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVD 273
G +GRP K D CYS+WV ++L ++ + N +K +IL QD GG + PD D
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318
Query: 274 VFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRI 309
H YFG+ GLSL+E G+ + PA + R+
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVSTRTSERL 354
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 37/337 (10%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAGN----IGHDP-------------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G+ I +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
++ + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVD 273
G +GRP K D CYS+WV ++L ++ + N +K +IL QD GG + PD D
Sbjct: 259 GYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPD 318
Query: 274 VFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIF 310
H YFG+ GLSL+E G+ + PA + R+
Sbjct: 319 ALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLL 355
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 36/269 (13%)
Query: 76 GHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS 132
H HV+ T +AV L + + +D + + +++ ++ ++G+F+ + GE D+R +
Sbjct: 143 SHTSHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYDSRTT 202
Query: 133 YIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGA 192
Y AI S+L L V++++SC+ +GGFG P E+H G FC V AL+I +
Sbjct: 203 YCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSILNS 262
Query: 193 LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH---------- 242
LH +D + L W+ RQ GG GR KL D CYS+W + I+I
Sbjct: 263 LHKIDMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKKQQQDD 322
Query: 243 -------------WINKDKLVKFILD-CQ--DMENGGISDRPDDAVDVFHTYFGVAGLSL 286
N+ KL ++++ CQ D + G SD P D +HT +G++G+SL
Sbjct: 323 GDGKEGDQQEEGLLFNQAKLQEYVIRFCQQSDKKYSGFSDHPHRGKDYYHTCYGLSGISL 382
Query: 287 LEY-------PGLKPIDPAYALPVDVVNR 308
+Y L + P +N+
Sbjct: 383 SQYNEIGKAIQSLNTFTNTFEQPSPPINK 411
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKV 408
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 21/307 (6%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R HW+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG 291
S+ ++ G
Sbjct: 371 SIAQHFG 377
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 37/338 (10%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + D+++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHDGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237
FC + AL I ++ L W+ RQ++ GG GR KL D CYS+W L +
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPL 310
Query: 238 IDRV------------HWI-NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGL 284
+ R W+ ++ L ++IL C GG+ D+P + D +HT + ++GL
Sbjct: 311 LHRALHAQGDPALSMSRWMFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHTCYCLSGL 370
Query: 285 SLLEYPG----------------LKPIDPAYALPVDVV 306
S+ ++ G L+P P Y + D V
Sbjct: 371 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 4/219 (1%)
Query: 37 YWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF- 94
YW + ++ +LG+ +D E++ + ++ +CQD +GG+AG G PH+ T +AV L
Sbjct: 50 YWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLG 109
Query: 95 --DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
+ ++ +K+ ++ ++ +G F GE+D R Y AI S+L LD +
Sbjct: 110 GEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKN 169
Query: 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS 212
++I+SC+ +GG PG E+H G FC + A+ + G ++ +D L W+ RQ K
Sbjct: 170 VGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKE 229
Query: 213 GGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVK 251
G GR KL D CYS+W ++ ++ R+H I +++ +
Sbjct: 230 CGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQMAE 268
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 34/259 (13%)
Query: 33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA 92
+ Y ++ +L LD ++V +IL CQ GG AG G + H YT + +
Sbjct: 146 VRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMI 205
Query: 93 LFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
L +V+ LD ++ +++V Q ++ F G VD +S+ +++LQRL I ++
Sbjct: 206 LIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQ 265
Query: 153 AVE--YIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV 210
E V+ + C G SH A H+ + + C V
Sbjct: 266 MAEASQFVTVSDAPEEKECLDGTSSH---------------ATSHIRHEGMN-ESCSSDV 309
Query: 211 KSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDD 270
K+ G N S W S + H I L ++IL C ++GG+ D+P
Sbjct: 310 KNIGYN---------FISEWRQSEPLF----HSI---ALQQYILLCSQEQDGGLRDKPGK 353
Query: 271 AVDVFHTYFGVAGLSLLEY 289
D +H+ + ++GLSL +Y
Sbjct: 354 RRDHYHSCYCLSGLSLCQY 372
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 10/192 (5%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL---QRLDKINVDKAVEYIVS 159
D +++ Q+ +G ++G +Y A+ L L + L IN +K ++
Sbjct: 69 DNTVDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGGEKSLASINRNKLYGFMRR 128
Query: 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLN 216
K +GGF GE + C A+++A L+ +D +L+ G ++ Q GGL
Sbjct: 129 MKQPNGGFRMHDEGEI---DVRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLA 185
Query: 217 GRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFH 276
G P Y++ L+++I+I V+ ++ +L+ +++ Q E G R + VD +
Sbjct: 186 GEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKE-CGFQGRTNKLVDGCY 244
Query: 277 TYFGVAGLSLLE 288
+++ ++LL+
Sbjct: 245 SFWQGGAVALLQ 256
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 43/330 (13%)
Query: 23 FESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DVISW-----ILKCQD------ESG 69
+ S + HL L ++ ++ LD+L K D +++E D+I+W IL +D E+
Sbjct: 25 YTSGLPNHLSL--IFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINLENC 82
Query: 70 GFAGN--IGHD-------------------PHVLYTLSAVQVLALF-DKVDILDADKVSN 107
GF G +G + P T A+ +L + D ++ + +
Sbjct: 83 GFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGDDFSGVNKKAIID 142
Query: 108 YIVGLQNE-DGSFSGDI-WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG 165
+ Q E DG+ SG G+ D R + A IL IN + A++YI SC + +
Sbjct: 143 SLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEF 202
Query: 166 GFGCTPGGESHSGQIFCCVGALAIAGALHHVD--KDLLGWWLCERQVKSGGLNGRPEKLP 223
FG TP E+H G +C + +L++ G L ++ K+ L +WL ++Q+ G GR K P
Sbjct: 203 AFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDP 260
Query: 224 DVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAG 283
D CY++W+ +SL+MIDR I+ + FI Q GG++ P DV H+Y + G
Sbjct: 261 DTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEPGQLPDVMHSYLSLVG 320
Query: 284 LSLLEYPGLKPIDPAYALPVDVVNRIFFSK 313
LS P ++ + P L + +F K
Sbjct: 321 LSFGNIPSIQQVIPCLNLSKRAAGKDWFEK 350
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKC 64
+ + YI S + +F + Y + +L +LG+LD ++ +E + W++K
Sbjct: 188 ESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPFKEQLTFWLVKK 247
Query: 65 QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNED-GSFSGDI 123
Q GF G DP Y L + D+ D++D ++ +I Q+E G + +
Sbjct: 248 Q--ITGFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEP 305
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL 163
D SY+++ LS N+ +++ ++ C NL
Sbjct: 306 GQLPDVMHSYLSLVGLSF------GNI-PSIQQVIPCLNL 338
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 34/264 (12%)
Query: 80 HVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW-GEVDTRFSYI 134
H+ T +A+ L+L D +D +D + +++ L+ +G F + GEVDTR Y
Sbjct: 156 HLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYC 215
Query: 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGAL 193
A+ ++L L + + + Y+ +C+N +GGFG P E+H G FC +LAI ++
Sbjct: 216 ALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSM 275
Query: 194 HHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW---INKDKL 249
++ + L W RQ++ G GR KL D CYS+WV S +++ + NK L
Sbjct: 276 DQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAFGYGQCFNKHAL 335
Query: 250 VKFILD-CQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE-----YPGLKP--------- 294
+IL CQ+ E G+ D+P D +HT + + GL++ E P P
Sbjct: 336 RDYILYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAESSYSCTPNDSPHNIKCTPDR 395
Query: 295 ---------IDPAYALPVDVVNRI 309
++P Y LP++ V +I
Sbjct: 396 LIGSSKLTDVNPVYGLPIENVRKI 419
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 11 KYIISVEKKKDSFESVV-MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
+++IS+++ F++ + + + G Y L+ +L L E V++++ CQ+ G
Sbjct: 187 QWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEG 246
Query: 70 GFAGNIGH--DPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWGE 126
GF G+ H + H YT A LA+ +D ++ +K+ + Q E+ F G
Sbjct: 247 GF-GSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKL 305
Query: 127 VDTRFSYIAICCLSILQRL---DKINVDKAVEYIVSC--KNLDGGFGCTPGGESHSGQIF 181
VD +S+ +IL+ N +YI+ C + G PG S
Sbjct: 306 VDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTN 365
Query: 182 CCVGALAIA 190
C+ LA+A
Sbjct: 366 YCLLGLAVA 374
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 7/250 (2%)
Query: 1 MGELAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVI 58
M E+ DK + Y++ + + F S+ L YW L ++ +LG+ +D E + I
Sbjct: 78 MMEIQRDKQLDYLMKGLRQLGPQFSSLDANRPWL--CYWILHSIALLGETVDDELESNAI 135
Query: 59 SWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF--DK-VDILDADKVSNYIVGLQNE 115
++ +CQ GG+ G G PH+ T +AV L DK + ++ +K+S ++ +++
Sbjct: 136 DFLGRCQGSEGGYGGGPGQLPHLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDT 195
Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
G F GE+D R Y AI SIL +D +YI+SC+ +GG G PG E+
Sbjct: 196 SGGFRMHDMGEMDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEA 255
Query: 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSL 235
H G +C + A+ + + ++ D L W RQ G GR KL D CY++W +
Sbjct: 256 HGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPC 315
Query: 236 IMIDRVHWIN 245
+++ R++ N
Sbjct: 316 VLLQRLYSTN 325
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 249 LVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPID 296
L +++L C + +GG D+P D +HT + ++GLS+ ++ LK D
Sbjct: 394 LQRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDED 441
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 90 VLALFDKVDILDADKVSNYIVGLQNEDGSFSG---DIWGEVDTRFSYIAICCLSILQRLD 146
+L L D + +D D + N++ + G F + D R Y+A S+L
Sbjct: 107 LLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLD-FS 165
Query: 147 KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI------AGALHHVDK-- 198
+ +++YI SC+ +GGF P GE+H+G FC + + ++ +L+ ++
Sbjct: 166 LSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSY 225
Query: 199 ---------DLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKL 249
+ L WL RQ+ SGGLNGR K D CY++WVLSSL ++D + +I+ +L
Sbjct: 226 NLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGEL 285
Query: 250 VKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285
K++L GG S P + DV H+ G+ ++
Sbjct: 286 EKYLLLHAQHALGGFSKTPGEFPDVLHSALGLYAMA 321
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 126/294 (42%), Gaps = 57/294 (19%)
Query: 69 GGFAGNIGHD-----PHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNED-GSF-- 119
G NI H P+ L+ L ++ +L ++ + ILD ++ ++ Q D GSF
Sbjct: 89 GSLVMNIPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVS 148
Query: 120 -------SGDIWGEVDTRFSYIAICCLSILQRLDK------INVDKAVEYIVSCKNLDGG 166
G D RF YIA+ L I K I+ +K + YI+S + +G
Sbjct: 149 CLDYKTNCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGA 208
Query: 167 FGCTPGGESHSGQIFCCVGALAIAGALHHVD---KDLLGWWLCERQVKS----------- 212
FG E HSG C + LA+ +L + K+ WL RQV S
Sbjct: 209 FG--AHNEPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELN 266
Query: 213 --------GGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW---INKDKLVKFILD-CQDME 260
GG GR K D CY++W L+SL ++ + W + + ++LD Q
Sbjct: 267 ASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLLTK-DWKMLCQTELVTNYLLDRTQKTL 325
Query: 261 NGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK 314
GG S ++ D++H+ G A L+L+E + +P ++ N FSK+
Sbjct: 326 TGGFSKNDEEDADLYHSCLGSAALALIE----GKFNGELCIPQEIFND--FSKR 373
>sp|P33247|SQHC_ALIAD Squalene--hopene cyclase OS=Alicyclobacillus acidocaldarius subsp.
acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A)
GN=shc PE=1 SV=4
Length = 631
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
D+ Y++ Q ++G + G + V Y+ +C IL R+D+ ++K Y++ +
Sbjct: 16 DRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLC--HILDRVDRDRMEKIRRYLLHEQR 73
Query: 163 LDGGFGCTPGG 173
DG + PGG
Sbjct: 74 EDGTWALYPGG 84
>sp|E7DN64|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1
Length = 763
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 35/158 (22%)
Query: 44 DILGK-LDAVDEEDVISWILKCQDESGGFAG----------------------NIGHDPH 80
+I+G+ +D V D ++ IL Q ++GG + I H+ H
Sbjct: 502 EIVGEAMDPVRLYDSVNVILSLQSKNGGLSAWEPAGAPEYLELLNPTEFFEDIVIEHE-H 560
Query: 81 VLYTLSAVQVLALFDKV----DILDADKVSN----YIVGLQNEDGSFSGDIWGEVDTRFS 132
V T SA+Q L F K+ + D N YI +Q DGS+ G+ WG S
Sbjct: 561 VECTSSAIQALVRFKKLYPGHRTTEVDNFINNGVKYIEDVQEPDGSWYGN-WGVCFIYAS 619
Query: 133 YIAICCLSI--LQRLDKINVDKAVEYIVSCKNLDGGFG 168
+ A+ L+ L + V K+VE+++ + DGG+G
Sbjct: 620 WFALGGLAAVGLSYSNCAAVRKSVEFLLRTQRSDGGWG 657
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1
Length = 765
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK-V 105
G L A + W L+ + + FA + +V T SA+Q L LF K+ K +
Sbjct: 529 GGLSAWEPAGAQEW-LELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEI 587
Query: 106 SNYIVG-------LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEY 156
N+I Q DGS+ G+ WG T S+ A+ L+ + + + KAV++
Sbjct: 588 ENFIANAVRFLEDTQTADGSWYGN-WGVCFTYGSWFALGGLAAAGKTFANCAAIRKAVKF 646
Query: 157 IVSCKNLDGGFG 168
+++ + DGG+G
Sbjct: 647 LLTTQREDGGWG 658
>sp|H2KWF1|PAKSY_ORYSJ Parkeol synthase OS=Oryza sativa subsp. japonica GN=Os11g0189600
PE=1 SV=1
Length = 759
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 79 PHVLYTLSAVQVLALFDKVDILDA--------DKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
P+V T S++Q LALF K+ K +N+I Q DGS+ G WG T
Sbjct: 558 PYVECTSSSIQCLALFKKLHPGHRKEEVENCISKGANFIESSQRSDGSWYGS-WGICFTY 616
Query: 131 FSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
++ A+ L R + V KA ++++S + GG+G
Sbjct: 617 ATWFAVTGLVSAGRTLGNSATVRKACDFLLSKQLPSGGWG 656
>sp|F8WQD0|SHS1_ASTTA Shionone synthase OS=Aster tataricus GN=SHS1 PE=1 SV=1
Length = 761
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 34/153 (22%)
Query: 48 KLDAVDEEDVISWILKCQDESGGFAG----------------------NIGHDPHVLYTL 85
K+D +D ++ IL Q E+GG A I H+ +V T
Sbjct: 507 KMDPEQLKDAVNVILSLQSENGGLAAWEPAGSSNWLEMLNPIEFIEDIVIEHE-YVECTG 565
Query: 86 SAVQVLALFDKVDILDADK--------VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAIC 137
+ ++ L LF K+ K + Y+ Q DGS+ G+ WG T +Y A+
Sbjct: 566 TGMEALVLFKKLYPKHRTKEVESFLTNAARYLDNTQMPDGSWYGE-WGICFTYGTYYALG 624
Query: 138 CLSILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
L+ +++ + ++ KAV +++ + DGG+G
Sbjct: 625 GLAAIEKTYENCQSIRKAVRFLLKTQGEDGGWG 657
>sp|P33990|SQHC_ZYMMO Squalene--hopene cyclase OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=shc PE=3 SV=2
Length = 658
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDG 165
+Y++ Q EDGS+ G WG ++ A+C L++ D + + KAV ++ + +N DG
Sbjct: 491 DYLLKEQEEDGSWFGR-WGVNYIYGTWSALCALNVAALPHDHLAIQKAVAWLKTIQNEDG 549
Query: 166 GFG 168
G+G
Sbjct: 550 GWG 552
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1
Length = 763
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK-V 105
G L A + W L+ + + FA + +V T SA+Q L LF K+ K +
Sbjct: 530 GGLSAWEPAGAQEW-LELLNPTEFFADIVIEHEYVECTSSAIQALVLFKKLYPGHRKKEI 588
Query: 106 SNYIVG-------LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR--LDKINVDKAVEY 156
N+I Q DGS+ G+ WG T S+ A+ L+ + + V KAVE+
Sbjct: 589 DNFITNAVRYLEDTQMPDGSWYGN-WGVCFTYGSWFALGGLAAAGKTYYNCAAVRKAVEF 647
Query: 157 IVSCKNLDGGFG 168
++ + DGG+G
Sbjct: 648 LLKSQMDDGGWG 659
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1
Length = 767
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 56 DVISWILKCQDESGGFA--------------------GNIGHD-PHVLYTLSAVQVLALF 94
D + IL Q+ GGFA G+I D P+V T +A+Q L LF
Sbjct: 524 DAVHVILSLQNTDGGFATYELTRSYHWLELINPAETFGDIVIDYPYVECTSAAIQALTLF 583
Query: 95 DKV-------DILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146
K+ +I + K + +I +Q DGS+ G WG T + I L R
Sbjct: 584 KKLHPGHRREEIENCIAKAAEFIENIQASDGSWYGS-WGVCFTYAGWFGIKGLVAAGRTY 642
Query: 147 K--INVDKAVEYIVSCKNLDGGFG 168
K ++ KA +Y++S + GG+G
Sbjct: 643 KNCSSIHKACDYLLSKELASGGWG 666
>sp|Q764T8|LUPS_GLYGL Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1
Length = 758
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAG---------------------NIGHDPHVLYTL 85
GK++ D ++ IL Q +GGF + +V T
Sbjct: 504 GKMETERFYDAVNVILSLQSSNGGFPAWEPQKAYRWLEKFNPTEFFEDTMIEREYVECTG 563
Query: 86 SAVQVLALFDK---------VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAI 136
SA+Q LALF K +D A K YI +QN DGS+ G WG T ++ A+
Sbjct: 564 SAMQGLALFRKQFPQHRSKEIDRCIA-KAIRYIENMQNPDGSWYG-CWGICYTYGTWFAV 621
Query: 137 CCLSILQR--LDKINVDKAVEYIVSCKNLDGGFG 168
L+ + + +++ KA ++++S + + G+G
Sbjct: 622 EGLTACGKNCHNSLSLRKACQFLLSKQLPNAGWG 655
>sp|E7DN63|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1
Length = 761
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 71 FAGNIGHDPHVLYTLSAVQVLALFDK---------VDILDADKVSNYIVGLQNEDGSFSG 121
FA + +V T S++Q L LF K ++I D Y+ +Q DGS+ G
Sbjct: 551 FADIVIEHEYVECTASSIQALVLFKKLYPGHRTKEINIF-IDNAVKYLEDVQMPDGSWYG 609
Query: 122 DIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
+ WG T S+ A+ L + + V K VE+++ + DGG+G
Sbjct: 610 N-WGVCFTYGSWFALGGLVAAGKSYNNSAAVRKGVEFLLRTQRSDGGWG 657
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1
Length = 758
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)
Query: 49 LDAVDEEDVISWILKCQDESGGFA--------------------GNIGHD-PHVLYTLSA 87
LDA D ++ IL Q+ GG+A G+I D P+V T +A
Sbjct: 507 LDAKRLYDAVNVILSLQNSDGGYATYELTRSYSWLELVNPAETFGDIVIDYPYVECTSAA 566
Query: 88 VQVLALFDKV-------DILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL 139
+Q L F K+ +I + +K + +I +Q+ DGS+ G WG T ++ I L
Sbjct: 567 IQALTAFKKLFPGHRREEIQHSIEKAALFIEKIQSSDGSWYGS-WGVCFTYGTWFGIKGL 625
Query: 140 SILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
R ++ KA ++++S + GG+G
Sbjct: 626 VTAGRTFSSCASIRKACDFLLSKQVASGGWG 656
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1
Length = 757
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 44 DILGK-LDAVDEEDVISWILKCQDESGGFA--------------------GNIGHD-PHV 81
+I+G+ LDA D ++ IL Q+E GGFA G+I D P+V
Sbjct: 501 EIVGEPLDAKRLYDAVNVILSLQNEDGGFATYELTRSYTWLELINPAETFGDIVIDYPYV 560
Query: 82 LYTLSAVQVLALFDKVDILDA--------DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133
T +A+Q L F K+ +K +++I Q DGS+ G WG T ++
Sbjct: 561 ECTSAAIQALTSFKKLYPGHRREEIQCCIEKAASFIEKTQASDGSWYGS-WGVCFTYGTW 619
Query: 134 IAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
+ L + + ++ KA E+++S + GG+G
Sbjct: 620 FGVKGLIAAGKSFNNCSSIRKACEFLLSKQLPSGGWG 656
>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1
Length = 764
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 84 TLSAVQVLALFDKVDILDADK-VSNYIVGL-------QNEDGSFSGDIWGEVDTRFSYIA 135
T SA+Q L LF K+ K V N+I Q DGS+ G+ WG T S+ A
Sbjct: 565 TSSAIQALVLFKKLYPEHRKKEVENFIANAVRFLEYKQTSDGSWYGN-WGICFTYGSWFA 623
Query: 136 ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESH 176
+ L + + + K VE++++ + DGG+ GESH
Sbjct: 624 LNGLVAAGKTYDNCAAIRKGVEFLLTTQREDGGW-----GESH 661
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1
Length = 759
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 26 VVMEHLRLNGAYWGLTTLDIL----GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81
+V EH+ Y + L L G L A + W L+ + + FA + +V
Sbjct: 504 IVGEHMEPERLYDSVNVLLSLQSKNGGLSAWEPAGAQDW-LELLNPTEFFADIVIEHEYV 562
Query: 82 LYTLSAVQVLALFDKV-------DILD-ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133
T SA+ L LF K+ +I D K ++ +Q DG++ G+ WG T ++
Sbjct: 563 ERTSSAIHALVLFKKLYPGHRKKEIEDFIAKSVRFLESIQTSDGTWYGN-WGVCFTYGTW 621
Query: 134 IAICCLSILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
A+ L+ + + + KAV++++ + DGG+G
Sbjct: 622 FALGGLAAAGKTYNSCLAMRKAVDFLLRIQKDDGGWG 658
>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=olpB PE=4 SV=2
Length = 2313
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 205 LCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI--MIDRVHWI--NKDKLVKFILD 255
L R ++ G LNG P+ PDV S+W ++ +D + I K+K VK + D
Sbjct: 2259 LINRALERGPLNGAPKLFPDVNESYWAFGDIMDGALDHSYIIEDEKEKFVKLLED 2313
>sp|O82146|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1
Length = 761
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 84 TLSAVQVLALFDKVDILDADK-----VSN---YIVGLQNEDGSFSGDIWGEVDTRFSYIA 135
T SA+Q + +F K+ K ++N Y+ +Q DGS+ G+ WG T ++ A
Sbjct: 564 TSSAIQAMVMFKKLYPGHRKKEIEVSITNAVQYLEDIQMPDGSWYGN-WGVCFTYGTWFA 622
Query: 136 ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
+ L+ + + + KAV++++ + DGG+G
Sbjct: 623 MGGLTAAGKTYNNCQTLHKAVDFLIKSQRSDGGWG 657
>sp|Q04C22|RPOB_LACDB DNA-directed RNA polymerase subunit beta OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rpoB PE=3 SV=2
Length = 1221
Score = 32.3 bits (72), Expect = 5.1, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ NEDGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNEDGSFVDDV 597
>sp|Q1GBM5|RPOB_LACDA DNA-directed RNA polymerase subunit beta OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rpoB PE=3 SV=1
Length = 1221
Score = 32.3 bits (72), Expect = 5.1, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ NEDGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNEDGSFVDDV 597
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica
GN=Os02g0139700 PE=1 SV=1
Length = 759
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 79 PHVLYTLSAVQVLALFDKV------DILDA--DKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
P+V T +A+Q L F K+ +D K +++I G+Q DGS+ G W T
Sbjct: 559 PYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGS-WAVCFTY 617
Query: 131 FSYIAICCLSILQRLDKIN--VDKAVEYIVSCKNLDGGFG 168
++ + L R K + + KA ++++S + GG+G
Sbjct: 618 GTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWG 657
>sp|A8YXJ8|RPOB_LACH4 DNA-directed RNA polymerase subunit beta OS=Lactobacillus
helveticus (strain DPC 4571) GN=rpoB PE=3 SV=1
Length = 1213
Score = 32.0 bits (71), Expect = 6.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ N+DGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNDDGSFKSDV 597
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,251,175
Number of Sequences: 539616
Number of extensions: 5753927
Number of successful extensions: 10929
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10695
Number of HSP's gapped (non-prelim): 74
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)