Your job contains 1 sequence.
>021316
MAGTKLCGGDTAFLLRSHLHSLEAATRRAAPFPGRVSSLSPKPKPSRFRIVAMTVKRSPK
RLKYSAPRFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSH
SAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTF
ILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDN
EWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED
ANSTAIEDLIPSAT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021316
(314 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2078668 - symbol:AT3G01920 species:3702 "Arabi... 1110 1.8e-112 1
UNIPROTKB|Q8ECV7 - symbol:yciO "RNA binding protein YciO"... 248 3.9e-21 1
TIGR_CMR|SO_3016 - symbol:SO_3016 "Sua5/YciO/YrdC/YwlC fa... 248 3.9e-21 1
UNIPROTKB|Q885M0 - symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC... 226 8.3e-19 1
UNIPROTKB|Q605R9 - symbol:MCA2209 "Sua5/YciO/YrdC/YwlC fa... 223 1.7e-18 1
UNIPROTKB|Q47YC6 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC f... 223 1.7e-18 1
TIGR_CMR|CPS_3520 - symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC ... 223 1.7e-18 1
UNIPROTKB|Q83D35 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC f... 219 4.6e-18 1
TIGR_CMR|CBU_0909 - symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC ... 219 4.6e-18 1
UNIPROTKB|Q9KSS8 - symbol:VC_1178 "Putative uncharacteriz... 217 7.5e-18 1
TIGR_CMR|VC_1178 - symbol:VC_1178 "conserved hypothetical... 217 7.5e-18 1
UNIPROTKB|Q74CS6 - symbol:yrdC "tRNA (N6-threonylcarbamyl... 214 1.6e-17 1
TIGR_CMR|GSU_1596 - symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC ... 214 1.6e-17 1
UNIPROTKB|E2R8D0 - symbol:YRDC "Uncharacterized protein" ... 126 6.7e-10 2
ZFIN|ZDB-GENE-070410-65 - symbol:zgc:162301 "zgc:162301" ... 117 7.9e-10 2
MGI|MGI:2387201 - symbol:Yrdc "yrdC domain containing (E.... 126 3.9e-09 2
UNIPROTKB|Q2GG33 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC f... 102 4.0e-09 2
TIGR_CMR|ECH_0802 - symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC ... 102 4.0e-09 2
RGD|708492 - symbol:Yrdc "yrdC domain containing (E.coli)... 121 9.6e-09 2
UNIPROTKB|Q2GDI6 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC f... 133 3.3e-07 1
TIGR_CMR|NSE_0579 - symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC ... 133 3.3e-07 1
UNIPROTKB|Q83AA2 - symbol:rimN "tRNA threonylcarbamoylade... 128 1.0e-06 1
TIGR_CMR|CBU_2003 - symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC ... 128 1.0e-06 1
UNIPROTKB|Q8EKQ3 - symbol:rimN "tRNA threonylcarbamoylade... 122 8.5e-06 1
TIGR_CMR|SO_0037 - symbol:SO_0037 "Sua5/YciO/YrdC/YwlC fa... 122 8.5e-06 1
UNIPROTKB|Q86U90 - symbol:YRDC "YrdC domain-containing pr... 128 8.9e-06 1
UNIPROTKB|Q71WN7 - symbol:LMOf2365_2514 "Sua5/YciO/YrdC/Y... 129 1.1e-05 1
UNIPROTKB|Q0VC80 - symbol:YRDC "YrdC domain-containing pr... 127 1.1e-05 1
FB|FBgn0061361 - symbol:CG33786 species:7227 "Drosophila ... 123 2.4e-05 1
UNIPROTKB|F1NJF5 - symbol:YRDC "Uncharacterized protein" ... 122 3.6e-05 1
TAIR|locus:2175173 - symbol:AT5G60590 "AT5G60590" species... 122 4.7e-05 1
CGD|CAL0002177 - symbol:orf19.7088 species:5476 "Candida ... 123 6.5e-05 1
UNIPROTKB|Q48AU1 - symbol:rimN "tRNA threonylcarbamoylade... 91 0.00011 2
TIGR_CMR|CPS_0027 - symbol:CPS_0027 "putative RNA-binding... 91 0.00011 2
UNIPROTKB|Q3Z887 - symbol:DET0835 "Sua5/YciO/YrdC/YwlC fa... 115 0.00013 1
TIGR_CMR|DET_0835 - symbol:DET_0835 "Sua5/YciO/YrdC/YwlC ... 115 0.00013 1
UNIPROTKB|P45748 - symbol:tsaC "protein involved in synth... 110 0.00032 1
UNIPROTKB|Q81JX5 - symbol:BAS5174 "Sua5/yciO/yrdC/ywlC fa... 114 0.00056 1
TIGR_CMR|BA_5568 - symbol:BA_5568 "sua5/yciO/yrdC/ywlC fa... 114 0.00056 1
>TAIR|locus:2078668 [details] [associations]
symbol:AT3G01920 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AC010797 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 UniGene:At.48610
UniGene:At.41213 EMBL:AY079025 EMBL:AY143853 IPI:IPI00545644
RefSeq:NP_566156.2 HSSP:P45847 ProteinModelPortal:Q9SGI3 SMR:Q9SGI3
IntAct:Q9SGI3 STRING:Q9SGI3 PRIDE:Q9SGI3 EnsemblPlants:AT3G01920.1
GeneID:821220 KEGG:ath:AT3G01920 TAIR:At3g01920
HOGENOM:HOG000265231 InParanoid:Q9SGI3 OMA:LTLMCRD PhylomeDB:Q9SGI3
ProtClustDB:CLSN2690515 Genevestigator:Q9SGI3 Uniprot:Q9SGI3
Length = 307
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 215/314 (68%), Positives = 251/314 (79%)
Query: 1 MAGTKLCGGDTAFLLRSHLHSLEAATRRAAPFPGRVSSLSPKPKPSRFRIVAMTVKRSPK 60
MA KL GG A +R L RR + P +SLSP+ R+ IVA+ KRSPK
Sbjct: 1 MAVAKLHGGGMA-AMRLLLLPSPMTHRRPSTLPS-TASLSPR----RY-IVALAAKRSPK 53
Query: 61 RLKYSAPRFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSH 120
RLKYS PRFTKEG L+Y+E DP G DSWKL+PV++LLK+GAVGV+PTDT+YAI CD K+H
Sbjct: 54 RLKYSTPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNH 113
Query: 121 SAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTF 180
SA+ERLRRIK +E SKPLSILCRSLRDIDT+T GFPRGDG GHAN+FRAVK CLPGPYTF
Sbjct: 114 SAVERLRRIKKIESSKPLSILCRSLRDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTF 173
Query: 181 ILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDN 240
ILTASKE+PK+CV YGTT+ KY+ RK+VGVRI +DA+CQAILQ+MDAPLI TSVK K+N
Sbjct: 174 ILTASKELPKQCVGYGTTSVKYASRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKEN 233
Query: 241 EWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 300
EWM+DP I D YGPEGLDFVVDGG+RVAEPST+VDMTG YPK+IR+GKGP L WM ED
Sbjct: 234 EWMIDPTAIGDIYGPEGLDFVVDGGIRVAEPSTIVDMTGPYPKVIREGKGPILPWMVVED 293
Query: 301 ANSTAIEDLIPSAT 314
S+ +DL+ S T
Sbjct: 294 DESSLRQDLMASGT 307
>UNIPROTKB|Q8ECV7 [details] [associations]
symbol:yciO "RNA binding protein YciO" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 55/145 (37%), Positives = 85/145 (58%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V +LK G V V PTD+ YA+ C + A+ R+ RI+ +E S++CR L ++
Sbjct: 17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
TY + D Q +R +K C PGPYTFI ASKEVP++ + +K +G
Sbjct: 77 TYA----KVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKKKTIG 120
Query: 210 VRIPNDAICQAILQKMDAPLISTSV 234
+R+P++ I A+L+ +DAPL+STS+
Sbjct: 121 IRVPDNVIALALLEALDAPLMSTSL 145
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 52/146 (35%), Positives = 85/146 (58%)
Query: 146 RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLR 205
RD+ T + + D Q +R +K C PGPYTFI ASKEVP++ + +
Sbjct: 70 RDLSELAT-YAKVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKK 116
Query: 206 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV-DPVVIADTYGPEGLDFVVDG 264
K +G+R+P++ I A+L+ +DAPL+STS+ + D E+ DP I D + +D ++ G
Sbjct: 117 KTIGIRVPDNVIALALLEALDAPLMSTSLV-MPDAEFAESDPEQIRDLLEHQ-VDVIIHG 174
Query: 265 GVRVAEPSTVVDMTGTYPKIIRQGKG 290
G +P+TV+DM+ +++R+G G
Sbjct: 175 GYLGEKPTTVIDMSEDGFEVLREGAG 200
>TIGR_CMR|SO_3016 [details] [associations]
symbol:SO_3016 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_718584.1
ProteinModelPortal:Q8ECV7 SMR:Q8ECV7 GeneID:1170704
KEGG:son:SO_3016 PATRIC:23525668 ProtClustDB:CLSK906958
Uniprot:Q8ECV7
Length = 206
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 55/145 (37%), Positives = 85/145 (58%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V +LK G V V PTD+ YA+ C + A+ R+ RI+ +E S++CR L ++
Sbjct: 17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
TY + D Q +R +K C PGPYTFI ASKEVP++ + +K +G
Sbjct: 77 TYA----KVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKKKTIG 120
Query: 210 VRIPNDAICQAILQKMDAPLISTSV 234
+R+P++ I A+L+ +DAPL+STS+
Sbjct: 121 IRVPDNVIALALLEALDAPLMSTSL 145
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 52/146 (35%), Positives = 85/146 (58%)
Query: 146 RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLR 205
RD+ T + + D Q +R +K C PGPYTFI ASKEVP++ + +
Sbjct: 70 RDLSELAT-YAKVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKK 116
Query: 206 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV-DPVVIADTYGPEGLDFVVDG 264
K +G+R+P++ I A+L+ +DAPL+STS+ + D E+ DP I D + +D ++ G
Sbjct: 117 KTIGIRVPDNVIALALLEALDAPLMSTSLV-MPDAEFAESDPEQIRDLLEHQ-VDVIIHG 174
Query: 265 GVRVAEPSTVVDMTGTYPKIIRQGKG 290
G +P+TV+DM+ +++R+G G
Sbjct: 175 GYLGEKPTTVIDMSEDGFEVLREGAG 200
>UNIPROTKB|Q885M0 [details] [associations]
symbol:PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847
HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_791636.1
ProteinModelPortal:Q885M0 SMR:Q885M0 GeneID:1183452
KEGG:pst:PSPTO_1811 PATRIC:19994886 ProtClustDB:CLSK867809
BioCyc:PSYR223283:GJIX-1846-MONOMER Uniprot:Q885M0
Length = 209
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 77 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 136
+ + P ++ E++K G + V PTD+ YA+ C + SAIER+RR++ ++
Sbjct: 4 FFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKH 63
Query: 137 PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 196
+++C L + F + D FRA+K PGPYTFIL A++EVP+ +
Sbjct: 64 NFTLMCCDLSQLGL----FAKVD----TGAFRALKAHTPGPYTFILNATREVPRLIL--- 112
Query: 197 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDP 246
+ R+ +G+R+P+ I QA+L+++ PL+S S+ D + DP
Sbjct: 113 -----HPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMPGDTVPLSDP 157
Score = 187 (70.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 43/124 (34%), Positives = 72/124 (58%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
FRA+K PGPYTFIL A++EVP+ + + R+ +G+R+P+ I QA+L+++
Sbjct: 86 FRALKAHTPGPYTFILNATREVPRLIL--------HPKRRTIGLRVPSHPIAQALLEQLG 137
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
PL+S S+ D + DP + +D ++DGG+ STV++++ P+I+R
Sbjct: 138 EPLMSVSLIMPGDTVPLSDPYEMRQIL-EHHVDLIIDGGIGGISASTVINLSEGEPQIVR 196
Query: 287 QGKG 290
G G
Sbjct: 197 VGCG 200
>UNIPROTKB|Q605R9 [details] [associations]
symbol:MCA2209 "Sua5/YciO/YrdC/YwlC family protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017282 GenomeReviews:AE017282_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:YP_114629.1
ProteinModelPortal:Q605R9 SMR:Q605R9 GeneID:3102131
KEGG:mca:MCA2209 PATRIC:22608270 Uniprot:Q605R9
Length = 207
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 52/185 (28%), Positives = 97/185 (52%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ E++++G V V PTD+ YA C L A+ R+R I+ ++ +++C L +
Sbjct: 17 IRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICHDLSQV- 75
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
+ F R + + FR +K PGPYTF+L A++EVP++ ++ RK +G
Sbjct: 76 ---SAFARINNEA----FRLIKTLTPGPYTFLLEATREVPRRL--------QHPKRKTIG 120
Query: 210 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA 269
+R+P++A+ Q ++ ++ PL S+++ + E + DP I + G + G + A
Sbjct: 121 IRLPDNAVSQMLVAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA 180
Query: 270 EPSTV 274
E + V
Sbjct: 181 ETTIV 185
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/124 (34%), Positives = 76/124 (61%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
FR +K PGPYTF+L A++EVP++ ++ RK +G+R+P++A+ Q ++ ++
Sbjct: 86 FRLIKTLTPGPYTFLLEATREVPRRL--------QHPKRKTIGIRLPDNAVSQMLVAELG 137
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
PL S+++ + E + DP I + G ++ ++ GV +T+VD+TG +P I+R
Sbjct: 138 EPLFSSTLILPGETEGLADPEDIRERVGTR-VELILAAGVIPFAETTIVDLTGEFPVIVR 196
Query: 287 QGKG 290
QGKG
Sbjct: 197 QGKG 200
>UNIPROTKB|Q47YC6 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 58/176 (32%), Positives = 92/176 (52%)
Query: 77 YVEAD-PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
YV D P G ++ +++K+G V V PTD+ YA+ C L A+ER+ RI++++
Sbjct: 6 YVHPDNPQGR---LMKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKD 62
Query: 136 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 195
+++C+ L I YT R D +R +K PG YTFI SKEVPK+ +
Sbjct: 63 HNFTLVCQDLSQISEYT----RVDNTA----YRLLKSNTPGAYTFIFKGSKEVPKRLLN- 113
Query: 196 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 251
+K +G+R+P++ I QA+L ++ P++STS+ DP I D
Sbjct: 114 -------PKKKTIGIRVPDNTIAQALLTELAEPIMSTSLIMPGQEMAEYDPEQIRD 162
Score = 177 (67.4 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 43/124 (34%), Positives = 68/124 (54%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
+R +K PG YTFI SKEVPK+ + +K +G+R+P++ I QA+L ++
Sbjct: 86 YRLLKSNTPGAYTFIFKGSKEVPKRLLN--------PKKKTIGIRVPDNTIAQALLTELA 137
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P++STS+ DP I D + +D +V+GG P+TV+D + +IIR
Sbjct: 138 EPIMSTSLIMPGQEMAEYDPEQIRDLLEHQ-VDLIVNGGYLGEHPTTVIDFSNDSIEIIR 196
Query: 287 QGKG 290
G+G
Sbjct: 197 VGEG 200
>TIGR_CMR|CPS_3520 [details] [associations]
symbol:CPS_3520 "Sua5/YciO/YrdC/YwlC family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 RefSeq:YP_270194.1 ProteinModelPortal:Q47YC6
SMR:Q47YC6 STRING:Q47YC6 GeneID:3519220 KEGG:cps:CPS_3520
PATRIC:21469977 HOGENOM:HOG000076162 OMA:GWCGTEP
BioCyc:CPSY167879:GI48-3548-MONOMER Uniprot:Q47YC6
Length = 206
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 58/176 (32%), Positives = 92/176 (52%)
Query: 77 YVEAD-PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
YV D P G ++ +++K+G V V PTD+ YA+ C L A+ER+ RI++++
Sbjct: 6 YVHPDNPQGR---LMKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKD 62
Query: 136 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 195
+++C+ L I YT R D +R +K PG YTFI SKEVPK+ +
Sbjct: 63 HNFTLVCQDLSQISEYT----RVDNTA----YRLLKSNTPGAYTFIFKGSKEVPKRLLN- 113
Query: 196 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 251
+K +G+R+P++ I QA+L ++ P++STS+ DP I D
Sbjct: 114 -------PKKKTIGIRVPDNTIAQALLTELAEPIMSTSLIMPGQEMAEYDPEQIRD 162
Score = 177 (67.4 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 43/124 (34%), Positives = 68/124 (54%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
+R +K PG YTFI SKEVPK+ + +K +G+R+P++ I QA+L ++
Sbjct: 86 YRLLKSNTPGAYTFIFKGSKEVPKRLLN--------PKKKTIGIRVPDNTIAQALLTELA 137
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P++STS+ DP I D + +D +V+GG P+TV+D + +IIR
Sbjct: 138 EPIMSTSLIMPGQEMAEYDPEQIRDLLEHQ-VDLIVNGGYLGEHPTTVIDFSNDSIEIIR 196
Query: 287 QGKG 290
G+G
Sbjct: 197 VGEG 200
>UNIPROTKB|Q83D35 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 50/158 (31%), Positives = 88/158 (55%)
Query: 78 VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 137
+ P + ++ VE +K G + TD+ YA+ C L + S ER+RR++ + + P
Sbjct: 4 IHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHP 63
Query: 138 LSILCRSLRDIDTYTTGFPRGDGQGHAN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYG 196
++LCR L +I Y AN +FR +K PGPYTFIL+A++ VP++
Sbjct: 64 FTLLCRDLSEIAVYAR---------IANPVFRFLKAHTPGPYTFILSATRAVPRQL---- 110
Query: 197 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234
++ RK +G+R+P+ + QAIL+++ PL++ ++
Sbjct: 111 ----QHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTL 144
Score = 200 (75.5 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 164 AN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAIL 222
AN +FR +K PGPYTFIL+A++ VP++ ++ RK +G+R+P+ + QAIL
Sbjct: 81 ANPVFRFLKAHTPGPYTFILSATRAVPRQL--------QHPKRKTIGIRVPDHRVIQAIL 132
Query: 223 QKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYP 282
+++ PL++ ++ + +W + + +D +VD GV EP+TV+D+ P
Sbjct: 133 EQLQEPLMNVTLIF-PGEQWAPSEISEREDELAAQVDLIVDSGVCGVEPTTVIDLVDGEP 191
Query: 283 KIIRQGKG 290
I+R+GKG
Sbjct: 192 TILREGKG 199
>TIGR_CMR|CBU_0909 [details] [associations]
symbol:CBU_0909 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 HOGENOM:HOG000076162 OMA:GWCGTEP RefSeq:NP_819924.1
ProteinModelPortal:Q83D35 SMR:Q83D35 GeneID:1208802
KEGG:cbu:CBU_0909 PATRIC:17930519 ProtClustDB:CLSK914406
BioCyc:CBUR227377:GJ7S-900-MONOMER Uniprot:Q83D35
Length = 204
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 50/158 (31%), Positives = 88/158 (55%)
Query: 78 VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 137
+ P + ++ VE +K G + TD+ YA+ C L + S ER+RR++ + + P
Sbjct: 4 IHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHP 63
Query: 138 LSILCRSLRDIDTYTTGFPRGDGQGHAN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYG 196
++LCR L +I Y AN +FR +K PGPYTFIL+A++ VP++
Sbjct: 64 FTLLCRDLSEIAVYAR---------IANPVFRFLKAHTPGPYTFILSATRAVPRQL---- 110
Query: 197 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234
++ RK +G+R+P+ + QAIL+++ PL++ ++
Sbjct: 111 ----QHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTL 144
Score = 200 (75.5 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 164 AN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAIL 222
AN +FR +K PGPYTFIL+A++ VP++ ++ RK +G+R+P+ + QAIL
Sbjct: 81 ANPVFRFLKAHTPGPYTFILSATRAVPRQL--------QHPKRKTIGIRVPDHRVIQAIL 132
Query: 223 QKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYP 282
+++ PL++ ++ + +W + + +D +VD GV EP+TV+D+ P
Sbjct: 133 EQLQEPLMNVTLIF-PGEQWAPSEISEREDELAAQVDLIVDSGVCGVEPTTVIDLVDGEP 191
Query: 283 KIIRQGKG 290
I+R+GKG
Sbjct: 192 TILREGKG 199
>UNIPROTKB|Q9KSS8 [details] [associations]
symbol:VC_1178 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 PIR:E82233 RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8
SMR:Q9KSS8 DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178
PATRIC:20081446 OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 53/170 (31%), Positives = 89/170 (52%)
Query: 82 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 141
P + + V +++ G V V PTD+ YA+ C L++ +ER+ +I+ ++ ++L
Sbjct: 9 PENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLL 68
Query: 142 CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 201
CR L ++ Y R D FR +K+ PGPYTFI +KEVP++ +
Sbjct: 69 CRDLSELSLYA----RVDNTA----FRLLKNNTPGPYTFIFKGTKEVPRRLMN------- 113
Query: 202 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 251
RK +G+R+PN+ I +L+ + PL+STS+ ++ DP I D
Sbjct: 114 -EKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRD 162
Score = 175 (66.7 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 43/125 (34%), Positives = 69/125 (55%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
FR +K+ PGPYTFI +KEVP++ + RK +G+R+PN+ I +L+ +
Sbjct: 86 FRLLKNNTPGPYTFIFKGTKEVPRRLMN--------EKRKTIGIRVPNNKIALDLLEALG 137
Query: 227 APLISTSVKWLKDNEWMV-DPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKII 285
PL+STS+ L N++ DP I D +D +++GG +P+TV+D + +
Sbjct: 138 EPLMSTSLI-LPGNDFTESDPEEIRDRL-EHAVDVILNGGYLGQQPTTVIDFSDDEVVVA 195
Query: 286 RQGKG 290
R G G
Sbjct: 196 RVGAG 200
>TIGR_CMR|VC_1178 [details] [associations]
symbol:VC_1178 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057 HSSP:P45847 PIR:E82233
RefSeq:NP_230823.1 ProteinModelPortal:Q9KSS8 SMR:Q9KSS8
DNASU:2614611 GeneID:2614611 KEGG:vch:VC1178 PATRIC:20081446
OMA:RYFDVHP ProtClustDB:CLSK874245 Uniprot:Q9KSS8
Length = 206
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 53/170 (31%), Positives = 89/170 (52%)
Query: 82 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 141
P + + V +++ G V V PTD+ YA+ C L++ +ER+ +I+ ++ ++L
Sbjct: 9 PENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLL 68
Query: 142 CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 201
CR L ++ Y R D FR +K+ PGPYTFI +KEVP++ +
Sbjct: 69 CRDLSELSLYA----RVDNTA----FRLLKNNTPGPYTFIFKGTKEVPRRLMN------- 113
Query: 202 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 251
RK +G+R+PN+ I +L+ + PL+STS+ ++ DP I D
Sbjct: 114 -EKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRD 162
Score = 175 (66.7 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 43/125 (34%), Positives = 69/125 (55%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
FR +K+ PGPYTFI +KEVP++ + RK +G+R+PN+ I +L+ +
Sbjct: 86 FRLLKNNTPGPYTFIFKGTKEVPRRLMN--------EKRKTIGIRVPNNKIALDLLEALG 137
Query: 227 APLISTSVKWLKDNEWMV-DPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKII 285
PL+STS+ L N++ DP I D +D +++GG +P+TV+D + +
Sbjct: 138 EPLMSTSLI-LPGNDFTESDPEEIRDRL-EHAVDVILNGGYLGQQPTTVIDFSDDEVVVA 195
Query: 286 RQGKG 290
R G G
Sbjct: 196 RVGAG 200
>UNIPROTKB|Q74CS6 [details] [associations]
symbol:yrdC "tRNA (N6-threonylcarbamyl-A37) modification
ATPase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/132 (37%), Positives = 80/132 (60%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
++ +K LPGPYTF++ A+ VP V + +K VG+RIP++ IC A+++++
Sbjct: 84 YKILKRYLPGPYTFVIDATSVVPDLLV---------TKQKTVGIRIPDNRICIALVKELG 134
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P+++TS L E + DP+ + T G + LD VVDGG A+ S+VV + G YP+++R
Sbjct: 135 HPIVTTSAN-LSGEEPIGDPLEVERTLGKQ-LDLVVDGGNLTADVSSVVSLIGDYPQVLR 192
Query: 287 QGKGPKLYWMEE 298
+G G + W E
Sbjct: 193 RGIGD-VSWCGE 203
Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 38/114 (33%), Positives = 56/114 (49%)
Query: 76 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
M + +P + + V E+L G V PTDT Y I C + S IER+ +K E
Sbjct: 1 MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKK 60
Query: 136 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVP 189
KP S +C L ++ Y +A ++ +K LPGPYTF++ A+ VP
Sbjct: 61 KPFSFICSELSEVARYAKV------SNYA--YKILKRYLPGPYTFVIDATSVVP 106
>TIGR_CMR|GSU_1596 [details] [associations]
symbol:GSU_1596 "Sua5/YciO/YrdC/YwlC family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566 TIGRFAMs:TIGR00057
HSSP:P45847 OMA:LTLMCRD HOGENOM:HOG000076162 RefSeq:NP_952647.1
ProteinModelPortal:Q74CS6 GeneID:2687124 KEGG:gsu:GSU1596
PATRIC:22026037 ProtClustDB:CLSK924523
BioCyc:GSUL243231:GH27-1540-MONOMER Uniprot:Q74CS6
Length = 203
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/132 (37%), Positives = 80/132 (60%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
++ +K LPGPYTF++ A+ VP V + +K VG+RIP++ IC A+++++
Sbjct: 84 YKILKRYLPGPYTFVIDATSVVPDLLV---------TKQKTVGIRIPDNRICIALVKELG 134
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P+++TS L E + DP+ + T G + LD VVDGG A+ S+VV + G YP+++R
Sbjct: 135 HPIVTTSAN-LSGEEPIGDPLEVERTLGKQ-LDLVVDGGNLTADVSSVVSLIGDYPQVLR 192
Query: 287 QGKGPKLYWMEE 298
+G G + W E
Sbjct: 193 RGIGD-VSWCGE 203
Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 38/114 (33%), Positives = 56/114 (49%)
Query: 76 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
M + +P + + V E+L G V PTDT Y I C + S IER+ +K E
Sbjct: 1 MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKK 60
Query: 136 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVP 189
KP S +C L ++ Y +A ++ +K LPGPYTF++ A+ VP
Sbjct: 61 KPFSFICSELSEVARYAKV------SNYA--YKILKRYLPGPYTFVIDATSVVP 106
>UNIPROTKB|E2R8D0 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 OMA:MSPARPC
EMBL:AAEX03009595 RefSeq:XP_003639549.1 Ensembl:ENSCAFT00000005221
GeneID:100855794 KEGG:cfa:100855794 Uniprot:E2R8D0
Length = 274
Score = 126 (49.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 38/119 (31%), Positives = 54/119 (45%)
Query: 73 GGLMYVEADPSGADSWK--LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIK 130
GG A P A W L V L+ GAV VPTDTLY C +A++ + R+K
Sbjct: 45 GGGAVRAASPERA-GWTEALRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLK 103
Query: 131 NVEPSKPLSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEV 188
+KPL++ + D+ Y P G ++ LPGP T +L S+E+
Sbjct: 104 GRSHAKPLAVCLGRVADVYRYCRVSVPEG----------LLRDLLPGPVTLVLERSQEL 152
Score = 78 (32.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 41/128 (32%), Positives = 58/128 (45%)
Query: 170 VKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPL 229
++ LPGP T +L S+E+ + T VGVRIP+ A Q + Q PL
Sbjct: 134 LRDLLPGPVTLVLERSQELNRDL---NPCTPL------VGVRIPDHAFIQDLAQVFGEPL 184
Query: 230 ISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG-VRVAE-P-----STVVDMT--GT 280
TS L + D + P+ L V+DGG + + P STVVD++ G
Sbjct: 185 ALTSAN-LSSQASSLTVEEFQDLW-PQ-LSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGK 241
Query: 281 YPKIIRQG 288
+ IIR G
Sbjct: 242 FG-IIRPG 248
>ZFIN|ZDB-GENE-070410-65 [details] [associations]
symbol:zgc:162301 "zgc:162301" species:7955 "Danio
rerio" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 ZFIN:ZDB-GENE-070410-65
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:CU855952
IPI:IPI00632527 Ensembl:ENSDART00000060729 Bgee:F1R994
Uniprot:F1R994
Length = 263
Score = 117 (46.2 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 33/96 (34%), Positives = 44/96 (45%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
L V LK G V VPTDT+Y + C ++ AI R+ IK KPL+I + DI
Sbjct: 59 LSCTVNALKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIY 118
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTAS 185
Y + R ++ LPGP T +L S
Sbjct: 119 KYCKVSVKD---------RLLRDLLPGPVTLVLERS 145
Score = 87 (35.7 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 41/126 (32%), Positives = 55/126 (43%)
Query: 168 RAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDA 227
R ++ LPGP T +L S + G K +GVRIP+ + + Q D
Sbjct: 128 RLLRDLLPGPVTLVLERSATLN------GDLNP---FTKLIGVRIPDHPFMRRLCQMCDT 178
Query: 228 PLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV---RVAEPSTVVDMT--GTYP 282
PL TS + V D + P L VVDGG + STVVD++ G Y
Sbjct: 179 PLALTSAN-VSTQSSTVAANEFEDLW-PR-LAVVVDGGPIEDKSRLGSTVVDLSVCGRY- 234
Query: 283 KIIRQG 288
+IIR G
Sbjct: 235 RIIRPG 240
>MGI|MGI:2387201 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10090
"Mus musculus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020 "membrane"
evidence=IDA] [GO:0051051 "negative regulation of transport"
evidence=ISA] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
MGI:MGI:2387201 GO:GO:0005739 GO:GO:0016020 EMBL:AL606933
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
EMBL:AK153627 EMBL:AY283537 EMBL:BC023823 IPI:IPI00229852
RefSeq:NP_705794.2 UniGene:Mm.258568 ProteinModelPortal:Q3U5F4
SMR:Q3U5F4 STRING:Q3U5F4 PhosphoSite:Q3U5F4 PaxDb:Q3U5F4
PRIDE:Q3U5F4 Ensembl:ENSMUST00000102628 GeneID:230734
KEGG:mmu:230734 UCSC:uc008urf.2 InParanoid:Q3U5F4 ChiTaRS:YRDC
NextBio:380087 Bgee:Q3U5F4 Genevestigator:Q3U5F4 Uniprot:Q3U5F4
Length = 280
Score = 126 (49.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 36/116 (31%), Positives = 53/116 (45%)
Query: 78 VEADPSGADSWK--LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
VEA W L V L+ GAV VPTDTLY + C S +A+ + R+K +
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEA 116
Query: 136 KPLSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPK 190
KPL++ + D+ Y PR ++ PGP T ++ S+E+ K
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVTLVMERSEELNK 162
Score = 71 (30.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 37/123 (30%), Positives = 55/123 (44%)
Query: 175 PGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234
PGP T ++ S+E+ K + + VG+RIP+ A + Q PL TS
Sbjct: 147 PGPVTLVMERSEELNKDLNPF---------TRLVGIRIPDHAFMLDLAQMFGGPLALTSA 197
Query: 235 KWLKDNEWMVDPVVIADTYGPEGLDFVVDGG-VRVAE-P-----STVVDMT--GTYPKII 285
L + D + P L V+DGG + ++ P STVVD++ G + II
Sbjct: 198 N-LSSQASSLSVEEFQDLW-PH-LSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFG-II 253
Query: 286 RQG 288
R G
Sbjct: 254 RPG 256
>UNIPROTKB|Q2GG33 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 102 (41.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V+ LK + + PT+T+YA+ S A++++ +IK +KPLS+L ++ I
Sbjct: 2 ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFIL 182
++T H F+ ++ PGP TF+L
Sbjct: 62 QFSTLTE------HT--FKIIQKLSPGPVTFVL 86
Score = 91 (37.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
F+ ++ PGP TF+L Y ++ +G+RIP+ I IL D
Sbjct: 71 FKIIQKLSPGPVTFVLPIHN--------YNKLPRQF-FNDTIGIRIPDHPIALEILSNFD 121
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P++ TSV + + + +T + D + STV+D+T +Y KI+R
Sbjct: 122 NPVVGTSVN-ISGQPSVTASHQVQETIKQHISVIIEDDSLVNGIESTVIDLT-SY-KILR 178
Query: 287 QG 288
G
Sbjct: 179 TG 180
>TIGR_CMR|ECH_0802 [details] [associations]
symbol:ECH_0802 "Sua5/YciO/YrdC/YwlC family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000236 GenomeReviews:CP000236_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_507600.1
ProteinModelPortal:Q2GG33 STRING:Q2GG33 GeneID:3926999
KEGG:ech:ECH_0802 PATRIC:20577032 OMA:EDICVIP
ProtClustDB:CLSK749649 BioCyc:ECHA205920:GJNR-805-MONOMER
Uniprot:Q2GG33
Length = 194
Score = 102 (41.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V+ LK + + PT+T+YA+ S A++++ +IK +KPLS+L ++ I
Sbjct: 2 ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFIL 182
++T H F+ ++ PGP TF+L
Sbjct: 62 QFSTLTE------HT--FKIIQKLSPGPVTFVL 86
Score = 91 (37.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 226
F+ ++ PGP TF+L Y ++ +G+RIP+ I IL D
Sbjct: 71 FKIIQKLSPGPVTFVLPIHN--------YNKLPRQF-FNDTIGIRIPDHPIALEILSNFD 121
Query: 227 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286
P++ TSV + + + +T + D + STV+D+T +Y KI+R
Sbjct: 122 NPVVGTSVN-ISGQPSVTASHQVQETIKQHISVIIEDDSLVNGIESTVIDLT-SY-KILR 178
Query: 287 QG 288
G
Sbjct: 179 TG 180
>RGD|708492 [details] [associations]
symbol:Yrdc "yrdC domain containing (E.coli)" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016020
"membrane" evidence=IEA;ISO] [GO:0051051 "negative regulation of
transport" evidence=IEA;ISO] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 RGD:708492 GO:GO:0005739 GO:GO:0016020
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:BC088428 EMBL:BC099797 IPI:IPI00654465
RefSeq:NP_783194.2 UniGene:Rn.9475 ProteinModelPortal:Q499R4
STRING:Q499R4 PhosphoSite:Q499R4 Ensembl:ENSRNOT00000039870
GeneID:319113 KEGG:rno:319113 UCSC:RGD:708492 InParanoid:Q5I0E4
NextBio:672105 Genevestigator:Q499R4 Uniprot:Q499R4
Length = 280
Score = 121 (47.7 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 35/116 (30%), Positives = 52/116 (44%)
Query: 78 VEADPSGADSWK--LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 135
VEA W L V L+ GAV VPTDTLY + C +A+ + R+K +
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEA 116
Query: 136 KPLSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPK 190
KPL++ + D+ Y PR ++ PGP T ++ S+E+ K
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVTLVMERSEELNK 162
Score = 73 (30.8 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 38/123 (30%), Positives = 54/123 (43%)
Query: 175 PGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234
PGP T ++ S+E+ K + VG+RIP+ A + Q PL TS
Sbjct: 147 PGPVTLVMERSEELNKDLNPFTPL---------VGIRIPDHAFMLDLAQMFGGPLALTSA 197
Query: 235 KWLKDNEWMVDPVVIADTYGPEGLDFVVDGG-VRVAE-P-----STVVDMT--GTYPKII 285
L + D + P L V+DGG + +E P STVVD++ G + II
Sbjct: 198 N-LSSQASSLSVEEFQDLW-PH-LSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFG-II 253
Query: 286 RQG 288
R G
Sbjct: 254 RSG 256
>UNIPROTKB|Q2GDI6 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 133 (51.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 94 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 153
V LL+ G V + PT+T+YA+ CD ++ A+ R+ IK K L I+ + D+ ++ +
Sbjct: 6 VSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFAS 65
Query: 154 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASK 186
F + Q R ++ C PGP TFIL K
Sbjct: 66 -F--NESQA-----RLIQECCPGPVTFILKRKK 90
>TIGR_CMR|NSE_0579 [details] [associations]
symbol:NSE_0579 "Sua5/YciO/YrdC/YwlC family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_506460.1
ProteinModelPortal:Q2GDI6 STRING:Q2GDI6 GeneID:3931732
KEGG:nse:NSE_0579 PATRIC:22681197 OMA:YDIKQRN
ProtClustDB:CLSK2527989 BioCyc:NSEN222891:GHFU-596-MONOMER
Uniprot:Q2GDI6
Length = 195
Score = 133 (51.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 94 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 153
V LL+ G V + PT+T+YA+ CD ++ A+ R+ IK K L I+ + D+ ++ +
Sbjct: 6 VSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFAS 65
Query: 154 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASK 186
F + Q R ++ C PGP TFIL K
Sbjct: 66 -F--NESQA-----RLIQECCPGPVTFILKRKK 90
>UNIPROTKB|Q83AA2 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:227377 "Coxiella burnetii RSA 493"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/144 (25%), Positives = 66/144 (45%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V+ L++G V PT+ +Y + CD +H A+ +L IK K ++ + ++
Sbjct: 8 INDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVE 67
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
T D + A +F PGP+T+ ASKE P T ++S +
Sbjct: 68 PLTEPI---DPKALARVFDT----WPGPFTWTFPASKEAPH------WITGQHST---IA 111
Query: 210 VRIPNDAICQAILQKMDAPLISTS 233
+R+ + + + Q+ PLIS+S
Sbjct: 112 IRVTAHPLAKLLCQRFAGPLISSS 135
>TIGR_CMR|CBU_2003 [details] [associations]
symbol:CBU_2003 "Sua5/YciO/YrdC/YwlC family protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 TIGRFAMs:TIGR00057
RefSeq:NP_820978.1 HSSP:P45748 ProteinModelPortal:Q83AA2
GeneID:1209916 KEGG:cbu:CBU_2003 PATRIC:17932747 OMA:IAIRVTA
ProtClustDB:CLSK915181 BioCyc:CBUR227377:GJ7S-1976-MONOMER
Uniprot:Q83AA2
Length = 186
Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/144 (25%), Positives = 66/144 (45%)
Query: 90 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
+ V+ L++G V PT+ +Y + CD +H A+ +L IK K ++ + ++
Sbjct: 8 INDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVE 67
Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
T D + A +F PGP+T+ ASKE P T ++S +
Sbjct: 68 PLTEPI---DPKALARVFDT----WPGPFTWTFPASKEAPH------WITGQHST---IA 111
Query: 210 VRIPNDAICQAILQKMDAPLISTS 233
+R+ + + + Q+ PLIS+S
Sbjct: 112 IRVTAHPLAKLLCQRFAGPLISSS 135
>UNIPROTKB|Q8EKQ3 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 122 (48.0 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 47/192 (24%), Positives = 85/192 (44%)
Query: 89 KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 146
+L P + +++ G V PT+ +Y + CD + +AI++L +K K L ++
Sbjct: 3 QLHPSDIKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 147 DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 205
+ Y D Q + PGP+TF++ V + C + + + S
Sbjct: 63 QLLAYVDESQLTDEQLELAFSK-----WPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSA- 116
Query: 206 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 265
H GVR A+CQA+ PL+STS ++ + ++ G +D +V G
Sbjct: 117 -HEGVR----ALCQAL----GKPLVSTSANLAGEDPALSGDEILNVFEGK--IDALVLGQ 165
Query: 266 V-RVAEPSTVVD 276
+ +PST++D
Sbjct: 166 LGEQRQPSTIID 177
>TIGR_CMR|SO_0037 [details] [associations]
symbol:SO_0037 "Sua5/YciO/YrdC/YwlC family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
TIGRFAMs:TIGR00057 HSSP:P45748 RefSeq:NP_715679.1
ProteinModelPortal:Q8EKQ3 SMR:Q8EKQ3 GeneID:1167935
KEGG:son:SO_0037 PATRIC:23519765 ProtClustDB:CLSK905558
Uniprot:Q8EKQ3
Length = 188
Score = 122 (48.0 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 47/192 (24%), Positives = 85/192 (44%)
Query: 89 KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 146
+L P + +++ G V PT+ +Y + CD + +AI++L +K K L ++
Sbjct: 3 QLHPSDIKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFS 62
Query: 147 DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 205
+ Y D Q + PGP+TF++ V + C + + + S
Sbjct: 63 QLLAYVDESQLTDEQLELAFSK-----WPGPFTFVMPIKPHVSRYLCGEFDSIAVRVSA- 116
Query: 206 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 265
H GVR A+CQA+ PL+STS ++ + ++ G +D +V G
Sbjct: 117 -HEGVR----ALCQAL----GKPLVSTSANLAGEDPALSGDEILNVFEGK--IDALVLGQ 165
Query: 266 V-RVAEPSTVVD 276
+ +PST++D
Sbjct: 166 LGEQRQPSTIID 177
>UNIPROTKB|Q86U90 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IDA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020
EMBL:CH471059 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
EMBL:AL929472 GO:GO:0051051 eggNOG:COG0009 TIGRFAMs:TIGR00057
CTD:79693 HOGENOM:HOG000239829 HOVERGEN:HBG055700 OMA:MSPARPC
OrthoDB:EOG4KD6N1 EMBL:AY172561 EMBL:BC008984 EMBL:BC067857
EMBL:BC068057 EMBL:BC080186 EMBL:AY286019 EMBL:AY286020
EMBL:AF250397 EMBL:AK027129 IPI:IPI00384180 RefSeq:NP_078916.3
UniGene:Hs.301564 ProteinModelPortal:Q86U90 SMR:Q86U90
STRING:Q86U90 PhosphoSite:Q86U90 DMDM:74750410 PaxDb:Q86U90
PRIDE:Q86U90 Ensembl:ENST00000373044 GeneID:79693 KEGG:hsa:79693
UCSC:uc001cca.1 GeneCards:GC01M038268 H-InvDB:HIX0023600
HGNC:HGNC:28905 HPA:HPA030147 MIM:612276 neXtProt:NX_Q86U90
PharmGKB:PA142670553 InParanoid:Q86U90 GenomeRNAi:79693
NextBio:68972 Bgee:Q86U90 CleanEx:HS_YRDC Genevestigator:Q86U90
Uniprot:Q86U90
Length = 279
Score = 128 (50.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 37/114 (32%), Positives = 53/114 (46%)
Query: 80 ADPSGADSWK--LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 137
A P A W L V L+ GAV VPTDTLY + C +A+ + R+K +KP
Sbjct: 59 ASPERA-GWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKP 117
Query: 138 LSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPK 190
L++ + D+ Y P G +K LPGP T ++ S+E+ K
Sbjct: 118 LAVCLGRVADVYRYCRVRVPEG----------LLKDLLPGPVTLVMERSEELNK 161
>UNIPROTKB|Q71WN7 [details] [associations]
symbol:LMOf2365_2514 "Sua5/YciO/YrdC/YwlC family protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE017262 GenomeReviews:AE017262_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057 HOGENOM:HOG000076160
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 OMA:LICHMAD RefSeq:YP_015102.1
ProteinModelPortal:Q71WN7 STRING:Q71WN7 GeneID:2799707
KEGG:lmf:LMOf2365_2514 PATRIC:20326399 ProtClustDB:CLSK564996
Uniprot:Q71WN7
Length = 345
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 46/198 (23%), Positives = 78/198 (39%)
Query: 91 EPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDT 150
+ +LL+ G PT+T+Y + D + +A++++ K PL + +D
Sbjct: 19 QEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDP 78
Query: 151 YTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGV 210
+ +P + ++ PGP T IL K+ V G +T VGV
Sbjct: 79 FVASYP-------VKAIQLMEKFWPGPLTVILPLKKDSLATNVSAGLST--------VGV 123
Query: 211 RIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAE 270
R+P + A++ + P+ + S VI D G + G V
Sbjct: 124 RMPEHPVSLALIDAANIPVAAPSANRSGKPSPTTASHVIEDLDGKIA-GIIDGGATGVGL 182
Query: 271 PSTVVDMTGTYPKIIRQG 288
STV+D + P I+R G
Sbjct: 183 ESTVIDCSLDIPVILRPG 200
>UNIPROTKB|Q0VC80 [details] [associations]
symbol:YRDC "YrdC domain-containing protein, mitochondrial"
species:9913 "Bos taurus" [GO:0016020 "membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005739 GO:GO:0016020 Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 GO:GO:0051051 eggNOG:COG0009
TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364 EMBL:BC120307
IPI:IPI00687357 RefSeq:NP_001069018.1 UniGene:Bt.61252
ProteinModelPortal:Q0VC80 STRING:Q0VC80 PRIDE:Q0VC80
Ensembl:ENSBTAT00000008529 GeneID:512062 KEGG:bta:512062 CTD:79693
HOGENOM:HOG000239829 HOVERGEN:HBG055700 InParanoid:Q0VC80
OMA:MSPARPC OrthoDB:EOG4KD6N1 NextBio:20870233 Uniprot:Q0VC80
Length = 276
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 80 ADPS-GADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPL 138
A+P G + L V L+ GAV VPTDTLY + C A+ + R+K +KPL
Sbjct: 57 ANPERGGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPL 116
Query: 139 SILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPK 190
++ + D+ Y P G +K LPGP T ++ S+E+ K
Sbjct: 117 AVCLGRVADVYRYCHVRVPEG----------LLKDLLPGPVTLVMERSEELNK 159
>FB|FBgn0061361 [details] [associations]
symbol:CG33786 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=ISS] [GO:0045182 "translation
regulator activity" evidence=ISS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:AE013599 GO:GO:0003899 GO:GO:0032774
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 TIGRFAMs:TIGR00057 GeneTree:ENSGT00390000015364
OMA:MSPARPC UniGene:Dm.1509 EMBL:AY071501 RefSeq:NP_001027444.1
HSSP:O27727 SMR:Q8SYJ9 STRING:Q8SYJ9 EnsemblMetazoa:FBtr0091787
GeneID:3772640 KEGG:dme:Dmel_CG33786 UCSC:CG33786-RA
FlyBase:FBgn0061361 InParanoid:Q8SYJ9 GenomeRNAi:3772640
NextBio:854475 Uniprot:Q8SYJ9
Length = 248
Score = 123 (48.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 60/224 (26%), Positives = 104/224 (46%)
Query: 86 DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSL 145
D L+ + L G V +PTDT+Y + CD + +AI++L IK + KP++I C +
Sbjct: 37 DEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAI-C--V 93
Query: 146 RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLR 205
+ID R GQ + LPGP T ++ + ++ + + +T+K
Sbjct: 94 HNIDAL-----RRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLN--PSTSK---- 142
Query: 206 KHVGVRIPN----DAICQAILQKMDAPLIS----TSVKWLKDNEWMVDPVVIADTYGPEG 257
+G+RIP+ +C A+ Q+ L S ++ L+ +E+ + +
Sbjct: 143 --IGIRIPDFNFMRDLC-AVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGR 199
Query: 258 LDFVVDGGVRVAEPSTVVDM-TGTYPKIIRQGKG--PKLYWMEE 298
+ + R+A STV+D+ T Y +I+R G P L MEE
Sbjct: 200 IGLTEER--RLA--STVIDLATPGYYEIVRAGVALKPTLSLMEE 239
>UNIPROTKB|F1NJF5 [details] [associations]
symbol:YRDC "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0051051 "negative
regulation of transport" evidence=IEA] InterPro:IPR006070
Pfam:PF01300 PROSITE:PS51163 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 GO:GO:0051051 TIGRFAMs:TIGR00057
GeneTree:ENSGT00390000015364 OMA:MSPARPC EMBL:AADN02043911
IPI:IPI00573762 Ensembl:ENSGALT00000002509 Uniprot:F1NJF5
Length = 259
Score = 122 (48.0 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 61/228 (26%), Positives = 95/228 (41%)
Query: 81 DPSGADSWK--LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPL 138
+P G W+ + V L+EG + VPTDT+Y + C + A++ + +K +KPL
Sbjct: 45 EPRG---WREAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPL 101
Query: 139 SILCRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGT 197
+I + I Y H N+ ++ LPGP T +L S+E+ K + T
Sbjct: 102 AICLGDVEHIYRYC----------HVNVPDELLQDLLPGPVTLVLKRSEELNKDLNPF-T 150
Query: 198 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNE----W-----MVDPVV 248
+ + H +R A C L A +S+ L +E W +VD
Sbjct: 151 SLVGVRIPNHPFIRELARA-CPGPLALTSAN-VSSQASTLTVSEFQDLWPQLSLVVDGGP 208
Query: 249 IADTYGPE---G---LDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 290
I D PE G +D V G + P +T T +I+RQ G
Sbjct: 209 IGDVQSPECRLGSTVVDLSVSGKFTIIRPGCA--LTSTV-EILRQKYG 253
>TAIR|locus:2175173 [details] [associations]
symbol:AT5G60590 "AT5G60590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006070 Pfam:PF01300
PROSITE:PS51163 EMBL:CP002688 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 TIGRFAMs:TIGR00057 OMA:MSPARPC IPI:IPI00517786
RefSeq:NP_974970.1 UniGene:At.19096 ProteinModelPortal:F4K0E6
SMR:F4K0E6 PRIDE:F4K0E6 EnsemblPlants:AT5G60590.2 GeneID:836180
KEGG:ath:AT5G60590 Uniprot:F4K0E6
Length = 288
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 62/226 (27%), Positives = 96/226 (42%)
Query: 91 EPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDT 150
+ +E +K V VPTDTLY CD S A+ R+ IK + + PL+I + DI
Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136
Query: 151 Y--TTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKH 207
T+ P G + LPGP T +L + + +K + G T
Sbjct: 137 VATTSHLPHG----------LLDSLLPGPVTLVLQRGESSILEKSLNPGIGT-------- 178
Query: 208 VGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV----DPVVIADTYGPEGLDFVVD 263
+GVR+P+ + + + + L TS D + + + Y +G ++
Sbjct: 179 IGVRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDG--GLLP 236
Query: 264 GGVRVAEPSTVVDMT--GTYPKIIRQGKGPKL-------YWMEEED 300
G R ST+VD+T G Y KIIR G + Y +EEE+
Sbjct: 237 SG-RAG--STIVDLTKVGKY-KIIRPGSAKQATVAILEKYLLEEEE 278
>CGD|CAL0002177 [details] [associations]
symbol:orf19.7088 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006450 "regulation of translational fidelity" evidence=IEA]
[GO:0070525 "threonylcarbamoyladenosine metabolic process"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 CGD:CAL0002177
EMBL:AACQ01000024 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566 TIGRFAMs:TIGR00057
InterPro:IPR005145 InterPro:IPR010923 Pfam:PF03481
PIRSF:PIRSF004930 RefSeq:XP_720379.1 RefSeq:XP_888667.1
ProteinModelPortal:Q5AFI0 STRING:Q5AFI0 GeneID:3638042
GeneID:3703980 KEGG:cal:CaO19.7088 KEGG:cal:CaO19_7088
Uniprot:Q5AFI0
Length = 382
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 46/190 (24%), Positives = 80/190 (42%)
Query: 101 AVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDG 160
A+G PT+T+Y + S +++ + + KN PL + S+ + +
Sbjct: 55 AIGF-PTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIP-- 111
Query: 161 QGHANIFRAVKHCLPGPYTFILTASKEVP-KKCVRYGTTTAKYSLRKHVGVRIPNDAICQ 219
Q + ++ + H PGP T +L +K+ P K V T VR+PN + +
Sbjct: 112 QVYLDL---ISHFWPGPLTILLPITKDSPISKLVTANQDT--------FAVRMPNHPVAR 160
Query: 220 AILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMT 278
A++ D P+ + S + V D G + ++DGG V STV+D
Sbjct: 161 ALIAMSDTPIAAPSANASTRPSPTLAEHVYHDLNGK--IPLILDGGACNVGVESTVIDGL 218
Query: 279 GTYPKIIRQG 288
P ++R G
Sbjct: 219 VDPPMLLRPG 228
>UNIPROTKB|Q48AU1 [details] [associations]
symbol:rimN "tRNA threonylcarbamoyladenosine biosynthesis
protein RimN" species:167879 "Colwellia psychrerythraea 34H"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01852 InterPro:IPR006070
InterPro:IPR023535 Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945
SUPFAM:SSF55821 RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1
STRING:Q48AU1 GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 93 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 151
VVE K G + PT+ ++ + CD + A++RL ++K P K L +L S + Y
Sbjct: 6 VVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLPY 64
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 208 VGVRIPNDAICQAILQKMDAPLISTSVKWLKDNE----WMVDPVVIADTYGPEGLDFVVD 263
+ VRI + A+ Q+ + P++STS L E W +V++ + +DF++
Sbjct: 107 IAVRITSQPDVVALCQQTNKPIVSTSAN-LSGQEPAKTWQSLDLVLS-----KQVDFILK 160
Query: 264 G-GVRVAEPSTVVD-MTGTYPKIIR 286
G + PS ++D +TG KIIR
Sbjct: 161 GVTLGRTSPSKIIDALTG---KIIR 182
>TIGR_CMR|CPS_0027 [details] [associations]
symbol:CPS_0027 "putative RNA-binding protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535
Pfam:PF01300 PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
RefSeq:YP_266809.1 ProteinModelPortal:Q48AU1 STRING:Q48AU1
GeneID:3520388 KEGG:cps:CPS_0027 PATRIC:21463489 eggNOG:COG0009
HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
BioCyc:CPSY167879:GI48-144-MONOMER TIGRFAMs:TIGR00057
Uniprot:Q48AU1
Length = 183
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 93 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 151
VVE K G + PT+ ++ + CD + A++RL ++K P K L +L S + Y
Sbjct: 6 VVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLPY 64
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 208 VGVRIPNDAICQAILQKMDAPLISTSVKWLKDNE----WMVDPVVIADTYGPEGLDFVVD 263
+ VRI + A+ Q+ + P++STS L E W +V++ + +DF++
Sbjct: 107 IAVRITSQPDVVALCQQTNKPIVSTSAN-LSGQEPAKTWQSLDLVLS-----KQVDFILK 160
Query: 264 G-GVRVAEPSTVVD-MTGTYPKIIR 286
G + PS ++D +TG KIIR
Sbjct: 161 GVTLGRTSPSKIIDALTG---KIIR 182
>UNIPROTKB|Q3Z887 [details] [associations]
symbol:DET0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
Identities = 42/151 (27%), Positives = 68/151 (45%)
Query: 83 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILC 142
+G +S +++ V +LK G V V PTDT+YA+ + A+ R+ IK +K L L
Sbjct: 8 AGMES-QIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALI 66
Query: 143 RSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKY 202
+ I+ FP A+ + K PG T +L + +P + G T
Sbjct: 67 GDISQINQVAKVFPP-----LAS--KLAKEYWPGGLTLVLPKTDNIPLELTG-GNET--- 115
Query: 203 SLRKHVGVRIPNDAICQAILQKMDAPLISTS 233
V +RIPN +L+++ P+ TS
Sbjct: 116 -----VAIRIPNQPAVIEMLKRVGEPVTGTS 141
>TIGR_CMR|DET_0835 [details] [associations]
symbol:DET_0835 "Sua5/YciO/YrdC/YwlC family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.90.870.10
InterPro:IPR017945 SUPFAM:SSF55821 eggNOG:COG0009 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076161 RefSeq:YP_181562.1
ProteinModelPortal:Q3Z887 STRING:Q3Z887 GeneID:3229877
KEGG:det:DET0835 PATRIC:21608729 OMA:NETVAIR ProtClustDB:CLSK935606
BioCyc:DETH243164:GJNF-836-MONOMER Uniprot:Q3Z887
Length = 213
Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
Identities = 42/151 (27%), Positives = 68/151 (45%)
Query: 83 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILC 142
+G +S +++ V +LK G V V PTDT+YA+ + A+ R+ IK +K L L
Sbjct: 8 AGMES-QIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALI 66
Query: 143 RSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKY 202
+ I+ FP A+ + K PG T +L + +P + G T
Sbjct: 67 GDISQINQVAKVFPP-----LAS--KLAKEYWPGGLTLVLPKTDNIPLELTG-GNET--- 115
Query: 203 SLRKHVGVRIPNDAICQAILQKMDAPLISTS 233
V +RIPN +L+++ P+ TS
Sbjct: 116 -----VAIRIPNQPAVIEMLKRVGEPVTGTS 141
>UNIPROTKB|P45748 [details] [associations]
symbol:tsaC "protein involved in synthesis of
threonylcarbamoyladenosine-modified tRNA" species:83333
"Escherichia coli K-12" [GO:0070526 "threonylcarbamoyladenosine
biosynthetic process" evidence=IGI;IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000049 "tRNA binding" evidence=IEA;IDA]
[GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
HAMAP:MF_01852 InterPro:IPR006070 InterPro:IPR023535 Pfam:PF01300
PROSITE:PS51163 GO:GO:0005524 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0003725 GO:GO:0000049 GO:GO:0006364 GO:GO:0070526
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821
eggNOG:COG0009 HOGENOM:HOG000076163 KO:K07566 OMA:FGLGCNP
PIR:E65120 RefSeq:NP_417741.1 RefSeq:YP_492150.1 PDB:1HRU
PDBsum:1HRU ProteinModelPortal:P45748 SMR:P45748 DIP:DIP-12916N
IntAct:P45748 MINT:MINT-1230775 PRIDE:P45748
EnsemblBacteria:EBESCT00000004855 EnsemblBacteria:EBESCT00000017773
GeneID:12933460 GeneID:947783 KEGG:ecj:Y75_p3894 KEGG:eco:b3282
PATRIC:32121998 EchoBASE:EB2689 EcoGene:EG12840
ProtClustDB:PRK10634 BioCyc:EcoCyc:G7698-MONOMER
BioCyc:ECOL316407:JW3243-MONOMER EvolutionaryTrace:P45748
Genevestigator:P45748 Uniprot:P45748
Length = 190
Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
Identities = 36/140 (25%), Positives = 60/140 (42%)
Query: 94 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 153
+++L E V PT+ ++ + CD S +A+ RL +K K L ++ + + Y
Sbjct: 14 IDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYID 73
Query: 154 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 213
D Q IF PGP TF+ A P+ T ++ + VR+
Sbjct: 74 DTMLTDVQ-RETIFSR----WPGPVTFVFPAPATTPR------WLTGRFD---SLAVRVT 119
Query: 214 NDAICQAILQKMDAPLISTS 233
+ + A+ Q PL+STS
Sbjct: 120 DHPLVVALCQAYGKPLVSTS 139
>UNIPROTKB|Q81JX5 [details] [associations]
symbol:BAS5174 "Sua5/yciO/yrdC/ywlC family protein"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 168 RAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDA 227
+ ++H PGP T IL + + +K V G T VGVR+P+ + A++++ +
Sbjct: 92 KLMEHFWPGPLTIILPRKEGISEK-VTAGLHT--------VGVRMPDHPVALALIEEANV 142
Query: 228 PLISTSVKWLKDNEWMVDPVVIADTYGP--EGLDFVVDGGVR-VAEPSTVVDMTGTYPKI 284
P+ + S + P + + Y E + +VDGG V STV+D T P I
Sbjct: 143 PVAAPSA----NRSGRPSPTLASHVYEDLNEKIAGIVDGGATGVGVESTVIDCTSAVPTI 198
Query: 285 IRQG 288
+R G
Sbjct: 199 LRPG 202
>TIGR_CMR|BA_5568 [details] [associations]
symbol:BA_5568 "sua5/yciO/yrdC/ywlC family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006070 Pfam:PF01300 PROSITE:PS51163
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.90.870.10 InterPro:IPR017945 SUPFAM:SSF55821 KO:K07566
TIGRFAMs:TIGR00057 HOGENOM:HOG000076160 InterPro:IPR005145
InterPro:IPR010923 Pfam:PF03481 PIRSF:PIRSF004930 HSSP:O27727
OMA:ANTSTKP RefSeq:NP_847725.1 RefSeq:YP_022236.2
RefSeq:YP_031413.1 ProteinModelPortal:Q81JX5 DNASU:1085255
EnsemblBacteria:EBBACT00000012764 EnsemblBacteria:EBBACT00000015440
EnsemblBacteria:EBBACT00000024112 GeneID:1085255 GeneID:2816855
GeneID:2852074 KEGG:ban:BA_5568 KEGG:bar:GBAA_5568 KEGG:bat:BAS5174
ProtClustDB:CLSK917674 BioCyc:BANT260799:GJAJ-5249-MONOMER
BioCyc:BANT261594:GJ7F-5428-MONOMER Uniprot:Q81JX5
Length = 346
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 168 RAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDA 227
+ ++H PGP T IL + + +K V G T VGVR+P+ + A++++ +
Sbjct: 92 KLMEHFWPGPLTIILPRKEGISEK-VTAGLHT--------VGVRMPDHPVALALIEEANV 142
Query: 228 PLISTSVKWLKDNEWMVDPVVIADTYGP--EGLDFVVDGGVR-VAEPSTVVDMTGTYPKI 284
P+ + S + P + + Y E + +VDGG V STV+D T P I
Sbjct: 143 PVAAPSA----NRSGRPSPTLASHVYEDLNEKIAGIVDGGATGVGVESTVIDCTSAVPTI 198
Query: 285 IRQG 288
+R G
Sbjct: 199 LRPG 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 314 314 0.00081 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 613 (65 KB)
Total size of DFA: 223 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.72u 0.14s 25.86t Elapsed: 00:00:01
Total cpu time: 25.72u 0.14s 25.86t Elapsed: 00:00:01
Start: Sat May 11 13:15:33 2013 End: Sat May 11 13:15:34 2013