BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021309
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 132/289 (45%), Gaps = 28/289 (9%)
Query: 28 LGGVVEACCLQ----PIDVIKTRLQLD----------TTGTYRGIIHCGATVSRTEGVRA 73
LG AC P+D K RLQ+ + YRG++ T+ RTEG R+
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 74 LWKGLTPFATHLTLKYTLRMG-SNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIV 132
L+ GL ++R+G ++V Q K S+ I + RL+AG G L A+A+
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGAL-AVAVA 122
Query: 133 TPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNG-TNQAA 191
P +VVK+R Q Q + +Y+ + + I REEG+ GLW G +P V RN N A
Sbjct: 123 QPTDVVKVRFQAQ-ARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181
Query: 192 MFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGG 251
+ T D LL D P S F AG V P DVVKTR M + G
Sbjct: 182 LVTYDLIKDTLLKANLMTDD---LPCH-FTSAFGAGFCTTVIASPVDVVKTRYMNSALG- 236
Query: 252 GELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQV 300
+Y H T+ +EG A +KG +P +R+ +M+ +Q+
Sbjct: 237 ---QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 22 KAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG----TYRGIIHCGATVSRTEGVRALWKG 77
+ ++GS G + QP DV+K R Q Y+ + T++R EG+R LWKG
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 78 LTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEV 137
+P + + + + + + + FGAG + I +P +V
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTV-IASPVDV 225
Query: 138 VKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 193
VK R ++ L +Y HCA ++R+EG + G P+ +R G+ MF
Sbjct: 226 VKTRY-----MNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMF 276
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 220 MISGFL-AGTAGPVC---TGPFDVVKTRLMAQS------RGGGELKYKGMVHAIRTIYAE 269
M FL AGTA + T P D K RL Q R +Y+G++ I T+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 270 EGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYER 306
EG +L+ GL+ L R ++ + D V FY +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK 97
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 27/296 (9%)
Query: 24 VSGSLGGVVEACCLQPIDVIKTRLQ-------LDTTGTYRGIIHCGATVSRTEGVRALWK 76
++G + + + PI+ +K LQ + Y+GII C + + +G + W+
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 77 GLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQ--------GRLMAGFGAGVLEA 128
G ++Y N F+ +K G + G L +G AG +
Sbjct: 72 G----NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA-TS 126
Query: 129 LAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTN 188
L V P + + RL G ++ G +C I + +GL GL+ G +V
Sbjct: 127 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 189 QAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQS 248
+AA F + +L + ++ W MI+ + AG V + PFD V+ R+M QS
Sbjct: 187 RAAYFGVYDTAKGML--PDPKNVHIIVSW--MIAQTVTAVAGLV-SYPFDTVRRRMMMQS 241
Query: 249 -RGGGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGF 303
R G ++ Y G V R I +EG A +KG ++R G A + + D++ F
Sbjct: 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEIKKF 296
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 212 KVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GGELKYKGMVHAIRTIYA 268
+ L + ++G +A P + VK L Q E +YKG++ + I
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 269 EEGLLALWKGLLPRLMRIPPGQAIMWAVADQ 299
E+G L+ W+G L ++R P QA+ +A D+
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDK 93
>pdb|3OEP|A Chain A, Crystal Structure Of Ttha0988 In Space Group P43212
pdb|3OPF|A Chain A, Crystal Structure Of Ttha0988 In Space Group P212121
pdb|3OPF|B Chain B, Crystal Structure Of Ttha0988 In Space Group P212121
pdb|3OPF|C Chain C, Crystal Structure Of Ttha0988 In Space Group P212121
pdb|3ORE|A Chain A, Crystal Structure Of Ttha0988 In Space Group P6522
pdb|3ORE|B Chain B, Crystal Structure Of Ttha0988 In Space Group P6522
Length = 494
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 224 FLAGTAGPVCTGPFDVVKTRLMAQSRGGG------ELKYKGMV-HAIRTI---YAEEGLL 273
FL G G +GP D RL + G G E YKG V A+R + +A G +
Sbjct: 240 FLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFV 299
Query: 274 ALWKGLLPRLMRIPPGQAIMW 294
AL +G IPPGQ+ +W
Sbjct: 300 ALLEG-----EEIPPGQSFLW 315
>pdb|3DQQ|A Chain A, The Crystal Structure Of The Putative Trna Synthase From
Salmonella Typhimurium Lt2
pdb|3DQQ|B Chain B, The Crystal Structure Of The Putative Trna Synthase From
Salmonella Typhimurium Lt2
Length = 421
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 196 KNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG---GG 252
K + L+W K +G +V + S G GPV + T S G
Sbjct: 63 KQSLAALVWLKKQGCQQVYFKYCSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVNG 122
Query: 253 ELKYKGMVHAIRTIYAEEGLLA-----LWKGLLPRLMR 285
Y+G + + + AE G+ + LPRLM
Sbjct: 123 RTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLME 160
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 66 SRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGV 125
S+TE A WK + H TL L N + F D +T S G +M+ F V
Sbjct: 179 SKTEAELAAWKFMDENKPHFTLNAVL---PNYTIGTIF-DPETQSGSTSGWMMSLFNGEV 234
Query: 126 LEALAIVTP 134
ALA++ P
Sbjct: 235 SPALALMPP 243
>pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Capsid Protein Of
Group A Rotavirus
Length = 398
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 TEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISN 113
T V AL+ PF H T+ TLR+ S AV +S D+ ++N
Sbjct: 302 TPAVAALFPNAQPFEHHATVGLTLRIES-AVCESVLADASETMLAN 346
>pdb|3GZU|C Chain C, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|D Chain D, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|E Chain E, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|O Chain O, Vp7 Recoated Rotavirus Dlp
Length = 397
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 TEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISN 113
T V AL+ PF H T+ TLR+ S AV +S D+ ++N
Sbjct: 301 TPAVAALFPNAQPFEHHATVGLTLRIES-AVCESVLADASETMLAN 345
>pdb|3KZ4|C Chain C, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|D Chain D, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|E Chain E, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|F Chain F, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|G Chain G, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|H Chain H, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|I Chain I, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|J Chain J, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|K Chain K, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|L Chain L, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|M Chain M, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|N Chain N, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|O Chain O, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|F Chain F, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|G Chain G, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|H Chain H, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|I Chain I, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|J Chain J, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|K Chain K, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|L Chain L, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|M Chain M, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|N Chain N, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|O Chain O, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 397
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 TEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISN 113
T V AL+ PF H T+ TLR+ S AV +S D+ ++N
Sbjct: 301 TPAVAALFPNAQPFEHHATVGLTLRIES-AVCESVLADASETMLAN 345
>pdb|3N09|C Chain C, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|D Chain D, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|E Chain E, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
Length = 397
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 68 TEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISN 113
T V AL+ PF H T+ TLR+ S AV +S D+ ++N
Sbjct: 301 TPAVAALFPNAQPFEHHATVGLTLRIES-AVCESVLADASKTMLAN 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,534,678
Number of Sequences: 62578
Number of extensions: 390931
Number of successful extensions: 1023
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 17
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)