Query 021308
Match_columns 314
No_of_seqs 171 out of 1726
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 15:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dssb1 a.102.4.3 (B:7-331) Ra 100.0 2E-77 1.5E-81 545.0 34.6 311 2-312 10-320 (325)
2 d2h6fb1 a.102.4.3 (B:521-921) 100.0 6.5E-75 4.7E-79 536.4 26.8 308 2-310 51-392 (401)
3 d1n4qb_ a.102.4.3 (B:) Protein 100.0 7.9E-74 5.7E-78 519.7 28.9 306 2-310 1-338 (346)
4 d3dssb1 a.102.4.3 (B:7-331) Ra 100.0 1E-43 7.3E-48 322.3 26.3 240 2-241 58-298 (325)
5 d2h6fb1 a.102.4.3 (B:521-921) 100.0 2.2E-41 1.6E-45 311.7 20.8 238 3-240 100-355 (401)
6 d1n4qb_ a.102.4.3 (B:) Protein 100.0 2.6E-39 1.9E-43 292.5 24.1 238 2-241 48-318 (346)
7 d2sqca1 a.102.4.2 (A:8-36,A:30 100.0 1.7E-27 1.2E-31 218.0 26.8 277 6-286 8-345 (352)
8 d2sqca1 a.102.4.2 (A:8-36,A:30 99.9 3.4E-23 2.4E-27 189.2 22.2 233 53-289 7-290 (352)
9 d1w6ka1 a.102.4.2 (A:6-99,A:37 99.9 2E-22 1.5E-26 188.5 26.4 279 7-287 73-435 (448)
10 d1w6ka1 a.102.4.2 (A:6-99,A:37 99.9 7.7E-23 5.6E-27 191.4 20.4 211 6-217 127-405 (448)
11 d2sqca2 a.102.4.2 (A:37-307) S 99.6 4.7E-15 3.5E-19 129.6 14.6 224 32-265 3-267 (271)
12 d2sqca2 a.102.4.2 (A:37-307) S 99.5 1.2E-13 8.8E-18 120.6 13.9 218 79-309 2-257 (271)
13 d1hzfa_ a.102.4.4 (A:) C4adg f 99.1 3.2E-09 2.3E-13 94.1 17.8 213 54-285 54-318 (326)
14 d1hzfa_ a.102.4.4 (A:) C4adg f 98.9 2.5E-08 1.8E-12 88.2 17.2 212 7-236 55-318 (326)
15 d1c3da_ a.102.4.4 (A:) C3D, a 98.7 4.5E-07 3.3E-11 78.5 17.8 208 54-286 56-288 (294)
16 d1r76a_ a.102.5.1 (A:) Polygal 98.6 1.2E-07 8.5E-12 85.5 11.7 167 101-268 82-337 (408)
17 d1r76a_ a.102.5.1 (A:) Polygal 98.6 2.4E-07 1.7E-11 83.5 13.3 163 52-217 81-335 (408)
18 d1c3da_ a.102.4.4 (A:) C3D, a 98.5 4.6E-06 3.3E-10 71.9 18.9 206 7-237 57-288 (294)
19 d1w6ka2 a.102.4.2 (A:100-378) 98.4 4.7E-07 3.4E-11 77.5 9.7 95 134-241 8-104 (279)
20 d1gxma_ a.102.5.1 (A:) Polygal 98.4 1.3E-07 9.6E-12 82.4 5.8 158 56-215 27-248 (324)
21 d1gxma_ a.102.5.1 (A:) Polygal 98.3 2E-07 1.4E-11 81.3 4.1 161 105-266 28-250 (324)
22 d1w6ka2 a.102.4.2 (A:100-378) 98.2 1.3E-06 9.3E-11 74.7 8.1 74 39-112 9-84 (279)
23 d1lf6a1 a.102.1.5 (A:288-684) 71.9 17 0.0012 30.5 11.3 80 81-162 55-143 (397)
24 d2d5ja1 a.102.1.7 (A:1-377) Un 55.5 20 0.0015 30.1 8.4 153 39-191 97-293 (377)
25 d1ulva1 a.102.1.5 (A:274-686) 54.2 44 0.0032 27.9 10.6 82 31-114 56-149 (413)
26 d1lf6a1 a.102.1.5 (A:288-684) 50.3 37 0.0027 28.2 9.4 81 32-114 54-143 (397)
27 d1ulva1 a.102.1.5 (A:274-686) 28.7 1.5E+02 0.011 24.3 15.1 81 80-162 57-149 (413)
28 d1rk8c_ b.72.3.1 (C:) Pym (Wit 24.2 3.2 0.00024 21.6 -1.5 14 108-121 10-23 (33)
29 d1vg5a_ a.5.2.1 (A:) Rhomboid 24.2 41 0.003 21.0 3.7 16 149-164 56-71 (73)
30 d1qaza_ a.102.3.1 (A:) Alginat 23.8 1.1E+02 0.008 25.0 7.6 11 111-121 222-232 (351)
31 d1klxa_ a.118.18.1 (A:) Cystei 21.6 1.1E+02 0.0079 20.4 8.3 64 36-111 57-120 (133)
32 d1wiva_ a.5.2.1 (A:) Ubiquitin 21.0 57 0.0041 20.3 3.9 16 149-164 56-71 (73)
No 1
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2e-77 Score=545.02 Aligned_cols=311 Identities=57% Similarity=1.139 Sum_probs=298.7
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~ 81 (314)
++|+++||++||+++.....++.+...|+++++.+||+|.+|++||+.+..+++++++||.+||++||||++.+++.+|+
T Consensus 10 ~~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l 89 (325)
T d3dssb1 10 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL 89 (325)
T ss_dssp CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred hHHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCCcccH
Confidence 47899999999999887667888888999999999999999999998877889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021308 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
..||+|+.+|.+++..+.++++++++||.++|++||+|...++++.|+++||+|+.++.+++..+.++++++++||++||
T Consensus 90 ~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQ 169 (325)
T d3dssb1 90 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM 169 (325)
T ss_dssp HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Confidence 99999999999999888899999999999999999999998999999999999999999999878889999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021308 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
++||||+..|+.|+|+++||||+++|.+++..+..+.+++++||.+||.++|||+|||||.+|+|||||++++|.+|+..
T Consensus 170 n~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~ 249 (325)
T d3dssb1 170 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL 249 (325)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG
T ss_pred CCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999998
Q ss_pred cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhcccc
Q 021308 242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFS 312 (314)
Q Consensus 242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (314)
.++|.+++++||+.||+.+.|||+++|++.||+|||||+|++|++++++.|.++||+++||++++++++..
T Consensus 250 ~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~~~l~~~~p~~~i~~~~~~~~~~~ 320 (325)
T d3dssb1 250 HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQ 320 (325)
T ss_dssp GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCTTTSSBHHHHHHHTCC
T ss_pred ccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCCCCCCCCCCcccCCHHHHHHhccc
Confidence 89999999999999987578999999999999999999999999999999999999999999999999874
No 2
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=6.5e-75 Score=536.37 Aligned_cols=308 Identities=31% Similarity=0.560 Sum_probs=283.3
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccCCCCcccCCCCCCCc
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~ 80 (314)
.+|+++||++||+++... -+-.+...|.+++|.+||+|++|++||.. +...++++++||.+||+++|||++.+++.+|
T Consensus 51 ~~L~r~~H~~y~~~~L~~-lp~~~~~lD~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~h 129 (401)
T d2h6fb1 51 LVLQREKHFHYLKRGLRQ-LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 129 (401)
T ss_dssp CCCCHHHHHHHHHHHTTE-ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred ccccHHHHHHHHHHHHHh-CCHHhhccccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcc
Confidence 468999999999999764 33345667999999999999999999975 4446789999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcC---CCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHH
Q 021308 81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l 157 (314)
+.+||+|+++|.+++. ++.+|++++++||.++|++||||...++++.|+|++|||++++.+++..++++++++++||
T Consensus 130 la~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I 209 (401)
T d2h6fb1 130 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 209 (401)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999985 4678999999999999999999999999999999999999999999998888999999999
Q ss_pred HhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcC-CCcccCCCCCCCCchhHHHHHHHHH
Q 021308 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 158 ~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
++||++||||+..|+.|+|+++|||||++|.++++.+.++++++++||.+||.. +|||+|||||.+|+|||||++++|.
T Consensus 210 ~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~ 289 (401)
T d2h6fb1 210 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP 289 (401)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHH
T ss_pred HHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999998889999999999999976 8999999999999999999999999
Q ss_pred hhccC-------------cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCC-------------
Q 021308 237 MIDRV-------------HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYP------------- 290 (314)
Q Consensus 237 ~l~~~-------------~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~------------- 290 (314)
+|+.. .++|.+++.+||+.||+.+.|||+++|++.||+|||||+|+||++++++
T Consensus 290 lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~ 369 (401)
T d2h6fb1 290 LLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGV 369 (401)
T ss_dssp HHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSS
T ss_pred HHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHhcCCcCccCcccccccCC
Confidence 99752 1478999999999874448999999999999999999999999999752
Q ss_pred ---CCCCCCCcccCCHHHHHhcc
Q 021308 291 ---GLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 291 ---~l~~~~~~~~~~~~~~~~~~ 310 (314)
.|.++||+|+||++.|++++
T Consensus 370 ~~~~l~~~~P~~~i~~~~~~~~~ 392 (401)
T d2h6fb1 370 PENALQPTHPVYNIGPDKVIQAT 392 (401)
T ss_dssp GGGCCCCCCTTTSSCHHHHHHHH
T ss_pred cccccccCCCcccCCHHHHHHHH
Confidence 48899999999999998876
No 3
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=7.9e-74 Score=519.71 Aligned_cols=306 Identities=31% Similarity=0.552 Sum_probs=279.2
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCC---------Ccc-
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---------GGF- 71 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~d---------GGf- 71 (314)
+++.++||++|++++... -+..+...|.+++|.+||+|.+|++||+.+..+++++++||++||..+ |||
T Consensus 1 ~~f~~~kH~~y~~~~l~~-lp~~~~~~D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~ 79 (346)
T d1n4qb_ 1 LDFLRDRHVRFFQRCLQV-LPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 79 (346)
T ss_dssp CCCCHHHHHHHHHHHHHE-ECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred CcccHHHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccccCccccCcc
Confidence 478999999999998764 344566789999999999999999999877778999999999999533 344
Q ss_pred ----------------cCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhccCCCCCcccC-CCCCcccchHH
Q 021308 72 ----------------AGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY 133 (314)
Q Consensus 72 ----------------~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~d~~~ty 133 (314)
+..+++.+|+.+||+|+++|.+++. ++.+|++++.+||.++|++||||... .+++.|+|+||
T Consensus 80 gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY 159 (346)
T d1n4qb_ 80 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 159 (346)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred CcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHH
Confidence 3334567899999999999999974 67889999999999999999999754 46799999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcC----CHHHHHHHHHccC
Q 021308 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209 (314)
Q Consensus 134 ~al~~l~ll~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~----~~~~~~~~L~~~Q 209 (314)
||++++.+|+..+.++++++++||++||++||||+..|+.|+|+++|||||++|.++++.+.+ +.+++++||.+||
T Consensus 160 ~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq 239 (346)
T d1n4qb_ 160 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239 (346)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc
Confidence 999999999998889999999999999999999999999999999999999999999976433 6789999999998
Q ss_pred cCCCcccCCCCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCC
Q 021308 210 VKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 210 ~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~ 289 (314)
+|||+|||||.+|+||+||++++|.+|+..+++|.+++.+||+.||+++.|||+++|++.||+|||||+|++|+++++
T Consensus 240 --~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~ 317 (346)
T d1n4qb_ 240 --QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE 317 (346)
T ss_dssp --SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred --cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999998899999999999999876789999999999999999999999999999
Q ss_pred CCCCCCCCcccCCHHHHHhcc
Q 021308 290 PGLKPIDPAYALPVDVVNRIF 310 (314)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~ 310 (314)
++|.++||+++||++++++++
T Consensus 318 ~~l~~~~p~~~i~~~~~~~~~ 338 (346)
T d1n4qb_ 318 SGICKVHPALNVSTRTSERLR 338 (346)
T ss_dssp TTCCCEETTTTEEHHHHHHHH
T ss_pred CCCcCcCCccCCCHHHHHHHH
Confidence 999999999999999999885
No 4
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1e-43 Score=322.30 Aligned_cols=240 Identities=20% Similarity=0.341 Sum_probs=226.7
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021308 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~ 81 (314)
.+.++++.++||.++|+++|||.......+++..||+++.+|.+++....++++++++||.++|++||||...++.++++
T Consensus 58 ~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~ 137 (325)
T d3dssb1 58 HRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDT 137 (325)
T ss_dssp GGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCH
T ss_pred chHHHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccH
Confidence 56789999999999999999998877777899999999999999987777789999999999999999999988889999
Q ss_pred hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021308 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (314)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q 161 (314)
..||+|+.++.+++..+.++.+++++||.++|+.||||+..|+.|+|...|||++++|.+++..+..+.+++++||.++|
T Consensus 138 r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ 217 (325)
T d3dssb1 138 RFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQ 217 (325)
T ss_dssp HHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhC
Confidence 99999999999999877889999999999999999999999999999999999999999999888889999999999999
Q ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC-cCCCcccCCCCCCCCchhHHHHHHHHHhhcc
Q 021308 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240 (314)
Q Consensus 162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~ 240 (314)
.++|||..+|+..+|++||||+.++|.+++....+|.+++.+||+++| .+.|||+..|++.+|.++||+++++|++++.
T Consensus 218 ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~ 297 (325)
T d3dssb1 218 LPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE 297 (325)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999888889999999998886 6689999999999999999999999999986
Q ss_pred C
Q 021308 241 V 241 (314)
Q Consensus 241 ~ 241 (314)
.
T Consensus 298 ~ 298 (325)
T d3dssb1 298 E 298 (325)
T ss_dssp T
T ss_pred C
Confidence 4
No 5
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.2e-41 Score=311.74 Aligned_cols=238 Identities=19% Similarity=0.285 Sum_probs=219.7
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCHHHHHHHHHhccCCCCcccCCCCCCC
Q 021308 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (314)
Q Consensus 3 ~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~ 79 (314)
+.++++.++||.++|+++|||.....+.+++..||+||.+|.++|.. ..++++++++||.++|++||+|...++.++
T Consensus 100 ~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~ 179 (401)
T d2h6fb1 100 QIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEV 179 (401)
T ss_dssp HHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCc
Confidence 45678899999999999999988777788999999999999999963 456899999999999999999999888999
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHh
Q 021308 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~ 159 (314)
++..||+|+.++.+|+..+..+.+++++||.+||+.||||+..|+.|++..+||||+++|.+|+....++++++++||.+
T Consensus 180 D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~ 259 (401)
T d2h6fb1 180 DVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTS 259 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 99999999999999998777788999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCC-CCCCCCCCCCccchhhhHHHHHHHHHhhcC-------------CcCCHHHHHHHHHcc-CcCCCcccCCCCCCCC
Q 021308 160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPD 224 (314)
Q Consensus 160 ~q~~-dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-------------~~~~~~~~~~~L~~~-Q~~~GGf~~~~~~~~d 224 (314)
+|.+ +|||..+|+...|++|+||..++|.+++.. ..+|.+++.+||+.+ |+++|||+..|++.+|
T Consensus 260 RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD 339 (401)
T d2h6fb1 260 RQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRD 339 (401)
T ss_dssp TBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCC
T ss_pred cCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCC
Confidence 9975 899999999999999999999999998752 135899999998765 8899999999999999
Q ss_pred chhHHHHHHHHHhhcc
Q 021308 225 VCYSWWVLSSLIMIDR 240 (314)
Q Consensus 225 ~~yt~~~~~~L~~l~~ 240 (314)
.++||+++++|+++++
T Consensus 340 ~yHT~y~L~gLSl~~~ 355 (401)
T d2h6fb1 340 FYHTCYCLSGLSIAQH 355 (401)
T ss_dssp HHHHHHHHHHHHHHHE
T ss_pred ccHHHHHHHHHHhcCC
Confidence 9999999999999874
No 6
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2.6e-39 Score=292.49 Aligned_cols=238 Identities=17% Similarity=0.265 Sum_probs=211.9
Q ss_pred ccccHHHHHHHHHHcccCCCCc--------------------------cccccccchhHHHHHHHHHHHhcCC-CCccCH
Q 021308 2 GELAADKHVKYIISVEKKKDSF--------------------------ESVVMEHLRLNGAYWGLTTLDILGK-LDAVDE 54 (314)
Q Consensus 2 ~~l~~~~~~~yl~~~~~~~g~~--------------------------~~~~~~~~~~~~~~~al~~L~lLg~-~~~~~~ 54 (314)
++.++++.++|+.++|.+++.+ .....+..++..||+||.+|.+||. .+.+++
T Consensus 48 ~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr 127 (346)
T d1n4qb_ 48 DVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDK 127 (346)
T ss_dssp GGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCH
T ss_pred ccccHHHHHHHHHHHhccccccccCccccCccCcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHH
Confidence 3567899999999998644322 2222356688999999999999985 456789
Q ss_pred HHHHHHHHhccCCCCcccCC-CCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHH
Q 021308 55 EDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133 (314)
Q Consensus 55 ~~~~~~l~~~q~~dGGf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty 133 (314)
+++.+||.++|++||+|... .+.++++..||+|+.++.+|+..+.++.+++++||.+||+.||||+..|+.|+|..+||
T Consensus 128 ~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~Tf 207 (346)
T d1n4qb_ 128 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTF 207 (346)
T ss_dssp HHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHH
T ss_pred HHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHH
Confidence 99999999999999999765 46799999999999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCc----cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccC
Q 021308 134 IAICCLSILQRLDK----INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (314)
Q Consensus 134 ~al~~l~ll~~~~~----~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q 209 (314)
||+++|.+++..+. .+++++++||.++| +|||..+|+..+|++|+||+.++|.+++....+|.+++.+||+++|
T Consensus 208 CavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~ 285 (346)
T d1n4qb_ 208 CGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 285 (346)
T ss_dssp HHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHc
Confidence 99999999997533 36789999999887 8999999999999999999999999999888899999999998885
Q ss_pred -cCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021308 210 -VKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 210 -~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
...|||+.+|++.||+++||+++++|++++..
T Consensus 286 q~~~GGf~~~p~~~pD~~HT~~~l~gLsl~~~~ 318 (346)
T d1n4qb_ 286 DRLVGGFAKWPDSHPDALHAYFGICGLSLMEES 318 (346)
T ss_dssp CTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred CCCCCCcCCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999865
No 7
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=99.96 E-value=1.7e-27 Score=217.97 Aligned_cols=277 Identities=20% Similarity=0.203 Sum_probs=196.2
Q ss_pred HHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC-CccCHHHHHHHHHhccC-------------CCCcc
Q 021308 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQD-------------ESGGF 71 (314)
Q Consensus 6 ~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~-~~~~~~~~~~~l~~~q~-------------~dGGf 71 (314)
.+|+++||++.|++||+|.-. ..+.+|.|-+++.+|..-|.. +.....++++||+++|. +.|||
T Consensus 8 i~rav~~L~~~q~~dG~w~~~--~~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw 85 (352)
T d2sqca1 8 LDRAVEYLLSCQKDEGYWWGP--LISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGF 85 (352)
T ss_dssp HHHHHHHHHHHCCTTSCCCCC--ECCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCB
T ss_pred HHHHHHHHHHhcCCCCceeCC--CCCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCcc
Confidence 478999999999999998422 234678888888887766743 23457899999999983 34777
Q ss_pred cCCC--CCCCchhhhHHHHHHHHHhcCCC----cccHHHHHHHHHhccCCCCCcccC-CC--------------C----C
Q 021308 72 AGNI--GHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGD-IW--------------G----E 126 (314)
Q Consensus 72 ~~~~--~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~-~~--------------~----~ 126 (314)
++.. ...|+...|..++.+|..+...+ ...++++++||.++|++||||+.. +. + .
T Consensus 86 ~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~ 165 (352)
T d2sqca1 86 AFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDP 165 (352)
T ss_dssp CSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCC
T ss_pred ccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCC
Confidence 6643 35678888998888887765322 113678999999999999999631 10 0 0
Q ss_pred cccchHHHHHHHHHHhCCC-CccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC-CcCCHHHHHHH
Q 021308 127 VDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWW 204 (314)
Q Consensus 127 ~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~~~ 204 (314)
+....|..++.++...+.. ....++++++||+++|++||+|....+ .++...|+.++.+|..+|.. +...++++++|
T Consensus 166 ~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~ 244 (352)
T d2sqca1 166 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDW 244 (352)
T ss_dssp CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 1112234444444444432 234689999999999999999976543 45666788888888888753 23447899999
Q ss_pred HHccCcCCCcccCC----------CCCCCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCC-CCCCC--
Q 021308 205 LCERQVKSGGLNGR----------PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISD-RPDDA-- 271 (314)
Q Consensus 205 L~~~Q~~~GGf~~~----------~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~-~p~~~-- 271 (314)
|+++|++||||+.. +...+++..|.|++.+|...+.......++.++||.++|+ ++|||.. .+...
T Consensus 245 L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~~~i~ra~~~L~~~Q~-~dG~w~~~~~~g~~f 323 (352)
T d2sqca1 245 VEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQR-PDGGWDEPYYTGTGF 323 (352)
T ss_dssp HHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCC-TTSCCCCCSCCEEEE
T ss_pred HHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CCCCCCCcceecccc
Confidence 99999999999632 2234677889999999988875533335778999999999 7999985 23221
Q ss_pred C-------CHHHHHHHhhhhhc
Q 021308 272 V-------DVFHTYFGVAGLSL 286 (314)
Q Consensus 272 ~-------d~~~T~~al~~L~l 286 (314)
+ ..|-.+|.|.+|..
T Consensus 324 ~~~~~~~y~~y~~~f~~~aL~~ 345 (352)
T d2sqca1 324 PGDFYLGYTMYRHVFPTLALGR 345 (352)
T ss_dssp TTTEEEEETTHHHHHHHHHHHH
T ss_pred cccceecccccchHHHHHHHHH
Confidence 1 23446667777664
No 8
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=99.91 E-value=3.4e-23 Score=189.18 Aligned_cols=233 Identities=18% Similarity=0.130 Sum_probs=166.7
Q ss_pred CHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC-CcccHHHHHHHHHhccCC-------------CCC
Q 021308 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNE-------------DGS 118 (314)
Q Consensus 53 ~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~-------------dGg 118 (314)
.++++++||++.|++||+|.... .+.++.|.+++++|...|.. +...+.++++||.+.|.. .||
T Consensus 7 ~i~rav~~L~~~q~~dG~w~~~~--~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Gg 84 (352)
T d2sqca1 7 TLDRAVEYLLSCQKDEGYWWGPL--ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGG 84 (352)
T ss_dssp HHHHHHHHHHHHCCTTSCCCCCE--CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCceeCCC--CCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCc
Confidence 36789999999999999996543 35678899999999877732 233478999999999842 356
Q ss_pred cccC--CCCCcccchHHHHHHHHHHhCCCCc----cCHHHHHHHHHhccCCCCCCCCC-CC------------------C
Q 021308 119 FSGD--IWGEVDTRFSYIAICCLSILQRLDK----INVDKAVEYIVSCKNLDGGFGCT-PG------------------G 173 (314)
Q Consensus 119 f~~~--~~~~~d~~~ty~al~~l~ll~~~~~----~~~~~~~~~l~~~q~~dGGf~~~-p~------------------~ 173 (314)
|... ....+|...|..++.+|..+...+. ..++++++||+++||+||||+.. +. .
T Consensus 85 w~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d 164 (352)
T d2sqca1 85 FAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTD 164 (352)
T ss_dssp BCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSC
T ss_pred cccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccC
Confidence 5432 2334566666666666655544322 24678999999999999999742 11 1
Q ss_pred ccchhhhHHHHHHHHHhhcCC-cCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccCcc-cChHHHHH
Q 021308 174 ESHSGQIFCCVGALAIAGALH-HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW-INKDKLVK 251 (314)
Q Consensus 174 ~s~~~~T~~al~~L~ll~~~~-~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~~~-~~~~~~~~ 251 (314)
.+....|..++.+|...+... ...++++++||.++|++||+|.++.+. ..++.|+.++.+|..++.... ...+++++
T Consensus 165 ~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~~-~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~ 243 (352)
T d2sqca1 165 PPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALD 243 (352)
T ss_dssp CCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCCC-CcchHHHHHHHHHHhcccccchHHHHHHHH
Confidence 234455667776666655432 234899999999999999999887543 345566777888888875422 12578999
Q ss_pred HHHhhcCCCCCCcCCC----------CCCCCCHHHHHHHhhhhhccCC
Q 021308 252 FILDCQDMENGGISDR----------PDDAVDVFHTYFGVAGLSLLEY 289 (314)
Q Consensus 252 ~l~~~Q~~~~GGf~~~----------p~~~~d~~~T~~al~~L~l~~~ 289 (314)
||+++|+ ++|||... +...+++..|.+++.+|...++
T Consensus 244 ~L~~~Q~-~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~ 290 (352)
T d2sqca1 244 WVEQHQN-PDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 290 (352)
T ss_dssp HHHHTCC-TTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHhccC-CCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCC
Confidence 9999999 79999642 3345788999999999977765
No 9
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=2e-22 Score=188.51 Aligned_cols=279 Identities=13% Similarity=0.194 Sum_probs=196.6
Q ss_pred HHHHHHHHHcccCCCCccccc-c--ccchhHHHHHHHHHHHhcCCC-C---ccCHHHHHHHHHhccCC------------
Q 021308 7 DKHVKYIISVEKKKDSFESVV-M--EHLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKCQDE------------ 67 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~-~--~~~~~~~~~~al~~L~lLg~~-~---~~~~~~~~~~l~~~q~~------------ 67 (314)
.+.+.|+...+.+||.|-... . .-+.+|.|-+++.+|.-.|.. . ....+++.+||+..|..
T Consensus 73 ~~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~ 152 (448)
T d1w6ka1 73 LNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ 152 (448)
T ss_dssp HHHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred HhhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCC
Confidence 345668888999999874311 1 236789999999999877632 2 22467899999999853
Q ss_pred --CCcccCCC--CCCCchhhhHHHHHHHHHhcC-----CCcc---cHHHHHHHHHhccCCCCCcccCC------------
Q 021308 68 --SGGFAGNI--GHDPHVLYTLSAVQVLALFDK-----VDIL---DADKVSNYIVGLQNEDGSFSGDI------------ 123 (314)
Q Consensus 68 --dGGf~~~~--~~~~~~~~T~~al~~L~~l~~-----~~~~---~~~~~~~~l~~~Q~~dGgf~~~~------------ 123 (314)
.|||++.. ...|++..|..++.+|..+.. .+.+ .+.++++||.++|++||||....
T Consensus 153 ~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~ 232 (448)
T d1w6ka1 153 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN 232 (448)
T ss_dssp CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred CCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhccc
Confidence 26777643 356889999999999877631 1222 35679999999999999997321
Q ss_pred ----CC--Ccc---cchHHHHHHHHHHhCCC-C-------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHH
Q 021308 124 ----WG--EVD---TRFSYIAICCLSILQRL-D-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (314)
Q Consensus 124 ----~~--~~d---~~~ty~al~~l~ll~~~-~-------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~ 186 (314)
.+ ..| +.-|..++.+|..++.. + ...++++++||.+.|++||||....+ ......|.+++.+
T Consensus 233 ~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg-~~~~ygT~~al~a 311 (448)
T d1w6ka1 233 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEA 311 (448)
T ss_dssp CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHH
T ss_pred chhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCC-CcccHHHHHHHHH
Confidence 01 112 23355566666655421 1 12478899999999999999976644 3456678899989
Q ss_pred HHHhhcCCc-----CCHHHHHHHHHccCcCCCcccCC----------CCCCCCchhHHHHHHHHHhhccCcccChHHHHH
Q 021308 187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVK 251 (314)
Q Consensus 187 L~ll~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~~----------~~~~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~ 251 (314)
|..+|.... ..++++++||+++|++||||+.. ++..+++..|-|++.+|...+.......++.++
T Consensus 312 L~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~~~~~v~rgv~ 391 (448)
T d1w6ka1 312 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVR 391 (448)
T ss_dssp HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 988875321 23789999999999999999653 345678889999999998877554344688999
Q ss_pred HHHhhcCCCCCCcCCCCCC--CC-------CHHHHHHHhhhhhcc
Q 021308 252 FILDCQDMENGGISDRPDD--AV-------DVFHTYFGVAGLSLL 287 (314)
Q Consensus 252 ~l~~~Q~~~~GGf~~~p~~--~~-------d~~~T~~al~~L~l~ 287 (314)
||.++|+ ++|+|...+-. .| ..|.-+|-|.+|...
T Consensus 392 ~L~~~Q~-~~G~W~~~~~~g~f~~~~~l~Y~~Y~~~fpl~AL~ry 435 (448)
T d1w6ka1 392 CLLEKQL-PNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 435 (448)
T ss_dssp HHHHHCC-TTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHH
T ss_pred HHHHccC-CCCCCCCCceeeeecccceeecCCcchHHHHHHHHHH
Confidence 9999999 79999863321 11 345566666776654
No 10
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=7.7e-23 Score=191.37 Aligned_cols=211 Identities=18% Similarity=0.216 Sum_probs=159.6
Q ss_pred HHHHHHHHHHcccC--------------CCCccccccc--cchhHHHHHHHHHHHhcCC---C-----CccCHHHHHHHH
Q 021308 6 ADKHVKYIISVEKK--------------KDSFESVVME--HLRLNGAYWGLTTLDILGK---L-----DAVDEEDVISWI 61 (314)
Q Consensus 6 ~~~~~~yl~~~~~~--------------~g~~~~~~~~--~~~~~~~~~al~~L~lLg~---~-----~~~~~~~~~~~l 61 (314)
.+|+.+||+..|.. .|+|.|...+ ..++-.|.-+|.+|.++.. . ......++++||
T Consensus 127 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wL 206 (448)
T d1w6ka1 127 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 206 (448)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHH
Confidence 46888999998753 2566553322 2455567777877776542 1 112356799999
Q ss_pred HhccCCCCcccCCCC---------------------CCCchhhhHHHHHHHHHhcCC---C-----cccHHHHHHHHHhc
Q 021308 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV---D-----ILDADKVSNYIVGL 112 (314)
Q Consensus 62 ~~~q~~dGGf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~---~-----~~~~~~~~~~l~~~ 112 (314)
+++||+||||+.+.. ..+.+..|..++.+|..++.. . ...++++++||.+.
T Consensus 207 l~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~ 286 (448)
T d1w6ka1 207 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 286 (448)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHcc
Confidence 999999999986521 245677899999999887521 1 11367899999999
Q ss_pred cCCCCCcccCCCCCcccchHHHHHHHHHHhCCCC-----ccCHHHHHHHHHhccCCCCCCCCC----------CCCccch
Q 021308 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT----------PGGESHS 177 (314)
Q Consensus 113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~-----~~~~~~~~~~l~~~q~~dGGf~~~----------p~~~s~~ 177 (314)
|++||||.+. ++...++.|++++.+|..+|... ...++|+++||+++|++||||+.. ++..|++
T Consensus 287 Q~~DGsW~g~-wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~ 365 (448)
T d1w6ka1 287 QRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 365 (448)
T ss_dssp SCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred CCCCCccccc-CCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcH
Confidence 9999999765 34556777888988998887532 235789999999999999999864 3567888
Q ss_pred hhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccC
Q 021308 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 178 ~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (314)
..|.+|+.+|...+..+...++++++||+++|+++|+|.-
T Consensus 366 ~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W~~ 405 (448)
T d1w6ka1 366 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQ 405 (448)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCCCC
Confidence 9999999998877766656689999999999999999954
No 11
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=99.60 E-value=4.7e-15 Score=129.65 Aligned_cols=224 Identities=18% Similarity=0.097 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC-CcccHHHHHHHHH
Q 021308 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIV 110 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~ 110 (314)
++..+.-.+..+.++|..+++..+++++||++.|++||||+..++..+++..|..++.+|.++|.. +.....++.+||.
T Consensus 3 ~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~ 82 (271)
T d2sqca2 3 NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQ 82 (271)
T ss_dssp CTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 344567778899999987777789999999999999999999998899999999999999999842 3334789999999
Q ss_pred hccCCCCC---------------cccCC----------C-CCccc-------chHHHHHHHHHHhCCCCccCHHHHHHHH
Q 021308 111 GLQNEDGS---------------FSGDI----------W-GEVDT-------RFSYIAICCLSILQRLDKINVDKAVEYI 157 (314)
Q Consensus 111 ~~Q~~dGg---------------f~~~~----------~-~~~d~-------~~ty~al~~l~ll~~~~~~~~~~~~~~l 157 (314)
+.....+. |...+ . -..++ |.++..+..+....-.........+++|
T Consensus 83 ~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL 162 (271)
T d2sqca2 83 SQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPEL 162 (271)
T ss_dssp HTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGG
T ss_pred HcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHH
Confidence 88543221 11100 0 00111 2222222222211111122334457788
Q ss_pred HhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcCC--c---CCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHH
Q 021308 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH--H---VDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVL 232 (314)
Q Consensus 158 ~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~--~---~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~ 232 (314)
...|.+++.+....... ....+.. +.|..+.... . ..++++++||+++|++||||.+.. -.+.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i~------p~~~~~l 233 (271)
T d2sqca2 163 YETDVPPRRRGAKGGGG-WIFDALD--RALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQ------PPWFYAL 233 (271)
T ss_dssp GCCSSCCCCCCCTTCCC-HHHHHHH--HHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTSH------HHHHHHH
T ss_pred hcCCCcccccccccccc-HHHHHHH--HHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCccccC------HHHHHHH
Confidence 88888888876543321 1111221 2333333221 1 236789999999999999997531 1357899
Q ss_pred HHHHhhccCcccChHHHHHHHHh--hcCCCCCCcC
Q 021308 233 SSLIMIDRVHWINKDKLVKFILD--CQDMENGGIS 265 (314)
Q Consensus 233 ~~L~~l~~~~~~~~~~~~~~l~~--~Q~~~~GGf~ 265 (314)
.+|.++|..+-...++.+++|.+ .|. ++||+.
T Consensus 234 ~aL~~~G~~~~p~v~r~l~~l~~~~~~~-~dG~~~ 267 (271)
T d2sqca2 234 IALKILDMTQHPAFIKGWEGLELYGVEL-DYGGWM 267 (271)
T ss_dssp HHHHHTTCTTSHHHHHHHHGGGGGEEEC-TTSCEE
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHheeEc-CCCcee
Confidence 99999985421125667777765 466 789875
No 12
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=99.50 E-value=1.2e-13 Score=120.57 Aligned_cols=218 Identities=16% Similarity=0.151 Sum_probs=138.4
Q ss_pred CchhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCC-CccCHHHHHHHH
Q 021308 79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYI 157 (314)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~-~~~~~~~~~~~l 157 (314)
+|+..|...|..+..+|..+...++++++||.+.|++||||+..+++.+|+..|..+..+|.++|.. +....+++.+||
T Consensus 2 ~~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i 81 (271)
T d2sqca2 2 SNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFI 81 (271)
T ss_dssp CCTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566788889999999976666688999999999999999998888889999999999999999853 345678999999
Q ss_pred HhccCCCCC----------CCCC-----CCCc------------------cchhhhHHHHHHHHHhhcCCcCCHHHHHHH
Q 021308 158 VSCKNLDGG----------FGCT-----PGGE------------------SHSGQIFCCVGALAIAGALHHVDKDLLGWW 204 (314)
Q Consensus 158 ~~~q~~dGG----------f~~~-----p~~~------------------s~~~~T~~al~~L~ll~~~~~~~~~~~~~~ 204 (314)
++.....+. +|.. +..+ .|...++..+..+....-....+....+++
T Consensus 82 ~~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~e 161 (271)
T d2sqca2 82 QSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPE 161 (271)
T ss_dssp HHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGG
T ss_pred HHcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHH
Confidence 998543321 1111 1111 111222222211111111112334456788
Q ss_pred HHccCcCCCcccCCCCCCCCchhHH-HHHHHHHhhccCccc---ChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHH
Q 021308 205 LCERQVKSGGLNGRPEKLPDVCYSW-WVLSSLIMIDRVHWI---NKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFG 280 (314)
Q Consensus 205 L~~~Q~~~GGf~~~~~~~~d~~yt~-~~~~~L~~l~~~~~~---~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~a 280 (314)
|...|.+++.|..+.... ..+.+. .++..+..+... +. ..+++.+||++.|+ .+|||.... -.|+++
T Consensus 162 L~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~e~l~~~-~lr~~a~~~a~~wl~~~q~-~dGgwG~i~------p~~~~~ 232 (271)
T d2sqca2 162 LYETDVPPRRRGAKGGGG-WIFDALDRALHGYQKLSVH-PFRRAAEIRALDWLLERQA-GDGSWGGIQ------PPWFYA 232 (271)
T ss_dssp GGCCSSCCCCCCCTTCCC-HHHHHHHHHHHHHHHSSCC-TTHHHHHHHHHHHHHHHCC-TTSSSTTSH------HHHHHH
T ss_pred HhcCCCcccccccccccc-HHHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHHHcc-CCCCccccC------HHHHHH
Confidence 888888888887665321 112121 223323233211 22 24679999999999 799997521 247889
Q ss_pred hhhhhccCCCCCCCCCCcccCCHHHHHhc
Q 021308 281 VAGLSLLEYPGLKPIDPAYALPVDVVNRI 309 (314)
Q Consensus 281 l~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 309 (314)
+.+|..+|+ +.||.+---.+.++++
T Consensus 233 l~aL~~~G~----~~~p~v~r~l~~l~~~ 257 (271)
T d2sqca2 233 LIALKILDM----TQHPAFIKGWEGLELY 257 (271)
T ss_dssp HHHHHHTTC----TTSHHHHHHHHGGGGG
T ss_pred HHHHHhcCC----CCCHHHHHHHHHHHHh
Confidence 999999987 3477654444444433
No 13
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.06 E-value=3.2e-09 Score=94.14 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCC---CcccHHHHHHHHHhccCCCCCcccCCC------
Q 021308 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIW------ 124 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~------ 124 (314)
+++.++-|.++|++||||+++++.+++.+.|.+++.+|..+... +...+.+...|+.+.|.++|+|.....
T Consensus 54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~ 133 (326)
T d1hzfa_ 54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 133 (326)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHH
Confidence 45567778899999999999999999999999999999988643 333467788999999999999864321
Q ss_pred ------CCcccchHHHHHHHHHHhCCCC------------ccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHH
Q 021308 125 ------GEVDTRFSYIAICCLSILQRLD------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (314)
Q Consensus 125 ------~~~d~~~ty~al~~l~ll~~~~------------~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~ 186 (314)
...++..+-.++.+|...+... ...+.++++||.+....+ + .+.........+
T Consensus 134 ~~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~--~-------~~~y~~a~~a~a 204 (326)
T d1hzfa_ 134 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG--L-------LGAHAAAITAYA 204 (326)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT--C-------CCHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcc--c-------CCHHHHHHHHHH
Confidence 1112222323344444333211 112567888987765432 0 111111222233
Q ss_pred HHHhhcCCcCCHHHHHHHHHccCcCC-CcccCC--CCC----------------------CCCchhHHHHHHHHHhhccC
Q 021308 187 LAIAGALHHVDKDLLGWWLCERQVKS-GGLNGR--PEK----------------------LPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 187 L~ll~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~--~~~----------------------~~d~~yt~~~~~~L~~l~~~ 241 (314)
|.+.+.. ......+..-+.+....+ ++.-.. .+. ..+++.|-+++-++......
T Consensus 205 l~~~~~~-~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~~~ 283 (326)
T d1hzfa_ 205 LTLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK 283 (326)
T ss_dssp HHHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcCCC
Confidence 4444432 111222333333333222 221110 000 01234444444443332211
Q ss_pred cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhh
Q 021308 242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLS 285 (314)
Q Consensus 242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~ 285 (314)
.-..+.+++||.+-|+ .+|||.. ...|.+||-||+
T Consensus 284 -~~~~~~~~~WL~~qr~-~~Ggw~S-------TQdT~~al~AL~ 318 (326)
T d1hzfa_ 284 -AEMADQASAWLTRQGS-FQGGFRS-------TQDTVIALDALS 318 (326)
T ss_dssp -SHHHHHHHHHHHHHTT-STTCSCS-------HHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHhcc-CCCCCcc-------HHHHHHHHHHHH
Confidence 1224779999999888 7899974 567888887775
No 14
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.91 E-value=2.5e-08 Score=88.19 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=122.5
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCC---CCccCHHHHHHHHHhccCCCCcccCCCC-------
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK---LDAVDEEDVISWILKCQDESGGFAGNIG------- 76 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~---~~~~~~~~~~~~l~~~q~~dGGf~~~~~------- 76 (314)
+++++=|.+.|++||||.+|..+..++|.|-|++.+|..+.+ .++....+.+.|+++.|.++|+|.....
T Consensus 55 ~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~~ 134 (326)
T d1hzfa_ 55 QKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ 134 (326)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHHh
Confidence 445555667899999999998888899999999999998753 3445677889999999999999865321
Q ss_pred -----CCCchhhhHHHHHHHHHhcCC--Cc----------ccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHH
Q 021308 77 -----HDPHVLYTLSAVQVLALFDKV--DI----------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL 139 (314)
Q Consensus 77 -----~~~~~~~T~~al~~L~~l~~~--~~----------~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l 139 (314)
....+..|.+++.+|...+.. .. ..+.++++||.+...++ ..++.....+..+|
T Consensus 135 ~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~---------~~~~y~~a~~a~al 205 (326)
T d1hzfa_ 135 GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG---------LLGAHAAAITAYAL 205 (326)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcc---------cCCHHHHHHHHHHH
Confidence 122344566667777665421 10 12456788887654321 01222222233344
Q ss_pred HHhCCCCccCHHHHHHHHHhccCCCC-C--CCCCCC----------------------CccchhhhHHHHHHHHHhhcCC
Q 021308 140 SILQRLDKINVDKAVEYIVSCKNLDG-G--FGCTPG----------------------GESHSGQIFCCVGALAIAGALH 194 (314)
Q Consensus 140 ~ll~~~~~~~~~~~~~~l~~~q~~dG-G--f~~~p~----------------------~~s~~~~T~~al~~L~ll~~~~ 194 (314)
.+.+.. ......+..-+.+....++ + |....+ ..+.+..|..++-++.... .+
T Consensus 206 ~~~~~~-~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~-~~ 283 (326)
T d1hzfa_ 206 TLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE-GK 283 (326)
T ss_dssp HHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT-CS
T ss_pred HHcCCc-hHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcC-CC
Confidence 555542 2222223333444333222 2 111111 0113445656654443322 23
Q ss_pred cCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHH
Q 021308 195 HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 236 (314)
Q Consensus 195 ~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~ 236 (314)
....+++++||.++++.+|||.. +-.|.+++.+|.
T Consensus 284 ~~~~~~~~~WL~~qr~~~Ggw~S-------TQdT~~al~AL~ 318 (326)
T d1hzfa_ 284 AEMADQASAWLTRQGSFQGGFRS-------TQDTVIALDALS 318 (326)
T ss_dssp SHHHHHHHHHHHHHTTSTTCSCS-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCCCCcc-------HHHHHHHHHHHH
Confidence 33467899999999999999953 244555555553
No 15
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.69 E-value=4.5e-07 Score=78.47 Aligned_cols=208 Identities=18% Similarity=0.163 Sum_probs=115.1
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCccc----HHHHHHHHHhccCCCCCcccCCC-----
Q 021308 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD----ADKVSNYIVGLQNEDGSFSGDIW----- 124 (314)
Q Consensus 54 ~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~----~~~~~~~l~~~Q~~dGgf~~~~~----- 124 (314)
.++.++-|.++|++||||+.+++..++.+.|.+++..|..+.....++ .+....|+.+.|..+|.|.....
T Consensus 56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~ 135 (294)
T d1c3da_ 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 135 (294)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccccchHhHHH
Confidence 355677788899999999999988999999999999999886542222 34455667778888888753210
Q ss_pred --------CCcccchHHHHHHHHHHhCCCC-----c--cCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHH
Q 021308 125 --------GEVDTRFSYIAICCLSILQRLD-----K--INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (314)
Q Consensus 125 --------~~~d~~~ty~al~~l~ll~~~~-----~--~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~l 189 (314)
...+...+..++.+|...+... . ..+.++.+|+.+..... ...++ -++++..+
T Consensus 136 ~~~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~~~~~-----------~~~~~-la~~~~~l 203 (294)
T d1c3da_ 136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL-----------QRSYT-VAIAGYAL 203 (294)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHHGGGC-----------CCHHH-HHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcc-----------cCHHH-HHHHHHHH
Confidence 0111222333444444433211 1 12456777776554221 11111 22222222
Q ss_pred hhcCCcCCHHHHHHHHHccCcCCCcccCCCCC-CCCchhHHHHHHHHHhhccCcccChHHHHHHHHhhcCCCCCCcCCCC
Q 021308 190 AGALHHVDKDLLGWWLCERQVKSGGLNGRPEK-LPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRP 268 (314)
Q Consensus 190 l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~-~~d~~yt~~~~~~L~~l~~~~~~~~~~~~~~l~~~Q~~~~GGf~~~p 268 (314)
.... ....+ ...-+... ..++.+-..+.. ..++.-+-+++.++...+.. ...+++++||.+-++ ..|||..
T Consensus 204 ~~~~-~~~~~-~~~~~~~~-~~~~~~w~~~~~~~~~ietta~alla~~~~~~~--~~~~~~~~wL~~qr~-~~g~w~S-- 275 (294)
T d1c3da_ 204 AQMG-RLKGP-LLNKFLTT-AKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRY-YGGGYGS-- 275 (294)
T ss_dssp HHTT-CCCHH-HHHHHHHH-SBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHHTTC-CCCSTTC--
T ss_pred HHhH-HHHHH-HHHHHHHh-cccCCCCCCCCCccchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccc-CCCCCcc--
Confidence 2211 12222 22333222 223444322221 22344444455554444332 345779999999777 6888873
Q ss_pred CCCCCHHHHHHHhhhhhc
Q 021308 269 DDAVDVFHTYFGVAGLSL 286 (314)
Q Consensus 269 ~~~~d~~~T~~al~~L~l 286 (314)
...|.+||-+|+-
T Consensus 276 -----Tq~T~~al~AL~~ 288 (294)
T d1c3da_ 276 -----TQATFMVFQALAQ 288 (294)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 6789999888864
No 16
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}
Probab=98.61 E-value=1.2e-07 Score=85.51 Aligned_cols=167 Identities=17% Similarity=0.118 Sum_probs=96.4
Q ss_pred cHHHHHHHHHhccCCCCCcccCCC--------------------------------------CCcccchHHHHHHHHHHh
Q 021308 101 DADKVSNYIVGLQNEDGSFSGDIW--------------------------------------GEVDTRFSYIAICCLSIL 142 (314)
Q Consensus 101 ~~~~~~~~l~~~Q~~dGgf~~~~~--------------------------------------~~~d~~~ty~al~~l~ll 142 (314)
...++.+.|...|+++|||..+.. +..|-..|...+..|+.+
T Consensus 82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~ 161 (408)
T d1r76a_ 82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV 161 (408)
T ss_dssp HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence 356789999999999999964210 112334467777766655
Q ss_pred CCC--C------ccCHHHHHHHHHhccCCCCCCCCC-CCCc---cch----hhhHHHHHHHHHhhcC-Cc---C------
Q 021308 143 QRL--D------KINVDKAVEYIVSCKNLDGGFGCT-PGGE---SHS----GQIFCCVGALAIAGAL-HH---V------ 196 (314)
Q Consensus 143 ~~~--~------~~~~~~~~~~l~~~q~~dGGf~~~-p~~~---s~~----~~T~~al~~L~ll~~~-~~---~------ 196 (314)
-.. . ...+.++++||++.|++||||... |... .|. ..+..++-.|..+... .. +
T Consensus 162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~ 241 (408)
T d1r76a_ 162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence 221 1 124678999999999999999754 2211 110 1122333334333221 11 1
Q ss_pred ----CHHHHHHHHHccCcCCCcccCCCCC----------------CCCc--hhHHHHHHHHHhhccCcc---cChHHHHH
Q 021308 197 ----DKDLLGWWLCERQVKSGGLNGRPEK----------------LPDV--CYSWWVLSSLIMIDRVHW---INKDKLVK 251 (314)
Q Consensus 197 ----~~~~~~~~L~~~Q~~~GGf~~~~~~----------------~~d~--~yt~~~~~~L~~l~~~~~---~~~~~~~~ 251 (314)
.++++++||++.|..+||+.++.+. .+-+ ..|.+++..|--+.+... ..+++++.
T Consensus 242 r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~ 321 (408)
T d1r76a_ 242 RALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA 321 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence 2578999999999999998655432 1222 245555555444443221 12678999
Q ss_pred HHHhhcCCCCCCcCCCC
Q 021308 252 FILDCQDMENGGISDRP 268 (314)
Q Consensus 252 ~l~~~Q~~~~GGf~~~p 268 (314)
||.++|. .+|++.+.+
T Consensus 322 Wl~~~~~-~~~~~~~~~ 337 (408)
T d1r76a_ 322 WLNTSVI-RDRAWVKSD 337 (408)
T ss_dssp HHHHSCC-CC-------
T ss_pred HHHhccc-CCceeeecC
Confidence 9999998 688886643
No 17
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}
Probab=98.60 E-value=2.4e-07 Score=83.47 Aligned_cols=163 Identities=16% Similarity=0.062 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHhccCCCCcccCCCC--------------------------------------CCCchhhhHHHHHHHHH
Q 021308 52 VDEEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLAL 93 (314)
Q Consensus 52 ~~~~~~~~~l~~~q~~dGGf~~~~~--------------------------------------~~~~~~~T~~al~~L~~ 93 (314)
....++.+.|++.|+++|||.-.-. ...+-..|..++..|..
T Consensus 81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~ 160 (408)
T d1r76a_ 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHH
Confidence 3567899999999999999963110 01122348888888877
Q ss_pred hcC---CC-----cccHHHHHHHHHhccCCCCCcccCC-CCC--------cccchHHHHHHHHHHhC----CC---Cc--
Q 021308 94 FDK---VD-----ILDADKVSNYIVGLQNEDGSFSGDI-WGE--------VDTRFSYIAICCLSILQ----RL---DK-- 147 (314)
Q Consensus 94 l~~---~~-----~~~~~~~~~~l~~~Q~~dGgf~~~~-~~~--------~d~~~ty~al~~l~ll~----~~---~~-- 147 (314)
+-. .. ....+++++||.+.|++||||.... ... +| ..+--++.+|..+. .. +.
T Consensus 161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND-~~m~~~l~~l~~~~~~~~~~~~~~~~~ 239 (408)
T d1r76a_ 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAI 239 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred HHHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCc-hHHHHHHHHHHHHHHhccccccCCHHH
Confidence 631 11 1135689999999999999997532 111 11 11112333333221 11 11
Q ss_pred -----cCHHHHHHHHHhccCCCCCC----CCC--CCC---------c-c--chhhhHHHHHHHHHhhcCCcC-----CHH
Q 021308 148 -----INVDKAVEYIVSCKNLDGGF----GCT--PGG---------E-S--HSGQIFCCVGALAIAGALHHV-----DKD 199 (314)
Q Consensus 148 -----~~~~~~~~~l~~~q~~dGGf----~~~--p~~---------~-s--~~~~T~~al~~L~ll~~~~~~-----~~~ 199 (314)
..++++++||+++|.++||+ +.. +.. | + ....|...+. .|+...++. .++
T Consensus 240 r~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~--~LM~~~~ps~~~~~aI~ 317 (408)
T d1r76a_ 240 RTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILL--FLMEIEAPSDAVKQAIR 317 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH--HHTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHH--HHHhCCCCChhHHHHHH
Confidence 23678999999999999984 321 110 1 1 1123333333 333332221 378
Q ss_pred HHHHHHHccCcCCCcccC
Q 021308 200 LLGWWLCERQVKSGGLNG 217 (314)
Q Consensus 200 ~~~~~L~~~Q~~~GGf~~ 217 (314)
+++.||.+.|..++.|..
T Consensus 318 ~av~Wl~~~~~~~~~~~~ 335 (408)
T d1r76a_ 318 GGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHHSCCCC-----
T ss_pred HHHHHHHhcccCCceeee
Confidence 899999999999988854
No 18
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.51 E-value=4.6e-06 Score=71.89 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=114.3
Q ss_pred HHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCC---CccCH-HHHHHHHHhccCCCCcccCCCC------
Q 021308 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDE-EDVISWILKCQDESGGFAGNIG------ 76 (314)
Q Consensus 7 ~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~---~~~~~-~~~~~~l~~~q~~dGGf~~~~~------ 76 (314)
+++++=|.+.|++||||.+|..+..++|.|-|++..|..+.+. ++... +....++.+.|..+|-|-....
T Consensus 57 ~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~ 136 (294)
T d1c3da_ 57 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 136 (294)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccccchHhHHHH
Confidence 4455556677999999999988888999999999999987643 22223 3344455667777776643110
Q ss_pred -------CCCchhhhHHHHHHHHHhcCC-----Ccc--cHHHHHHHHHhccCCCCCcccCCCCCcccchHHH-HHHHHHH
Q 021308 77 -------HDPHVLYTLSAVQVLALFDKV-----DIL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICCLSI 141 (314)
Q Consensus 77 -------~~~~~~~T~~al~~L~~l~~~-----~~~--~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~~l~l 141 (314)
.......|.+++.+|...+.. ..+ .+.++.+|+...... ....|. ++....+
T Consensus 137 ~~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~~~~-------------~~~~~~la~~~~~l 203 (294)
T d1c3da_ 137 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN-------------LQRSYTVAIAGYAL 203 (294)
T ss_dssp GGGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhc-------------ccCHHHHHHHHHHH
Confidence 122345566667677665421 111 245566776553321 111221 2222222
Q ss_pred hCCCCccCHHHHHHHHHhccCCCCCCCCCCCCc-cchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCC
Q 021308 142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE 220 (314)
Q Consensus 142 l~~~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~-s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~ 220 (314)
... ..... ...+-+... ..++.+-...+.. ++...|..++.+ ++...+....+++++||.+.+..+|||..
T Consensus 204 ~~~-~~~~~-~~~~~~~~~-~~~~~~w~~~~~~~~~ietta~alla--~~~~~~~~~~~~~~~wL~~qr~~~g~w~S--- 275 (294)
T d1c3da_ 204 AQM-GRLKG-PLLNKFLTT-AKDKNRWEDPGKQLYNVEATSYALLA--LLQLKDFDFVPPVVRWLNEQRYYGGGYGS--- 275 (294)
T ss_dssp HHT-TCCCH-HHHHHHHHH-SBTTTBCCCSSCHHHHHHHHHHHHHH--HHHTTCTTTHHHHHHHHHHTTCCCCSTTC---
T ss_pred HHh-HHHHH-HHHHHHHHh-cccCCCCCCCCCccchHHHHHHHHHH--HHhcCChhhHHHHHHHHHHcccCCCCCcc---
Confidence 211 11122 222332222 2455554333322 334445555544 44444455678899999998888899853
Q ss_pred CCCCchhHHHHHHHHHh
Q 021308 221 KLPDVCYSWWVLSSLIM 237 (314)
Q Consensus 221 ~~~d~~yt~~~~~~L~~ 237 (314)
+-.|.+++.+|..
T Consensus 276 ----Tq~T~~al~AL~~ 288 (294)
T d1c3da_ 276 ----TQATFMVFQALAQ 288 (294)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 3557777777654
No 19
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.41 E-value=4.7e-07 Score=77.53 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=74.9
Q ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHhccCCCCCCCCCCCCccchhhhHHHHHHHHHhhcC-CcCCHHHHHHHHHccCcC
Q 021308 134 IAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVK 211 (314)
Q Consensus 134 ~al~~l~ll~~-~~~~~~~~~~~~l~~~q~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~-~~~~~~~~~~~L~~~Q~~ 211 (314)
..+.++.++|. .+.+..+++++||.++|++||||+..++..++...|.-+..+|.++|.. +.....++.+||+++
T Consensus 8 ~~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~--- 84 (279)
T d1w6ka2 8 GLLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK--- 84 (279)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT---
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC---
Confidence 44667888886 3455678999999999999999999999999999999999999999863 334478999999996
Q ss_pred CCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021308 212 SGGLNGRPEKLPDVCYSWWVLSSLIMIDRV 241 (314)
Q Consensus 212 ~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~ 241 (314)
||....+ .|.=.-|+++|..
T Consensus 85 -GG~~~~~---------~~~k~~La~~g~~ 104 (279)
T d1w6ka2 85 -GGAVAIP---------SWGKFWLAVLNVY 104 (279)
T ss_dssp -TCGGGCC---------HHHHHHHHHTTSS
T ss_pred -CCccccc---------hHHHHHHHHcCcc
Confidence 7776554 2444556777754
No 20
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}
Probab=98.40 E-value=1.3e-07 Score=82.40 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHHHHHhccCCCCcccCC--------CC---CCC--chhhhHHHHHHHHHhcC---CC--cccHHHHHHHHHhccCCCC
Q 021308 56 DVISWILKCQDESGGFAGN--------IG---HDP--HVLYTLSAVQVLALFDK---VD--ILDADKVSNYIVGLQNEDG 117 (314)
Q Consensus 56 ~~~~~l~~~q~~dGGf~~~--------~~---~~~--~~~~T~~al~~L~~l~~---~~--~~~~~~~~~~l~~~Q~~dG 117 (314)
+..++|++.|+++|||+-. +. ..+ +-..|..++..|..+.. .. +....++++||.+.|.+||
T Consensus 27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG 106 (324)
T d1gxma_ 27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 106 (324)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence 4678999999999999721 10 111 33447777777766531 11 1246789999999999999
Q ss_pred CcccC-CCCCc-ccchHHH---HHHHHHHhC-----C-------CC-------ccCHHHHHHHHHhccCCCCCC----CC
Q 021308 118 SFSGD-IWGEV-DTRFSYI---AICCLSILQ-----R-------LD-------KINVDKAVEYIVSCKNLDGGF----GC 169 (314)
Q Consensus 118 gf~~~-~~~~~-d~~~ty~---al~~l~ll~-----~-------~~-------~~~~~~~~~~l~~~q~~dGGf----~~ 169 (314)
||... |.... ....||. -+.++.+|. . .+ ...++|+++||+++|-++||| +.
T Consensus 107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~ 186 (324)
T d1gxma_ 107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA 186 (324)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence 99753 22110 0001111 112222221 1 01 123578999999999999884 32
Q ss_pred C--CCC---------c--c-chhhhHHHHHHHHHhhcCCcCC----HHHHHHHHHccCcCCCcc
Q 021308 170 T--PGG---------E--S-HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQVKSGGL 215 (314)
Q Consensus 170 ~--p~~---------~--s-~~~~T~~al~~L~ll~~~~~~~----~~~~~~~L~~~Q~~~GGf 215 (314)
. +.. | | ....|...+. .++......+ ++.++.|+.+.+....|+
T Consensus 187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~--~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~ 248 (324)
T d1gxma_ 187 QHGALDYQPKKARAYELESLSGSESVGVLA--FLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGY 248 (324)
T ss_dssp EECTTTCCBCCCSTTCCSSEETTTHHHHHH--HHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEE
T ss_pred ccCcccccccccccccChhhhhhhHHHHHH--HHhhcCCcHHHHHHHHHHHHHHHhchhcccce
Confidence 1 111 1 1 1122333333 3333332222 577889999988776666
No 21
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}
Probab=98.28 E-value=2e-07 Score=81.28 Aligned_cols=161 Identities=15% Similarity=0.103 Sum_probs=93.2
Q ss_pred HHHHHHhccCCCCCcccCC--------C-----CCcccchHHHHHHHHHHhCCC--C---ccCHHHHHHHHHhccCCCCC
Q 021308 105 VSNYIVGLQNEDGSFSGDI--------W-----GEVDTRFSYIAICCLSILQRL--D---KINVDKAVEYIVSCKNLDGG 166 (314)
Q Consensus 105 ~~~~l~~~Q~~dGgf~~~~--------~-----~~~d~~~ty~al~~l~ll~~~--~---~~~~~~~~~~l~~~q~~dGG 166 (314)
..++|.+.|+++|||..+. . +..|-..|..++..|+.+... . ...+.++++||+..|++|||
T Consensus 28 ~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nGG 107 (324)
T d1gxma_ 28 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 107 (324)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred hhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCCC
Confidence 4678888999999997321 1 113545566666666555321 1 23567899999999999999
Q ss_pred CCCC-CCCc-cchhhhH---HHHHHHHHhh-----cC----CcC----------CHHHHHHHHHccCcCCCcccCCCCC-
Q 021308 167 FGCT-PGGE-SHSGQIF---CCVGALAIAG-----AL----HHV----------DKDLLGWWLCERQVKSGGLNGRPEK- 221 (314)
Q Consensus 167 f~~~-p~~~-s~~~~T~---~al~~L~ll~-----~~----~~~----------~~~~~~~~L~~~Q~~~GGf~~~~~~- 221 (314)
|+.. |... -+...|| .-+.+|.++. .. ... .++++++||++.|..+|||-++.+-
T Consensus 108 Wpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~Q 187 (324)
T d1gxma_ 108 LPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQ 187 (324)
T ss_dssp CBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSE
T ss_pred ccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhhc
Confidence 9875 3221 1111222 1112222221 10 011 2578999999999999998654431
Q ss_pred ---------------CCC--chhHHHHHHHHHhhccCc-cc-ChHHHHHHHHhhcCCCCCCcCC
Q 021308 222 ---------------LPD--VCYSWWVLSSLIMIDRVH-WI-NKDKLVKFILDCQDMENGGISD 266 (314)
Q Consensus 222 ---------------~~d--~~yt~~~~~~L~~l~~~~-~~-~~~~~~~~l~~~Q~~~~GGf~~ 266 (314)
.+- ...|.+++..|-.+.... .+ ..++++.|+.+++. ..+|+..
T Consensus 188 hd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~-~~~~~~~ 250 (324)
T d1gxma_ 188 HGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT-YLEGYTY 250 (324)
T ss_dssp ECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT-SEEEEEE
T ss_pred cCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchh-cccceee
Confidence 122 234555555444322110 01 24778899999887 5677654
No 22
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.23 E-value=1.3e-06 Score=74.73 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHHhcCC-CCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcC-CCcccHHHHHHHHHhc
Q 021308 39 GLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGL 112 (314)
Q Consensus 39 al~~L~lLg~-~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~ 112 (314)
-+.+|.++|. .+.+.++++++||.++|++||||+...+..+++..|..|..+|.++|. .+.....++.+||.+.
T Consensus 9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~ 84 (279)
T d1w6ka2 9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK 84 (279)
T ss_dssp HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 3467778885 455678999999999999999999999889999999999999999985 2344578899999884
No 23
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}
Probab=71.90 E-value=17 Score=30.46 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCC--CCC-----cccchHHHHHHHHHHhCCC--CccCHH
Q 021308 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI--WGE-----VDTRFSYIAICCLSILQRL--DKINVD 151 (314)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~--~~~-----~d~~~ty~al~~l~ll~~~--~~~~~~ 151 (314)
+..+..++.+|..+|..+ ..++.++||.+.|+++|.+...+ .+. .-...+-+.+.++..+... ....++
T Consensus 55 ~RDaa~~~~al~~~G~~~--~a~~~l~~l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~ 132 (397)
T d1lf6a1 55 SRDLYHVANAFIAAGDVD--SANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVK 132 (397)
T ss_dssp HHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHH
T ss_pred HhhHHHHHHHHHHcCCHH--HHHHHHHHHHHHhcccCCCCCCCCcCCCccccCCCCchHHHHHHHHHHHHhcchhHHHHH
Confidence 567777778887777532 36789999999999998875432 111 1112222333333433331 234678
Q ss_pred HHHHHHHhccC
Q 021308 152 KAVEYIVSCKN 162 (314)
Q Consensus 152 ~~~~~l~~~q~ 162 (314)
++++||....+
T Consensus 133 ~~~~~l~~~~~ 143 (397)
T d1lf6a1 133 PLADFIIKIGP 143 (397)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHhCC
Confidence 89999988754
No 24
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}
Probab=55.53 E-value=20 Score=30.11 Aligned_cols=153 Identities=13% Similarity=-0.000 Sum_probs=71.5
Q ss_pred HHHHHHhcCCCC-ccCHHHHHHHHHhccCCCCcccCCCC--C-----CCchhhhHHHHHHHHHhcC----CCccc-HHHH
Q 021308 39 GLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIG--H-----DPHVLYTLSAVQVLALFDK----VDILD-ADKV 105 (314)
Q Consensus 39 al~~L~lLg~~~-~~~~~~~~~~l~~~q~~dGGf~~~~~--~-----~~~~~~T~~al~~L~~l~~----~~~~~-~~~~ 105 (314)
.+....+.|... ......+.+.|.+.-++.+|+....+ . ...+..+++++..|..++. ..-.+ ..+.
T Consensus 97 ~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~~~~tgd~~y~~~A~~h 176 (377)
T d2d5ja1 97 AKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAH 176 (377)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCcCCCccccCCCCCCCCCCccchhhhhhhHHHHHHHHHhcCCHhHHHHHHHH
Confidence 344555566432 12234566778777677777754321 1 1234455566666654432 11111 1222
Q ss_pred HHH-HHhccCCCCCccc----CC-----------CCC-cc---cchHHHHHHHHHHh----CCCCc-cCHHHHHHHHHhc
Q 021308 106 SNY-IVGLQNEDGSFSG----DI-----------WGE-VD---TRFSYIAICCLSIL----QRLDK-INVDKAVEYIVSC 160 (314)
Q Consensus 106 ~~~-l~~~Q~~dGgf~~----~~-----------~~~-~d---~~~ty~al~~l~ll----~~~~~-~~~~~~~~~l~~~ 160 (314)
..+ ++.++++|||-.. ++ .+. .+ .|.--|++.++..+ +.... ...+++.+|++..
T Consensus 177 ~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~~~l~~a~~~a~~~l~~ 256 (377)
T d2d5ja1 177 ALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLAR 256 (377)
T ss_dssp HHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCeEEEEEecCCCCcccCCCCCCCCCCcchHhhchHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 333 4446777765321 00 011 11 12233444444432 22111 1235788999999
Q ss_pred cCCCCCCCC---CCC---CccchhhhHHHHHHHHHhh
Q 021308 161 KNLDGGFGC---TPG---GESHSGQIFCCVGALAIAG 191 (314)
Q Consensus 161 q~~dGGf~~---~p~---~~s~~~~T~~al~~L~ll~ 191 (314)
+.+||-+-. .|+ ..-+...+.++..+|..+.
T Consensus 257 ~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~ 293 (377)
T d2d5ja1 257 VPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIA 293 (377)
T ss_dssp CCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccccccCCCCCCCCcchHHHHHHHHHHHH
Confidence 988875432 232 2224445555555554443
No 25
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}
Probab=54.21 E-value=44 Score=27.89 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhcc-CCCCcccCCC---C----CCCchhhhHHHHHHHHHhcCCC----
Q 021308 31 LRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNI---G----HDPHVLYTLSAVQVLALFDKVD---- 98 (314)
Q Consensus 31 ~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q-~~dGGf~~~~---~----~~~~~~~T~~al~~L~~l~~~~---- 98 (314)
.-++.+.+++.+|..+|.. ...++.++||.+.| +++|.|.... + .......|...+.++..+....
T Consensus 56 ~W~RDaa~~~~al~~~G~~--~~a~~~~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~ 133 (413)
T d1ulva1 56 VWARDMYQSVTALLAAGDE--EAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFY 133 (413)
T ss_dssp BCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHH
T ss_pred ecHhhHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhCCCCccccccccCCCcCCCcCccchHHHHHHHHHHHhhhcchHH
Confidence 4567788899999989864 35788999998877 5677664321 1 1223444555555555554321
Q ss_pred cccHHHHHHHHHhccC
Q 021308 99 ILDADKVSNYIVGLQN 114 (314)
Q Consensus 99 ~~~~~~~~~~l~~~Q~ 114 (314)
..-++++++|+...-.
T Consensus 134 ~~~i~~a~~~l~~~~~ 149 (413)
T d1ulva1 134 RNELKPAADYLVAAGP 149 (413)
T ss_dssp HHTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 1136788999887543
No 26
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}
Probab=50.29 E-value=37 Score=28.16 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCC---C----CCCchhhhHHHHHHHHHhcCCC--cccH
Q 021308 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNI---G----HDPHVLYTLSAVQVLALFDKVD--ILDA 102 (314)
Q Consensus 32 ~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~---~----~~~~~~~T~~al~~L~~l~~~~--~~~~ 102 (314)
-++.+.+++.+|..+|.. ...++.++|+.+.|+++|.+...+ | ..+....+...+.++......+ ..-+
T Consensus 54 W~RDaa~~~~al~~~G~~--~~a~~~l~~l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i 131 (397)
T d1lf6a1 54 WSRDLYHVANAFIAAGDV--DSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLV 131 (397)
T ss_dssp CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTH
T ss_pred cHhhHHHHHHHHHHcCCH--HHHHHHHHHHHHHhcccCCCCCCCCcCCCccccCCCCchHHHHHHHHHHHHhcchhHHHH
Confidence 456788888888888853 347789999999999888764332 1 1233444444455555443321 1236
Q ss_pred HHHHHHHHhccC
Q 021308 103 DKVSNYIVGLQN 114 (314)
Q Consensus 103 ~~~~~~l~~~Q~ 114 (314)
+++++||.....
T Consensus 132 ~~~~~~l~~~~~ 143 (397)
T d1lf6a1 132 KPLADFIIKIGP 143 (397)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhCC
Confidence 788999887543
No 27
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}
Probab=28.72 E-value=1.5e+02 Score=24.33 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=48.6
Q ss_pred chhhhHHHHHHHHHhcCCCcccHHHHHHHHHhcc-CCCCCcccC--CCCC-----cccchHHHHHHHHHHhCCCC----c
Q 021308 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGD--IWGE-----VDTRFSYIAICCLSILQRLD----K 147 (314)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q-~~dGgf~~~--~~~~-----~d~~~ty~al~~l~ll~~~~----~ 147 (314)
-+..+.+++.+|..+|..+ ..++.++||.+.| .++|.|... ..+. .-...+-..+.++..+.... .
T Consensus 57 W~RDaa~~~~al~~~G~~~--~a~~~~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~ 134 (413)
T d1ulva1 57 WARDMYQSVTALLAAGDEE--AAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYR 134 (413)
T ss_dssp CHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHH
T ss_pred cHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHHhhCCCCccccccccCCCcCCCcCccchHHHHHHHHHHHhhhcchHHH
Confidence 3577788888888887532 4678899998877 468887532 1111 11222323333444444422 2
Q ss_pred cCHHHHHHHHHhccC
Q 021308 148 INVDKAVEYIVSCKN 162 (314)
Q Consensus 148 ~~~~~~~~~l~~~q~ 162 (314)
..++++++||...-.
T Consensus 135 ~~i~~a~~~l~~~~~ 149 (413)
T d1ulva1 135 NELKPAADYLVAAGP 149 (413)
T ss_dssp HTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCC
Confidence 457889999988653
No 28
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.16 E-value=3.2 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.4
Q ss_pred HHHhccCCCCCccc
Q 021308 108 YIVGLQNEDGSFSG 121 (314)
Q Consensus 108 ~l~~~Q~~dGgf~~ 121 (314)
||-..|++||.|..
T Consensus 10 ~i~atqRpDGtWRK 23 (33)
T d1rk8c_ 10 FIPATKRPDGTWRK 23 (33)
T ss_dssp EECCEECTTSCEEC
T ss_pred EeccccCCCCcccc
Confidence 56678999999964
No 29
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.15 E-value=41 Score=20.96 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.7
Q ss_pred CHHHHHHHHHhccCCC
Q 021308 149 NVDKAVEYIVSCKNLD 164 (314)
Q Consensus 149 ~~~~~~~~l~~~q~~d 164 (314)
+++++++||++.+.+.
T Consensus 56 n~e~A~~~Ll~~~~ps 71 (73)
T d1vg5a_ 56 DLTVAVEILMSQSGPS 71 (73)
T ss_dssp CHHHHHHHHHTCSCSS
T ss_pred CHHHHHHHHHhCCCCC
Confidence 7999999999988653
No 30
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1 [TaxId: 28214]}
Probab=23.76 E-value=1.1e+02 Score=25.01 Aligned_cols=11 Identities=73% Similarity=1.035 Sum_probs=7.9
Q ss_pred hccCCCCCccc
Q 021308 111 GLQNEDGSFSG 121 (314)
Q Consensus 111 ~~Q~~dGgf~~ 121 (314)
....+||++..
T Consensus 222 ~qi~~DG~lp~ 232 (351)
T d1qaza_ 222 GLINEDGSFVH 232 (351)
T ss_dssp TTBCTTSCBTT
T ss_pred HhccCCCCCch
Confidence 35678999854
No 31
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=21.61 E-value=1.1e+02 Score=20.39 Aligned_cols=64 Identities=9% Similarity=-0.117 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCchhhhHHHHHHHHHhcCCCcccHHHHHHHHHh
Q 021308 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG 111 (314)
Q Consensus 36 ~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~ 111 (314)
+.+.|+.+.+.|...+.+.+++++|+.+.-.. | ++.. ...+..+..-|.....|.++++.|+..
T Consensus 57 a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g---------~~~a-~~~Lg~~y~~G~gv~~d~~~A~~~~~~ 120 (133)
T d1klxa_ 57 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---------DQDG-CLILGYKQYAGKGVVKNEKQAVKTFEK 120 (133)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---------CHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred hhhhHHHhhhhccccchhhHHHHHHHhhhhcc--C---------cchH-HHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 34555555556655555777888888664221 1 1111 122222222233234477788888776
No 32
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.01 E-value=57 Score=20.25 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=13.4
Q ss_pred CHHHHHHHHHhccCCC
Q 021308 149 NVDKAVEYIVSCKNLD 164 (314)
Q Consensus 149 ~~~~~~~~l~~~q~~d 164 (314)
+++++++||++...++
T Consensus 56 n~e~Av~~Lls~~~~~ 71 (73)
T d1wiva_ 56 DIEKATDWVFNNSGPS 71 (73)
T ss_dssp CHHHHHHHHHHSCCSS
T ss_pred CHHHHHHHHHcCCCCC
Confidence 7899999999986654
Done!