Query 021309
Match_columns 314
No_of_seqs 166 out of 1634
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.3E-57 4.3E-62 395.1 22.4 279 21-309 3-291 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.1E-56 3.6E-61 388.5 23.3 281 17-304 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.6E-36 5.4E-41 262.0 16.3 194 112-306 6-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.9E-36 9.8E-41 261.0 17.0 189 115-308 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 47.5 20 0.00067 23.4 3.3 42 270-311 32-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 32.9 37 0.0013 22.1 2.9 41 271-311 33-73 (81)
7 2acm_A Mucin-1; auto-catalytic 25.0 11 0.00039 22.6 -0.5 20 257-276 40-59 (66)
8 1y9i_A Low temperature require 23.6 91 0.0031 23.6 4.0 46 187-232 111-158 (178)
9 3cx5_H Cytochrome B-C1 complex 20.8 82 0.0028 21.0 2.9 40 270-309 42-81 (93)
10 3f2e_A SIRV coat protein; four 15.3 81 0.0028 20.0 1.8 34 254-287 6-43 (100)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-57 Score=395.10 Aligned_cols=279 Identities=28% Similarity=0.421 Sum_probs=250.4
Q ss_pred HHHHhHHHHHHHHhhhccchhHhhhhhhcCCC----------CCccchhhhhhhHhhhhcHhhhhcccchHHhHHHHHHH
Q 021309 21 MKAVSGSLGGVVEACCLQPIDVIKTRLQLDTT----------GTYRGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYT 90 (314)
Q Consensus 21 ~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~----------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 90 (314)
..+++|++|++++.+++||+|++|+|+|++.. ..+.+.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999864 25789999999999999999999999999999999999
Q ss_pred hhhccHHHHHHhhhccCCCCCCchhhHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhh
Q 021309 91 LRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEG 170 (314)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~~Pl~~ik~~~q~~~~~~~~~~~~~~~~~~~~~i~~~~G 170 (314)
++|.+||.+++.+.+.. +..+....+++|++||+++.+ +++|+|++|+|+|++... ....+|++.++++++|+++||
T Consensus 83 i~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~-~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~eG 159 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVA-VAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIAREEG 159 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999886632 245667889999999999999 999999999999998643 223478999999999999999
Q ss_pred hhhhhcchhhhHhhhhhhhhhHHhHHHHHHHHHhhccCCCCCCcchHHHHHHHHHHhhhhhhccccHHHHHHHHhhhcCC
Q 021309 171 LFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRG 250 (314)
Q Consensus 171 ~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~vk~r~q~~~~~ 250 (314)
+++||+|+.+++++.+++.+++|.+||.+++.+.+.. ....+....+++|+++|++++++++|+|+||+|+|.+...
T Consensus 160 ~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~---~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~ 236 (303)
T 2lck_A 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN---LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999876543 1234567789999999999999999999999999998643
Q ss_pred CCccccccHHHHHHHHHHHhChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHhhhh
Q 021309 251 GGELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYL 309 (314)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 309 (314)
.|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+...
T Consensus 237 ----~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 237 ----QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp ----SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ----ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999988765443
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-56 Score=388.47 Aligned_cols=281 Identities=23% Similarity=0.371 Sum_probs=242.2
Q ss_pred CChhHHHHhHHHHHHHHhhhccchhHhhhhhhcCCC-------CCccchhhhhhhHhhhhcHhhhhcccchHHhHHHHHH
Q 021309 17 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTT-------GTYRGIIHCGATVSRTEGVRALWKGLTPFATHLTLKY 89 (314)
Q Consensus 17 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~-------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~ 89 (314)
.+.+..+++|++|++++.+++||+|++|+|+|++.. ..+.+.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456788999999999999999999999999999753 2578999999999999999999999999999999999
Q ss_pred HhhhccHHHHHHhhhccCCCCC----CchhhHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCCcccccCCHHHHHHHH
Q 021309 90 TLRMGSNAVFQSAFKDSKTGKI----SNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMI 165 (314)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ag~~~~~~~~~Pl~~ik~~~q~~~~~~~~~~~~~~~~~~~~~i 165 (314)
+++|++||.+++.+........ .....+++|++||+++.+ +++|+|++|+|+|++........+|++.+++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~-~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC-FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 9999999999995433222111 235678999999999999 99999999999999864433345789999999999
Q ss_pred HHhhhhhhhhcchhhhHhhhhhhhhhHHhHHHHHHHHHhhccCCCCCCcchHHHHHHHHHHhhhhhhccccHHHHHHHHh
Q 021309 166 IREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLM 245 (314)
Q Consensus 166 ~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~vk~r~q 245 (314)
+++||+++||+|+.+++++.++..+++|.+||.+++.+.+. ...+.+..+++|+++|++++++++|+|+||+|+|
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999999966432 2345677889999999999999999999999999
Q ss_pred hhcCCC-CccccccHHHHHHHHHHHhChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHH
Q 021309 246 AQSRGG-GELKYKGMVHAIRTIYAEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFY 304 (314)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 304 (314)
.+.... ....|.++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 976432 24478999999999999999999999999999995 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.6e-36 Score=262.04 Aligned_cols=194 Identities=26% Similarity=0.367 Sum_probs=166.7
Q ss_pred CchhhHHHHHHHHHHHHhhccccHHHHHHHHHhccCCC--CcccccCCHHHHHHHHHHhhhhhhhhcchhhhHhhhhhhh
Q 021309 112 SNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLS--PELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQ 189 (314)
Q Consensus 112 ~~~~~~~~g~~ag~~~~~~~~~Pl~~ik~~~q~~~~~~--~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~ 189 (314)
+....+++|++||+++.+ +++|+|++|+|+|++.... ....+|++.++++++++++||+++||||+.+.+++.++..
T Consensus 6 ~~~~~~~aG~~ag~~~~~-~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKT-AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456678999999999999 9999999999999986422 1234789999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhhccCCCC-CCcchHHHHHHHHHHhhhhhhccccHHHHHHHHhhhcCCC-CccccccHHHHHHHHH
Q 021309 190 AAMFTAKNAFDVLLWKKHEGDG-KVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGG-GELKYKGMVHAIRTIY 267 (314)
Q Consensus 190 ~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ag~~~~~~~~P~d~vk~r~q~~~~~~-~~~~~~~~~~~~~~i~ 267 (314)
+++|.+||.+++.+......+. .....+..+++|+++|++++++++|+|+||+|+|.+.... ....|.+.++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996543321111 1123467899999999999999999999999999985432 2457899999999999
Q ss_pred HHhChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHh
Q 021309 268 AEEGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYER 306 (314)
Q Consensus 268 ~~eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 306 (314)
++||++|||||+.++++|.+|.++++|.+||.+++.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999997654
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-36 Score=261.01 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHHHHhhccccHHHHHHHHHhccCCCC-----cccccCCHHHHHHHHHHhhhhhhhhcchhhhHhhhhhhh
Q 021309 115 GRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSP-----ELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQ 189 (314)
Q Consensus 115 ~~~~~g~~ag~~~~~~~~~Pl~~ik~~~q~~~~~~~-----~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~ 189 (314)
..+++|++||+++.+ +++|+|++|+|+|++..... ...+|++.++++++++++||+++||+|+.+.+++.+++.
T Consensus 3 ~~~~aG~~ag~~~~~-~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 81 (303)
T 2lck_A 3 VKFLGAGTAACIADL-ITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFA 81 (303)
T ss_dssp CHHHHHHHHHHHHHH-TTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHH-HcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHH
Confidence 367899999999999 99999999999999864321 123689999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhhccCCCCCCcchHHHHHHHHHHhhhhhhccccHHHHHHHHhhhcCCCCccccccHHHHHHHHHHH
Q 021309 190 AAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMVHAIRTIYAE 269 (314)
Q Consensus 190 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~i~~~ 269 (314)
+++|.+||.+++.+.+.. ...+.+..+++|.++|+++.++++|+|+||+|+|.+........|.+.++++++|+++
T Consensus 82 ~i~f~~ye~~k~~~~~~~----~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGS----EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HHTTTHHHHHHHHHSCCC----SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC----cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHh
Confidence 999999999999886542 1356788899999999999999999999999999987543455789999999999999
Q ss_pred hChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 021309 270 EGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRY 308 (314)
Q Consensus 270 eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 308 (314)
||++|||||+.++++|.+|..+++|.+||.+++.+.+..
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887644
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=47.47 E-value=20 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=33.6
Q ss_pred hChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHhhhhcc
Q 021309 270 EGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRN 311 (314)
Q Consensus 270 eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 311 (314)
.|+-..+|-+...++..+|..++.+.+|+..++..+..+..+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355566777778888899999999999999999887765544
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=32.90 E-value=37 Score=22.07 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=32.7
Q ss_pred ChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHhhhhcc
Q 021309 271 GLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYLRN 311 (314)
Q Consensus 271 G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 311 (314)
|+...+|-+.-.++..+|...+.+.+|+..++..+..+..+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 55556777777788889999999999999999887766544
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.97 E-value=11 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHhChhhhh
Q 021309 257 KGMVHAIRTIYAEEGLLALW 276 (314)
Q Consensus 257 ~~~~~~~~~i~~~eG~~~ly 276 (314)
+++.+.+.+||+++|+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 36788899999999988875
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=23.65 E-value=91 Score=23.61 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=31.0
Q ss_pred hhhhhHHhHHHHHHHHHhhccCC--CCCCcchHHHHHHHHHHhhhhhh
Q 021309 187 TNQAAMFTAKNAFDVLLWKKHEG--DGKVLQPWQSMISGFLAGTAGPV 232 (314)
Q Consensus 187 ~~~~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ag~~~~~ 232 (314)
.-..+.|..||..|.+....... ..........+++|..|++++.+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 35567788999999876554321 12344678889999888876643
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=20.80 E-value=82 Score=21.04 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=32.2
Q ss_pred hChhhhhcchhhhhhcchhhhHHHHHHHHHHHHHHHhhhh
Q 021309 270 EGLLALWKGLLPRLMRIPPGQAIMWAVADQVTGFYERRYL 309 (314)
Q Consensus 270 eG~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 309 (314)
+|+-..+|-+.-.++..+|...+.+.+|+..++..+..+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~ 81 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYS 81 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhc
Confidence 4566677778888888999999999999999998776543
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=15.34 E-value=81 Score=20.04 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=23.8
Q ss_pred cccccHHHHHHHHHHHhCh----hhhhcchhhhhhcch
Q 021309 254 LKYKGMVHAIRTIYAEEGL----LALWKGLLPRLMRIP 287 (314)
Q Consensus 254 ~~~~~~~~~~~~i~~~eG~----~~ly~G~~~~~~~~~ 287 (314)
+++.++.+-+..++.+-|+ +++|.|++..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4666777777777888886 558999887766643
Done!