Query 021308
Match_columns 314
No_of_seqs 171 out of 1726
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0366 Protein geranylgeranyl 100.0 1.2E-79 2.6E-84 518.6 24.0 312 2-313 16-327 (329)
2 PLN03201 RAB geranylgeranyl tr 100.0 1.1E-76 2.5E-81 540.3 30.9 311 1-311 5-315 (316)
3 PLN02710 farnesyltranstransfer 100.0 1.3E-73 2.7E-78 531.2 29.7 309 1-310 41-432 (439)
4 COG5029 CAL1 Prenyltransferase 100.0 2.5E-71 5.3E-76 480.8 22.2 309 2-310 24-337 (342)
5 KOG0365 Beta subunit of farnes 100.0 5.8E-68 1.3E-72 463.2 21.5 303 6-310 74-412 (423)
6 cd02894 GGTase-II Geranylgeran 100.0 1.9E-66 4.2E-71 469.4 28.3 284 4-287 1-287 (287)
7 cd02893 FTase Protein farnesyl 100.0 4.4E-66 9.6E-71 468.0 27.7 280 6-287 1-299 (299)
8 cd02895 GGTase-I Geranylgerany 100.0 1.1E-65 2.3E-70 466.9 27.3 280 6-287 1-307 (307)
9 KOG0367 Protein geranylgeranyl 100.0 1.6E-64 3.5E-69 433.9 24.9 307 2-310 9-342 (347)
10 cd02890 PTase Protein prenyltr 100.0 1.3E-61 2.9E-66 438.6 27.2 281 6-287 1-286 (286)
11 cd02895 GGTase-I Geranylgerany 100.0 3.4E-47 7.4E-52 345.6 24.1 236 3-238 48-307 (307)
12 cd02894 GGTase-II Geranylgeran 100.0 9.6E-47 2.1E-51 340.9 24.4 236 3-238 48-287 (287)
13 PLN03201 RAB geranylgeranyl tr 100.0 9.2E-47 2E-51 343.9 22.3 240 52-292 8-247 (316)
14 cd02893 FTase Protein farnesyl 100.0 9.8E-46 2.1E-50 335.1 22.0 234 54-289 1-239 (299)
15 PLN02710 farnesyltranstransfer 100.0 2.2E-45 4.7E-50 342.2 21.4 238 51-290 43-284 (439)
16 cd02890 PTase Protein prenyltr 100.0 2E-44 4.3E-49 326.3 24.8 237 2-238 45-286 (286)
17 KOG0366 Protein geranylgeranyl 100.0 2.1E-39 4.5E-44 274.4 21.4 242 1-242 63-305 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 6.5E-37 1.4E-41 266.3 18.1 239 3-241 74-317 (342)
19 cd00688 ISOPREN_C2_like This g 100.0 5.7E-34 1.2E-38 256.5 26.2 276 7-286 2-299 (300)
20 KOG0367 Protein geranylgeranyl 100.0 4.6E-33 1E-37 239.9 21.4 242 1-242 55-323 (347)
21 KOG0365 Beta subunit of farnes 100.0 1.3E-32 2.8E-37 241.4 16.9 234 54-289 74-312 (423)
22 cd00688 ISOPREN_C2_like This g 100.0 1.2E-28 2.6E-33 221.8 22.8 232 4-237 52-299 (300)
23 cd02889 SQCY Squalene cyclase 100.0 4.8E-27 1E-31 218.3 23.3 256 7-267 2-319 (348)
24 COG1689 Uncharacterized protei 99.9 3.6E-25 7.9E-30 183.2 19.7 258 2-288 4-272 (274)
25 TIGR01507 hopene_cyclase squal 99.9 2E-23 4.3E-28 206.1 24.5 260 5-267 288-599 (635)
26 TIGR03463 osq_cycl 2,3-oxidosq 99.9 4.2E-24 9.2E-29 211.0 19.1 213 6-219 330-606 (634)
27 TIGR03463 osq_cycl 2,3-oxidosq 99.9 2.3E-23 4.9E-28 205.9 23.0 260 6-268 278-606 (634)
28 cd02889 SQCY Squalene cyclase 99.9 3.8E-23 8.1E-28 192.2 21.1 230 55-289 2-293 (348)
29 cd02892 SQCY_1 Squalene cyclas 99.9 9.3E-23 2E-27 202.8 24.3 259 6-267 280-605 (634)
30 TIGR01507 hopene_cyclase squal 99.9 2.7E-22 6E-27 198.0 26.2 276 6-290 246-574 (635)
31 cd02892 SQCY_1 Squalene cyclas 99.9 2.6E-22 5.6E-27 199.7 25.8 276 6-290 238-580 (634)
32 TIGR01787 squalene_cyclas squa 99.9 3.5E-22 7.7E-27 197.2 22.5 258 6-267 269-589 (621)
33 PLN02993 lupeol synthase 99.9 7.4E-22 1.6E-26 195.4 19.1 211 6-217 441-722 (763)
34 PLN03012 Camelliol C synthase 99.9 6.6E-22 1.4E-26 195.3 18.4 211 6-217 441-722 (759)
35 TIGR01787 squalene_cyclas squa 99.9 9.3E-21 2E-25 187.1 23.6 273 5-289 228-563 (621)
36 PLN03012 Camelliol C synthase 99.9 3.6E-20 7.7E-25 183.1 20.8 235 30-266 415-722 (759)
37 PLN02993 lupeol synthase 99.8 4.5E-20 9.8E-25 182.7 19.0 235 30-266 415-722 (763)
38 PF13249 Prenyltrans_2: Prenyl 99.8 6.4E-21 1.4E-25 148.5 9.2 109 58-169 1-113 (113)
39 PF13249 Prenyltrans_2: Prenyl 99.8 3.5E-19 7.6E-24 138.6 9.0 109 154-266 1-113 (113)
40 cd02896 complement_C3_C4_C5 Pr 99.7 9.3E-17 2E-21 146.0 18.7 208 7-236 55-295 (297)
41 cd02897 A2M_2 Proteins similar 99.7 4.6E-16 1E-20 141.3 22.8 229 36-285 26-290 (292)
42 cd02896 complement_C3_C4_C5 Pr 99.7 2E-16 4.2E-21 143.9 19.5 209 54-285 54-295 (297)
43 cd02897 A2M_2 Proteins similar 99.7 5E-16 1.1E-20 141.0 21.0 211 6-236 44-290 (292)
44 COG1689 Uncharacterized protei 99.7 1.2E-16 2.5E-21 132.9 15.0 215 51-290 5-227 (274)
45 cd02891 A2M_like Proteins simi 99.4 1.4E-11 3E-16 111.2 19.7 211 53-285 50-280 (282)
46 KOG0497 Oxidosqualene-lanoster 99.4 1.1E-12 2.5E-17 125.8 12.5 181 55-239 515-749 (760)
47 cd02891 A2M_like Proteins simi 99.4 5.7E-11 1.2E-15 107.1 20.6 210 6-236 51-280 (282)
48 PF13243 Prenyltrans_1: Prenyl 99.3 1.3E-12 2.8E-17 100.9 4.4 105 102-210 1-107 (109)
49 PF00432 Prenyltrans: Prenyltr 99.3 2.4E-12 5.2E-17 82.5 4.4 44 196-239 1-44 (44)
50 PF00432 Prenyltrans: Prenyltr 99.3 4.6E-12 9.9E-17 81.3 4.2 44 244-288 1-44 (44)
51 PF07678 A2M_comp: A-macroglob 99.3 1.1E-10 2.4E-15 103.3 14.1 206 58-285 3-242 (246)
52 PF07678 A2M_comp: A-macroglob 99.3 1.7E-10 3.7E-15 102.1 14.8 205 11-236 4-242 (246)
53 PF13243 Prenyltrans_1: Prenyl 99.2 8.6E-12 1.9E-16 96.3 4.4 104 55-162 2-107 (109)
54 KOG0497 Oxidosqualene-lanoster 99.2 7.2E-10 1.6E-14 106.9 17.1 234 31-266 415-721 (760)
55 COG1657 SqhC Squalene cyclase 99.0 1.2E-09 2.6E-14 103.9 6.8 285 7-307 131-473 (517)
56 COG1657 SqhC Squalene cyclase 98.9 4.3E-09 9.3E-14 100.2 8.6 198 19-219 248-482 (517)
57 PLN02592 ent-copalyl diphospha 98.3 4.4E-05 9.5E-10 77.3 18.6 248 8-289 76-375 (800)
58 PLN02279 ent-kaur-16-ene synth 98.0 0.00058 1.3E-08 69.5 19.9 251 4-290 33-331 (784)
59 TIGR02474 pec_lyase pectate ly 97.6 0.00056 1.2E-08 61.3 10.0 132 127-258 41-220 (290)
60 TIGR02474 pec_lyase pectate ly 97.4 0.00096 2.1E-08 59.8 8.8 69 53-121 68-158 (290)
61 KOG1366 Alpha-macroglobulin [P 96.9 0.017 3.7E-07 62.5 13.5 228 35-288 947-1211(1436)
62 PLN02592 ent-copalyl diphospha 96.6 0.27 5.9E-06 50.5 19.6 134 109-269 258-396 (800)
63 PF05817 Ribophorin_II: Oligos 96.3 1.3 2.9E-05 44.6 21.7 115 30-165 46-161 (636)
64 KOG1366 Alpha-macroglobulin [P 95.9 0.064 1.4E-06 58.2 10.8 196 6-218 966-1197(1436)
65 PF09492 Pec_lyase: Pectic aci 95.4 0.033 7.2E-07 50.0 5.8 131 128-258 37-215 (289)
66 PLN02279 ent-kaur-16-ene synth 95.1 0.73 1.6E-05 47.5 15.1 97 54-159 35-135 (784)
67 PF01122 Cobalamin_bind: Eukar 94.4 0.19 4.2E-06 45.9 8.0 158 80-266 140-312 (326)
68 PF09492 Pec_lyase: Pectic aci 90.9 0.52 1.1E-05 42.5 5.6 113 53-167 63-220 (289)
69 PF01122 Cobalamin_bind: Eukar 90.4 1.5 3.3E-05 40.2 8.2 117 38-169 148-279 (326)
70 TIGR01577 oligosac_amyl oligos 84.0 51 0.0011 33.3 17.0 38 32-71 296-333 (616)
71 PF05817 Ribophorin_II: Oligos 79.6 75 0.0016 32.3 16.3 172 32-241 86-270 (636)
72 TIGR01577 oligosac_amyl oligos 79.2 75 0.0016 32.1 15.4 68 150-217 499-584 (616)
73 PF10022 DUF2264: Uncharacteri 69.0 1E+02 0.0022 28.9 20.0 183 49-240 129-346 (361)
74 PF10022 DUF2264: Uncharacteri 59.8 1.5E+02 0.0034 27.7 14.7 185 1-193 129-347 (361)
75 cd00249 AGE AGE domain; N-acyl 56.4 1.7E+02 0.0036 27.1 13.0 114 54-167 16-158 (384)
76 COG1331 Highly conserved prote 49.8 3E+02 0.0065 28.1 17.4 42 102-143 298-344 (667)
77 PF07470 Glyco_hydro_88: Glyco 34.0 1.5E+02 0.0032 27.1 7.0 86 81-166 190-294 (336)
78 PF07944 DUF1680: Putative gly 33.6 89 0.0019 30.8 5.6 23 149-171 84-106 (520)
79 TIGR01535 glucan_glucosid gluc 30.8 4.7E+02 0.01 26.7 10.3 77 81-161 297-386 (648)
80 COG1331 Highly conserved prote 27.9 6.8E+02 0.015 25.7 15.4 26 54-79 185-211 (667)
81 PF07470 Glyco_hydro_88: Glyco 26.0 2E+02 0.0044 26.2 6.4 161 54-214 92-294 (336)
82 COG2373 Large extracellular al 25.6 1.3E+02 0.0028 34.2 5.6 63 53-115 1200-1268(1621)
83 PRK13621 psbV cytochrome c-550 25.3 1.3E+02 0.0029 24.9 4.4 53 102-170 109-164 (170)
84 PRK13617 psbV cytochrome c-550 21.8 75 0.0016 26.4 2.3 67 99-170 99-166 (170)
85 TIGR03046 PS_II_psbV2 photosys 21.2 1.2E+02 0.0025 24.9 3.3 51 150-217 98-152 (155)
86 TIGR01535 glucan_glucosid gluc 21.2 99 0.0022 31.5 3.5 82 30-113 294-386 (648)
No 1
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-79 Score=518.56 Aligned_cols=312 Identities=68% Similarity=1.280 Sum_probs=303.6
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~ 81 (314)
++|.++||++||...-++.-+|.++..++.+++..||.+.+|++|++.....+++++.|+++||+.+|||++.||++||+
T Consensus 16 ~~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hl 95 (329)
T KOG0366|consen 16 DELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHL 95 (329)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHH
Confidence 46789999999999888888999999999999999999999999998877789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021308 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
.+|++|+++|.+.+..+.+|++++..|+..+|++||+|.+..++|.|+|++|||+++|++|+.++.++++++++|+++|-
T Consensus 96 l~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~Cy 175 (329)
T KOG0366|consen 96 LYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCY 175 (329)
T ss_pred HHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhc
Confidence 99999999999999989999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021308 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
|-|||||..||.|||+++.||.+++|+++++++.+|.+.+..||..||.+.||.+|||.|.||+||+||++++|.++|+.
T Consensus 176 N~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl 255 (329)
T KOG0366|consen 176 NFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRL 255 (329)
T ss_pred ccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhccccC
Q 021308 242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK 313 (314)
Q Consensus 242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (314)
+|+|.+++.+||++||+.+.|||+++|++.+|++||++++++|+++|+++|++|||.|++|++++++++|..
T Consensus 256 ~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~~v~~r~~~~~ 327 (329)
T KOG0366|consen 256 HWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPKEVLQRIKVTP 327 (329)
T ss_pred hhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcHHHHhhhcccc
Confidence 999999999999999997789999999999999999999999999999999999999999999999999864
No 2
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.1e-76 Score=540.31 Aligned_cols=311 Identities=85% Similarity=1.487 Sum_probs=297.6
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCc
Q 021308 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~ 80 (314)
|.+++++||++||.++++.+++|.+...++++++.+||+|++|++|+..+..+++++++||++||+++|||++.+++++|
T Consensus 5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h 84 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH 84 (316)
T ss_pred hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence 45789999999999999999999877778999999999999999999877778999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhc
Q 021308 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~ 160 (314)
+.+||+|+++|.+++..+.+|++++++||.++|++||||.+.++++.|+++||||++++.+++..+.++++++++||++|
T Consensus 85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc 164 (316)
T PLN03201 85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999999999899999999999999999999987778899999999999
Q ss_pred cCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021308 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 161 q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
|++||||+..|+.|+|+++||||+++|.+++..+.+|.+++++||.+||..+|||++||||.+|+|||||++++|.+|++
T Consensus 165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~ 244 (316)
T PLN03201 165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDR 244 (316)
T ss_pred cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhccc
Q 021308 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFF 311 (314)
Q Consensus 241 ~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (314)
..++|.+++.+||++||++..|||+++|++.||++||||+|++|+++++++|.++||+++||+++++++++
T Consensus 245 ~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~p~~~~~~~~~~~~~~ 315 (316)
T PLN03201 245 VHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAYALPVDVVNRIGL 315 (316)
T ss_pred ccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHhcc
Confidence 88999999999999999966899999999999999999999999999999999999999999999998865
No 3
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.3e-73 Score=531.17 Aligned_cols=309 Identities=32% Similarity=0.599 Sum_probs=286.1
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhccCCCCcccCCCCCCC
Q 021308 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~ 79 (314)
+.+|++++|++||+++..+ .+..+...|.+++|.+||+|.+|++||. .+.++++++++||.+||+++|||++.|++++
T Consensus 41 ~~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~ 119 (439)
T PLN02710 41 MLELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLP 119 (439)
T ss_pred cccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCc
Confidence 3579999999999999875 5566777899999999999999999997 4566789999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhcC---CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHH
Q 021308 80 HVLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY 156 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~ 156 (314)
|+..||+|+.+|.+|+. ++.+|++++++||.++|++||||...+++|.|+++||||++++.+++..+.++++++++|
T Consensus 120 hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~ 199 (439)
T PLN02710 120 HLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDY 199 (439)
T ss_pred cHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHH
Confidence 99999999999999985 577899999999999999999999999999999999999999999998878889999999
Q ss_pred HHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHH
Q 021308 157 IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 157 l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
|++||++||||+..|+.|+|+++||||+++|.++++.+.+|.+++++||++||..+|||+|||||.+|+|||||++++|.
T Consensus 200 I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~ 279 (439)
T PLN02710 200 ILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (439)
T ss_pred HHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred hhccCc-----------------------------------------------------------ccChHHHHHHHHhhc
Q 021308 237 MIDRVH-----------------------------------------------------------WINKDKLVKFILDCQ 257 (314)
Q Consensus 237 ~l~~~~-----------------------------------------------------------~~~~~~~~~~l~~~Q 257 (314)
+|++.. ++|.+++.+||+.||
T Consensus 280 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~ 359 (439)
T PLN02710 280 LLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCS 359 (439)
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHc
Confidence 998542 256789999999997
Q ss_pred CCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCC--------------------CCCCCCCcccCCHHHHHhcc
Q 021308 258 DMENGGISDRPDDAVDVFHTYFGVAGLSLLEYP--------------------GLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 258 ~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~--------------------~l~~~~~~~~~~~~~~~~~~ 310 (314)
+...|||+++|++.||+|||+|+|+||+++++. -|.++||+++||.+.+.+++
T Consensus 360 q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~~~~~~~ 432 (439)
T PLN02710 360 QVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLDKYHEAI 432 (439)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHHHHHHHH
Confidence 767899999999999999999999999999762 27799999999999988764
No 4
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-71 Score=480.75 Aligned_cols=309 Identities=47% Similarity=0.831 Sum_probs=292.9
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCC-ccCHHHHHHHHHhccCCCCcccCCCCCCCc
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~-~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~ 80 (314)
..|.+++|++|+..+....-.+.++..++.++|.+||.++++.++++.. .+.+|+.+.++++|+.++|||++.|++++|
T Consensus 24 l~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~h 103 (342)
T COG5029 24 LQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSH 103 (342)
T ss_pred cccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchh
Confidence 4678899999999986665566777889999999999999999999765 678999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcC---CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHH
Q 021308 81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l 157 (314)
+.+|++|+++|.+++. +++++++.+..||..+|+|||+|...-.++.|.+..|+|+.+++++|..+.++.+.+++||
T Consensus 104 L~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl 183 (342)
T COG5029 104 LASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYL 183 (342)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999999974 4677888999999999999999999888999999999999999999998888999999999
Q ss_pred HhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCC-HHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHH
Q 021308 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 158 ~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~-~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
++|||.|||||..|+.|+|+++||||+++|++++.++..+ +++++.||.+||.+.|||+||+||.+|+||+||++++|.
T Consensus 184 ~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~ 263 (342)
T COG5029 184 KKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA 263 (342)
T ss_pred HHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence 9999999999999999999999999999999999998887 799999999999999999999999999999999999999
Q ss_pred hhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhcc
Q 021308 237 MIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 237 ~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 310 (314)
++++..++|.+++.+||+.||++..|||+++|++.||+|||+++|+||++++++.|.++||.|++|++.+++++
T Consensus 264 il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~l~~v~p~~clP~e~~~k~k 337 (342)
T COG5029 264 ILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPVDPIYCLPQEVTNKFK 337 (342)
T ss_pred hcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCCCCCCcccCCHHHHHHHH
Confidence 99999999999999999999996699999999999999999999999999999999999999999999999886
No 5
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-68 Score=463.16 Aligned_cols=303 Identities=33% Similarity=0.645 Sum_probs=278.4
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhh
Q 021308 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYT 84 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T 84 (314)
|+||..||.+..++ -+-.+..+|++++|.+||.+++|++|+. .+....+++++||.+||.|.|||++.||+.+|++.|
T Consensus 74 r~kH~~YL~~~Lr~-Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~T 152 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQ-LPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPT 152 (423)
T ss_pred HHHHHHHHHHHHHh-CCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHH
Confidence 89999999998765 2334567899999999999999999995 455678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021308 85 LSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 85 ~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
|+||.+|.+++. ++.++++++..||.++.++||||..+.++|.|+|++|||+++..+++...++-.+...+||.+||
T Consensus 153 YAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQ 232 (423)
T KOG0365|consen 153 YAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQ 232 (423)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcc
Confidence 999999999984 57899999999999999999999999999999999999999999999987777889999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCc-CCCcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021308 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
+++||||..|+.|+|++|||||+|+|+++++.+..|.+++.+|..+||. .+|||+||.||.+|.|||||+.++..++..
T Consensus 233 tyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~ 312 (423)
T KOG0365|consen 233 TYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQA 312 (423)
T ss_pred cccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 799999999999999999999999988864
Q ss_pred C-----c-----ccChHHHHHHHHhh-cCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCC-------------------
Q 021308 241 V-----H-----WINKDKLVKFILDC-QDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYP------------------- 290 (314)
Q Consensus 241 ~-----~-----~~~~~~~~~~l~~~-Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~------------------- 290 (314)
. + .+|.+++.+||+-| |. ++|||+++|++.+|+|||+|.|++|++..++
T Consensus 313 ~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~-~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~~~~~d~~~~~~~ilg~~~ 391 (423)
T KOG0365|consen 313 FYSSAGHSLEHLLFNKEALQEYILLCCQS-PSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYSCAPSDSPHNPDRILGSSK 391 (423)
T ss_pred HhcccccchhhhhcCHHHHHHHHHhhccC-CCCCccCCCCCCcchhhhhhHhcchhHHhhhccCCCCCCCCCcccccCch
Confidence 2 1 57899999999875 65 8999999999999999999999999987541
Q ss_pred -CCCCCCCcccCCHHHHHhcc
Q 021308 291 -GLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 291 -~l~~~~~~~~~~~~~~~~~~ 310 (314)
.|.++||+++||++.|++++
T Consensus 392 n~L~p~~pvyni~~~~~~~a~ 412 (423)
T KOG0365|consen 392 NSLLPVHPVYNIPIDSVRKAI 412 (423)
T ss_pred hhcCccCccccCCHHHHHHHH
Confidence 28899999999999999874
No 6
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.9e-66 Score=469.41 Aligned_cols=284 Identities=65% Similarity=1.263 Sum_probs=269.5
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhcc-CCCCcccCCCCCCCchh
Q 021308 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL 82 (314)
Q Consensus 4 l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q-~~dGGf~~~~~~~~~~~ 82 (314)
|+++||++||+++.+...++.+...|.++++.+||++.+|++|+.....+++++++||++|| +++|||++.+++++|+.
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~ 80 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL 80 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence 57899999999999976677788889999999999999999999876678999999999999 78999999999999999
Q ss_pred hhHHHHHHHHHhcCCCccc--HHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhc
Q 021308 83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (314)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~ 160 (314)
+||+|+++|.+++..+.++ ++++++||.++|++||||.+.+++++|+++||+|++++++++..+.++++++++||++|
T Consensus 81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9999999999998666777 99999999999999999999999999999999999999999987778999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021308 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 161 q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
|++||||+..|+.++|+++||||+++|.+++..+.++.+++++||.++|..+|||++||+|.+|+|||||++++|.+++.
T Consensus 161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~ 240 (287)
T cd02894 161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGR 240 (287)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021308 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 241 ~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
.+++|.+++++||++||+.++|||+++|++.||++|||++|++|+++
T Consensus 241 ~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 241 LHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred ccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 88999999999999999757899999999999999999999999985
No 7
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.4e-66 Score=468.04 Aligned_cols=280 Identities=39% Similarity=0.741 Sum_probs=260.4
Q ss_pred HHHHHHHHHHcccC-CCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhccCCCCcccCCCCCCCchhh
Q 021308 6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (314)
Q Consensus 6 ~~~~~~yl~~~~~~-~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~ 83 (314)
+++|++|++++... +++| ...|.+++|.+||+|.+|++||. ...++++++++||++||++||||++.+++++|+.+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~--~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSF--TSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCccc--cccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 58999999999884 4554 45688999999999999999997 45567899999999999999999999999999999
Q ss_pred hHHHHHHHHHhcC---CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhc
Q 021308 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (314)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~ 160 (314)
||+|+++|.+++. .+.+|++++++||.++|++||||...+.++.|+++||||++++.+|+..+.++++++++||++|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999985 4678899999999999999999999999999999999999999999987778899999999999
Q ss_pred cCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcC-CCcccCCCCCCCCchhHHHHHHHHHhhc
Q 021308 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIMID 239 (314)
Q Consensus 161 q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~~~~d~~yt~~~~~~L~~l~ 239 (314)
|++||||+..|+.|+|+++||||+++|.+++..+.++.+++++||++||.. +|||++||||.+|+|||||++++|.+++
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~ 238 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILE 238 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888999999999999987 9999999999999999999999999998
Q ss_pred cC-------------cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021308 240 RV-------------HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 240 ~~-------------~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
+. .++|.+++.+||+.||+..+|||+++|++.||+|||+|+|++|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl~ 299 (299)
T cd02893 239 AILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSIA 299 (299)
T ss_pred HHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhcC
Confidence 63 3588999999999887657899999999999999999999999973
No 8
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=1.1e-65 Score=466.86 Aligned_cols=280 Identities=36% Similarity=0.640 Sum_probs=258.6
Q ss_pred HHHHHHHHHHcccC-CCCccccccccchhHHHHHHHHHHHhcCCCC---ccCHHHHHHHHHhcc----CCCCcccCCCC-
Q 021308 6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG- 76 (314)
Q Consensus 6 ~~~~~~yl~~~~~~-~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~---~~~~~~~~~~l~~~q----~~dGGf~~~~~- 76 (314)
++||++|++++.++ +.+ +...|+++++.+||+|++|++||... .++++++++||.+|| +++|||++.++
T Consensus 1 ~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~ 78 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL 78 (307)
T ss_pred ChHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence 47999999999874 334 45678999999999999999999754 567899999999999 99999999876
Q ss_pred ---------CCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCC---CCCcccchHHHHHHHHHHhC
Q 021308 77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~---~~~~d~~~ty~al~~l~ll~ 143 (314)
+++|+..||+|+.+|.+|+. .+.+|++++++||.++|++||||+..+ +++.|+++||||++++.+++
T Consensus 79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 47999999999999999975 456799999999999999999999886 78999999999999999999
Q ss_pred CCC--ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCC---cCCHHHHHHHHHccCcCCCcccCC
Q 021308 144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR 218 (314)
Q Consensus 144 ~~~--~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~---~~~~~~~~~~L~~~Q~~~GGf~~~ 218 (314)
..+ .++++++++||.+||++||||+..|+.|+|+++||||+++|.+++..+ .++.+++++||++||+.+|||++|
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 765 578999999999999999999999999999999999999999999875 678999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021308 219 PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 219 ~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
|||.+|+|||||++++|.+|+..+++|.+++.+||+.||+..+|||+++|++.||++||||+|++|+++
T Consensus 239 ~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 239 PNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 999999999999999999999988999999999999999756899999999999999999999999985
No 9
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-64 Score=433.88 Aligned_cols=307 Identities=35% Similarity=0.650 Sum_probs=278.1
Q ss_pred ccccHHHHHHHHHHccc-CCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCC---C-----ccc
Q 021308 2 GELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---G-----GFA 72 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~-~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~d---G-----Gf~ 72 (314)
+++.++||++|++|+.+ -+-+|+ ..|.+++..++|++.+|++|+..+.++++.+++||++.|-.. + ||-
T Consensus 9 ~~~~~~kH~~ff~RhL~llP~~y~--shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~ 86 (347)
T KOG0367|consen 9 SRFERKKHIKFFERHLQLLPSPYQ--SHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFR 86 (347)
T ss_pred chhhHHHHHHHHHHHHHhCCCccc--ccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeee
Confidence 46789999999999876 355554 457889999999999999999988888999999999998421 2 454
Q ss_pred CCC----------CCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccC-CCCCcccchHHHHHHHHH
Q 021308 73 GNI----------GHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSYIAICCLS 140 (314)
Q Consensus 73 ~~~----------~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~d~~~ty~al~~l~ 140 (314)
+.. -++||++.||+++.+|.++|. ++++|++.+++++..+|++||+|... .++++|+|+.|||+++..
T Consensus 87 Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~y 166 (347)
T KOG0367|consen 87 GSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICY 166 (347)
T ss_pred eeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHH
Confidence 321 246899999999999999985 68999999999999999999999754 577999999999999999
Q ss_pred HhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC--C----cCCHHHHHHHHHccCcCCCc
Q 021308 141 ILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--H----HVDKDLLGWWLCERQVKSGG 214 (314)
Q Consensus 141 ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~--~----~~~~~~~~~~L~~~Q~~~GG 214 (314)
+|+.++.++.++++.||++||++||||+..|+.|+|+++||||+++|++++++ + ..+++++++|+..||..+||
T Consensus 167 mLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgG 246 (347)
T KOG0367|consen 167 MLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGG 246 (347)
T ss_pred HhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCC
Confidence 99988889999999999999999999999999999999999999999999876 2 23589999999999999999
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCC
Q 021308 215 LNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKP 294 (314)
Q Consensus 215 f~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~ 294 (314)
|+||+||++|+||+||++++|.+|+....+|.+++.+||+.||++.-|||+++|+..||++|||+++++|++++++.+.+
T Consensus 247 fqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~~~~ 326 (347)
T KOG0367|consen 247 FQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKGLSP 326 (347)
T ss_pred cCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999888999999999999999656999999999999999999999999999999999
Q ss_pred CCCcccCCHHHHHhcc
Q 021308 295 IDPAYALPVDVVNRIF 310 (314)
Q Consensus 295 ~~~~~~~~~~~~~~~~ 310 (314)
+||-++++..+.+++.
T Consensus 327 v~p~l~~s~~~~~r~~ 342 (347)
T KOG0367|consen 327 VCPSLNMSMRASERCC 342 (347)
T ss_pred CCccccccHHHHHHHH
Confidence 9999999999999875
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.3e-61 Score=438.61 Aligned_cols=281 Identities=47% Similarity=0.886 Sum_probs=263.6
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhcc-CCCCcccCCCCCCCchhh
Q 021308 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY 83 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q-~~dGGf~~~~~~~~~~~~ 83 (314)
++||++||++++... ++.+...++.+++.+||+|.+|++||. .+..+++++++||++|| ++||||+..+++++|+..
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~ 79 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS 79 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence 589999999999876 677777899999999999999999997 45668999999999999 999999999999999999
Q ss_pred hHHHHHHHHHhcC--CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021308 84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
||+|+.+|.+++. .+.++++++++||.++|++||||...++++.|+++||+++.++.+++....++++++++||++||
T Consensus 80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999997 57788999999999999999999998899999999999999999999876678999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCC-cccCCCCCCCCchhHHHHHHHHHhhcc
Q 021308 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~G-Gf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
++||||+..|+.++|+++||||+++|.+++..+.++++++++||+++|..+| ||+++|+|.+|+|||||++++|.+++.
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~ 239 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence 9999999999999999999999999999999888899999999999998887 999999999999999999999999998
Q ss_pred CcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhcc
Q 021308 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLL 287 (314)
Q Consensus 241 ~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~ 287 (314)
..+++.+++.+||+.||+..+|||+++|++.||++||||+|++|+++
T Consensus 240 ~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 240 LHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred ccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 88899999999999554438999999999999999999999999985
No 11
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=3.4e-47 Score=345.63 Aligned_cols=236 Identities=23% Similarity=0.356 Sum_probs=218.5
Q ss_pred cccHHHHHHHHHHcc----cCCCCcccccc----------ccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccCC
Q 021308 3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE 67 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~----~~~g~~~~~~~----------~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~~ 67 (314)
+.++++.++||.++| +++|+|..... +..+++.||||+.+|.+|+.. ..++++++++||.+||++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 578999999999999 99999976432 568999999999999999863 346899999999999999
Q ss_pred CCcccCCC---CCCCchhhhHHHHHHHHHhcCCC--cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHh
Q 021308 68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (314)
Q Consensus 68 dGGf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll 142 (314)
||||+..+ +.++|+..||+|+.+|.+|+..+ .++++++++||.++|++||||+..+..|+|..+||||+++|.+|
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL 207 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL 207 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence 99999987 78999999999999999999755 57899999999999999999999999999999999999999999
Q ss_pred CCCC---ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC-cCCCcccCC
Q 021308 143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGR 218 (314)
Q Consensus 143 ~~~~---~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~ 218 (314)
+... .++.+++++||.+||+++|||+.+|+.++|+++|||++++|.+++..+.+|.+++.+||+++| ..+|||+++
T Consensus 208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~ 287 (307)
T cd02895 208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN 287 (307)
T ss_pred CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence 9864 688999999999999999999999999999999999999999999888899999999999877 569999999
Q ss_pred CCCCCCchhHHHHHHHHHhh
Q 021308 219 PEKLPDVCYSWWVLSSLIMI 238 (314)
Q Consensus 219 ~~~~~d~~yt~~~~~~L~~l 238 (314)
|++.+|++||||++++|+++
T Consensus 288 p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 288 PDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCChhHHHHHHHHHHhC
Confidence 99999999999999999874
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=9.6e-47 Score=340.93 Aligned_cols=236 Identities=23% Similarity=0.393 Sum_probs=219.5
Q ss_pred cccHHHHHHHHHHcc-cCCCCccccccccchhHHHHHHHHHHHhcCCCCccC--HHHHHHHHHhccCCCCcccCCCCCCC
Q 021308 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP 79 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~-~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~--~~~~~~~l~~~q~~dGGf~~~~~~~~ 79 (314)
.++++++++||.++| .++|+|.......+++..||.|+.+|.+++....++ ++++++||.+||++||||+..++.++
T Consensus 48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~ 127 (287)
T cd02894 48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV 127 (287)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence 468899999999999 679999876555678889999999999987544445 89999999999999999999988999
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHh
Q 021308 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~ 159 (314)
|+..||+|+++|.+++..+.++++++++||.++|++||||+.++++++|+++|||++++|.+++..+.++++++++||.+
T Consensus 128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~ 207 (287)
T cd02894 128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE 207 (287)
T ss_pred hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence 99999999999999987778899999999999999999999999999999999999999999998777899999999999
Q ss_pred ccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC-cCCCcccCCCCCCCCchhHHHHHHHHHhh
Q 021308 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVCYSWWVLSSLIMI 238 (314)
Q Consensus 160 ~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~~~~~~d~~yt~~~~~~L~~l 238 (314)
||+++|||+.+|+.++|+++|||++++|.+++..+..|.+++.+||+++| ..+|||+++|++.+|+|||||++++|+++
T Consensus 208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999887789999999999999 57999999999999999999999999875
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=9.2e-47 Score=343.87 Aligned_cols=240 Identities=20% Similarity=0.360 Sum_probs=221.7
Q ss_pred cCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccch
Q 021308 52 VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF 131 (314)
Q Consensus 52 ~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ 131 (314)
..++++++||.++|+.+|.|.........+..+|+++.+|.+|+..+.++++++++||.++|++||||++.+..++|+.+
T Consensus 8 l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~ 87 (316)
T PLN03201 8 LVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILY 87 (316)
T ss_pred ccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHH
Confidence 46899999999999988888644333456668999999999999877889999999999999999999998888899999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcC
Q 021308 132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (314)
Q Consensus 132 ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~ 211 (314)
||+|+.+|.+++..+.++++++++||+++|++||||+..++.++|.++||||++++.+++..+.++++++++||++||+.
T Consensus 88 Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~ 167 (316)
T PLN03201 88 TLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNF 167 (316)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCC
Confidence 99999999999877778899999999999999999999999999999999999999999987778899999999999999
Q ss_pred CCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCC
Q 021308 212 SGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPG 291 (314)
Q Consensus 212 ~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~ 291 (314)
||||+++|++++|.+||||++++|.+++..+.+|.+.+++||..||. .+|||+++|++.||.+||||++++|+++++..
T Consensus 168 dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~-~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~ 246 (316)
T PLN03201 168 DGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVH 246 (316)
T ss_pred CCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC-CCCCcCCCCCCCCchHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999998888999999999999998 68999999999999999999999999998754
Q ss_pred C
Q 021308 292 L 292 (314)
Q Consensus 292 l 292 (314)
+
T Consensus 247 ~ 247 (316)
T PLN03201 247 W 247 (316)
T ss_pred c
Confidence 3
No 14
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=9.8e-46 Score=335.12 Aligned_cols=234 Identities=21% Similarity=0.331 Sum_probs=214.6
Q ss_pred HHHHHHHHHhccC-CCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCCCCCcccch
Q 021308 54 EEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF 131 (314)
Q Consensus 54 ~~~~~~~l~~~q~-~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ 131 (314)
++++++|+.+|.. .+++|...+ .++++.+|+++.+|.+|+. .+..+++++++||.++|++||||.+.++.++|+.+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~d--~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSLD--ASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCccccccc--cccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 4689999999977 456666554 4678899999999999986 56667899999999999999999999888999999
Q ss_pred HHHHHHHHHHhCC---CCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHcc
Q 021308 132 SYIAICCLSILQR---LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (314)
Q Consensus 132 ty~al~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~ 208 (314)
||+|+.+|.+++. ...++++++++||++||++||||+..|+.|+|.+.||||++++.+++..+..+.+++++||.+|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999986 3456788999999999999999999999999999999999999999977667789999999999
Q ss_pred CcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccC
Q 021308 209 QVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 209 Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~ 288 (314)
|+.+|||+++|++++|.+||||++++|.+++..+.+|.+++++||..||++.+|||+++|++.||++||||.+++|++++
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~ 238 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILE 238 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999998458999999999999999999999999997
Q ss_pred C
Q 021308 289 Y 289 (314)
Q Consensus 289 ~ 289 (314)
.
T Consensus 239 ~ 239 (299)
T cd02893 239 A 239 (299)
T ss_pred H
Confidence 5
No 15
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=2.2e-45 Score=342.19 Aligned_cols=238 Identities=18% Similarity=0.299 Sum_probs=216.1
Q ss_pred ccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCCCCCccc
Q 021308 51 AVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDT 129 (314)
Q Consensus 51 ~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~ 129 (314)
...+++.++|+.++-..-+. .......+.++.||+++.+|.+|+. .+..+++++++||.++|++||||++.++.++|+
T Consensus 43 ~l~~~~H~~yl~~~l~~lp~-~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl 121 (439)
T PLN02710 43 ELWREKHLEYLTRGLRQLGP-SFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHL 121 (439)
T ss_pred cccHHHHHHHHHHHhhcCCh-hhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccH
Confidence 45799999999988653221 1111234678999999999999997 567788999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCC---CCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHH
Q 021308 130 RFSYIAICCLSILQR---LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC 206 (314)
Q Consensus 130 ~~ty~al~~l~ll~~---~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~ 206 (314)
.+||+|+.+|.++|. ...++++++++||++||++||||+..++.|+|.+.||||++++.+++..+..+.+++++||+
T Consensus 122 ~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~ 201 (439)
T PLN02710 122 ATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYIL 201 (439)
T ss_pred HHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHH
Confidence 999999999999986 34578999999999999999999999999999999999999999999877778999999999
Q ss_pred ccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhc
Q 021308 207 ERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSL 286 (314)
Q Consensus 207 ~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l 286 (314)
+||+.+|||+++|++++|.+||||++++|.+|+..+.+|.+++++||..||+ .+|||+++|++.+|.+||||.+++|+|
T Consensus 202 scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~-~~GGF~GR~nKl~D~CYSfW~~a~L~l 280 (439)
T PLN02710 202 SCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (439)
T ss_pred HhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcC-cCCCcCCCCCCCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999888999999999999999 799999999999999999999999999
Q ss_pred cCCC
Q 021308 287 LEYP 290 (314)
Q Consensus 287 ~~~~ 290 (314)
+++.
T Consensus 281 L~~~ 284 (439)
T PLN02710 281 LQQL 284 (439)
T ss_pred HHHH
Confidence 9864
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2e-44 Score=326.33 Aligned_cols=237 Identities=26% Similarity=0.492 Sum_probs=221.5
Q ss_pred ccccHHHHHHHHHHcc-cCCCCccccccccchhHHHHHHHHHHHhcCC--CCccCHHHHHHHHHhccCCCCcccCCCCCC
Q 021308 2 GELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHD 78 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~-~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~--~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~ 78 (314)
...+++++++||+++| +++|+|.+...+.+++..||+|+.+|.++|. ...++++++++||.++|++||||...+..+
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~ 124 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGE 124 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCC
Confidence 3568899999999999 9999998876778899999999999999997 356678999999999999999999988889
Q ss_pred CchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHH
Q 021308 79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV 158 (314)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~ 158 (314)
+|+..||+|+.+|.+++.....+++++++||.++|++||||+..+.+++|+++|||++++|.+++..+.++++++++||.
T Consensus 125 ~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~ 204 (286)
T cd02890 125 VDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLV 204 (286)
T ss_pred chHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999999999999999766678999999999999999999999999999999999999999999887889999999999
Q ss_pred hccCCCC-CCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHH-ccCcCCCcccCCCCCCCCchhHHHHHHHHH
Q 021308 159 SCKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 159 ~~q~~dG-Gf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~-~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
+||+++| ||+..|+.++|+++|||++++|.+++..+.++.+++.+||+ ++|..+|||+++|++.+|.|||||++.+|+
T Consensus 205 ~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~ls 284 (286)
T cd02890 205 ERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLS 284 (286)
T ss_pred HhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHH
Confidence 9999998 99999999999999999999999999877788999999999 678999999999999999999999999998
Q ss_pred hh
Q 021308 237 MI 238 (314)
Q Consensus 237 ~l 238 (314)
++
T Consensus 285 l~ 286 (286)
T cd02890 285 LL 286 (286)
T ss_pred cC
Confidence 64
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=274.42 Aligned_cols=242 Identities=21% Similarity=0.356 Sum_probs=227.6
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCc
Q 021308 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~ 80 (314)
+.++++|+.+.|+.+||+++|+|.....-.+++..|..||.+|++.....-.++++++.||...|++||.|.+-.-.+-+
T Consensus 63 le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvD 142 (329)
T KOG0366|consen 63 LERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVD 142 (329)
T ss_pred cchhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccc
Confidence 35678999999999999999999766655668888999999999998776678999999999999999999887666888
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhc
Q 021308 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~ 160 (314)
...+|+|+.+|.+|+..+.++++++++|+.+|.|-||||+..|+.|++...+||.+++|+++|+++.++.+.+-.||..+
T Consensus 143 TRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceR 222 (329)
T KOG0366|consen 143 TRFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCER 222 (329)
T ss_pred hhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCc-CCCcccCCCCCCCCchhHHHHHHHHHhhc
Q 021308 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVCYSWWVLSSLIMID 239 (314)
Q Consensus 161 q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~~~~d~~yt~~~~~~L~~l~ 239 (314)
|.+.||...+|..-+|.+|.+|++++|+++|+.+-+|.+++.+|+++||. +.|||+.||+..+|+++|+..+++|++|+
T Consensus 223 Q~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg 302 (329)
T KOG0366|consen 223 QLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLG 302 (329)
T ss_pred cCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhC
Confidence 99999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred cCc
Q 021308 240 RVH 242 (314)
Q Consensus 240 ~~~ 242 (314)
...
T Consensus 303 ~~~ 305 (329)
T KOG0366|consen 303 YPG 305 (329)
T ss_pred CCC
Confidence 764
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=266.25 Aligned_cols=239 Identities=21% Similarity=0.401 Sum_probs=220.5
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCCCCCC
Q 021308 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~ 79 (314)
..++|+.+-|+.+++.+.|+|+.......++..||+|+.+|.+++.. ..++++.+.+||.+||+|||+|-...-.+.
T Consensus 74 ~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gev 153 (342)
T COG5029 74 TVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEV 153 (342)
T ss_pred hhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcc
Confidence 45688999999999999999987777778999999999999999743 345678899999999999999987666788
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccC-HHHHHHHHH
Q 021308 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIV 158 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~-~~~~~~~l~ 158 (314)
+....|.|+.+|.++|..+..+.+..++||++||+-||||+..|+.|++..+||||+++|++|+.+...+ ++++++||.
T Consensus 154 Dtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~ 233 (342)
T COG5029 154 DTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLA 233 (342)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 8888999999999999888888999999999999999999999999999999999999999999987777 799999999
Q ss_pred hccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcC-CCcccCCCCCCCCchhHHHHHHHHHh
Q 021308 159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 159 ~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~~~~d~~yt~~~~~~L~~ 237 (314)
++|-+.|||..+++.-.|.+|.||++++|++++..+-++.+++.+||+.||.+ .|||+.+|++.+|+++|.+++++|++
T Consensus 234 ~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl 313 (342)
T COG5029 234 ERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313 (342)
T ss_pred HcccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988889999999999988754 99999999999999999999999999
Q ss_pred hccC
Q 021308 238 IDRV 241 (314)
Q Consensus 238 l~~~ 241 (314)
++..
T Consensus 314 ~~~k 317 (342)
T COG5029 314 IEYK 317 (342)
T ss_pred hccC
Confidence 9864
No 19
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=100.00 E-value=5.7e-34 Score=256.52 Aligned_cols=276 Identities=35% Similarity=0.572 Sum_probs=236.8
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC------CccCHHHHHHHHHhccCCCCcccCCCCC-CC
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-DP 79 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~------~~~~~~~~~~~l~~~q~~dGGf~~~~~~-~~ 79 (314)
+++++||.+.+.++|+|... .....++.+++++.++..++.. ....++++++||.++|++||||+..++. .+
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~ 80 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQS-LCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80 (300)
T ss_pred hhHHHHHHHccccCCCcccc-CCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence 68999999999999987332 2344778899999999988742 3456899999999999999999998776 78
Q ss_pred chhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCCCCCcccCCCC-------CcccchHHHHHHHHHHhCCCC-cc
Q 021308 80 HVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-KI 148 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~-------~~d~~~ty~al~~l~ll~~~~-~~ 148 (314)
++..|++++.+|..++.. ....++++++||.+.|++||+|...... ..++..|++++.+|.+++... ..
T Consensus 81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~ 160 (300)
T cd00688 81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160 (300)
T ss_pred chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence 999999999999999752 4446889999999999999999865432 678889999999999998743 45
Q ss_pred CHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCC---CCCCCc
Q 021308 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPDV 225 (314)
Q Consensus 149 ~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~---~~~~d~ 225 (314)
.++++++||.++|++|||| .++.+++...|++++.+|..++.......+++++||+++|..+|||...+ .+.+|.
T Consensus 161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~ 238 (300)
T cd00688 161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS 238 (300)
T ss_pred HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence 7899999999999999999 67778899999999999999886544568899999999999999998875 778999
Q ss_pred hhHHHHHHHHHhhccC-cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhc
Q 021308 226 CYSWWVLSSLIMIDRV-HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSL 286 (314)
Q Consensus 226 ~yt~~~~~~L~~l~~~-~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l 286 (314)
++++|++.+|..++.. .....+++++||..+|+ .+|||...|...+|.++|+++|.+|+.
T Consensus 239 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~-~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 239 CYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQN-EDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred HHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccC-CCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 9999999999998853 23457889999999998 799999999999999999999999975
No 20
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=239.87 Aligned_cols=242 Identities=22% Similarity=0.396 Sum_probs=214.7
Q ss_pred CccccHHHHHHHHHHcccCC---CC-----cccc----------ccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHH
Q 021308 1 MGELAADKHVKYIISVEKKK---DS-----FESV----------VMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWI 61 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~---g~-----~~~~----------~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l 61 (314)
++.++++.+++|+.+.|-.+ .+ |.+. ..+..++..||+++++|.+||.+ ..++++.+++++
T Consensus 55 ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v 134 (347)
T KOG0367|consen 55 LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFV 134 (347)
T ss_pred hhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHH
Confidence 35678999999999988532 22 2211 23456788999999999999964 667899999999
Q ss_pred HhccCCCCcccCC-CCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHH
Q 021308 62 LKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLS 140 (314)
Q Consensus 62 ~~~q~~dGGf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ 140 (314)
..||.+||.|... .|.+++....|+|+.++.+|+..+.+|.++++.||+++|+-||||+..|++|++..+||||+++|+
T Consensus 135 ~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~ 214 (347)
T KOG0367|consen 135 SACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLA 214 (347)
T ss_pred HHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHH
Confidence 9999999999864 367889999999999999999888999999999999999999999999999999999999999999
Q ss_pred HhCCC------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcC-CC
Q 021308 141 ILQRL------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SG 213 (314)
Q Consensus 141 ll~~~------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~-~G 213 (314)
+++.+ +..+++++++|+..+|..+|||..+++.+.|.+|+||..++|.+++....++.+++..||+++|.. -|
T Consensus 215 L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iG 294 (347)
T KOG0367|consen 215 LMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIG 294 (347)
T ss_pred HHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcC
Confidence 99975 233589999999999999999999999999999999999999999887778899999999999966 59
Q ss_pred cccCCCCCCCCchhHHHHHHHHHhhccCc
Q 021308 214 GLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242 (314)
Q Consensus 214 Gf~~~~~~~~d~~yt~~~~~~L~~l~~~~ 242 (314)
||+..|+..||+.+||..+.+|++++...
T Consensus 295 GFsK~P~~~pD~~HsylG~~alal~ee~~ 323 (347)
T KOG0367|consen 295 GFSKWPEEDPDLLHSYLGLAALALLEEKG 323 (347)
T ss_pred cccCCCccCchHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999764
No 21
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=241.38 Aligned_cols=234 Identities=19% Similarity=0.300 Sum_probs=207.6
Q ss_pred HHHHHHHHHhccCC-CCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCCCCCcccch
Q 021308 54 EEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF 131 (314)
Q Consensus 54 ~~~~~~~l~~~q~~-dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ 131 (314)
+++...||.+.-.. .--|... ..+..+..|+.+.+|++|++ .+....+++++||..||.|.|||++.|++.+++.+
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~~L--DASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~ 151 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYTCL--DASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP 151 (423)
T ss_pred HHHHHHHHHHHHHhCCCccccc--ccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence 77888888875322 1123222 24678999999999999995 45555889999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC---CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHcc
Q 021308 132 SYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER 208 (314)
Q Consensus 132 ty~al~~l~ll~~~---~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~ 208 (314)
||+|+.+|.+++.. +.++++++.+||.+++++||||-...+.|.|.+..|||++.-.+++.+.+.-.+.+.+||.+|
T Consensus 152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C 231 (423)
T KOG0365|consen 152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC 231 (423)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence 99999999999863 457899999999999999999999988999999999999999999887555578899999999
Q ss_pred CcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccC
Q 021308 209 QVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 209 Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~ 288 (314)
|+.+|||+|.|+.+++..|||+++++|.+|+...-.|.+++.+|..++|.+.+|||.++.++.+|-++|||.-+...|+.
T Consensus 232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~ 311 (423)
T KOG0365|consen 232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQ 311 (423)
T ss_pred ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHH
Confidence 99999999999999999999999999999999888999999999999999789999999999999999999999988885
Q ss_pred C
Q 021308 289 Y 289 (314)
Q Consensus 289 ~ 289 (314)
.
T Consensus 312 ~ 312 (423)
T KOG0365|consen 312 A 312 (423)
T ss_pred H
Confidence 3
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=1.2e-28 Score=221.80 Aligned_cols=232 Identities=27% Similarity=0.347 Sum_probs=201.8
Q ss_pred ccHHHHHHHHHHcccCCCCccccccc-cchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCCCC--
Q 021308 4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-- 77 (314)
Q Consensus 4 l~~~~~~~yl~~~~~~~g~~~~~~~~-~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~~~-- 77 (314)
-+++++++||.+.|++||+|.++... ..+++.|++++.+|..++.. .....+++++||.++|++||||......
T Consensus 52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 131 (300)
T cd00688 52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH 131 (300)
T ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence 35789999999999999999887655 67899999999999999863 3456889999999999999999876543
Q ss_pred -----CCchhhhHHHHHHHHHhcCCC-cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHH
Q 021308 78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (314)
Q Consensus 78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~ 151 (314)
.+++..|++++.+|.+++... ..+++++++||.++|++||+| .++.+.++..+++++.+|..++......++
T Consensus 132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~ 209 (300)
T cd00688 132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK 209 (300)
T ss_pred cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence 678999999999999998632 456899999999999999999 566778999999999999999875456788
Q ss_pred HHHHHHHhccCCCCCCCCCC---CCccchhhhHHHHHHHHHhhcC-CcCCHHHHHHHHHccCcCCCcccCCCCCCCCchh
Q 021308 152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY 227 (314)
Q Consensus 152 ~~~~~l~~~q~~dGGf~~~p---~~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~y 227 (314)
++++||+++|..+|||+..+ ...++..+|++++.+|..++.. +....+++++||+++|..+|||...|.+.+|+++
T Consensus 210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~ 289 (300)
T cd00688 210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH 289 (300)
T ss_pred HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence 99999999999999998774 6678889999999999888764 3456899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 021308 228 SWWVLSSLIM 237 (314)
Q Consensus 228 t~~~~~~L~~ 237 (314)
|+|++.+|..
T Consensus 290 t~~al~aL~~ 299 (300)
T cd00688 290 TVFALLALSL 299 (300)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 23
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.96 E-value=4.8e-27 Score=218.29 Aligned_cols=256 Identities=19% Similarity=0.224 Sum_probs=197.2
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcc--------------CCCCc
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LDAVDEEDVISWILKCQ--------------DESGG 70 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~--~~~~~~~~~~~~l~~~q--------------~~dGG 70 (314)
++.++||.+.|++||+|.... .+++.|.+++.+|...|. ......+++++||.++| .++||
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 688999999999999997543 677789999999988885 33456899999999999 68999
Q ss_pred ccCCCC--CCCchhhhHHHHHHHHHhcCCC-------cccHHHHHHHHHhccCCCCCcccCCC-----------------
Q 021308 71 FAGNIG--HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIW----------------- 124 (314)
Q Consensus 71 f~~~~~--~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~----------------- 124 (314)
|+.... ..++...|..++.+|..++... ...++++++||.+.|++||+|.....
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI 158 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence 986532 2356678999999988876532 22467899999999999999974211
Q ss_pred --CCcccchHHHHHHHHHHhCCCCc-------cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC-C
Q 021308 125 --GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-H 194 (314)
Q Consensus 125 --~~~d~~~ty~al~~l~ll~~~~~-------~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-~ 194 (314)
..+++..|..++.+|..++.... ..++++++||+++|++||+|....+ ..+...|++++.+|..+|.. .
T Consensus 159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~ 237 (348)
T cd02889 159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDEN 237 (348)
T ss_pred ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcC
Confidence 12345567778888887775322 3567899999999999999964322 34555677888888887753 2
Q ss_pred cCCHHHHHHHHHccCcCCCcccCC----------CCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCc
Q 021308 195 HVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGI 264 (314)
Q Consensus 195 ~~~~~~~~~~L~~~Q~~~GGf~~~----------~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf 264 (314)
...++++++||.++|.++|||... +...++++.|.|++.+|...+.......+++++||.++|+ .+|||
T Consensus 238 ~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~-~dG~f 316 (348)
T cd02889 238 SPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQ-EDGDW 316 (348)
T ss_pred cHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CCCCc
Confidence 345789999999999999999753 2345788999999999988876544456889999999999 79999
Q ss_pred CCC
Q 021308 265 SDR 267 (314)
Q Consensus 265 ~~~ 267 (314)
..-
T Consensus 317 ~~~ 319 (348)
T cd02889 317 PQE 319 (348)
T ss_pred CCc
Confidence 983
No 24
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=183.24 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=193.4
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhc-cCCCCcccCCCCCCCc
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPH 80 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~-q~~dGGf~~~~~~~~~ 80 (314)
..+|.++.++||+++|++||||+++..-+..++.||||+.++.+||..++ .++++++||.+. |..
T Consensus 4 ~~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~------------- 69 (274)
T COG1689 4 RYINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTA------------- 69 (274)
T ss_pred hhhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHh-------------
Confidence 45788999999999999999999887666557999999999999998764 699999999983 433
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHH-HHHHHHhccCC------CCC-cccCCCCCcccchHHHHHHHHHHhCCCCccCHHH
Q 021308 81 VLYTLSAVQVLALFDKVDILDADK-VSNYIVGLQNE------DGS-FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~-~~~~l~~~Q~~------dGg-f~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 152 (314)
....++++.+|.+++..+ .++++ .+.+++-...+ +|+ .. -.....+..|||...+|.+.+.. ..+.
T Consensus 70 ~~~~a~~~~~l~~lg~~d-~~r~~~~l~~~~~~~~e~Kf~~~lggs~~--f~t~~~Le~ty~~~~~l~~~n~~---~~eE 143 (274)
T COG1689 70 GVGVAMAIEFLRILGAKD-LARNKMLLLFLKYNPLEEKFAVGLGGSEE--FGTATPLEATYWMMSALNMVNYE---YLEE 143 (274)
T ss_pred hhHHHHHHHHHHHhcccc-cchhhHHHHHhhcCchhHHHhhhcCceee--cCCCchHHHHHHHHHHHHHhCcC---chHH
Confidence 234456788888888532 23332 22333222221 222 21 12234578899999999998852 4567
Q ss_pred HHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCC-chhHHHH
Q 021308 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD-VCYSWWV 231 (314)
Q Consensus 153 ~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d-~~yt~~~ 231 (314)
+.+|+.+.|+.+|++..-.-.-+....||.|+-.|...+ ..+...+|-++| -.+|||+..|+..|. +.-||++
T Consensus 144 ~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya 217 (274)
T COG1689 144 MKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCC-GDWGGFTEVPNSYPPYIEPTFYA 217 (274)
T ss_pred HHHHHHHHhhhhccccccccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcc-ccCCCcccCCCCCCCccchHHHH
Confidence 788899999998877654444466678888876655433 356677787776 457999999998655 8899999
Q ss_pred HHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCC-CCCCCCCHHHHHHHhhhhhccC
Q 021308 232 LSSLIMIDRVHWINKDKLVKFILDCQDMENGGISD-RPDDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 232 ~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~-~p~~~~d~~~T~~al~~L~l~~ 288 (314)
+.+|.+|+.. .-..+.++||.+.|| .+|||++ ...+.+.+..||+||+.|+.+.
T Consensus 218 ~r~lelL~~k--~~i~~~~rFI~slqN-~nGGFRRS~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 218 LRGLELLGGK--YCISDHIRFIRSLQN-QNGGFRRSYELGISTFENTYRALASLASLH 272 (274)
T ss_pred HhHHHHHccC--cCchHHHHHHHHhhc-CCCCeeeeEeccccchHHHHHHHHHHHHHh
Confidence 9999999987 334679999999999 7999999 4678899999999999998764
No 25
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.92 E-value=2e-23 Score=206.08 Aligned_cols=260 Identities=19% Similarity=0.134 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHccc-CCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhccC-------------CCC
Q 021308 5 AADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQD-------------ESG 69 (314)
Q Consensus 5 ~~~~~~~yl~~~~~-~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q~-------------~dG 69 (314)
.+.||+++|.+-.. .+|++.... ..+.+|.|.+++.+|...|. .+++..+++.+||+++|. +.|
T Consensus 288 ~~~~~l~~l~~~~~~~~~g~~~~~-~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~G 366 (635)
T TIGR01507 288 FIKLGWEGIDLYGVELDDSWMFQA-CVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPG 366 (635)
T ss_pred HHHHHHHHHHHheEecCCceEecC-CCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCC
Confidence 35679999988654 345543222 24588999999999988883 234467899999999973 468
Q ss_pred cccCC--CCCCCchhhhHHHHHHHHHhcCC----CcccHHHHHHHHHhccCCCCCcccCC------------CC------
Q 021308 70 GFAGN--IGHDPHVLYTLSAVQVLALFDKV----DILDADKVSNYIVGLQNEDGSFSGDI------------WG------ 125 (314)
Q Consensus 70 Gf~~~--~~~~~~~~~T~~al~~L~~l~~~----~~~~~~~~~~~l~~~Q~~dGgf~~~~------------~~------ 125 (314)
||+.. +...|++..|..++.+|..++.. ....++++++||.++|++||||.... .+
T Consensus 367 GW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~ 446 (635)
T TIGR01507 367 GWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVT 446 (635)
T ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCcccccccc
Confidence 88876 34468999999999999887421 12357899999999999999996421 11
Q ss_pred -CcccchHHHHHHHHHHhCC-CCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC-CcCCHHHHH
Q 021308 126 -EVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLG 202 (314)
Q Consensus 126 -~~d~~~ty~al~~l~ll~~-~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~ 202 (314)
.+++.-|-.++.+|...+. .....++++++||++.|++||||-..-+ ......|..++.+|...|.. ....+++++
T Consensus 447 D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv 525 (635)
T TIGR01507 447 DPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKAL 525 (635)
T ss_pred CCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 1233335556666666553 2234678999999999999999832222 23444577777777776643 233478999
Q ss_pred HHHHccCcCCCcccCCC----------CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCC
Q 021308 203 WWLCERQVKSGGLNGRP----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDR 267 (314)
Q Consensus 203 ~~L~~~Q~~~GGf~~~~----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~ 267 (314)
+||+++|++||||.... ...+|+..|.|++.+|...+..+....++.++||.++|+ ++|||...
T Consensus 526 ~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~-~dG~W~e~ 599 (635)
T TIGR01507 526 AWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQR-PDGGWDEP 599 (635)
T ss_pred HHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC-CCCCCCCc
Confidence 99999999999997431 125788899999999999886543447899999999999 79999873
No 26
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.92 E-value=4.2e-24 Score=211.02 Aligned_cols=213 Identities=23% Similarity=0.274 Sum_probs=163.7
Q ss_pred HHHHHHHHHHccc--------------CCCCccccccc--cchhHHHHHHHHHHHhcC---CC-----CccCHHHHHHHH
Q 021308 6 ADKHVKYIISVEK--------------KKDSFESVVME--HLRLNGAYWGLTTLDILG---KL-----DAVDEEDVISWI 61 (314)
Q Consensus 6 ~~~~~~yl~~~~~--------------~~g~~~~~~~~--~~~~~~~~~al~~L~lLg---~~-----~~~~~~~~~~~l 61 (314)
.+|+.+||.++|. ++|||.+...+ ..+.-.|--+|.+|..+. .. ..+..+++++||
T Consensus 330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~L 409 (634)
T TIGR03463 330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFI 409 (634)
T ss_pred HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHH
Confidence 3689999999984 57888775422 122333555666665533 11 123467899999
Q ss_pred HhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCCCc--------ccHHHHHHHHHhc
Q 021308 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI--------LDADKVSNYIVGL 112 (314)
Q Consensus 62 ~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~--------~~~~~~~~~l~~~ 112 (314)
+++||+||||+.+.. ..+++..|..+|.+|..++.... ..++++++||.+.
T Consensus 410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 999999999995432 24678899999999998864221 1367899999999
Q ss_pred cCCCCCcccCCCCCcccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCCCCCCCCC----------CCCccchhhhH
Q 021308 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIF 181 (314)
Q Consensus 113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGf~~~----------p~~~s~~~~T~ 181 (314)
|++||+|.+. ++....+.|++++.+|..+|.. ....++++++||+++|++||||+.. ++.+|+...|+
T Consensus 490 Q~~dGsW~g~-Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA 568 (634)
T TIGR03463 490 QREDGSFPGS-WGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTS 568 (634)
T ss_pred cCCCCCcccc-CCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHH
Confidence 9999999764 3455677899999999988863 4466899999999999999999753 34568899999
Q ss_pred HHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCC
Q 021308 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP 219 (314)
Q Consensus 182 ~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~ 219 (314)
||+.+|...|..+...++++++||+++|.+||||...+
T Consensus 569 ~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 569 WALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 99999999887665668999999999999999997644
No 27
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.92 E-value=2.3e-23 Score=205.88 Aligned_cols=260 Identities=17% Similarity=0.153 Sum_probs=188.9
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchhHHHHHHHHHHHhcCCCC---ccCHHHHHHHHHhccC--------------
Q 021308 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQD-------------- 66 (314)
Q Consensus 6 ~~~~~~yl~~~~~--~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~---~~~~~~~~~~l~~~q~-------------- 66 (314)
.++|+++|.+..- ++|+...... .+..|.|-+++.+|.-.|..+ ....+++.+||+++|.
T Consensus 278 ~~k~l~~l~~~~~~~~~~g~~~q~~-~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 278 VAAHLEGLEDYRYEDDDRGLRYNGY-NSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHhhEEEcCCCCEEEeeC-CCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 5799999999773 5533211111 234488888888887666321 1346899999999994
Q ss_pred CCCcccCCC--CCCCchhhhHHHHHHHHHhcCC--------CcccHHHHHHHHHhccCCCCCcccCCC------------
Q 021308 67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDIW------------ 124 (314)
Q Consensus 67 ~dGGf~~~~--~~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~Q~~dGgf~~~~~------------ 124 (314)
+.|||+... ...|+...|..++.+|..+... +....+++++||.++|++||||+....
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 569998874 4568888999999988775421 112367899999999999999983211
Q ss_pred ---------CCcccchHHHHHHHHHHhCCCCc--------cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHH
Q 021308 125 ---------GEVDTRFSYIAICCLSILQRLDK--------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (314)
Q Consensus 125 ---------~~~d~~~ty~al~~l~ll~~~~~--------~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L 187 (314)
..+.+..|..++.+|..++.... ..++++++||++.|++||||...-+ ......|++++.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence 12344456667777776654221 2468899999999999999865422 23444689999999
Q ss_pred HHhhcC-CcCCHHHHHHHHHccCcCCCcccCCC----------CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhh
Q 021308 188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDC 256 (314)
Q Consensus 188 ~ll~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~~----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~ 256 (314)
..+|.. +...++++++||+++|++||||..+. +..++...|.|++.+|...+..+-...++.++||.+.
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSR 595 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 888763 33458999999999999999997632 3356788999999999998865434578899999999
Q ss_pred cCCCCCCcCCCC
Q 021308 257 QDMENGGISDRP 268 (314)
Q Consensus 257 Q~~~~GGf~~~p 268 (314)
|+ ++|||...+
T Consensus 596 Q~-~dG~W~~~~ 606 (634)
T TIGR03463 596 QQ-EDGRWPREP 606 (634)
T ss_pred CC-CCCCCCCCc
Confidence 99 799998744
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=3.8e-23 Score=192.15 Aligned_cols=230 Identities=20% Similarity=0.199 Sum_probs=175.0
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC--CCcccHHHHHHHHHhcc--------------CCCCC
Q 021308 55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK--VDILDADKVSNYIVGLQ--------------NEDGS 118 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q--------------~~dGg 118 (314)
++.++||.+.|++||||+..+ +++..|..++.+|...+. .....++++++||.+.| .++|+
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 578999999999999998765 889999999999998875 23335789999999999 68899
Q ss_pred cccCCC--CCcccchHHHHHHHHHHhCCCC-------ccCHHHHHHHHHhccCCCCCCCCC-CC----------------
Q 021308 119 FSGDIW--GEVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCT-PG---------------- 172 (314)
Q Consensus 119 f~~~~~--~~~d~~~ty~al~~l~ll~~~~-------~~~~~~~~~~l~~~q~~dGGf~~~-p~---------------- 172 (314)
|..... +..+...|..++.+|..++... ...++++++||+++|++||||... +.
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI 158 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence 876432 2344445666666666665432 235688999999999999999743 21
Q ss_pred --CccchhhhHHHHHHHHHhhcCCc-------CCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcc
Q 021308 173 --GESHSGQIFCCVGALAIAGALHH-------VDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243 (314)
Q Consensus 173 --~~s~~~~T~~al~~L~ll~~~~~-------~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~ 243 (314)
..++...|..++.+|..++.... ..++++++||.+.|.++|||.++.+. ...+.|.+++.+|..++....
T Consensus 159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~-~~~y~ta~a~~aL~~~g~~~~ 237 (348)
T cd02889 159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWGV-CFIYGTWFALEALAAAGEDEN 237 (348)
T ss_pred ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCCC-cchHHHHHHHHHHHHcCCCcC
Confidence 23456678899999988876432 23678999999999999999765432 345667788888888775321
Q ss_pred -cChHHHHHHHHhhcCCCCCCcCCC----------CCCCCCHHHHHHHhhhhhccCC
Q 021308 244 -INKDKLVKFILDCQDMENGGISDR----------PDDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 244 -~~~~~~~~~l~~~Q~~~~GGf~~~----------p~~~~d~~~T~~al~~L~l~~~ 289 (314)
...+++++||.+||+ ++|||... ++..+++..|+++|.+|...+.
T Consensus 238 ~~~~~~~~~~L~~~Q~-~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~ 293 (348)
T cd02889 238 SPYVRKACDWLLSKQN-PDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGE 293 (348)
T ss_pred cHHHHHHHHHHHHccC-CCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCC
Confidence 235789999999999 79999752 3456899999999999988765
No 29
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.91 E-value=9.3e-23 Score=202.80 Aligned_cols=259 Identities=17% Similarity=0.171 Sum_probs=193.7
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchhHHHHHHHHHHHhcCCC--CccCHHHHHHHHHhccC--------------C
Q 021308 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--------------E 67 (314)
Q Consensus 6 ~~~~~~yl~~~~--~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~--~~~~~~~~~~~l~~~q~--------------~ 67 (314)
.++|+++|.+-. .+||.... ....+.+|.|-+++.+|.-.|.. .....+++++||.++|. +
T Consensus 280 ~~~~l~~l~~~~~~~~~g~~~~-~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~ 358 (634)
T cd02892 280 FKRHLERIDDFLWLGPEGMKMC-QTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR 358 (634)
T ss_pred HHHHHHHHHhcEEEecCCcEEE-cCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence 468899998865 56776532 23356789999999999877743 33457899999999995 4
Q ss_pred CCcccCC--CCCCCchhhhHHHHHHHHHhcCCC-------cccHHHHHHHHHhccCCCCCcccC-CCC------------
Q 021308 68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGD-IWG------------ 125 (314)
Q Consensus 68 dGGf~~~--~~~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~-~~~------------ 125 (314)
.|||+.. +...|++..|..++.+|..++... ...++++++||.++|++||||... +..
T Consensus 359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e 438 (634)
T cd02892 359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE 438 (634)
T ss_pred CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence 6788764 234578889999999998886432 123678999999999999999731 110
Q ss_pred --------CcccchHHHHHHHHHHhCCCCc-------cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHh
Q 021308 126 --------EVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (314)
Q Consensus 126 --------~~d~~~ty~al~~l~ll~~~~~-------~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll 190 (314)
.+.+..|..++.+|..++.... ..++++++||+++|++||||...-+ ......|++++.+|..+
T Consensus 439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~ 517 (634)
T cd02892 439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAA 517 (634)
T ss_pred hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHh
Confidence 1234457888888888875322 2578999999999999999964422 34555688888888888
Q ss_pred hcC--CcCCHHHHHHHHHccCcCCCcccCCC----------CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcC
Q 021308 191 GAL--HHVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQD 258 (314)
Q Consensus 191 ~~~--~~~~~~~~~~~L~~~Q~~~GGf~~~~----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~ 258 (314)
|.. ....++++++||+++|++||||...+ ...+++..|.|++.+|...+..+....+++++||.++|+
T Consensus 518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~ 597 (634)
T cd02892 518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQL 597 (634)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCC
Confidence 754 23457899999999999999997532 234668889999999988876544457889999999999
Q ss_pred CCCCCcCCC
Q 021308 259 MENGGISDR 267 (314)
Q Consensus 259 ~~~GGf~~~ 267 (314)
.+|||...
T Consensus 598 -~~G~w~~~ 605 (634)
T cd02892 598 -PDGDWPQE 605 (634)
T ss_pred -CCCCCCCc
Confidence 79999873
No 30
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.91 E-value=2.7e-22 Score=198.04 Aligned_cols=276 Identities=16% Similarity=0.092 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC-CCccCHHHHHHHHHhcc-CCCCcccCCCCCCCchhh
Q 021308 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY 83 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~~~~~~~l~~~q-~~dGGf~~~~~~~~~~~~ 83 (314)
.+++++||+.+|.++|+|... .+ .++++|.+|..+|. .+++.+++++++|.+.. ..+||+.-.+. .+.++.
T Consensus 246 ~~~a~~~i~~~~e~~g~~~~i--~p----~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~-~s~vWD 318 (635)
T TIGR01507 246 EIRALDWLLERQAGDGSWGGI--QP----AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQAC-VSPVWD 318 (635)
T ss_pred HHHHHHHHHHHHcCCCceeec--ch----HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEecCC-CCcHHH
Confidence 578999999999999988432 11 47889999999985 44566888999997754 34566543332 577999
Q ss_pred hHHHHHHHHHhcC-CCcccHHHHHHHHHhccC-------------CCCCcccC--CCCCcccchHHHHHHHHHHhCCCC-
Q 021308 84 TLSAVQVLALFDK-VDILDADKVSNYIVGLQN-------------EDGSFSGD--IWGEVDTRFSYIAICCLSILQRLD- 146 (314)
Q Consensus 84 T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~-------------~dGgf~~~--~~~~~d~~~ty~al~~l~ll~~~~- 146 (314)
|..++++|...|- .+...+.++.+||.++|. +.|||+.. +.+-+|+.-|..++.+|..++...
T Consensus 319 Ta~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~ 398 (635)
T TIGR01507 319 TALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDE 398 (635)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCcc
Confidence 9999999998872 234457899999999983 24777543 334578888888888887765321
Q ss_pred ---ccCHHHHHHHHHhccCCCCCCCCCCC-------------------CccchhhhHHHHHHHHHhhcC-CcCCHHHHHH
Q 021308 147 ---KINVDKAVEYIVSCKNLDGGFGCTPG-------------------GESHSGQIFCCVGALAIAGAL-HHVDKDLLGW 203 (314)
Q Consensus 147 ---~~~~~~~~~~l~~~q~~dGGf~~~p~-------------------~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~~ 203 (314)
...++++++||+++|++||||+.... ..++..-|..++.+|...+.. +...++++++
T Consensus 399 ~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~ 478 (635)
T TIGR01507 399 RRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVE 478 (635)
T ss_pred ccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 24678999999999999999964321 124445577777777776532 1224789999
Q ss_pred HHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcc-cChHHHHHHHHhhcCCCCCCcCCC----------CCCCC
Q 021308 204 WLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW-INKDKLVKFILDCQDMENGGISDR----------PDDAV 272 (314)
Q Consensus 204 ~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~-~~~~~~~~~l~~~Q~~~~GGf~~~----------p~~~~ 272 (314)
||.+.|++||||-++.+ ..+++-|..++.+|...+.... ...+++++||+++|+ ++|||... +...+
T Consensus 479 ~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~-~DGGWge~~~sy~~~~~~g~g~s 556 (635)
T TIGR01507 479 YLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQN-PDGGWGEDCRSYEDPAYAGKGAS 556 (635)
T ss_pred HHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcC-CCCCCCCCCcccccccccCCCCC
Confidence 99999999999966654 2345566677777777664311 125789999999999 79999843 22357
Q ss_pred CHHHHHHHhhhhhccCCC
Q 021308 273 DVFHTYFGVAGLSLLEYP 290 (314)
Q Consensus 273 d~~~T~~al~~L~l~~~~ 290 (314)
++..|+++|.+|...++.
T Consensus 557 ~~s~TA~AL~AL~~ag~~ 574 (635)
T TIGR01507 557 TASQTAWALIALIAAGRA 574 (635)
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 899999999999988764
No 31
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.91 E-value=2.6e-22 Score=199.66 Aligned_cols=276 Identities=19% Similarity=0.156 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhcc--CCCCcccCCCCCCCchhh
Q 021308 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ--DESGGFAGNIGHDPHVLY 83 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q--~~dGGf~~~~~~~~~~~~ 83 (314)
.+++++||...|.++|+++. .+ +. +.+++.+|..+|..++...+++++.|.+.. .+||++...+. .+.++.
T Consensus 238 ~~~~~~~i~~~q~~~g~~~~---~~--~~-~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~-~s~~wD 310 (634)
T cd02892 238 LRKAYEWILYRDENTGYLGI---IP--PP-KANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTN-GSQVWD 310 (634)
T ss_pred HHHHHHHHHHHhcCCCceee---ee--hH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCC-CCchHH
Confidence 47889999999999999853 12 22 344555566667644556888888888754 56888755432 456999
Q ss_pred hHHHHHHHHHhcCC--CcccHHHHHHHHHhccC--------------CCCCcccC--CCCCcccchHHHHHHHHHHhCCC
Q 021308 84 TLSAVQVLALFDKV--DILDADKVSNYIVGLQN--------------EDGSFSGD--IWGEVDTRFSYIAICCLSILQRL 145 (314)
Q Consensus 84 T~~al~~L~~l~~~--~~~~~~~~~~~l~~~Q~--------------~dGgf~~~--~~~~~d~~~ty~al~~l~ll~~~ 145 (314)
|..++++|...+.. ....++++++||.+.|. +.|||+.. +.+.+|+.-|..++.+|..++..
T Consensus 311 Tala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~ 390 (634)
T cd02892 311 TALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQEL 390 (634)
T ss_pred HHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhcc
Confidence 99999999887632 23357899999999995 34666533 22335566677777777767643
Q ss_pred C-------ccCHHHHHHHHHhccCCCCCCCCC-CC--------------------CccchhhhHHHHHHHHHhhcCCcC-
Q 021308 146 D-------KINVDKAVEYIVSCKNLDGGFGCT-PG--------------------GESHSGQIFCCVGALAIAGALHHV- 196 (314)
Q Consensus 146 ~-------~~~~~~~~~~l~~~q~~dGGf~~~-p~--------------------~~s~~~~T~~al~~L~ll~~~~~~- 196 (314)
. ...++++++||+++|++||||+.. +. ..+++..|..++.+|..++.....
T Consensus 391 ~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~ 470 (634)
T cd02892 391 PPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGH 470 (634)
T ss_pred CCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcch
Confidence 2 235678999999999999999732 21 124556789999999988765332
Q ss_pred ------CHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC-cc-cChHHHHHHHHhhcCCCCCCcCCC-
Q 021308 197 ------DKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV-HW-INKDKLVKFILDCQDMENGGISDR- 267 (314)
Q Consensus 197 ------~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~-~~-~~~~~~~~~l~~~Q~~~~GGf~~~- 267 (314)
.++++++||.+.|.+||||-++.+. ..++.|++++.+|..++.. .. ...+++++||+++|+ ++|||...
T Consensus 471 r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~-~DGgWge~~ 548 (634)
T cd02892 471 RREIDPAIRRAVKYLLREQEPDGSWYGRWGV-CYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQN-PDGGWGESY 548 (634)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCccccCCC-ccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCC-CCCCCCCcc
Confidence 3788999999999999999776532 3455677888888888754 22 346789999999999 79999753
Q ss_pred ---------CCCCCCHHHHHHHhhhhhccCCC
Q 021308 268 ---------PDDAVDVFHTYFGVAGLSLLEYP 290 (314)
Q Consensus 268 ---------p~~~~d~~~T~~al~~L~l~~~~ 290 (314)
++..+++..|++||.+|...++.
T Consensus 549 ~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 549 LSYEDKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred ccccCcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 23457899999999999887763
No 32
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.90 E-value=3.5e-22 Score=197.18 Aligned_cols=258 Identities=20% Similarity=0.181 Sum_probs=187.0
Q ss_pred HHHHHHHHHHc--ccCCCCccccccccchhHHHHHHHHHHHhcCC----CCccCHHHHHHHHHhccCCC-----------
Q 021308 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK----LDAVDEEDVISWILKCQDES----------- 68 (314)
Q Consensus 6 ~~~~~~yl~~~--~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~----~~~~~~~~~~~~l~~~q~~d----------- 68 (314)
..+|++.|.+. ..+||.+.-. -.+.+|.|-+++.+|...|. ......+++++||+++|..+
T Consensus 269 ~~~~l~~l~~~~~~~~dg~~~q~--~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~ 346 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQLDGMKMQG--TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH 346 (621)
T ss_pred HHHHHHHHhhcEEEeCCccEEec--CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence 46889999886 4577765221 25678999999999976663 12345789999999999865
Q ss_pred ----CcccCCC--CCCCchhhhHHHHHHHHHhcC----CCcccHHHHHHHHHhccCCCCCcccCC-C-------------
Q 021308 69 ----GGFAGNI--GHDPHVLYTLSAVQVLALFDK----VDILDADKVSNYIVGLQNEDGSFSGDI-W------------- 124 (314)
Q Consensus 69 ----GGf~~~~--~~~~~~~~T~~al~~L~~l~~----~~~~~~~~~~~~l~~~Q~~dGgf~~~~-~------------- 124 (314)
|||++.. ...|++..|-.++.++.++.. ......+++++||.+.|++||||+... .
T Consensus 347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e 426 (621)
T TIGR01787 347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE 426 (621)
T ss_pred CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence 7776642 345788888888877655542 122246789999999999999997321 1
Q ss_pred --C-----CcccchHHHHHHHHHHhCCCC---ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCC
Q 021308 125 --G-----EVDTRFSYIAICCLSILQRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (314)
Q Consensus 125 --~-----~~d~~~ty~al~~l~ll~~~~---~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~ 194 (314)
+ .+....|..++.+|...+... ...++++++||+++|++||+|...-+ ......|.+++.+|..+|...
T Consensus 427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~ 505 (621)
T TIGR01787 427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTY 505 (621)
T ss_pred hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcc
Confidence 0 111234667777777665311 24678999999999999999865422 223345778888888887642
Q ss_pred --cCCHHHHHHHHHccCcCCCcccCCCC----------CCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCC
Q 021308 195 --HVDKDLLGWWLCERQVKSGGLNGRPE----------KLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENG 262 (314)
Q Consensus 195 --~~~~~~~~~~L~~~Q~~~GGf~~~~~----------~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~G 262 (314)
...++++++||+++|++||||+.... ..+++..|.|++.+|...+.......++.++||.++|+ ++|
T Consensus 506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~-~dG 584 (621)
T TIGR01787 506 RNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQR-PDG 584 (621)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCC-CCC
Confidence 24478999999999999999975421 24788999999999998886543457899999999999 799
Q ss_pred CcCCC
Q 021308 263 GISDR 267 (314)
Q Consensus 263 Gf~~~ 267 (314)
||...
T Consensus 585 ~w~~~ 589 (621)
T TIGR01787 585 DWPQE 589 (621)
T ss_pred CCCCc
Confidence 99763
No 33
>PLN02993 lupeol synthase
Probab=99.89 E-value=7.4e-22 Score=195.36 Aligned_cols=211 Identities=21% Similarity=0.277 Sum_probs=157.1
Q ss_pred HHHHHHHHHHcccC---------------CCCccccccc--cchhHHHHHHHH---HHHhcCCC------CccCHHHHHH
Q 021308 6 ADKHVKYIISVEKK---------------KDSFESVVME--HLRLNGAYWGLT---TLDILGKL------DAVDEEDVIS 59 (314)
Q Consensus 6 ~~~~~~yl~~~~~~---------------~g~~~~~~~~--~~~~~~~~~al~---~L~lLg~~------~~~~~~~~~~ 59 (314)
.+|+.+||.+.|.. .|+|.|...+ ..+.-+|-=+|. .|..+... ......++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~ 520 (763)
T PLN02993 441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVN 520 (763)
T ss_pred HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHH
Confidence 46888999998762 3777654322 122223333444 33333211 1134678999
Q ss_pred HHHhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCC-C-------cccHHHHHHHHH
Q 021308 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-------ILDADKVSNYIV 110 (314)
Q Consensus 60 ~l~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-------~~~~~~~~~~l~ 110 (314)
||+++||.||||+.+.. .++.+..|..+|.+|..++.. . ...++++++||.
T Consensus 521 wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~ 600 (763)
T PLN02993 521 LLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIE 600 (763)
T ss_pred HHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHH
Confidence 99999999999997642 146788899999999998642 1 124689999999
Q ss_pred hccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCC--ccCHHHHHHHHHhccCCCCCCCCCC------------CCccc
Q 021308 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGESH 176 (314)
Q Consensus 111 ~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGf~~~p------------~~~s~ 176 (314)
+.|++||||.++ ++...++.|++++.+|...|... ...++|+++||+++|++|||||... +..|+
T Consensus 601 ~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St 679 (763)
T PLN02993 601 SKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSN 679 (763)
T ss_pred HhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCc
Confidence 999999999764 55667788999999998888742 2578999999999999999998742 23588
Q ss_pred hhhhHHHHHHHHHhhcCCc--CCHHHHHHHHHccCcCCCcccC
Q 021308 177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 177 ~~~T~~al~~L~ll~~~~~--~~~~~~~~~L~~~Q~~~GGf~~ 217 (314)
+..|.+|+.+|...|..+. ..++++++||.++|.++|+|.-
T Consensus 680 ~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 680 LVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred hhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCC
Confidence 8999999999988886433 3588999999999999999844
No 34
>PLN03012 Camelliol C synthase
Probab=99.88 E-value=6.6e-22 Score=195.32 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=154.4
Q ss_pred HHHHHHHHHHcccC---------------CCCccccccc--cchhHHHHHHHHH---HHhcCC-----C-CccCHHHHHH
Q 021308 6 ADKHVKYIISVEKK---------------KDSFESVVME--HLRLNGAYWGLTT---LDILGK-----L-DAVDEEDVIS 59 (314)
Q Consensus 6 ~~~~~~yl~~~~~~---------------~g~~~~~~~~--~~~~~~~~~al~~---L~lLg~-----~-~~~~~~~~~~ 59 (314)
..|+.+||.+.|.. .|+|.|...+ ..+.-+|-=+|.+ |+++.. . ......++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~ 520 (759)
T PLN03012 441 LRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVN 520 (759)
T ss_pred HHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 46888999998863 2666553321 1122223334443 444431 1 1234678999
Q ss_pred HHHhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCCC--------cccHHHHHHHHH
Q 021308 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD--------ILDADKVSNYIV 110 (314)
Q Consensus 60 ~l~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~--------~~~~~~~~~~l~ 110 (314)
||+++||+||||+.+.. ..+....|..+|.+|.+++... ...++++++||+
T Consensus 521 wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~ 600 (759)
T PLN03012 521 ILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIE 600 (759)
T ss_pred HHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHH
Confidence 99999999999987643 2455667999999998886421 123678999999
Q ss_pred hccCCCCCcccCCCCCcccchHHHHHHHHHHhCCC--CccCHHHHHHHHHhccCCCCCCCCCC------------CCccc
Q 021308 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP------------GGESH 176 (314)
Q Consensus 111 ~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGf~~~p------------~~~s~ 176 (314)
+.|++||||.++. +...++.|++|+.+|...|.. +...++|+++||++.|++||||+..- +..|+
T Consensus 601 ~~Q~~DGsW~G~W-gv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~ 679 (759)
T PLN03012 601 NIQMLDGSWYGNW-GICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISN 679 (759)
T ss_pred HhcCCCCCCcccc-cccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCc
Confidence 9999999998754 334456788889999888863 23578999999999999999999753 23588
Q ss_pred hhhhHHHHHHHHHhhcCCc--CCHHHHHHHHHccCcCCCcccC
Q 021308 177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 177 ~~~T~~al~~L~ll~~~~~--~~~~~~~~~L~~~Q~~~GGf~~ 217 (314)
+..|.||+.+|...|..+. ..++++++||+++|.++|+|.-
T Consensus 680 ~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 680 LVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCC
Confidence 8999999999998886533 3589999999999999999844
No 35
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.88 E-value=9.3e-21 Score=187.13 Aligned_cols=273 Identities=16% Similarity=0.100 Sum_probs=192.0
Q ss_pred cHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhc--cCCCCcccCCCCCCCchh
Q 021308 5 AADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC--QDESGGFAGNIGHDPHVL 82 (314)
Q Consensus 5 ~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~--q~~dGGf~~~~~~~~~~~ 82 (314)
-++++++|+.+++..+|++. +... .+ ++.+|..+|..+++..+++++.|.+. ..+||-+... ..+.++
T Consensus 228 a~~~a~~~~~~~~~~~g~~~-----~i~~--~~-~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~--~~s~vW 297 (621)
T TIGR01787 228 LRKRALQWLYEHIAADGSIG-----PISK--AM-AMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQG--TGSQVW 297 (621)
T ss_pred HHHHHHHHHHHHhccCCCch-----hHhH--HH-HHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEec--CCCcHH
Confidence 47899999999999988763 2222 22 55557777755656789999999875 4567654332 257799
Q ss_pred hhHHHHHHHHHhcC----CCcccHHHHHHHHHhccCCC---------------CCcccC--CCCCcccchHHHHHHHHHH
Q 021308 83 YTLSAVQVLALFDK----VDILDADKVSNYIVGLQNED---------------GSFSGD--IWGEVDTRFSYIAICCLSI 141 (314)
Q Consensus 83 ~T~~al~~L~~l~~----~~~~~~~~~~~~l~~~Q~~d---------------Ggf~~~--~~~~~d~~~ty~al~~l~l 141 (314)
.|..++++|...|. .....+.++++||.+.|..+ |||... ..+-+|+.-|-.++.++.+
T Consensus 298 DTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l 377 (621)
T TIGR01787 298 DTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVL 377 (621)
T ss_pred HHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHH
Confidence 99999999987762 12335789999999999877 555322 1223455555555444434
Q ss_pred hCC----CCccCHHHHHHHHHhccCCCCCCCCCC-C--------------------CccchhhhHHHHHHHHHhhcC-C-
Q 021308 142 LQR----LDKINVDKAVEYIVSCKNLDGGFGCTP-G--------------------GESHSGQIFCCVGALAIAGAL-H- 194 (314)
Q Consensus 142 l~~----~~~~~~~~~~~~l~~~q~~dGGf~~~p-~--------------------~~s~~~~T~~al~~L~ll~~~-~- 194 (314)
+.. .....++++++||+++|++||||+... . ..+....|..++.+|...+.. +
T Consensus 378 ~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~ 457 (621)
T TIGR01787 378 LLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADE 457 (621)
T ss_pred hhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHh
Confidence 432 123456789999999999999998421 1 112334688888888777531 1
Q ss_pred -cCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcc--cChHHHHHHHHhhcCCCCCCcCCCC---
Q 021308 195 -HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW--INKDKLVKFILDCQDMENGGISDRP--- 268 (314)
Q Consensus 195 -~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~--~~~~~~~~~l~~~Q~~~~GGf~~~p--- 268 (314)
...++++++||.+.|.+||+|.++.+. ..++.|.+++.+|..++.... ...+++++||+++|+ ++|||...+
T Consensus 458 ~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~-~DGGWge~~~s~ 535 (621)
T TIGR01787 458 IRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQM-PDGGWGEDCFSY 535 (621)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcC-CCCCCCcCCccc
Confidence 124789999999999999999876542 335557788888888875421 226789999999999 799997532
Q ss_pred -------CCCCCHHHHHHHhhhhhccCC
Q 021308 269 -------DDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 269 -------~~~~d~~~T~~al~~L~l~~~ 289 (314)
...+++..|+|+|.+|...+.
T Consensus 536 ~~~~y~~~~~S~~s~Ta~AL~AL~~ag~ 563 (621)
T TIGR01787 536 EDPSYVGSGGSTPSQTGWALMALIAAGE 563 (621)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHcCc
Confidence 235899999999999987765
No 36
>PLN03012 Camelliol C synthase
Probab=99.86 E-value=3.6e-20 Score=183.10 Aligned_cols=235 Identities=19% Similarity=0.183 Sum_probs=169.8
Q ss_pred cchhHHHHHHHHHHHhcCCC--CccCHHHHHHHHHhccCC---------------CCcccCC--CCCCCchhhhHHHHHH
Q 021308 30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE---------------SGGFAGN--IGHDPHVLYTLSAVQV 90 (314)
Q Consensus 30 ~~~~~~~~~al~~L~lLg~~--~~~~~~~~~~~l~~~q~~---------------dGGf~~~--~~~~~~~~~T~~al~~ 90 (314)
.+.+|.|-+++.+|.--|-. .....+++.+||++.|.. .|||++. ....|....|..++.+
T Consensus 415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka 494 (759)
T PLN03012 415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC 494 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence 55789999999998876632 234578999999999862 2777765 3456888899998876
Q ss_pred HHHhcC--C----Cc---ccHHHHHHHHHhccCCCCCcccCC----------------CCC--cccc---hHHHHHHHHH
Q 021308 91 LALFDK--V----DI---LDADKVSNYIVGLQNEDGSFSGDI----------------WGE--VDTR---FSYIAICCLS 140 (314)
Q Consensus 91 L~~l~~--~----~~---~~~~~~~~~l~~~Q~~dGgf~~~~----------------~~~--~d~~---~ty~al~~l~ 140 (314)
+.++.. . +. ....++++||.+.|++||||+... .+. .|.. -|..++.+|.
T Consensus 495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~ 574 (759)
T PLN03012 495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI 574 (759)
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence 433321 1 11 236789999999999999985311 111 1121 2455667777
Q ss_pred HhCCCC--------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCC--cCCHHHHHHHHHccCc
Q 021308 141 ILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQV 210 (314)
Q Consensus 141 ll~~~~--------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~--~~~~~~~~~~L~~~Q~ 210 (314)
+++... ...++++++||++.|++||||...=+. .....|.+|+.+|..+|... ...++++++||++.|+
T Consensus 575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~ 653 (759)
T PLN03012 575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQK 653 (759)
T ss_pred HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcC
Confidence 765421 234678999999999999999865332 22346788899998888642 2458999999999999
Q ss_pred CCCcccCCCC------------CCCCchhHHHHHHHHHhhccCcc--cChHHHHHHHHhhcCCCCCCcCC
Q 021308 211 KSGGLNGRPE------------KLPDVCYSWWVLSSLIMIDRVHW--INKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 211 ~~GGf~~~~~------------~~~d~~yt~~~~~~L~~l~~~~~--~~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
+||||..... ..+.+..|.||+.+|...+...- ...++.++||.+.|. ++|+|..
T Consensus 654 ~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~-~dG~W~q 722 (759)
T PLN03012 654 DNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQL-ENGDFPQ 722 (759)
T ss_pred CCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHccc-CCCCCCC
Confidence 9999977432 24667899999999999986432 346889999999999 7999876
No 37
>PLN02993 lupeol synthase
Probab=99.85 E-value=4.5e-20 Score=182.74 Aligned_cols=235 Identities=19% Similarity=0.160 Sum_probs=171.6
Q ss_pred cchhHHHHHHHHHHHhcCC--CCccCHHHHHHHHHhccCC---------------CCcccCC--CCCCCchhhhHHHHHH
Q 021308 30 HLRLNGAYWGLTTLDILGK--LDAVDEEDVISWILKCQDE---------------SGGFAGN--IGHDPHVLYTLSAVQV 90 (314)
Q Consensus 30 ~~~~~~~~~al~~L~lLg~--~~~~~~~~~~~~l~~~q~~---------------dGGf~~~--~~~~~~~~~T~~al~~ 90 (314)
.+.+|.|.+++.+|..-|- ......+++.+||++.|.. .|||++. ....|+...|..++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 4578999999999987773 2345688999999998862 3888776 3467889999999886
Q ss_pred HHHhcCC------Cc---ccHHHHHHHHHhccCCCCCcccCC------------CC---------CcccchHHHHHHHHH
Q 021308 91 LALFDKV------DI---LDADKVSNYIVGLQNEDGSFSGDI------------WG---------EVDTRFSYIAICCLS 140 (314)
Q Consensus 91 L~~l~~~------~~---~~~~~~~~~l~~~Q~~dGgf~~~~------------~~---------~~d~~~ty~al~~l~ 140 (314)
+.+|... +. ....++++||.++|++||||+... .. .+.+.-|..++.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 5444321 11 236789999999999999986421 00 122233445666666
Q ss_pred HhCCC-C-------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCc--CCHHHHHHHHHccCc
Q 021308 141 ILQRL-D-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV 210 (314)
Q Consensus 141 ll~~~-~-------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~--~~~~~~~~~L~~~Q~ 210 (314)
+++.. + ...++++++||++.|++||||... ........|++|+.+|..+|.... ..++++++||+++|+
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 66531 1 135689999999999999999754 333455568899999988886522 458999999999999
Q ss_pred CCCcccCCC------------CCCCCchhHHHHHHHHHhhccCcc--cChHHHHHHHHhhcCCCCCCcCC
Q 021308 211 KSGGLNGRP------------EKLPDVCYSWWVLSSLIMIDRVHW--INKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 211 ~~GGf~~~~------------~~~~d~~yt~~~~~~L~~l~~~~~--~~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
+||||+... +..+.+..|.|++.+|...|..+- ...++.++||.+.|+ ++|+|.-
T Consensus 654 ~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~-~~G~W~q 722 (763)
T PLN02993 654 DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQL-ENGDFPQ 722 (763)
T ss_pred CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC-CCCCCCC
Confidence 999997632 124667999999999999886432 236789999999999 7998765
No 38
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.84 E-value=6.4e-21 Score=148.46 Aligned_cols=109 Identities=34% Similarity=0.622 Sum_probs=91.4
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHH--HHHHHhccCCCCCcccCC-CCCcccchHHH
Q 021308 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDI-WGEVDTRFSYI 134 (314)
Q Consensus 58 ~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~Q~~dGgf~~~~-~~~~d~~~ty~ 134 (314)
|+||+++|++||||+.. +..+++..|++|+.+|..++... +++++ ++||.++|++||+|...+ ...+++..|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 77899999999999999998643 47888 999999999999999887 45678999999
Q ss_pred HHHHHHHhCCCCc-cCHHHHHHHHHhccCCCCCCCC
Q 021308 135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC 169 (314)
Q Consensus 135 al~~l~ll~~~~~-~~~~~~~~~l~~~q~~dGGf~~ 169 (314)
++.++.+++.... ..++++++||+++|++||||+.
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999987543 6789999999999999999974
No 39
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.79 E-value=3.5e-19 Score=138.62 Aligned_cols=109 Identities=32% Similarity=0.501 Sum_probs=90.3
Q ss_pred HHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHH--HHHHHccCcCCCcccCCCC-CCCCchhHHH
Q 021308 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL--GWWLCERQVKSGGLNGRPE-KLPDVCYSWW 230 (314)
Q Consensus 154 ~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~--~~~L~~~Q~~~GGf~~~~~-~~~d~~yt~~ 230 (314)
++||+++|++||||+.. +.++++..|++++.+|..++... +.+++ ++||.++|++||||...++ ..+|+.+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 77899999999999999988643 47788 9999999999999999985 4578999999
Q ss_pred HHHHHHhhccCcc-cChHHHHHHHHhhcCCCCCCcCC
Q 021308 231 VLSSLIMIDRVHW-INKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 231 ~~~~L~~l~~~~~-~~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
++++|.+++.... ...+++++||++||+ ++|||++
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~-~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQN-PDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB--TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcC-CCCCCCc
Confidence 9999999997643 446889999999999 7999974
No 40
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.75 E-value=9.3e-17 Score=146.05 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=151.4
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCC--------
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI-------- 75 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~-------- 75 (314)
++.++.+.+.|++||+|..|...+..+|.|.|++.+|....+. +....+++++||.+.|++||+|....
T Consensus 55 ~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~ 134 (297)
T cd02896 55 RQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMT 134 (297)
T ss_pred HHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhcc
Confidence 4555566677899999998877788999999999999988743 23357889999999999999998532
Q ss_pred -C---CCCchhhhHHHHHHHHHhcCCC-------cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCC
Q 021308 76 -G---HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR 144 (314)
Q Consensus 76 -~---~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~ 144 (314)
+ .++++..|.+++.+|...+... ...++++++||.+.+.+ ..+++.+..+..+|++.+.
T Consensus 135 gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~ 204 (297)
T cd02896 135 GGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADS 204 (297)
T ss_pred CCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCC
Confidence 1 1367888999999998876421 22568899999997754 1234444444455666664
Q ss_pred CCccCHHHHHHHHHhccCCCCCCCCC---------C--CCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCC
Q 021308 145 LDKINVDKAVEYIVSCKNLDGGFGCT---------P--GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213 (314)
Q Consensus 145 ~~~~~~~~~~~~l~~~q~~dGGf~~~---------p--~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~G 213 (314)
. ..+++.++|+++++.|||++.. + ....+...|.+|+-++...+ +.....+.++||.++|+..|
T Consensus 205 ~---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~--~~~~a~~iv~WL~~qr~~~G 279 (297)
T cd02896 205 P---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG--DIEYANPIARWLTEQRNYGG 279 (297)
T ss_pred h---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCCC
Confidence 2 6788999999999999998742 1 11236778989887665554 34457789999999999999
Q ss_pred cccCCCCCCCCchhHHHHHHHHH
Q 021308 214 GLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 214 Gf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
||.. +--|..++.+|.
T Consensus 280 gf~s-------TQdTvval~AL~ 295 (297)
T cd02896 280 GFGS-------TQDTVVALQALA 295 (297)
T ss_pred Ceeh-------HHHHHHHHHHHh
Confidence 9975 244555666554
No 41
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.74 E-value=4.6e-16 Score=141.28 Aligned_cols=229 Identities=14% Similarity=0.119 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHH-------hccCCCCcccCCCCC--CCchhhhHHHHHHHHHhcCC---CcccHH
Q 021308 36 AYWGLTTLDILGKLDAVDEEDVISWIL-------KCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKV---DILDAD 103 (314)
Q Consensus 36 ~~~al~~L~lLg~~~~~~~~~~~~~l~-------~~q~~dGGf~~~~~~--~~~~~~T~~al~~L~~l~~~---~~~~~~ 103 (314)
..+++.-|...+..++..++++.+||. ++|++||+|+.+... .++++.|.+++.+|...... +...++
T Consensus 26 ~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ 105 (292)
T cd02897 26 NIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQ 105 (292)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHH
Confidence 444445555545444444556666655 689999999877543 78899999999999887642 233478
Q ss_pred HHHHHHHhccCCCCCcccC-CC-------C-CcccchHHHHHHHHHHhCCCC-ccCHHHHHHHHHhccCCCCCCCCCCCC
Q 021308 104 KVSNYIVGLQNEDGSFSGD-IW-------G-EVDTRFSYIAICCLSILQRLD-KINVDKAVEYIVSCKNLDGGFGCTPGG 173 (314)
Q Consensus 104 ~~~~~l~~~Q~~dGgf~~~-~~-------~-~~d~~~ty~al~~l~ll~~~~-~~~~~~~~~~l~~~q~~dGGf~~~p~~ 173 (314)
++++||.+.|++||+|... +. + ..++..|..++.+|...|... ...++++++||.+.+..
T Consensus 106 ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~---------- 175 (292)
T cd02897 106 QALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS---------- 175 (292)
T ss_pred HHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------
Confidence 9999999999999999742 10 1 123445666777777666532 34578999999998764
Q ss_pred ccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHH---ccCcCCCcccCC----------C-CCCCCchhHHHHHHHHHhhc
Q 021308 174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC---ERQVKSGGLNGR----------P-EKLPDVCYSWWVLSSLIMID 239 (314)
Q Consensus 174 ~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~---~~Q~~~GGf~~~----------~-~~~~d~~yt~~~~~~L~~l~ 239 (314)
..+...+..+..+|.+++. ...++++++|. .++...|+|... + ...+|+.-|-|++.+|...+
T Consensus 176 ~~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~ 252 (292)
T cd02897 176 ISDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAG 252 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcC
Confidence 1233445566666777662 22445555444 344445666531 1 23467888989988887776
Q ss_pred cCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhh
Q 021308 240 RVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285 (314)
Q Consensus 240 ~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~ 285 (314)
........+.++||.++|+ .+|||.. ...|..||.+|+
T Consensus 253 ~~~~~~~~~~v~WL~~~q~-~~Ggf~s-------TQdt~~al~AL~ 290 (292)
T cd02897 253 GEDLAEALPIVKWLAKQRN-SLGGFSS-------TQDTVVALQALA 290 (292)
T ss_pred CccHhHHHHHHHHHHHcCC-CCCCccc-------HHHHHHHHHHHH
Confidence 4222335678889999999 7999985 678999998886
No 42
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.74 E-value=2e-16 Score=143.93 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=152.0
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcc---cHHHHHHHHHhccCCCCCcccCC-------
Q 021308 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGDI------- 123 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~Q~~dGgf~~~~------- 123 (314)
.++.++.++++|++||||+.+....++.+.|.+++.+|........+ .++++++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 45667778889999999998877788999999999999988643223 36789999999999999997531
Q ss_pred -CC----CcccchHHHHHHHHHHhCCCC-------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhh
Q 021308 124 -WG----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (314)
Q Consensus 124 -~~----~~d~~~ty~al~~l~ll~~~~-------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~ 191 (314)
++ ++++..|..++.+|...+... ...++++++||.+++.. ..+...+..+..+|++.+
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence 11 135555666666666555421 23568999999998754 112222333444556555
Q ss_pred cCCcCCHHHHHHHHHccCcCCCcccCC-----------CCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCC
Q 021308 192 ALHHVDKDLLGWWLCERQVKSGGLNGR-----------PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDME 260 (314)
Q Consensus 192 ~~~~~~~~~~~~~L~~~Q~~~GGf~~~-----------~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~ 260 (314)
.. ..+++.+||.+.|+.+||+... .+...++.-|-|++-++-..+.. .....+++||.+-|+ .
T Consensus 204 ~~---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~-~ 277 (297)
T cd02896 204 SP---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRN-Y 277 (297)
T ss_pred Ch---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCC-C
Confidence 32 5678999999999999988642 11234788999998887777643 356789999999998 7
Q ss_pred CCCcCCCCCCCCCHHHHHHHhhhhh
Q 021308 261 NGGISDRPDDAVDVFHTYFGVAGLS 285 (314)
Q Consensus 261 ~GGf~~~p~~~~d~~~T~~al~~L~ 285 (314)
.|||.. ...|..||-+|+
T Consensus 278 ~Ggf~s-------TQdTvval~AL~ 295 (297)
T cd02896 278 GGGFGS-------TQDTVVALQALA 295 (297)
T ss_pred CCCeeh-------HHHHHHHHHHHh
Confidence 899985 678999998886
No 43
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.73 E-value=5e-16 Score=141.05 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=147.5
Q ss_pred HHHHHHHHHH-------cccCCCCccccccc--cchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccC
Q 021308 6 ADKHVKYIIS-------VEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAG 73 (314)
Q Consensus 6 ~~~~~~yl~~-------~~~~~g~~~~~~~~--~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~ 73 (314)
++++++||.. .|++||+|..+... +..+|.|.+++.+|...... +....+++++||.+.|++||||..
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3567777774 78999999887543 67899999999999988742 223578999999999999999985
Q ss_pred CC---------CCCCchhhhHHHHHHHHHhcCC-CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhC
Q 021308 74 NI---------GHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 74 ~~---------~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~ 143 (314)
.. +..+.+..|.+++.+|...+.. ....++++++||.+.+.+ ..++..+..++.+|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG 193 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence 31 1235567899999999888743 233478999999997754 124555555666777777
Q ss_pred CCCccCHHHHHHHHHh---ccCCCCCCCCCC-----------CCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC
Q 021308 144 RLDKINVDKAVEYIVS---CKNLDGGFGCTP-----------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (314)
Q Consensus 144 ~~~~~~~~~~~~~l~~---~q~~dGGf~~~p-----------~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q 209 (314)
. ...+++++++.. .++.+|+|+..| +..++...|.+++.+|...+..+.....+.++||.++|
T Consensus 194 ~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 S---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR 270 (292)
T ss_pred C---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence 3 234455555543 445567776421 22357778888887776655323344677889999999
Q ss_pred cCCCcccCCCCCCCCchhHHHHHHHHH
Q 021308 210 VKSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 210 ~~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
+.+|||... --|.+++.+|.
T Consensus 271 ~~~Ggf~sT-------Qdt~~al~AL~ 290 (292)
T cd02897 271 NSLGGFSST-------QDTVVALQALA 290 (292)
T ss_pred CCCCCcccH-------HHHHHHHHHHH
Confidence 999999653 45667776664
No 44
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.73 E-value=1.2e-16 Score=132.91 Aligned_cols=215 Identities=19% Similarity=0.207 Sum_probs=158.0
Q ss_pred ccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccc
Q 021308 51 AVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTR 130 (314)
Q Consensus 51 ~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~ 130 (314)
.++.+++++||..+|+.||||+...+-+..+..||+||.++..||. +.+.+++.++||.++-+..| .
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~-evPr~EktiefL~d~~qt~~------------~ 71 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH-EVPRKEKTIEFLYDQMQTAG------------V 71 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC-cCchHHHHHHHHHHHHHHhh------------h
Confidence 4578999999999999999999988766668999999999999996 45568999999998433322 2
Q ss_pred hHHHHHHHHHHhCCCCccCHHHH-HHHHHhc------cCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHH
Q 021308 131 FSYIAICCLSILQRLDKINVDKA-VEYIVSC------KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGW 203 (314)
Q Consensus 131 ~ty~al~~l~ll~~~~~~~~~~~-~~~l~~~------q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~ 203 (314)
..++++..|.++|.. +.+.++. ..+++-. --.+||-.. .+.......|||...+|.+.+.. ..+....
T Consensus 72 ~~a~~~~~l~~lg~~-d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~-f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~ 146 (274)
T COG1689 72 GVAMAIEFLRILGAK-DLARNKMLLLFLKYNPLEEKFAVGLGGSEE-FGTATPLEATYWMMSALNMVNYE---YLEEMKE 146 (274)
T ss_pred HHHHHHHHHHHhccc-ccchhhHHHHHhhcCchhHHHhhhcCceee-cCCCchHHHHHHHHHHHHHhCcC---chHHHHH
Confidence 355677888888863 2333322 1222111 112454433 23334567899999888887643 2566778
Q ss_pred HHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCC-CHHHHHHHhh
Q 021308 204 WLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAV-DVFHTYFGVA 282 (314)
Q Consensus 204 ~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~-d~~~T~~al~ 282 (314)
|+.+-|+++|++.+..-+.+++..||.++-+|...+. ++.+.+|-++|-+ .|||...|++.| -+..||||+.
T Consensus 147 ~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe~~c~~--~Ggf~~~P~syPPYiE~t~ya~r 219 (274)
T COG1689 147 KVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFELCCGD--WGGFTEVPNSYPPYIEPTFYALR 219 (274)
T ss_pred HHHHHhhhhccccccccCCcchHHHHHHHHhhccccc-----hHHHHhHHhcccc--CCCcccCCCCCCCccchHHHHHh
Confidence 8888888888877766667888899888888777653 4667788777775 899999999875 5889999999
Q ss_pred hhhccCCC
Q 021308 283 GLSLLEYP 290 (314)
Q Consensus 283 ~L~l~~~~ 290 (314)
+|.+++..
T Consensus 220 ~lelL~~k 227 (274)
T COG1689 220 GLELLGGK 227 (274)
T ss_pred HHHHHccC
Confidence 99999863
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.44 E-value=1.4e-11 Score=111.16 Aligned_cols=211 Identities=18% Similarity=0.143 Sum_probs=133.3
Q ss_pred CHHHHHHHHHhccCCCCcccCCCCC-CCchhhhHHHHHHHHHhcCCCcc---cHHHHHHHHHhccCCCCCcccCCC----
Q 021308 53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGDIW---- 124 (314)
Q Consensus 53 ~~~~~~~~l~~~q~~dGGf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~Q~~dGgf~~~~~---- 124 (314)
.+++++++|.++|++||||+.+++. .++++.|.+++.+|..+.....+ -++++++||.+.|.+||+|.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 3567899999999999999999887 88999999999999877543222 378999999999999999975322
Q ss_pred -----CCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHH
Q 021308 125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD 199 (314)
Q Consensus 125 -----~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~ 199 (314)
...+...|..++.+|...|......+.++++||.+.... ..+.........+|.+.|. ....+
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~ 197 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD 197 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence 123445566677777766654344678999999987643 1112223344445555553 22244
Q ss_pred HHHHHHHccCcCCCcc-------cCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCC
Q 021308 200 LLGWWLCERQVKSGGL-------NGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAV 272 (314)
Q Consensus 200 ~~~~~L~~~Q~~~GGf-------~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~ 272 (314)
+++..+.......++. ....+...+...+.+++.+....+ .....+++++||...+. ..|+|.
T Consensus 198 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~--~~~~~~~~~~~L~~~~~-~~~~~~------- 267 (282)
T cd02891 198 EALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG--DLEEAGPIAKWLAQQRN-SGGGFL------- 267 (282)
T ss_pred HHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCC-CCCCcc-------
Confidence 5555555443322221 111122223344433333332222 12235679999999555 567766
Q ss_pred CHHHHHHHhhhhh
Q 021308 273 DVFHTYFGVAGLS 285 (314)
Q Consensus 273 d~~~T~~al~~L~ 285 (314)
....|.++|.+|+
T Consensus 268 sTq~t~~al~AL~ 280 (282)
T cd02891 268 STQDTVVALQALA 280 (282)
T ss_pred cHHHHHHHHHHHH
Confidence 4678888888875
No 46
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.43 E-value=1.1e-12 Score=125.80 Aligned_cols=181 Identities=26% Similarity=0.300 Sum_probs=133.5
Q ss_pred HHHHHHHHhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCC-C-----cc--cHHHH
Q 021308 55 EDVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-----IL--DADKV 105 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-----~~--~~~~~ 105 (314)
-.+++.|+.+|..+|||....- .++.+..|-.+|++|...... . .+ .++++
T Consensus 515 ~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~a 594 (760)
T KOG0497|consen 515 YDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKA 594 (760)
T ss_pred HHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 3578889999999999986421 135678899999999988642 1 11 36789
Q ss_pred HHHHHhccCCCCCcccCCCCCcccchHHH---HHHHHHHhCCC--CccCHHHHHHHHHhccCCCCCCCCCC---------
Q 021308 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYI---AICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP--------- 171 (314)
Q Consensus 106 ~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~---al~~l~ll~~~--~~~~~~~~~~~l~~~q~~dGGf~~~p--------- 171 (314)
++||++.|.+||||.++. .+++||. ++.++...|.. ....++++++||++.|++|||||..+
T Consensus 595 v~~ie~~Q~~DGSWyGsW----gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi 670 (760)
T KOG0497|consen 595 VEFIEKLQLPDGSWYGSW----GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYI 670 (760)
T ss_pred HHHHHHcCCCCCcccchh----hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCcccccc
Confidence 999999999999997764 3565554 55566666652 24568899999999999999999874
Q ss_pred ---CCccchhhhHHHHHHHHHhhcCC--cCCHHHHHHHHHccCcCCCcccC-----CCCCCCC-chhHHHHHHHHHhhc
Q 021308 172 ---GGESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNG-----RPEKLPD-VCYSWWVLSSLIMID 239 (314)
Q Consensus 172 ---~~~s~~~~T~~al~~L~ll~~~~--~~~~~~~~~~L~~~Q~~~GGf~~-----~~~~~~d-~~yt~~~~~~L~~l~ 239 (314)
+..++...|.+|+.+|...++.+ +.+..+++..|...|.++|-|.- ..++.+- .+.||-.+-++.+|+
T Consensus 671 ~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y~~yr~~F~~waL~ 749 (760)
T KOG0497|consen 671 PLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHYPTYRNIFPIWALG 749 (760)
T ss_pred ccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhccchhhhhccHHHHH
Confidence 23578889999999999988764 44789999999999999998843 2233222 234555555555555
No 47
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.40 E-value=5.7e-11 Score=107.13 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=137.3
Q ss_pred HHHHHHHHHHcccCCCCccccccc-cchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCCC-----
Q 021308 6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG----- 76 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~-~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~~----- 76 (314)
.++.+++|.+.|++||||.++... ..+++.|.|++..|..++.. +....+++++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 467889999999999999988766 77999999999999876532 223478999999999999999976432
Q ss_pred ----CCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHH
Q 021308 77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152 (314)
Q Consensus 77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~ 152 (314)
..+....|.+++.+|...+......+.++++||.+.... ..++........+|.++|. ....++
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~~ 198 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRADE 198 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHHH
Confidence 234556788999999877754344578899999986643 1223334444456666664 233455
Q ss_pred HHHHHHhccCCCCCCC-------CCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCc
Q 021308 153 AVEYIVSCKNLDGGFG-------CTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225 (314)
Q Consensus 153 ~~~~l~~~q~~dGGf~-------~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~ 225 (314)
+++-+.......+... ...+.......| +++.|..+...+.....+++.||.+++...|+|.. +
T Consensus 199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~--a~all~~~~~~~~~~~~~~~~~L~~~~~~~~~~~s-------T 269 (282)
T cd02891 199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEAT--AYALLALLKLGDLEEAGPIAKWLAQQRNSGGGFLS-------T 269 (282)
T ss_pred HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHH--HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCccc-------H
Confidence 5666655543333221 111222222333 33334444322334567899999997777777743 4
Q ss_pred hhHHHHHHHHH
Q 021308 226 CYSWWVLSSLI 236 (314)
Q Consensus 226 ~yt~~~~~~L~ 236 (314)
..|.+++.+|.
T Consensus 270 q~t~~al~AL~ 280 (282)
T cd02891 270 QDTVVALQALA 280 (282)
T ss_pred HHHHHHHHHHH
Confidence 56777776664
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.32 E-value=1.3e-12 Score=100.95 Aligned_cols=105 Identities=23% Similarity=0.346 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhh
Q 021308 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180 (314)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T 180 (314)
++++++||.+.|++||||..... .++..|++++.+|..++.. ....++++++||+++|++||||+..+.. ....|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~--~~~~t 76 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGE--YVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred Ccccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCC--CHHHH
Confidence 35789999999999999976532 5677788888888777652 3456899999999999999999987432 34456
Q ss_pred HHHHHHHHHhhcC-CcCCHHHHHHHHHccCc
Q 021308 181 FCCVGALAIAGAL-HHVDKDLLGWWLCERQV 210 (314)
Q Consensus 181 ~~al~~L~ll~~~-~~~~~~~~~~~L~~~Q~ 210 (314)
..++.+|.+.+.. +...++++++||.+.|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 6667777666543 33458899999999864
No 49
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.31 E-value=2.4e-12 Score=82.55 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhc
Q 021308 196 VDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMID 239 (314)
Q Consensus 196 ~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~ 239 (314)
+|++++++||+++|+++|||+++|++++|++||||++++|++++
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999999999999985
No 50
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.27 E-value=4.6e-12 Score=81.26 Aligned_cols=44 Identities=43% Similarity=0.822 Sum_probs=41.7
Q ss_pred cChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccC
Q 021308 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 244 ~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~ 288 (314)
+|++++++||++||+ ++|||...|++.||++|||+++++|++++
T Consensus 1 id~~~~~~~l~~~Q~-~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQN-PDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBB-TTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCC-CCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 467899999999999 89999999999999999999999999985
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.26 E-value=1.1e-10 Score=103.32 Aligned_cols=206 Identities=19% Similarity=0.199 Sum_probs=129.6
Q ss_pred HHHHHhccCCCCcccCC-CCCCCchhhhHHHHHHHHHhcCCCccc---HHHHHHHHHhccCCCCCcccCCC---CC----
Q 021308 58 ISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---GE---- 126 (314)
Q Consensus 58 ~~~l~~~q~~dGGf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~---~~---- 126 (314)
-+-+++.+++||+|+.+ ...+++.+-|.+++.+|......-.+| +.++++||.+.|++||+|..... ..
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~ 82 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG 82 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence 34577889999999999 667899999999999999887653333 68899999999999999964311 10
Q ss_pred cccchHHHHHHHHHHhCCC---------CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCC
Q 021308 127 VDTRFSYIAICCLSILQRL---------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD 197 (314)
Q Consensus 127 ~d~~~ty~al~~l~ll~~~---------~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~ 197 (314)
.+-..+.+|.+.++++... ....++++++||.+.... . .+ .|+ -||.+.++.-..+...
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~--------~--~~-~Y~-lAl~aYAL~la~~~~~ 150 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN--------I--QD-PYT-LALVAYALALAGDSPQ 150 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC--------T--SS-HHH-HHHHHHHHHHTTTCHH
T ss_pred CCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc--------c--CC-HHH-HHHHHHHHHhhcccch
Confidence 1112334444444444321 123568899999776211 0 11 122 3343344322223455
Q ss_pred HHHHHHHHHccCcCCCcccC---CC-----------CCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCC
Q 021308 198 KDLLGWWLCERQVKSGGLNG---RP-----------EKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGG 263 (314)
Q Consensus 198 ~~~~~~~L~~~Q~~~GGf~~---~~-----------~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GG 263 (314)
.+.+.+-|.+....+|+... .. +...+++-|-|++-++...+. ......+++||.+-|+ ..||
T Consensus 151 ~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~--~~~~~~iv~WL~~qr~-~~Gg 227 (246)
T PF07678_consen 151 ASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGD--LEEASPIVRWLISQRN-SGGG 227 (246)
T ss_dssp HHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHCTT-TTSS
T ss_pred HHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhcC-CCCc
Confidence 67788888887766665422 11 111245666666655444432 2346779999999988 7999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhh
Q 021308 264 ISDRPDDAVDVFHTYFGVAGLS 285 (314)
Q Consensus 264 f~~~p~~~~d~~~T~~al~~L~ 285 (314)
|.. ...|..||-+|+
T Consensus 228 f~S-------TQdTvvaL~AL~ 242 (246)
T PF07678_consen 228 FGS-------TQDTVVALQALA 242 (246)
T ss_dssp TSS-------HHHHHHHHHHHH
T ss_pred cCc-------HHHHHHHHHHHH
Confidence 985 678888888876
No 52
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.26 E-value=1.7e-10 Score=102.15 Aligned_cols=205 Identities=13% Similarity=0.106 Sum_probs=132.9
Q ss_pred HHHHHcccCCCCcccc-ccccchhHHHHHHHHHHHhcCCCCc---cCHHHHHHHHHhccCCCCcccCCCC---------C
Q 021308 11 KYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNIG---------H 77 (314)
Q Consensus 11 ~yl~~~~~~~g~~~~~-~~~~~~~~~~~~al~~L~lLg~~~~---~~~~~~~~~l~~~q~~dGGf~~~~~---------~ 77 (314)
+=+..-+++||+|..+ ...+..+|.|-|++..|....+... ...+++++||.+.|++||.|..... .
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~ 83 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV 83 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence 3456677899999988 6678899999999999999886532 3468899999999999999965321 1
Q ss_pred CCchhhhHHHHHHHHHhcCC-------CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCH
Q 021308 78 DPHVLYTLSAVQVLALFDKV-------DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV 150 (314)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~-------~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~ 150 (314)
...+..|.+.+.+|...+.. ....++++++||++.... ..+.+...-+.-+|.+.+ .....
T Consensus 84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~----------~~~~Y~lAl~aYAL~la~--~~~~~ 151 (246)
T PF07678_consen 84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN----------IQDPYTLALVAYALALAG--DSPQA 151 (246)
T ss_dssp THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC----------TSSHHHHHHHHHHHHHTT--TCHHH
T ss_pred CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc----------cCCHHHHHHHHHHHHhhc--ccchH
Confidence 23566777777777776632 123478999999876211 112222222222344444 34566
Q ss_pred HHHHHHHHhccCCCCCCCCCCCC--------------ccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCccc
Q 021308 151 DKAVEYIVSCKNLDGGFGCTPGG--------------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (314)
Q Consensus 151 ~~~~~~l~~~q~~dGGf~~~p~~--------------~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~ 216 (314)
+++.+-|.+....+|+..+-+.. ..+...|.+|+.+ ++...+.......++||.++|+..|||.
T Consensus 152 ~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa--~l~~~~~~~~~~iv~WL~~qr~~~Ggf~ 229 (246)
T PF07678_consen 152 SKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLA--LLKRGDLEEASPIVRWLISQRNSGGGFG 229 (246)
T ss_dssp HHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHCTTTTSSTS
T ss_pred HHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHhcCCCCccC
Confidence 78888888887777665221111 1245677777644 4444444557789999999999999996
Q ss_pred CCCCCCCCchhHHHHHHHHH
Q 021308 217 GRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 217 ~~~~~~~d~~yt~~~~~~L~ 236 (314)
. +--|..++.+|.
T Consensus 230 S-------TQdTvvaL~AL~ 242 (246)
T PF07678_consen 230 S-------TQDTVVALQALA 242 (246)
T ss_dssp S-------HHHHHHHHHHHH
T ss_pred c-------HHHHHHHHHHHH
Confidence 5 344555666554
No 53
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.23 E-value=8.6e-12 Score=96.28 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC-CcccHHHHHHHHHhccCCCCCcccCCCCCcccchHH
Q 021308 55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty 133 (314)
+++++||++.|++||+|.... ..+...|++++.+|..++.. ....++++++||.++|++||+|...+. .....|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence 578999999999999997653 36688899999999888742 233479999999999999999987632 2233444
Q ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHhccC
Q 021308 134 IAICCLSILQR-LDKINVDKAVEYIVSCKN 162 (314)
Q Consensus 134 ~al~~l~ll~~-~~~~~~~~~~~~l~~~q~ 162 (314)
.++.++.+.+. .....++++++||++.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 45555555443 245568999999999874
No 54
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.20 E-value=7.2e-10 Score=106.88 Aligned_cols=234 Identities=22% Similarity=0.272 Sum_probs=158.5
Q ss_pred chhHHHHHHHHHHHhcCCCC--ccCHHHHHHHHHhccC---C------------CCcccCCCC--CCCchhhhHHHHHHH
Q 021308 31 LRLNGAYWGLTTLDILGKLD--AVDEEDVISWILKCQD---E------------SGGFAGNIG--HDPHVLYTLSAVQVL 91 (314)
Q Consensus 31 ~~~~~~~~al~~L~lLg~~~--~~~~~~~~~~l~~~q~---~------------dGGf~~~~~--~~~~~~~T~~al~~L 91 (314)
+.+|.|-++|..+-.-+..+ ....++.-+||.+.|. + .|||+.+.. ..+-..+|.-++.++
T Consensus 415 sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~ 494 (760)
T KOG0497|consen 415 SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCC 494 (760)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHH
Confidence 57788888888877665332 1235678889998874 2 245554432 233345677777777
Q ss_pred HHhcC------CCcccHHH---HHHHHHhccCCCCCcccC-------------C---CCCc-----ccchHHHHHHHHHH
Q 021308 92 ALFDK------VDILDADK---VSNYIVGLQNEDGSFSGD-------------I---WGEV-----DTRFSYIAICCLSI 141 (314)
Q Consensus 92 ~~l~~------~~~~~~~~---~~~~l~~~Q~~dGgf~~~-------------~---~~~~-----d~~~ty~al~~l~l 141 (314)
.+++. ...+|.++ +++.|..+|..+|||..- | .+.. -+.-|-.++.+|..
T Consensus 495 lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~ 574 (760)
T KOG0497|consen 495 LLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVY 574 (760)
T ss_pred HHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHh
Confidence 66642 24566665 456688999999998531 1 1222 22334456666766
Q ss_pred hCCC-C-------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC--CcCCHHHHHHHHHccCcC
Q 021308 142 LQRL-D-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVK 211 (314)
Q Consensus 142 l~~~-~-------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~--~~~~~~~~~~~L~~~Q~~ 211 (314)
.... + ...+.++++||.+.|.+||+|-..=+. =-...|+.|+.+|...|+. +...++++++||++.|++
T Consensus 575 F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~ 653 (760)
T KOG0497|consen 575 FHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNP 653 (760)
T ss_pred hcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcc
Confidence 6542 1 124678999999999999999655321 1122455777778777764 345688999999999999
Q ss_pred CCcccCCCC------------CCCCchhHHHHHHHHHhhccCc--ccChHHHHHHHHhhcCCCCCCcCC
Q 021308 212 SGGLNGRPE------------KLPDVCYSWWVLSSLIMIDRVH--WINKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 212 ~GGf~~~~~------------~~~d~~yt~~~~~~L~~l~~~~--~~~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
+|||+..+- ..+.+--|.|++++|.+.++.. +.+..++++.|...|. ++|-|.-
T Consensus 654 ~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~-~nGdfpq 721 (760)
T KOG0497|consen 654 DGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQL-ENGDFPQ 721 (760)
T ss_pred cCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhccc-ccCCcch
Confidence 999976432 1456778999999999998764 3467889999999998 7886654
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.95 E-value=1.2e-09 Score=103.91 Aligned_cols=285 Identities=19% Similarity=0.208 Sum_probs=171.4
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCC-c---------------cCHHHHHHHHHhccCCCCc
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-A---------------VDEEDVISWILKCQDESGG 70 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~-~---------------~~~~~~~~~l~~~q~~dGG 70 (314)
+..+.+..+.|+.||++.... +.+...+-+|-.+|..+ . ...+..+.++...|..|||
T Consensus 131 ~~a~l~~~e~Qn~dg~w~g~v------~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~wD~~ 204 (517)
T COG1657 131 KEAELWKLERQNDDGSWRGIV------NAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLLGSQVWDGG 204 (517)
T ss_pred hhhheeeeeecccccccccch------hhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhcccccccccccccccccch
Confidence 346677888899999984322 22333344444444322 1 1123355566677888999
Q ss_pred ccCCCCCCCchhhhH-HHH-HHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCC--CCCcccchHHHHHHHHHHhCCCC
Q 021308 71 FAGNIGHDPHVLYTL-SAV-QVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI--WGEVDTRFSYIAICCLSILQRLD 146 (314)
Q Consensus 71 f~~~~~~~~~~~~T~-~al-~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~--~~~~d~~~ty~al~~l~ll~~~~ 146 (314)
|.......+-+..+. .|+ .++..+-+ -+..+...|-...+..-|+|.... .+.+|...|--++..+.... +
T Consensus 205 f~~~~~~~~g~~~~~~~aiaka~~~L~~---kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~ 279 (517)
T COG1657 205 FIRRALLVAGLAETPIPAIAKALMFLLD---KQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ--S 279 (517)
T ss_pred hhhhhhhhcCccccchHhHHhhhhhhHH---HHHHHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhc--c
Confidence 987654444444444 222 23322221 134445555444555556665433 34556655555555544443 3
Q ss_pred ccCHHHHHHHHHhccCCCCCCCCCCCCc-------------------cchhhhHHHHHHHHHhhcCC----cCCHHHHHH
Q 021308 147 KINVDKAVEYIVSCKNLDGGFGCTPGGE-------------------SHSGQIFCCVGALAIAGALH----HVDKDLLGW 203 (314)
Q Consensus 147 ~~~~~~~~~~l~~~q~~dGGf~~~p~~~-------------------s~~~~T~~al~~L~ll~~~~----~~~~~~~~~ 203 (314)
..+.+..++|+...|+..|||...+..- +-+.-|...+.+|+.++... ..++++++.
T Consensus 280 ~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e 359 (517)
T COG1657 280 LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALE 359 (517)
T ss_pred hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHh
Confidence 5677889999999999999996543211 11222333444454444322 356889999
Q ss_pred HHHccCcCCCcccCCCCCCCCchhHHHHHHHH---HhhccCcc--cChHHHHHHHHhhcCCCCCCcCCCCCCCC------
Q 021308 204 WLCERQVKSGGLNGRPEKLPDVCYSWWVLSSL---IMIDRVHW--INKDKLVKFILDCQDMENGGISDRPDDAV------ 272 (314)
Q Consensus 204 ~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L---~~l~~~~~--~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~------ 272 (314)
||++.|.++|.|-++. .+|++|-...++ .+.+..+. .-.++++.|+..||+ ++|||...-...+
T Consensus 360 ~LL~~Q~~~GsW~g~w----~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~-~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 360 WLLSDQEPDGSWYGRW----GVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQM-PDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred hhhhhccccCceeeEE----EEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccc-cCCCccccccccccccccc
Confidence 9999999999998874 356666554444 44444331 225789999999999 8999997432222
Q ss_pred ----CHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHH
Q 021308 273 ----DVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVN 307 (314)
Q Consensus 273 ----d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~ 307 (314)
=+..|.+++.++-...+++-..++|-++++.+..+
T Consensus 435 t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~ 473 (517)
T COG1657 435 TESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQE 473 (517)
T ss_pred ccchhhcchhHHHHHHHHhcccchhhhcccccccccCcC
Confidence 23456777777777777777778888887765543
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.90 E-value=4.3e-09 Score=100.21 Aligned_cols=198 Identities=19% Similarity=0.144 Sum_probs=129.1
Q ss_pred CCCCcccccc--ccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCC-------------------C
Q 021308 19 KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG-------------------H 77 (314)
Q Consensus 19 ~~g~~~~~~~--~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~-------------------~ 77 (314)
..|+|.++.. ...+... ++....++.+..+.++.++.++|+..+|+..|||...+. .
T Consensus 248 ~~g~W~f~~~~~~ypd~d~--T~~~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 248 SPGGWGFSNINTGYPDADD--TAGVVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred CCCccceeecccCCCCchh--hhHHHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence 4666665443 2223322 344444555544445778899999999999999987642 1
Q ss_pred CCchhhhHHHHHHHHHhcCC-C---cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCC--ccCHH
Q 021308 78 DPHVLYTLSAVQVLALFDKV-D---ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVD 151 (314)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~-~---~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~ 151 (314)
.+.+..|-..+.+|..++.+ + ...++++++||.+.|.++|+|-+.. +..-+..+..++.++++.|... ...+.
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w-~v~~iY~~s~a~~~l~~~g~~~~~~~~v~ 404 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRW-GVCYIYGTSGALSALALVGETDENEVLVR 404 (517)
T ss_pred CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEE-EEEEEEehhhhhhhhhccCccccchHHHH
Confidence 23344444445555555432 2 3568899999999999999996643 2223444555566666666532 23578
Q ss_pred HHHHHHHhccCCCCCCCCCCCCc----------cchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCC
Q 021308 152 KAVEYIVSCKNLDGGFGCTPGGE----------SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP 219 (314)
Q Consensus 152 ~~~~~l~~~q~~dGGf~~~p~~~----------s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~ 219 (314)
+++.|+.++|++||||+..-... +-...|.+++..+....+.+...++..++.+.++|.++|.|...+
T Consensus 405 ~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 405 KLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred HHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccce
Confidence 99999999999999998753221 223356677766666555544457889999999999999887654
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=98.32 E-value=4.4e-05 Score=77.34 Aligned_cols=248 Identities=15% Similarity=0.196 Sum_probs=139.0
Q ss_pred HHHHHHHHcccC--CCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCC--CCCchhh
Q 021308 8 KHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG--HDPHVLY 83 (314)
Q Consensus 8 ~~~~yl~~~~~~--~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~--~~~~~~~ 83 (314)
..++-++++... +|. -...+..|.| |+...-++....+.....++||++.|.+||+||..+. ..-.+.+
T Consensus 76 ~~~~~ir~~l~~~~~g~------~S~S~YDTAW-VAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~ 148 (800)
T PLN02592 76 ERVKTVKSMLSSMEDGE------ISISAYDTAW-VALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLIN 148 (800)
T ss_pred HHHHHHHHHHhcccCCC------cCCcHHHhHH-HhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHh
Confidence 445556665543 332 2345566888 3333334322223566899999999999999987532 1234788
Q ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHhcc-C---CCC-----CcccC---------------CCCCcccchHH------
Q 021308 84 TLSAVQVLALFDKVDILDADKVSNYIVGLQ-N---EDG-----SFSGD---------------IWGEVDTRFSY------ 133 (314)
Q Consensus 84 T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q-~---~dG-----gf~~~---------------~~~~~d~~~ty------ 133 (314)
|.+++.+|..=+. .+..+++++.||.+.- . .+- ||... |....++...+
T Consensus 149 TLAcvlAL~~w~~-~~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~k 227 (800)
T PLN02592 149 TLACVVALKSWNL-HPEKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLK 227 (800)
T ss_pred HHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHH
Confidence 9999998875332 2223577888887533 1 100 22210 00000000000
Q ss_pred --------------HHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHH
Q 021308 134 --------------IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD 199 (314)
Q Consensus 134 --------------~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~ 199 (314)
..+.++..++ ..+.+ =++..|..||+|..+|. .|.+++. .. --+
T Consensus 228 L~r~~~~~~~~~p~~llhslEgl~---~~dw~----~v~~~q~~~GS~~~SPS------aTAaaL~-----~~----~d~ 285 (800)
T PLN02592 228 LTRIPKDIMHKVPTTLLHSLEGMP---GLDWE----KLLKLQCQDGSFLFSPS------STAFALM-----QT----KDE 285 (800)
T ss_pred HhhCchhhhccCcchHHHHHhccc---cCCHH----HHhcccCCCCCccCCch------HHHHHHh-----cc----Cch
Confidence 0000111010 01222 25667889999998886 4444431 11 235
Q ss_pred HHHHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCc-c-cChHHHHHHHHhhcCCCCC-CcCCCCCCCCCHH
Q 021308 200 LLGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVH-W-INKDKLVKFILDCQDMENG-GISDRPDDAVDVF 275 (314)
Q Consensus 200 ~~~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~-~-~~~~~~~~~l~~~Q~~~~G-Gf~~~p~~~~d~~ 275 (314)
++.+||.+....-|| +.|+-. .|...--|.+.+|.-||-.. + ...+.+.++|-++-. ..| ||.. ....+|++
T Consensus 286 ~cl~YL~~~~~k~~G--gVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~-~~g~~~a~-~~~~~Dld 361 (800)
T PLN02592 286 NCLEYLNKAVQRFNG--GVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWT-ENGICWAR-NSHVHDID 361 (800)
T ss_pred HHHHHHHHHHHHcCC--CCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHh-hcCccccc-CCCcCCHH
Confidence 788898776544332 466554 45677779999999998532 1 124567777766533 223 3321 12357999
Q ss_pred HHHHHhhhhhccCC
Q 021308 276 HTYFGVAGLSLLEY 289 (314)
Q Consensus 276 ~T~~al~~L~l~~~ 289 (314)
.|+++...|.+.|+
T Consensus 362 ~TALaFRLLRqhGy 375 (800)
T PLN02592 362 DTAMGFRLLRLHGH 375 (800)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999998
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=98.04 E-value=0.00058 Score=69.54 Aligned_cols=251 Identities=12% Similarity=0.074 Sum_probs=141.2
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCC----CC
Q 021308 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH----DP 79 (314)
Q Consensus 4 l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~----~~ 79 (314)
+..+.+++-|+++.+.-. -...+..|.|....=+. +....+.....++||++.|.+||+||..+.. .-
T Consensus 33 ~~~~~~~~~i~~~l~~~e-------~s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D 104 (784)
T PLN02279 33 VSFEGTKERIKKMFDKVE-------LSVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKD 104 (784)
T ss_pred ccchhHHHHHHHHhccCc-------CCCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence 344667777777665431 12234557786444443 3333345678999999999999999864321 23
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccC----CC----CCcccC-CC-----CC--cccchHHHHHHHH----
Q 021308 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQN----ED----GSFSGD-IW-----GE--VDTRFSYIAICCL---- 139 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~----~d----Ggf~~~-~~-----~~--~d~~~ty~al~~l---- 139 (314)
.+.+|.++|.+|+.=+. .+..+++.+.||.+.-. .+ =||... |. .. .++.+--..+..+
T Consensus 105 ~ll~TlAcvlAL~~w~~-~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r 183 (784)
T PLN02279 105 ALSSTLASILALKKWGV-GEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKR 183 (784)
T ss_pred hhHHHHHHHHHHHHHhc-CcccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHHHhh
Confidence 47889999999876442 12234666677763211 10 113210 00 00 0000000111100
Q ss_pred --HHhC--------C-----------CCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCH
Q 021308 140 --SILQ--------R-----------LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDK 198 (314)
Q Consensus 140 --~ll~--------~-----------~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~ 198 (314)
.+.. . ....+.+ -|+..|..||+|..+|. .|.+++. ... -
T Consensus 184 ~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~----~v~~~q~~~Gs~~~SPs------aTAa~l~-----~~~----~ 244 (784)
T PLN02279 184 DLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWE----MVMKYQRKNGSLFNSPS------TTAAAFS-----HLQ----N 244 (784)
T ss_pred hHHHhhcchhhcCCCcchHHHHHhhccccccHH----HHHhhcCCCCCcccCcH------HHHHHHH-----ccC----C
Confidence 0000 0 0001222 25678999999998875 4444321 111 2
Q ss_pred HHHHHHHHccCcCCCcccCCCCCC-CCchhHHHHHHHHHhhccCccc--ChHHHHHHHHhhcCCCCCCcCCCCCCCCCHH
Q 021308 199 DLLGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIMIDRVHWI--NKDKLVKFILDCQDMENGGISDRPDDAVDVF 275 (314)
Q Consensus 199 ~~~~~~L~~~Q~~~GGf~~~~~~~-~d~~yt~~~~~~L~~l~~~~~~--~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~ 275 (314)
+++.+||.+-+..-|| +.|+-. .|.+..-|.+.+|.-+|-..-+ ..+.+.+.+-++.. .| .++..+|++
T Consensus 245 ~~~~~yL~~~~~~~~g--~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~--~~----~~~~~~Dl~ 316 (784)
T PLN02279 245 AGCLRYLRSLLQKFGN--AVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWL--QG----EEEIFLDLA 316 (784)
T ss_pred hHHHHHHHHHHHhcCC--CCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhc--cc----ccCCCCCHH
Confidence 6788999776655443 566654 4677888999999999853211 23455555554433 22 234457999
Q ss_pred HHHHHhhhhhccCCC
Q 021308 276 HTYFGVAGLSLLEYP 290 (314)
Q Consensus 276 ~T~~al~~L~l~~~~ 290 (314)
.|.++..-|.+.|+.
T Consensus 317 ~tAl~FRLLR~hGy~ 331 (784)
T PLN02279 317 TCALAFRILRLNGYD 331 (784)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999983
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.58 E-value=0.00056 Score=61.26 Aligned_cols=132 Identities=14% Similarity=0.052 Sum_probs=73.6
Q ss_pred cccchHHHHHHHHHHhCCCC-----ccCHHHHHHHHHhccCCCCCCCCC-CCC-ccchhhhH------HHHHHHHHhhcC
Q 021308 127 VDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT-PGG-ESHSGQIF------CCVGALAIAGAL 193 (314)
Q Consensus 127 ~d~~~ty~al~~l~ll~~~~-----~~~~~~~~~~l~~~q~~dGGf~~~-p~~-~s~~~~T~------~al~~L~ll~~~ 193 (314)
.|-..|+..+.-|+-+-..+ ...+.++++||++.|+++|||... |.. .-+..-|| .++-.|..+...
T Consensus 41 iDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 41 IDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 35566777666665542211 235689999999999999999865 311 11111222 233333222111
Q ss_pred -C---c----------CCHHHHHHHHHccCcCCCcccCCCC----------------CCCCc--hhHHHHHHHHHhhccC
Q 021308 194 -H---H----------VDKDLLGWWLCERQVKSGGLNGRPE----------------KLPDV--CYSWWVLSSLIMIDRV 241 (314)
Q Consensus 194 -~---~----------~~~~~~~~~L~~~Q~~~GGf~~~~~----------------~~~d~--~yt~~~~~~L~~l~~~ 241 (314)
. . ..++++++||++.|..+||+.++.+ +++-+ ..|.-++..|--+.+.
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p 200 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNP 200 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCC
Confidence 0 1 1267899999999998887755332 12222 2343343333333322
Q ss_pred c--cc-ChHHHHHHHHhhcC
Q 021308 242 H--WI-NKDKLVKFILDCQD 258 (314)
Q Consensus 242 ~--~~-~~~~~~~~l~~~Q~ 258 (314)
. .+ ..++++.|+.+..-
T Consensus 201 s~~i~~ai~~A~~W~~~~~i 220 (290)
T TIGR02474 201 SAEIKEAIRAGVAWFDTSRI 220 (290)
T ss_pred CHHHHHHHHHHHHHHHHCCC
Confidence 1 11 25789999998764
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.38 E-value=0.00096 Score=59.78 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhccCCCCcccCCCC----CCCchh----hhHHHHHHHHHhcC----CC----------cccHHHHHHHHH
Q 021308 53 DEEDVISWILKCQDESGGFAGNIG----HDPHVL----YTLSAVQVLALFDK----VD----------ILDADKVSNYIV 110 (314)
Q Consensus 53 ~~~~~~~~l~~~q~~dGGf~~~~~----~~~~~~----~T~~al~~L~~l~~----~~----------~~~~~~~~~~l~ 110 (314)
-.+++++||++.|+++|||+.+.. ...|+. .+...+..|..+.. +. ....+++++||.
T Consensus 68 A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL 147 (290)
T TIGR02474 68 AARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL 147 (290)
T ss_pred HHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999986532 112111 12244445544321 01 113578999999
Q ss_pred hccCCCCCccc
Q 021308 111 GLQNEDGSFSG 121 (314)
Q Consensus 111 ~~Q~~dGgf~~ 121 (314)
+.|-++||+-.
T Consensus 148 ktQ~~~gg~~t 158 (290)
T TIGR02474 148 KTQVVQNGKLT 158 (290)
T ss_pred HhhcccCCcCC
Confidence 99999887643
No 61
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.017 Score=62.50 Aligned_cols=228 Identities=18% Similarity=0.224 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHh-------ccCCCCcccCCCC--CCCchhhhHHHHHHHHHhcCC---CcccH
Q 021308 35 GAYWGLTTLDILGKLDAVDEEDVISWILK-------CQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKV---DILDA 102 (314)
Q Consensus 35 ~~~~al~~L~lLg~~~~~~~~~~~~~l~~-------~q~~dGGf~~~~~--~~~~~~~T~~al~~L~~l~~~---~~~~~ 102 (314)
..++++.=|...+...++.++++.++|.. -+++||.|+.+-. ..+..+-|.+.+.++....++ +..-+
T Consensus 947 Pni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i 1026 (1436)
T KOG1366|consen 947 PNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVI 1026 (1436)
T ss_pred chhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHH
Confidence 35566666666666655667778887754 3469999987644 566788888888888877654 33347
Q ss_pred HHHHHHHHhccCCCCCcccCC--------CCCcccchHHHHHHHHHHhCCCC--ccCHHHHHHHHHhccCCCCCCCCCCC
Q 021308 103 DKVSNYIVGLQNEDGSFSGDI--------WGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTPG 172 (314)
Q Consensus 103 ~~~~~~l~~~Q~~dGgf~~~~--------~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~q~~dGGf~~~p~ 172 (314)
.++++||...|.++|+|.... ++..+. .++.++.+--... .....++..|+.+.- +.+ ...+
T Consensus 1027 ~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~----~~l~~~~l~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~- 1098 (1436)
T KOG1366|consen 1027 TQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDI----VALTAIVLSVILDVDNASIQKAVAYLEESL--DSG-SMDV- 1098 (1436)
T ss_pred HHHHHHHHHhhccCceEeccccccchhhhcCCCCc----ceeeeEeeeeeccchhhHHHHHHHHHhhcc--Ccc-cccc-
Confidence 889999999999999996432 122222 0111111100111 123567777775543 322 1111
Q ss_pred CccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCc----ccC----------CC-CCCCCchhHHHHHHHHHh
Q 021308 173 GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG----LNG----------RP-EKLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 173 ~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GG----f~~----------~~-~~~~d~~yt~~~~~~L~~ 237 (314)
+| .|+.+.++.-...+...+.+.. |...-...|+ |.. .+ ....|+..|-|++-++..
T Consensus 1099 ------~~-~a~~ayAl~l~~sp~a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~ 1170 (1436)
T KOG1366|consen 1099 ------YT-VAITAYALQLAKSPQAAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLL 1170 (1436)
T ss_pred ------ch-HHHHHHHHHhccCchHHHHHHh-hhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHH
Confidence 11 2222222211111111222222 2222111111 111 11 113456777666666666
Q ss_pred hccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccC
Q 021308 238 IDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLE 288 (314)
Q Consensus 238 l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~ 288 (314)
+.... -...+++||.+-|+ ..|||+. ...|.-++.+|+-..
T Consensus 1171 ~~~~~--~~~pivrWl~~qr~-~~GGf~S-------TQdTvvalqaLs~y~ 1211 (1436)
T KOG1366|consen 1171 LAQVD--YALPIVRWLVEQRN-ALGGFSS-------TQDTVVALQALSEYA 1211 (1436)
T ss_pred hcccC--cCchhHhhhhhhhc-ccCceee-------hHHHHHHHHHHHHhh
Confidence 66554 23459999999888 7999985 567777888877664
No 62
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.64 E-value=0.27 Score=50.46 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=80.9
Q ss_pred HHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCC-CCCCCCCCCC-ccchhhhHHHHHH
Q 021308 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPGG-ESHSGQIFCCVGA 186 (314)
Q Consensus 109 l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~-dGGf~~~p~~-~s~~~~T~~al~~ 186 (314)
+...|..||||..+|. +|.+++ +.. .-+++.+||.+.... +||. |.. +.+.....+.|-+
T Consensus 258 v~~~q~~~GS~~~SPS------aTAaaL-----~~~----~d~~cl~YL~~~~~k~~GgV---P~vyP~d~fE~LwlVDt 319 (800)
T PLN02592 258 LLKLQCQDGSFLFSPS------STAFAL-----MQT----KDENCLEYLNKAVQRFNGGV---PNVYPVDLFEHIWAVDR 319 (800)
T ss_pred HhcccCCCCCccCCch------HHHHHH-----hcc----CchHHHHHHHHHHHHcCCCC---CCCCCCcHHHHHHHHHH
Confidence 6677888999987762 232222 221 236889999886544 4553 432 3345566788888
Q ss_pred HHHhhcCCc--CCHHHHHHHHHccCcCCC-cccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCC
Q 021308 187 LAIAGALHH--VDKDLLGWWLCERQVKSG-GLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGG 263 (314)
Q Consensus 187 L~ll~~~~~--~~~~~~~~~L~~~Q~~~G-Gf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GG 263 (314)
|..+|.... .+++..++.+-+.-...| ||.. .....|..-|--++..|++.|.. +..+-.-+| . .+|.
T Consensus 320 LqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFRLLRqhGy~--VS~DvF~~F-----~-~~g~ 390 (800)
T PLN02592 320 LQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFRLLRLHGHQ--VSADVFKHF-----E-KGGE 390 (800)
T ss_pred HHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHHHHHHcCCC--CChHHHHhh-----c-CCCC
Confidence 888886433 346777777765322222 3422 12246888887788888888864 555544444 2 3688
Q ss_pred cCCCCC
Q 021308 264 ISDRPD 269 (314)
Q Consensus 264 f~~~p~ 269 (314)
|...++
T Consensus 391 F~~~~g 396 (800)
T PLN02592 391 FFCFAG 396 (800)
T ss_pred cccccc
Confidence 876553
No 63
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=96.27 E-value=1.3 Score=44.57 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHH
Q 021308 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI 109 (314)
Q Consensus 30 ~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l 109 (314)
..++..+||++.+|..||...+ +.+.+|+++.+.-.+. ..++...|+|+.+...|+....+ ..++.+-+
T Consensus 46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~~~-~~~~~~~l 114 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKVSV-SNEVKSLL 114 (636)
T ss_pred cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCcccC-cHHHHHHH
Confidence 3457779999999999997654 4889999998854321 13588999999999999842221 34455555
Q ss_pred HhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCCCC
Q 021308 110 VGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDG 165 (314)
Q Consensus 110 ~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~dG 165 (314)
...-+.| .++...|.++.++..+|.. ...+.++.++-|...+..|.
T Consensus 115 ~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd 161 (636)
T PF05817_consen 115 KAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD 161 (636)
T ss_pred HHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc
Confidence 5543332 2455589999999999862 23477788888877776643
No 64
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.064 Score=58.24 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=106.5
Q ss_pred HHHHHHHHHHc-------ccCCCCcccccc--ccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccC
Q 021308 6 ADKHVKYIISV-------EKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAG 73 (314)
Q Consensus 6 ~~~~~~yl~~~-------~~~~g~~~~~~~--~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~ 73 (314)
++++++||..- +++||+|..++. .....|.+-|.+.+++..... ++....++.+||...|.++|.|--
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 46777777762 458999987776 566889999999999988754 233467899999999999998853
Q ss_pred CC--------CCCCch-hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCC
Q 021308 74 NI--------GHDPHV-LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR 144 (314)
Q Consensus 74 ~~--------~~~~~~-~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~ 144 (314)
.- |..... ..|...+..+. . .+.....+.++|+.+.-.. + . .+....-...-++.+...
T Consensus 1046 ~~~v~~~~~qg~l~~~~~l~~~~l~~~~--~-~~~~~~~~a~~~~~~~~~~-~--~------~~~~~~a~~ayAl~l~~s 1113 (1436)
T KOG1366|consen 1046 VGEVLHNEMQGGLQDIVALTAIVLSVIL--D-VDNASIQKAVAYLEESLDS-G--S------MDVYTVAITAYALQLAKS 1113 (1436)
T ss_pred cccccchhhhcCCCCcceeeeEeeeeec--c-chhhHHHHHHHHHhhccCc-c--c------cccchHHHHHHHHHhccC
Confidence 21 111111 11111111110 0 0123356677777664322 1 1 122111112223333333
Q ss_pred CCccCHHHHHHHHHhccCCCCC----CC----------CCC-CCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC
Q 021308 145 LDKINVDKAVEYIVSCKNLDGG----FG----------CTP-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (314)
Q Consensus 145 ~~~~~~~~~~~~l~~~q~~dGG----f~----------~~p-~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q 209 (314)
......+.. +++.-...|. |. ..+ ...-+...|.+|+-++..+...+ -..-.++||.+++
T Consensus 1114 --p~a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl~~qr 1188 (1436)
T KOG1366|consen 1114 --PQAAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD--YALPIVRWLVEQR 1188 (1436)
T ss_pred --chHHHHHHh-hhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC--cCchhHhhhhhhh
Confidence 222222222 3332222221 11 111 11235567888876666665443 3445789999999
Q ss_pred cCCCcccCC
Q 021308 210 VKSGGLNGR 218 (314)
Q Consensus 210 ~~~GGf~~~ 218 (314)
+..|||+..
T Consensus 1189 ~~~GGf~ST 1197 (1436)
T KOG1366|consen 1189 NALGGFSST 1197 (1436)
T ss_pred cccCceeeh
Confidence 999999753
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=95.43 E-value=0.033 Score=50.05 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccchHHHHHHHHHHhCCCC-----ccCHHHHHHHHHhccCCCCCCCCC-CCCc-cchhhhH---HHHHHHHHhhc----C
Q 021308 128 DTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT-PGGE-SHSGQIF---CCVGALAIAGA----L 193 (314)
Q Consensus 128 d~~~ty~al~~l~ll~~~~-----~~~~~~~~~~l~~~q~~dGGf~~~-p~~~-s~~~~T~---~al~~L~ll~~----~ 193 (314)
|-..|+..+.-|+-+-... .....|+++||++.|.++|||... |... -|...|| ..+..|.+|.. .
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~ 116 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK 116 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence 4456777666665543211 134678999999999999999865 4221 2333344 33444444321 1
Q ss_pred Cc---C----------CHHHHHHHHHccCcC-CC---cccC------------CCCCCCCchhHHHHHHHHHhhccCcc-
Q 021308 194 HH---V----------DKDLLGWWLCERQVK-SG---GLNG------------RPEKLPDVCYSWWVLSSLIMIDRVHW- 243 (314)
Q Consensus 194 ~~---~----------~~~~~~~~L~~~Q~~-~G---Gf~~------------~~~~~~d~~yt~~~~~~L~~l~~~~~- 243 (314)
.. + .+++++++|++.|.. +| +|.- |..+++.++.+--+.....++....+
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 11 1 267899999999973 22 4422 32334444432223333333332221
Q ss_pred ---c-ChHHHHHHHHhhcC
Q 021308 244 ---I-NKDKLVKFILDCQD 258 (314)
Q Consensus 244 ---~-~~~~~~~~l~~~Q~ 258 (314)
+ ..+++++|+.+..-
T Consensus 197 ~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 197 PEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp HHHHHHHHHHHHHHCCTSE
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 1 25778999987664
No 66
>PLN02279 ent-kaur-16-ene synthase
Probab=95.14 E-value=0.73 Score=47.45 Aligned_cols=97 Identities=15% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCC----ccc
Q 021308 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE----VDT 129 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~----~d~ 129 (314)
.+..++-|+++-+.- ...+.++.|.+..++=.. +.....--..+++||.+.|.+||||+...... .-+
T Consensus 35 ~~~~~~~i~~~l~~~-------e~s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~l 106 (784)
T PLN02279 35 FEGTKERIKKMFDKV-------ELSVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDAL 106 (784)
T ss_pred chhHHHHHHHHhccC-------cCCCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhh
Confidence 455666666653321 134668888887666554 33222334679999999999999998642211 123
Q ss_pred chHHHHHHHHHHhCCCCccCHHHHHHHHHh
Q 021308 130 RFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (314)
Q Consensus 130 ~~ty~al~~l~ll~~~~~~~~~~~~~~l~~ 159 (314)
-.|-+++.+|.-=+. .+..+++.+.||.+
T Consensus 107 l~TlAcvlAL~~w~~-~~~~~~~gl~fi~~ 135 (784)
T PLN02279 107 SSTLASILALKKWGV-GEEQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHHHHHHHhc-CcccchhhHHHHHH
Confidence 345444444432222 23345666777764
No 67
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=94.41 E-value=0.19 Score=45.95 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred chhhhHH--HHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCC--CC-c-------
Q 021308 80 HVLYTLS--AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR--LD-K------- 147 (314)
Q Consensus 80 ~~~~T~~--al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~--~~-~------- 147 (314)
+...+|+ ++.+|++.-...++....+.+++...+ .+..|+. ...+.....|+.+|..+.+ .. .
T Consensus 140 ~P~TnyYq~sL~vLALCv~~~~~~~~~v~kL~~~~~-~~~~~~~----~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~ 214 (326)
T PF01122_consen 140 HPLTNYYQYSLGVLALCVHNKRVSLSVVAKLLKAEN-HNFYHGS----QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQ 214 (326)
T ss_dssp S-SSGHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-SSTSS-S----TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHH
T ss_pred CCCCcccchHHHHHHHHccCCCcCHHHHHHHHHHHH-hhcccCC----CCCccHHHHHHHHHHHHhccCcCcHhHHHHHH
Confidence 3445554 455565553323443444555555444 3422221 1223334444444444432 11 1
Q ss_pred cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCc---CCHHHHHHHHHccCcCCCcccCCCCCCCC
Q 021308 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNGRPEKLPD 224 (314)
Q Consensus 148 ~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~---~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d 224 (314)
..++++++.|++.|.+||-||+. ..|--|+.+|...+.... .+..++.++++.. ..+|.|+.-
T Consensus 215 ~~i~~~~~kIl~~q~~~G~~GNi-------ySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~nP------ 280 (326)
T PF01122_consen 215 QAIRSLVEKILSQQKPNGLFGNI-------YSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQNP------ 280 (326)
T ss_dssp HHHHHHHHHHHHTB-TTS-BSST-------TTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-SH------
T ss_pred HHHHHHHHHHHHhcCCCCcccch-------hhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCCH------
Confidence 12456788899999999999865 457788888887765321 3577889999884 458888642
Q ss_pred chhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCC
Q 021308 225 VCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 225 ~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
--+.+.|..|......|... ..|+. ++|-+.-
T Consensus 281 ----~a~aQiLPaL~gKTYLDv~~-----~~C~~-~~~~~~~ 312 (326)
T PF01122_consen 281 ----MAIAQILPALNGKTYLDVNS-----VDCSS-PDGNLNP 312 (326)
T ss_dssp ----HHHHHHHHHHTT--GGGGGS-------SSS---EE---
T ss_pred ----HHHHHHHHHHcCCCccccCC-----CCCCC-CCCcccc
Confidence 12455676666555555432 47887 6776653
No 68
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=90.93 E-value=0.52 Score=42.47 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=57.5
Q ss_pred CHHHHHHHHHhccCCCCcccCC-C---CCCCchhhhH---HHHHHHHHhc-------CCCcc----------cHHHHHHH
Q 021308 53 DEEDVISWILKCQDESGGFAGN-I---GHDPHVLYTL---SAVQVLALFD-------KVDIL----------DADKVSNY 108 (314)
Q Consensus 53 ~~~~~~~~l~~~q~~dGGf~~~-~---~~~~~~~~T~---~al~~L~~l~-------~~~~~----------~~~~~~~~ 108 (314)
-.++.++||++.|.++|||... | ++..| .|| ..+.+|.+|. .+..+ ..++++++
T Consensus 63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~--ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~c 140 (289)
T PF09492_consen 63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDH--ITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDC 140 (289)
T ss_dssp HHHHHHHHHHHHS-TTS--BSECS--SGGGGS--EE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCc--eEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999864 2 12222 222 2234444441 12111 25789999
Q ss_pred HHhccCCC----CCcccC-------C-----CCCcccchHHHHHHHHHHhCCC--Cc---cCHHHHHHHHHhccCCCCCC
Q 021308 109 IVGLQNED----GSFSGD-------I-----WGEVDTRFSYIAICCLSILQRL--DK---INVDKAVEYIVSCKNLDGGF 167 (314)
Q Consensus 109 l~~~Q~~d----Ggf~~~-------~-----~~~~d~~~ty~al~~l~ll~~~--~~---~~~~~~~~~l~~~q~~dGGf 167 (314)
|.++|-.. .+|+.- | ...+.+...=++-.+..|+... +. ..++.+++|+.+.+-++.-+
T Consensus 141 iL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 141 ILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp HHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred HHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 99999832 345421 1 1123344333444445555542 21 24677899998877665444
No 69
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.42 E-value=1.5 Score=40.22 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=67.9
Q ss_pred HHHHHHHh--cCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC--C------cc--cHHHH
Q 021308 38 WGLTTLDI--LGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV--D------IL--DADKV 105 (314)
Q Consensus 38 ~al~~L~l--Lg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~--~------~~--~~~~~ 105 (314)
+++..|++ .+.. .....+.-+..-.+.+..|+ ..-++..+..|+.+|..+... . .+ .++++
T Consensus 148 ~sL~vLALCv~~~~---~~~~~v~kL~~~~~~~~~~~----~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~ 220 (326)
T PF01122_consen 148 YSLGVLALCVHNKR---VSLSVVAKLLKAENHNFYHG----SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSL 220 (326)
T ss_dssp HHHHHHHHHHTTHH---HHHHHHHHHHHHHHSSTSS-----STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCC---cCHHHHHHHHHHHHhhcccC----CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHH
Confidence 36666665 3322 23344454444445542221 123566777788888877531 1 11 24677
Q ss_pred HHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCc---cCHHHHHHHHHhccCCCCCCCC
Q 021308 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGC 169 (314)
Q Consensus 106 ~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~---~~~~~~~~~l~~~q~~dGGf~~ 169 (314)
++.|.+.|.+||.|+. +++|--|+.+|...+.... -+..++.++++... ++|.|..
T Consensus 221 ~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 221 VEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred HHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC
Confidence 8889999999999973 5667767777665554221 24678899998854 6899964
No 70
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=83.95 E-value=51 Score=33.27 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcc
Q 021308 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGF 71 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf 71 (314)
-++.+++++.+|..+|.. ...++.++|+.+.|.++|.|
T Consensus 296 W~RD~~~~a~Al~~~G~~--~~a~~~l~~l~~~q~~~G~~ 333 (616)
T TIGR01577 296 WGRDASYIATALDRAGYH--DRVDRFFRWAMQTQSRDGSW 333 (616)
T ss_pred ccccHHHHHHHHHHCCCH--HHHHHHHHHHHHhhCcCCCc
Confidence 344577888888888864 35788999999999999986
No 71
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=79.57 E-value=75 Score=32.27 Aligned_cols=172 Identities=19% Similarity=0.152 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHH
Q 021308 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIV 110 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~ 110 (314)
++-..||++.+...|+.... ..+++.+-+...-++| +.+...|+|+.+|..+|. .+..|.+++++-|.
T Consensus 86 ~~e~lfya~~~~~~L~C~~~-~~~~~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~ 154 (636)
T PF05817_consen 86 DLESLFYAASASKALKCKVS-VSNEVKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQ 154 (636)
T ss_pred hHHHHHHHHHHHhhcCCccc-CcHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 46679999999999994322 2344555555443332 457779999999999984 23447888899898
Q ss_pred hccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCc-----cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHH
Q 021308 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVG 185 (314)
Q Consensus 111 ~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~-----~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~ 185 (314)
..+..|.+ +...-.++.+++.|+.... ..++.++...-+ -||..-...|. ...|.-.+.
T Consensus 155 ~~l~kdds----------~~s~g~al~~aa~L~~~a~l~~~~~~ieD~v~qaDE---v~~~~LqFegg---Ls~TA~vv~ 218 (636)
T PF05817_consen 155 ASLKKDDS----------LLSLGYALHAAAQLSKQADLADIVERIEDAVAQADE---VDGKYLQFEGG---LSTTALVVR 218 (636)
T ss_pred HHhccccc----------HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhhh---hcccceeecCC---chhhHHHHH
Confidence 88877654 2333446666777764221 123333333222 13322222221 223333333
Q ss_pred HHHH----hhcCCcCC---HHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021308 186 ALAI----AGALHHVD---KDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 186 ~L~l----l~~~~~~~---~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
++.. .+...++. +-+..+|+++|... .+....|..+.+|..|...
T Consensus 219 g~~~la~~~~k~~~i~~dQivklanylLsrr~v-----------~s~k~a~~l~~al~~L~~N 270 (636)
T PF05817_consen 219 GIYKLADAVGKKPPIKEDQIVKLANYLLSRRSV-----------QSPKDAFNLLEALKSLSSN 270 (636)
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCC-----------CCHHHHHHHHHHHHHHhhC
Confidence 3322 23222333 45678999997532 2345566777788777643
No 72
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=79.21 E-value=75 Score=32.07 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHHHHHhc-cCC-CCCCCCCCCC-----ccchhhhHHHHHHHHHhhcCCcC-----------CHHHHHHHHHccCcC
Q 021308 150 VDKAVEYIVSC-KNL-DGGFGCTPGG-----ESHSGQIFCCVGALAIAGALHHV-----------DKDLLGWWLCERQVK 211 (314)
Q Consensus 150 ~~~~~~~l~~~-q~~-dGGf~~~p~~-----~s~~~~T~~al~~L~ll~~~~~~-----------~~~~~~~~L~~~Q~~ 211 (314)
+.+.++-|.+. ..+ +||+..-++. -+=...|+|.+-++..+++.+.. ...++++|+++..++
T Consensus 499 ~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~ 578 (616)
T TIGR01577 499 MVKMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTD 578 (616)
T ss_pred HHHHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCC
Confidence 33445555532 222 4566443321 12235688888888777764311 245678999998777
Q ss_pred CCcccC
Q 021308 212 SGGLNG 217 (314)
Q Consensus 212 ~GGf~~ 217 (314)
.|=++-
T Consensus 579 ~Gll~E 584 (616)
T TIGR01577 579 LGLLPE 584 (616)
T ss_pred CCCCcc
Confidence 775543
No 73
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.04 E-value=1e+02 Score=28.92 Aligned_cols=183 Identities=18% Similarity=0.226 Sum_probs=92.6
Q ss_pred CCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccCCCCCc
Q 021308 49 LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDIWGEV 127 (314)
Q Consensus 49 ~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~ 127 (314)
.+...++++++||.+.....-. ...........-.+|..+|. .+...++..++.+.+....||=|+-.+....
T Consensus 129 L~~~~k~~l~~wL~~~~~~~~~------~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~ 202 (361)
T PF10022_consen 129 LDEEEKENLVDWLKQIRGIKPP------DNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQF 202 (361)
T ss_pred CCHHHHHHHHHHHHhcCcCCCc------cchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCC
Confidence 4556789999999976543211 11223444444455666663 3454567778888888888774443343444
Q ss_pred ccchHH----HHHHHHHHhCCCCcc----CHHHHHHHHHh---ccCCCCCCCCCCCCccchhhhH---HHHHHHHHhhcC
Q 021308 128 DTRFSY----IAICCLSILQRLDKI----NVDKAVEYIVS---CKNLDGGFGCTPGGESHSGQIF---CCVGALAIAGAL 193 (314)
Q Consensus 128 d~~~ty----~al~~l~ll~~~~~~----~~~~~~~~l~~---~q~~dGGf~~~p~~~s~~~~T~---~al~~L~ll~~~ 193 (314)
|=+..| +.+....+.+..... -.+++.+|... .-.+||.+-.. ..| ..|=| ..++++++++.+
T Consensus 203 DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~--GRS-ltYRfA~~a~~~~~a~~~~l 279 (361)
T PF10022_consen 203 DYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPPF--GRS-LTYRFAAFAFLAAAALAGVL 279 (361)
T ss_pred cchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCc--ccc-HHHHHHHHHHHHHHHHcCCC
Confidence 443332 222333344443211 23455556544 34578866433 222 22333 334444445541
Q ss_pred -CcC-C---H----HHHHHHHHcc-C--cCCC----cccCCC----CCCCCchhHHHHHHHHHhhcc
Q 021308 194 -HHV-D---K----DLLGWWLCER-Q--VKSG----GLNGRP----EKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 194 -~~~-~---~----~~~~~~L~~~-Q--~~~G----Gf~~~~----~~~~d~~yt~~~~~~L~~l~~ 240 (314)
.++ + + .+.++|-.++ . ..+| ||.+.- .......+.||++-++-.|+-
T Consensus 280 p~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~L 346 (361)
T PF10022_consen 280 PEPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGL 346 (361)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcC
Confidence 122 2 2 2333444443 2 2344 555521 123445677999999877764
No 74
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.75 E-value=1.5e+02 Score=27.75 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=92.7
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccCCCCcccCCCCC--
Q 021308 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGH-- 77 (314)
Q Consensus 1 ~~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~~dGGf~~~~~~-- 77 (314)
|++-.+++.++||++.....-+. .+-+.+...+-..|..+|.. +....+..++-|.++...||=|+-.+..
T Consensus 129 L~~~~k~~l~~wL~~~~~~~~~~------nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~ 202 (361)
T PF10022_consen 129 LDEEEKENLVDWLKQIRGIKPPD------NNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQF 202 (361)
T ss_pred CCHHHHHHHHHHHHhcCcCCCcc------chhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCC
Confidence 34556889999999876543331 22333333344455556643 4445677888888888888766544432
Q ss_pred --CCchhhhHHHHHHHHHhcCCCc----ccHHHHHHHHHh---ccCCCCCcccCCCCCcccc--hHHHHHHHHHHhCCCC
Q 021308 78 --DPHVLYTLSAVQVLALFDKVDI----LDADKVSNYIVG---LQNEDGSFSGDIWGEVDTR--FSYIAICCLSILQRLD 146 (314)
Q Consensus 78 --~~~~~~T~~al~~L~~l~~~~~----~~~~~~~~~l~~---~Q~~dGgf~~~~~~~~d~~--~ty~al~~l~ll~~~~ 146 (314)
+..-..=++.+..+.+.++.+. .-++++.+|... ...+||.+-. .|.+=++ .+...++++++.+..+
T Consensus 203 DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~--~GRSltYRfA~~a~~~~~a~~~~lp 280 (361)
T PF10022_consen 203 DYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPP--FGRSLTYRFAAFAFLAAAALAGVLP 280 (361)
T ss_pred cchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCC--ccccHHHHHHHHHHHHHHHHcCCCC
Confidence 1222222333444444554321 124555666443 4468887642 3333221 1223444455555521
Q ss_pred -cc-C---HH----HHHHHHHhc-c--CCCC----CCCCC-C---CCccchhhhHHHHHHHHHhhcC
Q 021308 147 -KI-N---VD----KAVEYIVSC-K--NLDG----GFGCT-P---GGESHSGQIFCCVGALAIAGAL 193 (314)
Q Consensus 147 -~~-~---~~----~~~~~l~~~-q--~~dG----Gf~~~-p---~~~s~~~~T~~al~~L~ll~~~ 193 (314)
+. . ++ +.++|..+. . ..|| ||... + ..-+..++-|++..++..|+.+
T Consensus 281 ~~~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp 347 (361)
T PF10022_consen 281 EPLISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLP 347 (361)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCC
Confidence 11 1 22 334444444 2 2344 33321 1 1124566778888877666543
No 75
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=56.41 E-value=1.7e+02 Score=27.12 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHHHhc--cCCCCcccCCC---C----CCCchhhhHHHHHHHHHh----cCCCcc-cHHHHHHHHHh-ccCCC-C
Q 021308 54 EEDVISWILKC--QDESGGFAGNI---G----HDPHVLYTLSAVQVLALF----DKVDIL-DADKVSNYIVG-LQNED-G 117 (314)
Q Consensus 54 ~~~~~~~l~~~--q~~dGGf~~~~---~----~~~~~~~T~~al~~L~~l----~~~~~~-~~~~~~~~l~~-~Q~~d-G 117 (314)
.+.++.|.... ..+.|||...- | ...++..+...|-+++.. +...-. -.+++++||.+ ...++ |
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~G 95 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHG 95 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCC
Confidence 46677777663 24578887632 1 223455555555555543 221111 24678899888 44456 8
Q ss_pred CcccC--CCCC-----cccchHHHHHHHHHHhCCCC--c---cCHHHHHHHHHhccC-CCCCC
Q 021308 118 SFSGD--IWGE-----VDTRFSYIAICCLSILQRLD--K---INVDKAVEYIVSCKN-LDGGF 167 (314)
Q Consensus 118 gf~~~--~~~~-----~d~~~ty~al~~l~ll~~~~--~---~~~~~~~~~l~~~q~-~dGGf 167 (314)
+|... +.+. .++..-..++.+++-+.... . ...+++++++.+... .+|++
T Consensus 96 g~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 96 GWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred CEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 87432 1221 12222222333333322211 1 234567788877653 45665
No 76
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.83 E-value=3e+02 Score=28.08 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=28.4
Q ss_pred HHHHHHHHHh-ccCCCCCcccCC----CCCcccchHHHHHHHHHHhC
Q 021308 102 ADKVSNYIVG-LQNEDGSFSGDI----WGEVDTRFSYIAICCLSILQ 143 (314)
Q Consensus 102 ~~~~~~~l~~-~Q~~dGgf~~~~----~~~~d~~~ty~al~~l~ll~ 143 (314)
.+.+++||.+ +..++|||-.+. +++..-.++++.--+-..||
T Consensus 298 a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg 344 (667)
T COG1331 298 AEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG 344 (667)
T ss_pred HHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc
Confidence 5789999665 778899996532 34445566776666666666
No 77
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=34.02 E-value=1.5e+02 Score=27.14 Aligned_cols=86 Identities=22% Similarity=0.165 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHhcCCCcc------cHHHHHHHHHhccCCCCCcccC---CC--CCcccchHHHHHHHHHH-h--CCCC
Q 021308 81 VLYTLSAVQVLALFDKVDIL------DADKVSNYIVGLQNEDGSFSGD---IW--GEVDTRFSYIAICCLSI-L--QRLD 146 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~------~~~~~~~~l~~~Q~~dGgf~~~---~~--~~~d~~~ty~al~~l~l-l--~~~~ 146 (314)
.+.++..+.+|..|.+.+.. -.++.++.|.+.|.+||.|... |. ...|+..|..+..+|.. + +..+
T Consensus 190 gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d 269 (336)
T PF07470_consen 190 GWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLD 269 (336)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSST
T ss_pred hHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCc
Confidence 44455555566666431110 1346678889999999998643 22 23344444333333321 2 2221
Q ss_pred c----cCHHHHHHHHHhc-cCCCCC
Q 021308 147 K----INVDKAVEYIVSC-KNLDGG 166 (314)
Q Consensus 147 ~----~~~~~~~~~l~~~-q~~dGG 166 (314)
. ...+++.+.|.+. -++||.
T Consensus 270 ~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 270 PEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred cHHHHHHHHHHHHHHHhCccCCCCC
Confidence 1 2356788999998 778886
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=33.58 E-value=89 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhccCCCCCCCCCC
Q 021308 149 NVDKAVEYIVSCKNLDGGFGCTP 171 (314)
Q Consensus 149 ~~~~~~~~l~~~q~~dGGf~~~p 171 (314)
.+++.++.|.+||.+||=++..+
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~ 106 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYP 106 (520)
T ss_pred HHHHHHHHHHHhccCCceecccc
Confidence 45778999999999998655443
No 79
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=30.84 E-value=4.7e+02 Score=26.72 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccC--CCCC-------cccchHHHHHHHHHHhCCCC----c
Q 021308 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD--IWGE-------VDTRFSYIAICCLSILQRLD----K 147 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~--~~~~-------~d~~~ty~al~~l~ll~~~~----~ 147 (314)
+...++.+.+|..+|..+ ..++.++||.+.|.++|.|-.. ..++ .|... ..+.++..+.+.. .
T Consensus 297 ~RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g--~~i~~~~~l~~~~~~~~~ 372 (648)
T TIGR01535 297 PRDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETA--FPILLAYRLHRYDHAFYD 372 (648)
T ss_pred hhhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHH--HHHHHHHHHHHcCcHHHH
Confidence 567888888888888532 4678999999999999987321 1221 23222 2222222222211 2
Q ss_pred cCHHHHHHHHHhcc
Q 021308 148 INVDKAVEYIVSCK 161 (314)
Q Consensus 148 ~~~~~~~~~l~~~q 161 (314)
..++++++||.+.-
T Consensus 373 ~~vk~aadfl~~~~ 386 (648)
T TIGR01535 373 KMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHcC
Confidence 34788999998864
No 80
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=6.8e+02 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccC-CCCcccCCCCCCC
Q 021308 54 EEDVISWILKCQD-ESGGFAGNIGHDP 79 (314)
Q Consensus 54 ~~~~~~~l~~~q~-~dGGf~~~~~~~~ 79 (314)
.+++.+.|.+... ..|||+..|..++
T Consensus 185 l~~~~~~l~~~~D~~~GGfg~~pKFP~ 211 (667)
T COG1331 185 LDRAAEALARSFDREYGGFGSAPKFPP 211 (667)
T ss_pred HHHHHHHHHHhcchhhCCcCCCCCCCC
Confidence 5577778877664 5699999887543
No 81
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=25.97 E-value=2e+02 Score=26.23 Aligned_cols=161 Identities=17% Similarity=0.073 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccC--CCCcccCCCCCCC--chhhhHHHHHHHHHhcCC----C--cccHHHHHHHHHhccCC-CCCcccC
Q 021308 54 EEDVISWILKCQD--ESGGFAGNIGHDP--HVLYTLSAVQVLALFDKV----D--ILDADKVSNYIVGLQNE-DGSFSGD 122 (314)
Q Consensus 54 ~~~~~~~l~~~q~--~dGGf~~~~~~~~--~~~~T~~al~~L~~l~~~----~--~~~~~~~~~~l~~~Q~~-dGgf~~~ 122 (314)
..+..+|++..++ ++|+|.-...... -+...|+++-.|...+.. . ..-.+.+..+.+.+.++ +|-|...
T Consensus 92 ~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~ 171 (336)
T PF07470_consen 92 AIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHG 171 (336)
T ss_dssp HHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESE
T ss_pred HHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeec
Confidence 5667777775443 5899865322111 233344566666655421 1 11123444555556665 4655321
Q ss_pred --CCCCcc------cchHHHHHHHHH----HhCCCCc------cCHHHHHHHHHhccCCCCCCCCC---CC--Cccchhh
Q 021308 123 --IWGEVD------TRFSYIAICCLS----ILQRLDK------INVDKAVEYIVSCKNLDGGFGCT---PG--GESHSGQ 179 (314)
Q Consensus 123 --~~~~~d------~~~ty~al~~l~----ll~~~~~------~~~~~~~~~l~~~q~~dGGf~~~---p~--~~s~~~~ 179 (314)
..+..+ .|.--|++.++. .|..... ...++.++.|.+.|.+||.|... |. ...+...
T Consensus 172 ~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSa 251 (336)
T PF07470_consen 172 YTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSA 251 (336)
T ss_dssp EETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHH
T ss_pred cCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHH
Confidence 111111 133334444443 3322110 12356678889999999988654 33 3345555
Q ss_pred hHHHHHHHHH-h--hcCCc----CCHHHHHHHHHcc-CcCCCc
Q 021308 180 IFCCVGALAI-A--GALHH----VDKDLLGWWLCER-QVKSGG 214 (314)
Q Consensus 180 T~~al~~L~l-l--~~~~~----~~~~~~~~~L~~~-Q~~~GG 214 (314)
|.....+|.. + +..+. ...+++.+.|.++ -.++|-
T Consensus 252 tA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 252 TAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 5444444432 2 22211 1256788889888 556664
No 82
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=25.59 E-value=1.3e+02 Score=34.21 Aligned_cols=63 Identities=22% Similarity=0.142 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhccCCCCcccCCCC-CCCchhhhHHHHHHHHHhcCC----CcccHHHHHH-HHHhccCC
Q 021308 53 DEEDVISWILKCQDESGGFAGNIG-HDPHVLYTLSAVQVLALFDKV----DILDADKVSN-YIVGLQNE 115 (314)
Q Consensus 53 ~~~~~~~~l~~~q~~dGGf~~~~~-~~~~~~~T~~al~~L~~l~~~----~~~~~~~~~~-~l~~~Q~~ 115 (314)
..+.++.-|.++|..+|+|+.+++ ..++++-|.+++..|-...+. +.....+..+ +++.+|++
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCc
Confidence 356778888899999999998876 788999999999988776432 1112344444 35556665
No 83
>PRK13621 psbV cytochrome c-550; Provisional
Probab=25.34 E-value=1.3e+02 Score=24.88 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHHHHhccCCCCC---cccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCC
Q 021308 102 ADKVSNYIVGLQNEDGS---FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT 170 (314)
Q Consensus 102 ~~~~~~~l~~~Q~~dGg---f~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~ 170 (314)
++.+++|++.-+.-+|+ |...+. . .+.+++.+++++++||+..-...+|||..
T Consensus 109 I~~LV~~iknPms~kg~~~~~~~~mp-------s---------~~~LSdeEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 109 IAALVAYQRDPMSYDGSEESYGCRQV-------P---------EDWMTDEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred HHHHHHHhhCCCCCCcccccccccCC-------c---------cCCCCHHHHHHHHHHHHhhhhhccCCCCc
Confidence 46677788776666553 222211 0 03456778999999999876667889854
No 84
>PRK13617 psbV cytochrome c-550; Provisional
Probab=21.83 E-value=75 Score=26.37 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhccCCCC-CCCCC
Q 021308 99 ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG-GFGCT 170 (314)
Q Consensus 99 ~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dG-Gf~~~ 170 (314)
+-+++.+++||+.=+.-||.+...... +.++. . ..+--+..+++.+++.+..||+....-+| .||..
T Consensus 99 r~nv~aLv~yikdP~sydg~~s~~e~~-P~~~~-~---~imP~~~~LsdeeL~alAayLl~~~k~~~~~wggg 166 (170)
T PRK13617 99 RDNVDALVDYLKDPTSYDGEYSIADLH-PSMRS-A---DLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGGG 166 (170)
T ss_pred CCCHHHHHHHHhChHhhcchhhccccC-ccccc-c---ccCcccCCCCHHHHHHHHHHHHhcccccccccCCc
Confidence 346899999999988878876542110 00000 0 00111223567788999999999876666 67643
No 85
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=21.23 E-value=1.2e+02 Score=24.85 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCC----CCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccC
Q 021308 150 VDKAVEYIVSCKNLDG----GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 150 ~~~~~~~l~~~q~~dG----Gf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (314)
++.+++|++.-+..+| .....|.. ..++..+++....||+.+-...+||++
T Consensus 98 I~~Lv~~iknP~s~kG~~~~~~~~mp~~-----------------~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 98 IQSLVAYQRDPMSYDGSEESYGCRPVPE-----------------DWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHhhCCcccCcccccccccCCcc-----------------cCCCHHHHHHHHHHHHHhhhhcCCCCC
No 86
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=21.17 E-value=99 Score=31.50 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCC---CC----CCCchhhhHHHHHHHHHhcCCCc---
Q 021308 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGN---IG----HDPHVLYTLSAVQVLALFDKVDI--- 99 (314)
Q Consensus 30 ~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~---~~----~~~~~~~T~~al~~L~~l~~~~~--- 99 (314)
..-++.+++++.+|..+|... ..++..+||.+.|.++|.|-.. .| .+-.+..|..-+.++..+.....
T Consensus 294 yvW~RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~ 371 (648)
T TIGR01535 294 LVWPRDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFY 371 (648)
T ss_pred EEehhhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHH
Confidence 456677999999999999653 5788999999999999887321 01 01122333333443333322111
Q ss_pred -ccHHHHHHHHHhcc
Q 021308 100 -LDADKVSNYIVGLQ 113 (314)
Q Consensus 100 -~~~~~~~~~l~~~Q 113 (314)
.-++++++||.+.-
T Consensus 372 ~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 372 DKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHHcC
Confidence 12678999988853
Done!