Query 021316
Match_columns 314
No_of_seqs 154 out of 1315
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11630 hypothetical protein; 100.0 5.1E-55 1.1E-59 395.6 23.1 203 77-296 4-206 (206)
2 COG0009 SUA5 Putative translat 100.0 1.6E-54 3.4E-59 393.2 21.4 205 77-299 3-208 (211)
3 TIGR00057 Sua5/YciO/YrdC/YwlC 100.0 4.7E-53 1E-57 381.2 19.8 196 80-295 1-197 (201)
4 PRK10634 tRNA(ANN) t(6)A37 thr 100.0 1E-50 2.3E-55 363.3 20.7 185 85-288 5-190 (190)
5 PF01300 Sua5_yciO_yrdC: Telom 100.0 3.3E-50 7.2E-55 355.9 16.4 177 95-288 1-179 (179)
6 TIGR00143 hypF [NiFe] hydrogen 100.0 1.7E-37 3.7E-42 324.0 26.4 191 87-299 162-356 (711)
7 KOG3051 RNA binding/translatio 100.0 8.3E-30 1.8E-34 232.9 11.9 192 89-298 17-212 (261)
8 COG0068 HypF Hydrogenase matur 99.9 2.7E-21 5.8E-26 198.0 21.2 191 87-299 197-392 (750)
9 KOG3051 RNA binding/translatio 99.1 1.6E-11 3.5E-16 113.1 1.3 236 45-314 15-261 (261)
10 COG2192 Predicted carbamoyl tr 97.1 0.0097 2.1E-07 61.3 13.9 175 58-265 342-548 (555)
11 cd07985 LPLAT_GPAT Lysophospho 76.6 6.5 0.00014 36.8 6.0 60 85-144 99-170 (235)
12 PF02543 CmcH_NodU: Carbamoylt 45.2 48 0.001 32.7 5.9 64 89-153 253-325 (360)
13 PLN02349 glycerol-3-phosphate 31.8 50 0.0011 33.5 3.5 83 61-145 240-351 (426)
14 COG3108 Uncharacterized protei 31.3 73 0.0016 28.9 4.1 63 48-110 103-171 (185)
15 COG2022 ThiG Uncharacterized e 29.0 1.4E+02 0.0029 28.4 5.6 53 212-266 137-191 (262)
16 cd08205 RuBisCO_IV_RLP Ribulos 25.9 73 0.0016 31.6 3.6 45 218-266 121-168 (367)
17 TIGR00631 uvrb excinuclease AB 25.8 1.9E+02 0.0041 31.1 6.8 87 81-191 9-108 (655)
18 cd08210 RLP_RrRLP Ribulose bis 25.1 71 0.0015 31.8 3.3 45 217-266 116-163 (364)
19 cd00354 FBPase Fructose-1,6-bi 23.7 68 0.0015 31.3 2.8 59 92-152 235-312 (315)
20 COG1638 DctP TRAP-type C4-dica 21.2 7.7E+02 0.017 24.0 11.9 132 69-226 54-186 (332)
21 PF09843 DUF2070: Predicted me 20.2 2E+02 0.0043 25.4 4.9 43 74-116 74-118 (179)
22 PF05951 Peptidase_M15_2: Bact 20.2 1.8E+02 0.0038 25.6 4.4 60 50-109 73-138 (152)
No 1
>PRK11630 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-55 Score=395.60 Aligned_cols=203 Identities=32% Similarity=0.606 Sum_probs=184.7
Q ss_pred EEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCC
Q 021316 77 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP 156 (314)
Q Consensus 77 ~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p 156 (314)
++++++++++.+.+++|+++|++||||+|||||+|||+||++|++||+|||++|+|+.+|||+++|+|++++.+|+. ++
T Consensus 4 ~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~-~~ 82 (206)
T PRK11630 4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD 82 (206)
T ss_pred eEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhc-CC
Confidence 45688889998889999999999999999999999999999999999999999999999999999999999999996 43
Q ss_pred CCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeeccccc
Q 021316 157 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW 236 (314)
Q Consensus 157 ~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~ 236 (314)
+..++++++|||||+|+|+++++.+|+.+ ..++.++||||||+|+++++|++.+|.||++||||+
T Consensus 83 -------~~~~~l~~~~wPGplT~Il~a~~~~p~~~--------~~~~~~tigiRip~~~~~~~L~~~~g~PL~~TSAN~ 147 (206)
T PRK11630 83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRL--------LQEKRKTIGLRVPSNPIALALLEALGEPMLSTSLML 147 (206)
T ss_pred -------HHHHHHHHhcCCCCeEEEEECCCCCCHHH--------cCCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcCc
Confidence 25789999999999999999999999733 134678999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCCCccEEEeCCCCCCCCCeEEEEeCCccEEEEeCCCCCccee
Q 021316 237 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 296 (314)
Q Consensus 237 SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~ 296 (314)
||++.+..+++++.+.|+. .+|+|+|+|...++||||||++++.++|||+|+|+.+.|+
T Consensus 148 sG~~~~~~~~~~i~~~~~~-~vd~ildg~~~~~~pSTIvd~~~~~~~ilR~G~~~~~~~~ 206 (206)
T PRK11630 148 PGSDFTESDPEEIKDRLEK-QVDLIIHGGYLGQQPTTVIDLTDDTPVVVREGVGDVKPFL 206 (206)
T ss_pred CCCCCCCCCHHHHHHHhcC-CceEEEeCCCCCCCCCEEEEccCCceEEEecCCCchhhcC
Confidence 9986545788999998985 7999999998777999999999999999999999987763
No 2
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-54 Score=393.16 Aligned_cols=205 Identities=32% Similarity=0.502 Sum_probs=186.9
Q ss_pred EEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCC
Q 021316 77 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP 156 (314)
Q Consensus 77 ~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p 156 (314)
++.+++++++.+.+++|++.|++|++|+|||||||||+|++.|++||+|||++|+|+.+|||+++|+|+++++.|+. ++
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~-~~ 81 (211)
T COG0009 3 IFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYAD-VP 81 (211)
T ss_pred eeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-CC
Confidence 45677888878899999999999999999999999999999999999999999999999999999999999999997 54
Q ss_pred CCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeeccccc
Q 021316 157 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW 236 (314)
Q Consensus 157 ~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~ 236 (314)
+.+++++++|||||+|||+++++++|.++. +.+.+|||||||+|+++++||+.+|.||++||||+
T Consensus 82 -------~~~~~l~~~fwPGPlT~Il~~~~~~~~~~~--------~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSANl 146 (211)
T COG0009 82 -------DVARKLLKAFWPGPLTFILPATKEVPRRLV--------TAGLSTIAVRVPDHPIALALIEALGEPLASTSANL 146 (211)
T ss_pred -------HHHHHHHHHhCCCCeEEEEeCCCCCChhhh--------cCCCCeEEEECCCCHHHHHHHHHhCCceEEcCcCc
Confidence 368899999999999999999998987653 45678999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcceeeec
Q 021316 237 LKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE 299 (314)
Q Consensus 237 SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~ 299 (314)
||+++ ..+.+++.+.|+. .+|+|+|+|. ..+.||||||++++.++|+|+|.+..++...+.
T Consensus 147 sG~ps-~tt~~ev~~~~~~-~v~~iidgg~~~~g~pSTIiDlt~~~~~ilR~G~i~~~~i~~~~ 208 (211)
T COG0009 147 SGQPS-PTTAEEVRADFGG-QVDLIIDGGPCRGGLPSTIIDLTDDPPRILRPGAISLEEIEKLL 208 (211)
T ss_pred CCCCC-CCCHHHHHHHhcc-cCeEEEeCCccCCCCCceEEECCCCCcEEEeCCCCCHHHHHHHh
Confidence 99984 6789999999985 8999999987 489999999999999999999999987665443
No 3
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=100.00 E-value=4.7e-53 Score=381.19 Aligned_cols=196 Identities=32% Similarity=0.598 Sum_probs=180.1
Q ss_pred eCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCC
Q 021316 80 ADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGD 159 (314)
Q Consensus 80 v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~ 159 (314)
+++++++.+.+++++++|++||||++||||+|||+|+++|++|++|||++|+|+.+|||++||+|++++.+|+. ++.
T Consensus 1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~~-~~~-- 77 (201)
T TIGR00057 1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYAY-VPD-- 77 (201)
T ss_pred CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHhc-CCH--
Confidence 57888898899999999999999999999999999999999999999999999999999999999999999996 553
Q ss_pred CCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCC
Q 021316 160 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 239 (314)
Q Consensus 160 ~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~ 239 (314)
..++++++|||||+|||+++++.+|+.+ ..+.++||||||+|+++++|++.+|.||++||||+||+
T Consensus 78 -----~~~~l~~~~~Pgp~T~Il~~~~~~~~~l---------~~~~~tigiRvP~~~~~~~L~~~~g~PL~~TSAN~sG~ 143 (201)
T TIGR00057 78 -----DAKRLMKKFWPGPLTLVLKKTPEIPRRV---------SGKRKTIGIRVPDNPIALELLEELGKPIVATSANLSGK 143 (201)
T ss_pred -----HHHHHHHhcCCCCeEEEEECCCCCCHhH---------cCCCCeEEEECCCCHHHHHHHHHhCCCEEECCCCCCCC
Confidence 5789999999999999999999999875 34678999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcce
Q 021316 240 NEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYW 295 (314)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~ 295 (314)
+. ..+.+++.+.|+. .+|+|+|+|. ..+.+|||||++++.++|||+|+++ +++
T Consensus 144 ~~-~~~~~~i~~~~~~-~vd~ild~g~~~~~~~STVid~~~~~~~ilR~G~~~-~~i 197 (201)
T TIGR00057 144 PS-ATDVEEAVDELGK-LVDLIIDAGPCLGGEPSTIIDLTDDTPKVLREGVGS-EPI 197 (201)
T ss_pred CC-CCCHHHHHHHhCC-CccEEEcCCCCCCCCCCcEEEccCCceEEEecCCCH-HHH
Confidence 75 6788899998984 7999999995 6789999999999899999999997 543
No 4
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=100.00 E-value=1e-50 Score=363.31 Aligned_cols=185 Identities=23% Similarity=0.362 Sum_probs=165.9
Q ss_pred CChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcH
Q 021316 85 ADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHA 164 (314)
Q Consensus 85 ~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~ 164 (314)
++.+.+++++++|++||||+|||||+|||+|++.|++||+|||++|+|+.+|||++|++|++++.+|+.... ..+
T Consensus 5 ~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~-----~~~ 79 (190)
T PRK10634 5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSM-----LTD 79 (190)
T ss_pred ccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHHHhcC-----CCH
Confidence 457799999999999999999999999999999999999999999999999999999999999999986321 113
Q ss_pred HHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCC
Q 021316 165 NIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV 244 (314)
Q Consensus 165 ~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~ 244 (314)
..++++++|||||+|||+++++.+|+++ +++.++||||||+|+++++|++.+|.||++||||+||++. ..
T Consensus 80 ~~~~l~~~~wPGPlTlil~~~~~~p~~l---------~~~~~tigvRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~~-~~ 149 (190)
T PRK10634 80 AQRETIFSCWPGPVTFVFPAPATTPRWL---------TGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPP-CR 149 (190)
T ss_pred HHHHHHHHhCCCCEEEEEECCCCCCHHH---------cCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcccCCCCC-CC
Confidence 5678999999999999999999999986 3567899999999999999999999999999999999974 67
Q ss_pred CHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeC
Q 021316 245 DPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG 288 (314)
Q Consensus 245 ~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G 288 (314)
+.+++.+.|+. .+| ++|+|. ..+.||||||++++ +|||+|
T Consensus 150 ~~~~i~~~~~~-~v~-i~dg~~~~~~~pSTIvd~~~~--~ilR~G 190 (190)
T PRK10634 150 TVEEVRAQFGA-AFP-VVPGETGGRLNPSEIRDALTG--ELFRQG 190 (190)
T ss_pred CHHHHHHHhCC-CcE-EEcCCCCCCCCCCeEEECCCC--eEEeCC
Confidence 88999888885 788 589986 45799999999844 899998
No 5
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=100.00 E-value=3.3e-50 Score=355.88 Aligned_cols=177 Identities=40% Similarity=0.660 Sum_probs=153.8
Q ss_pred HHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHHHHHHHhcC
Q 021316 95 ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCL 174 (314)
Q Consensus 95 ~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~~~li~~~w 174 (314)
|+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++|+|++++++|+. .+ ..+..++++++||
T Consensus 1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~-~~-----~~~~~~~l~~~~w 74 (179)
T PF01300_consen 1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVD-SP-----VSPKARRLLEKFW 74 (179)
T ss_dssp -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEE-TT-------HHHHHHHHHCH
T ss_pred CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhh-cc-----ccHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999997 11 2357889999999
Q ss_pred CCceEEEecCCCC-CCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCCCHHHHHHHc
Q 021316 175 PGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY 253 (314)
Q Consensus 175 PGPlTlIlpa~~~-lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~~~~i~~~~ 253 (314)
|||+|+|+++++. +|+++ +.+.+|||||||+|+++++|++.+|.||++||||+||+++ ..+.+++.+.|
T Consensus 75 Pgp~t~I~~~~~~~l~~~~---------~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sg~~~-~~~~~~i~~~~ 144 (179)
T PF01300_consen 75 PGPLTLILPAKKENLPKYL---------TSKRGTIGVRIPDHPILRELLEALGGPLISTSANLSGEPP-ATDFEEIIERF 144 (179)
T ss_dssp SSSEEEEEEEGTTCSHHHH---------HTTTSEEEEECHCSHHHHHHHHHHTS-EEEEESSSTTSSC-TTSHHHHHHHH
T ss_pred ccCeeEeeccccccCChhh---------cCCCCeEEEEecChHHHHHHHHhcCCceEecccccccCCC-CCCHHHHHHHh
Confidence 9999999999665 88885 3578999999999999999999999999999999999964 67899999989
Q ss_pred CCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeC
Q 021316 254 GPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG 288 (314)
Q Consensus 254 ~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G 288 (314)
+. .+|+|||+|. ..+.+|||||+++++++|||+|
T Consensus 145 ~~-~vd~iv~~~~~~~~~~STIvd~~~~~~~ilR~G 179 (179)
T PF01300_consen 145 GD-KVDLIVDGGEIPSGQPSTIVDLTNGKPKILREG 179 (179)
T ss_dssp TT-TSSEEEECCHHSSSS--EEEETTSSSSEEEE--
T ss_pred cc-CceEEEECCCCCCCCCCeEEEeeCCceEEEeeC
Confidence 84 8999999995 5789999999999999999998
No 6
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=100.00 E-value=1.7e-37 Score=323.98 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=169.5
Q ss_pred hhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHH
Q 021316 87 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 166 (314)
Q Consensus 87 ~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~ 166 (314)
.+.+++|+++|++|+||++||||+|||+||++|++||+|||++|+|+ +|||++|++|++++++|+. ++ +..
T Consensus 162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~-~~-------~~e 232 (711)
T TIGR00143 162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAE-LN-------NLE 232 (711)
T ss_pred hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhc-CC-------HHH
Confidence 46899999999999999999999999999999999999999999997 7999999999999999996 43 235
Q ss_pred HHHHHhcCCCceEEEecCCC--CCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCC
Q 021316 167 FRAVKHCLPGPYTFILTASK--EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV 244 (314)
Q Consensus 167 ~~li~~~wPGPlTlIlpa~~--~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~ 244 (314)
++++ ..||||+++ +++++ .+|..+ .++.++||||+|+||+++.|++.+|.||++||||+||++. ..
T Consensus 233 ~~lL-~~~~~Pivl-l~~~~~~~l~~~v---------~~~~~tiGvrlP~~pl~~~Ll~~~g~PLv~TSAN~SGep~-~~ 300 (711)
T TIGR00143 233 CELL-TSPAAPIVL-LRKKPDIKLAPNI---------APNLPTIGVMLPYTPLHHLLLQLLAFPLVMTSANLPGLPM-AI 300 (711)
T ss_pred HHHH-HcCCCCEEE-EECCCCCCCChhh---------cCCCCEEEEEcCCCHHHHHHHHHcCCcEEECccCCCCCCC-CC
Confidence 6677 468999864 77765 466664 3577899999999999999999999999999999999975 67
Q ss_pred CHHHHHHHcCCCCccEEEeCCC--CCCCCCeEEEEeCCccEEEEeCCCCCcceeeec
Q 021316 245 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE 299 (314)
Q Consensus 245 ~~~~i~~~~~~~~vDlIvDgg~--~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~ 299 (314)
+.+++.+.++. .+|++++.+. ..+.+||||+++++.++|||+|+|+.|.++.+.
T Consensus 301 ~~~e~~~~l~~-~~D~~L~~~r~i~~~~dsSVV~~~~~~~~ilR~~RG~aP~~~~l~ 356 (711)
T TIGR00143 301 DNAEILDKLQG-IADGFLVHNRRIVNRVDDSVVQHVAGEILFLRRSRGFAPQPLTLP 356 (711)
T ss_pred CHHHHHHHhcC-CccEEEeCCCCcCCCCCCceEEEECCeeEEEeccCCCCCcccccC
Confidence 88888888884 8999998776 468999999999999999999999999999987
No 7
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-30 Score=232.87 Aligned_cols=192 Identities=23% Similarity=0.292 Sum_probs=158.2
Q ss_pred hHHHHHH-HHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhcc-CCCCCCCCcHHH
Q 021316 89 KLEPVVE-LLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG-FPRGDGQGHANI 166 (314)
Q Consensus 89 ~l~~av~-~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~-~p~~~~~~~~~~ 166 (314)
.+..++. +-+.++.+++||||+||++++++|..|+.+||++|+||.++|+++.+.+..+++..... ++. ..
T Consensus 17 ~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~i~~-------~~ 89 (261)
T KOG3051|consen 17 ALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAINIPS-------LY 89 (261)
T ss_pred hhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhcchh-------hh
Confidence 3333444 44559999999999999999999999999999999999999999999999999997763 332 35
Q ss_pred HHHHHhcCCCceEEEecCCCC-CCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCCC
Q 021316 167 FRAVKHCLPGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVD 245 (314)
Q Consensus 167 ~~li~~~wPGPlTlIlpa~~~-lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~ 245 (314)
..|++.+||||+|++++..+. +++.+ +.+..++|+|||+|+++++|++++|.|+..||||.|+.+.+...
T Consensus 90 ~~L~~~l~PGPltlll~~~~~~l~~~~---------~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tla 160 (261)
T KOG3051|consen 90 LPLASYLWPGPLTLLLERADECLSKLT---------NPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTLA 160 (261)
T ss_pred hHHHhhcCCCceEEEeecchhhccccc---------cCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcch
Confidence 579999999999999999885 66642 45667899999999999999999999999999999999864344
Q ss_pred HHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcceeee
Q 021316 246 PVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEE 298 (314)
Q Consensus 246 ~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~ 298 (314)
...+++... ++++|+|||. ..+++||+++...+...|+|+|.+..++++..
T Consensus 161 i~~~~Dl~~--~i~lilDgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~vv~ 212 (261)
T KOG3051|consen 161 IHVFADLQP--KIPLILDGGACGSGVESTVVEGSTDPVDILRPGGITGEDIVVR 212 (261)
T ss_pred hhhhhhhcc--chhheecCcccccCcCceeeccccCcceeeccCCccceeEEEe
Confidence 444455443 6999999996 57889999988887888888887776665554
No 8
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-21 Score=198.03 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=159.7
Q ss_pred hhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHH
Q 021316 87 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 166 (314)
Q Consensus 87 ~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~ 166 (314)
..++.++++.|+.|+++++..-.+|+|+||+.|.+||++|++.|+|| .|||++|+.|++.+++|+. +. +..
T Consensus 197 ~~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~-~~-------~~E 267 (750)
T COG0068 197 NEAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAE-VN-------DEE 267 (750)
T ss_pred hHHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhc-cC-------HHH
Confidence 34889999999999999999999999999999999999999999998 9999999999999999986 32 345
Q ss_pred HHHHHhcCCCceEEEecCCCC--CCcchhccCccceecCCCCeEEEEecChHHHHHHHH-hCCCceeecccccCCCCCCC
Q 021316 167 FRAVKHCLPGPYTFILTASKE--VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQ-KMDAPLISTSVKWLKDNEWM 243 (314)
Q Consensus 167 ~~li~~~wPGPlTlIlpa~~~--lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~-~~G~PL~sTSAN~SG~~~~~ 243 (314)
.+++.. ---|++ ++++++. ++.. ..++.++|||++|.+|++..|++ ....|+++||||+||+|. .
T Consensus 268 ~~lL~S-~~rPIV-ll~Kk~~~~~~~~---------iAP~l~~iGVMLPYtpLhhLLl~~~~~~~~VmTSaNl~g~Pm-~ 335 (750)
T COG0068 268 EELLTS-PSRPIV-LLKKKKVFLLESN---------IAPGLHTIGVMLPYTPLHHLLLQESLDIPYVMTSANLPGEPM-A 335 (750)
T ss_pred HHHhcC-ccCceE-Eeccccccccccc---------cCCCCCCcceeecCCchhhhhhhhccCceEEEecCCCCCCCc-c
Confidence 555542 233554 4555443 2332 24678899999999999999999 777899999999999986 4
Q ss_pred CCHHHHHHHcCCCCccEEEeCCCC--CCCCCeEEEEeCCccEEEEeCCCCCcceeeec
Q 021316 244 VDPVVIADTYGPEGLDFVVDGGVR--VAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE 299 (314)
Q Consensus 244 ~~~~~i~~~~~~~~vDlIvDgg~~--~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~ 299 (314)
.+.+++.+.+. ...|+.+..++. .....+||.+.++...+||+.+|+.|.++++.
T Consensus 336 ~dN~eal~kL~-~IADyfL~HNR~I~~r~DDSVVrvV~g~~~~iRrSRGy~P~pi~lp 392 (750)
T COG0068 336 IDNEEALEKLK-GIADYFLLHNREIVNRCDDSVVRVVAGRIAFIRRSRGYAPKPIELP 392 (750)
T ss_pred cCCHHHHHHhh-hhhheeeecccccccccCCcceeEeCCceeeeehhcCCCCcceecC
Confidence 56666667666 378999998864 57889999999999999999999999999995
No 9
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.6e-11 Score=113.12 Aligned_cols=236 Identities=24% Similarity=0.158 Sum_probs=183.4
Q ss_pred CCceeEEEEeeecCccccccCCCCcccCCceEEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHH
Q 021316 45 PSRFRIVAMTVKRSPKRLKYSAPRFTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIE 124 (314)
Q Consensus 45 ~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVe 124 (314)
.+++...|++.++.+||.+|.++.+.+.+...|.+.++..-..|....+.+.|..+-.-+.+++++|.. ++.
T Consensus 15 ~~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~--------~i~ 86 (261)
T KOG3051|consen 15 SPALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAI--------NIP 86 (261)
T ss_pred chhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhh--------cch
Confidence 678889999999999999999999999999999999999999999999999999999999999999988 277
Q ss_pred HHHH--HhcCCCCCCeEEEeCChHH-Hhhhh--------ccCCCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchh
Q 021316 125 RLRR--IKNVEPSKPLSILCRSLRD-IDTYT--------TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCV 193 (314)
Q Consensus 125 rL~~--iK~R~~~KPl~llv~sl~~-l~~~~--------~~~p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~ 193 (314)
|+|+ +|.- .--|+.+|....++ +.... -.+|. +..+.+++.++ -+|
T Consensus 87 ~~~~~L~~~l-~PGPltlll~~~~~~l~~~~~~~~~svAvRiP~-----~~~a~~li~~~-~~P---------------- 143 (261)
T KOG3051|consen 87 SLYLPLASYL-WPGPLTLLLERADECLSKLTNPGLPSVAVRIPD-----HPVASALIPKL-GVP---------------- 143 (261)
T ss_pred hhhhHHHhhc-CCCceEEEeecchhhccccccCCCcceeEEccC-----CHHHHHHHHHh-CCC----------------
Confidence 8887 6643 34688888876654 22211 11221 11233333322 122
Q ss_pred ccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCCCHHHHHHHcCCCCccEEEeCCCCCCCCCe
Q 021316 194 RYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPST 273 (314)
Q Consensus 194 ~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~~~~~pST 273 (314)
++.+.+..+++.+.++++-....++..+..+--+..++|.--|...++++|+..|....+....|+|+++|+ ..+||
T Consensus 144 -la~tSAN~Ssr~s~tlai~~~~Dl~~~i~lilDgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~vv~gGc--a~~~t 220 (261)
T KOG3051|consen 144 -LALTSANASSRPSPTLAIHVFADLQPKIPLILDGGACGSGVESTVVEGSTDPVDILRPGGITGEDIVVRGGC--AVEST 220 (261)
T ss_pred -ccccccccccCCCCcchhhhhhhhccchhheecCcccccCcCceeeccccCcceeeccCCccceeEEEecCc--cceee
Confidence 222233455677889999999999888888877888998876666677888888888777656799999995 78999
Q ss_pred EEEEeCCccEEEEeCCCCCcceeeecCCCcccccccCcCCC
Q 021316 274 VVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT 314 (314)
Q Consensus 274 IVdlt~~~~~ILR~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (314)
++|+++...+++|+|..+...|+..+.|....-+++|.+|+
T Consensus 221 ~~~~~~~~~~~~~pG~~~~h~s~~~~~~~f~~~~e~~~~g~ 261 (261)
T KOG3051|consen 221 KVDMTEPGEKVITPGMKYRHYSPTAKVDLFVLRTELDASGT 261 (261)
T ss_pred eecccCCcceeecCCccccccchhhhhhhhccchhhhhccC
Confidence 99999999999999999999999999988434488888875
No 10
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0097 Score=61.28 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=117.9
Q ss_pred Cccccc--cCCCCcccC----------CceEEEEeCCCCCChhhHHHHHHHHHcCCEEE-EecCcEEE--------EEcc
Q 021316 58 SPKRLK--YSAPRFTKE----------GGLMYVEADPSGADSWKLEPVVELLKEGAVGV-VPTDTLYA--------IVCD 116 (314)
Q Consensus 58 ~~kr~~--~~~~~~~~~----------~~~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi-~PTDTvYg--------L~cd 116 (314)
+|.|+. |-++.|..+ +++.|..++. ..+.+++.|.+|.||. +..--=|| |.+|
T Consensus 342 ~~~~l~~~ylGp~ys~~~ve~~L~~~~~~~~y~~~~~------l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSILad 415 (555)
T COG2192 342 RPPRLEHVYLGPEYSDEEVEKALKRHAPDLEYERVDD------LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSILAD 415 (555)
T ss_pred CcccccccccCcccChHHHHHHHhhhccCceEEeccc------HHHHHHHHHhCCCeEEEEeeccccCccccCCceeecC
Confidence 356665 555555433 3445665553 6778999999999865 55555554 8999
Q ss_pred cCChHHHHHHHHHhc-CCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHHHHHHHhcCCCc-eEEEecCCC----CCCc
Q 021316 117 LKSHSAIERLRRIKN-VEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGP-YTFILTASK----EVPK 190 (314)
Q Consensus 117 a~n~~AVerL~~iK~-R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~~~li~~~wPGP-lTlIlpa~~----~lP~ 190 (314)
|.++...+||....+ |+.=.||+-.+- -|...+|.+ .--|-| .|+++..++ .+|.
T Consensus 416 Pr~~~~kd~iN~~vK~Re~FrPFAPsiL-~E~~~~~fe------------------~~~~sPyM~~~~~~~~~~r~~lpa 476 (555)
T COG2192 416 PRDPGMKDKINLKVKFREGFRPFAPSIL-EEDVERYFE------------------LPSPSPYMTLVFRVREEFRERLPA 476 (555)
T ss_pred CCChHHHHHHHHHhcccCccCCcCcchh-hhhhhHHhh------------------CCCCCCceeeeehhhHHHHhhCCc
Confidence 999999999998877 999999976654 234444432 223556 588888765 3666
Q ss_pred chhccCccceecCCCCeEEEEecChHHHHHHHHh----CCCc-eeecccccCCCCCCCCCHHHHHHHcCCCCccEEEeCC
Q 021316 191 KCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQK----MDAP-LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 265 (314)
Q Consensus 191 ~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~----~G~P-L~sTSAN~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg 265 (314)
.+.-.|++. .--|+=-.+|....||+. +|.| |+-||-|..|+|. +.+|.++-..|..-++|+.|-++
T Consensus 477 V~HvDgTaR-------~QtV~r~~nP~y~~ll~aF~~~TG~gvllNTSFN~~GEPI-Vcsp~DA~~~f~~t~~d~Lvi~~ 548 (555)
T COG2192 477 VTHVDGTAR-------PQTVRRDANPRYYGLLRAFKERTGVGVLLNTSFNVHGEPI-VCSPADAIRTFLSTGLDALVLED 548 (555)
T ss_pred eEeecCCcc-------ceeeccccChhHHHHHHHHHHhcCCcEEEecccccCCCce-ecCHHHHHHHHHhCCCcEEEEcC
Confidence 542233322 233455567777777765 4777 8899999999985 56777776666555788876554
No 11
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=76.65 E-value=6.5 Score=36.84 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=44.2
Q ss_pred CChhhHHHHHHHHHcCCE--EEEecCcEEE------EEcccCChHHHHHHHHHhcCCCCC----CeEEEeCC
Q 021316 85 ADSWKLEPVVELLKEGAV--GVVPTDTLYA------IVCDLKSHSAIERLRRIKNVEPSK----PLSILCRS 144 (314)
Q Consensus 85 ~~~~~l~~av~~Lk~GgV--Vi~PTDTvYg------L~cda~n~~AVerL~~iK~R~~~K----Pl~llv~s 144 (314)
.|..+++.+.++|++|+. .|||.-|-.- +.-.+++.++++-.+.+=++.... |+++++.|
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~Plai~~yd 170 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLYPMALLTYD 170 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHHHHHHHHhcCCCceEEeeEEEeec
Confidence 667789999999999985 5889866542 223468899999888888776443 57777654
No 12
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=45.24 E-value=48 Score=32.75 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=44.6
Q ss_pred hHHHHHHHHHcCCEEEEe-cCcEE--------EEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhc
Q 021316 89 KLEPVVELLKEGAVGVVP-TDTLY--------AIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 153 (314)
Q Consensus 89 ~l~~av~~Lk~GgVVi~P-TDTvY--------gL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~ 153 (314)
..++++++|.+|+||..= .-.=| .|.+||.+.+..+||.+.|||+.-.||+=.+- .|.+.+|.+
T Consensus 253 ~~~~~A~lLa~gkiVgwfqGr~EfGPRALGnRSILAdP~~~~~~d~iN~~iKRE~fRPfAPsvl-~E~a~~~f~ 325 (360)
T PF02543_consen 253 LAEQVAELLADGKIVGWFQGRMEFGPRALGNRSILADPRSPDMKDRINRRIKREWFRPFAPSVL-EEDAEEYFE 325 (360)
T ss_dssp HHHHHHHHHHTT--EEEE-SS-B-SSS--SSEEEEEESS-SSHHHHHHHTTS--TT---EEEEE-HHHHHHHBS
T ss_pred HHHHHHHHHHcCCEEEEEecCccccCccccccccccCCCChHHHHHHhhhcCccccCCcCcchh-HHHHHHhcc
Confidence 678899999999987643 33333 59999999999999999999999999998876 677788765
No 13
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=31.83 E-value=50 Score=33.49 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred ccccCC--CCcccCCceE--EEEeCC-CCCCh---------hhHHHHHHHHHcCCEEEE-----------ecCcEEEEEc
Q 021316 61 RLKYSA--PRFTKEGGLM--YVEADP-SGADS---------WKLEPVVELLKEGAVGVV-----------PTDTLYAIVC 115 (314)
Q Consensus 61 r~~~~~--~~~~~~~~~~--~~~v~~-~~~~~---------~~l~~av~~Lk~GgVVi~-----------PTDTvYgL~c 115 (314)
|..++. .+|.-+..++ |.+=|= ++|+. ++++.+...|++||.++. |-+.- +.-
T Consensus 240 rv~~DpL~~PFSmGrNLlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~Gg~~iwIaPsGgRdR~d~~~g~--~~p 317 (426)
T PLN02349 240 RVVTDPLCKPFSMGRNLICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLREGGQLIWIAPSGGRDRPDPLTGE--WTP 317 (426)
T ss_pred eEeeccccCccccCCceEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCccCCC--ccC
Confidence 455553 4476666664 333222 23332 357778889999997666 31222 345
Q ss_pred ccCChHHHHHHHHHhcCCCCC----CeEEEeCCh
Q 021316 116 DLKSHSAIERLRRIKNVEPSK----PLSILCRSL 145 (314)
Q Consensus 116 da~n~~AVerL~~iK~R~~~K----Pl~llv~sl 145 (314)
+++|.++|+..+++=++...+ ||+++|.|+
T Consensus 318 apFD~~svd~mR~l~~~s~~ptHfYPlAl~~yDI 351 (426)
T PLN02349 318 APFDPSAVDNMRRLTEKSKAPGHFYPLAMLSYDI 351 (426)
T ss_pred CCCChHHHHHHHHHHHhcCCCccccchHHHhCcc
Confidence 679999999999998776333 566666553
No 14
>COG3108 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.28 E-value=73 Score=28.89 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=42.4
Q ss_pred eeEEEEeeecCccccccCCCC----cccCCceE--EEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcE
Q 021316 48 FRIVAMTVKRSPKRLKYSAPR----FTKEGGLM--YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTL 110 (314)
Q Consensus 48 ~~~~~~~~~~~~kr~~~~~~~----~~~~~~~~--~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTv 110 (314)
..|+.+..+|+|+..+---.+ -.|.-++. -..+.-++-..|.|.+++.-++.|||.-||+-..
T Consensus 103 ~~i~V~SGYRSPatNr~lr~~s~gvAk~S~Hm~g~AmD~~i~gV~l~~lr~~~~~~~~GGVGyYp~s~s 171 (185)
T COG3108 103 RPVQVTSGYRSPATNRMLRSRSRGVAKKSLHMLGQAMDFQIPGVSLWELRNAALSMQGGGVGYYPHSNS 171 (185)
T ss_pred cceEEEeeccChhhhHHHHhhcccchhccccccceeeeeecCCccHHHHHHHHHhCcCCceeeccCCCc
Confidence 567777789999987633111 11111221 1233355677899999999999999999998655
No 15
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=28.98 E-value=1.4e+02 Score=28.44 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=33.8
Q ss_pred ecChHHHHHHHHhCCCceeeccccc--CCCCCCCCCHHHHHHHcCCCCccEEEeCCC
Q 021316 212 IPNDAICQAILQKMDAPLISTSVKW--LKDNEWMVDPVVIADTYGPEGLDFVVDGGV 266 (314)
Q Consensus 212 iP~~~i~~~Ll~~~G~PL~sTSAN~--SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~ 266 (314)
+.+++++.+=++..|.--++.=+-. ||.. +.+++.+.-+.....|.+|||.|.
T Consensus 137 ~~dD~v~arrLee~GcaavMPl~aPIGSg~G--~~n~~~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 137 TTDDPVLARRLEEAGCAAVMPLGAPIGSGLG--LQNPYNLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred cCCCHHHHHHHHhcCceEeccccccccCCcC--cCCHHHHHHHHHhCCCCEEEeCCC
Confidence 4467777666777885444443332 4443 456777766555447899999997
No 16
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=25.85 E-value=73 Score=31.59 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHHHhCCCceeecccccCCCCCCCCCHHHHHHH---cCCCCccEEEeCCC
Q 021316 218 CQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADT---YGPEGLDFVVDGGV 266 (314)
Q Consensus 218 ~~~Ll~~~G~PL~sTSAN~SG~~~~~~~~~~i~~~---~~~~~vDlIvDgg~ 266 (314)
.|+++...++|++.|-.+..+.- |++...+. +-..++|+|.|.|.
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gl----d~~~la~~~~~l~~gGvD~Ikdde~ 168 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGL----SPEELAELAYELALGGIDLIKDDEL 168 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCC----CHHHHHHHHHHHHhcCCCeeecccc
Confidence 57888899999999999977553 45555433 22258999987764
No 17
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=25.75 E-value=1.9e+02 Score=31.10 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=58.3
Q ss_pred CCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCC
Q 021316 81 DPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDG 160 (314)
Q Consensus 81 ~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~ 160 (314)
.|.+.|..++++.++.+++|.--. +++|+...... -.+..+++ + .++|+.|++.|-..+.++..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~----~l~Gvtgs~kt-~~~a~~~~--~--~~~p~Lvi~~n~~~A~ql~~------- 72 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQ----TLLGVTGSGKT-FTMANVIA--Q--VNRPTLVIAHNKTLAAQLYN------- 72 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcE----EEECCCCcHHH-HHHHHHHH--H--hCCCEEEEECCHHHHHHHHH-------
Confidence 488889999999999998884211 36777665322 22233332 2 36799999999888877654
Q ss_pred CCcHHHHHHHHhcCCCceEEEe-------------cCCCCCCcc
Q 021316 161 QGHANIFRAVKHCLPGPYTFIL-------------TASKEVPKK 191 (314)
Q Consensus 161 ~~~~~~~~li~~~wPGPlTlIl-------------pa~~~lP~~ 191 (314)
-++.|+|..-...+ |..+.+|..
T Consensus 73 --------el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k 108 (655)
T TIGR00631 73 --------EFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEK 108 (655)
T ss_pred --------HHHHhCCCCeEEEEeeecccCCccccCCCccccccc
Confidence 23457788766666 777766554
No 18
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=25.15 E-value=71 Score=31.75 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCceeecccccCCCCCCCCCHHHHHHHc---CCCCccEEEeCCC
Q 021316 217 ICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY---GPEGLDFVVDGGV 266 (314)
Q Consensus 217 i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~~~~i~~~~---~~~~vDlIvDgg~ 266 (314)
-.|+++...++||++|-....|- ++++..+.. -..++|+|-|.+.
T Consensus 116 g~R~~lgv~~rPl~~tiiKP~GL-----~~~~~a~~~~~~~~gGvD~IKdDe~ 163 (364)
T cd08210 116 GLRALLGIPERPLLCSALKPQGL-----SAAELAELAYAFALGGIDIIKDDHG 163 (364)
T ss_pred HHHHHhCCCCCceEEEEeccccC-----CHHHHHHHHHHHHhcCCCeeecCcc
Confidence 45788999999999999987644 455554432 2258999987764
No 19
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=23.72 E-value=68 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHcCCEEEEecCcEEE---------E----------EcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhh
Q 021316 92 PVVELLKEGAVGVVPTDTLYA---------I----------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 152 (314)
Q Consensus 92 ~av~~Lk~GgVVi~PTDTvYg---------L----------~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~ 152 (314)
.+-+.|..|||..||.|+.|. . +..+++. .+||..++=...++--.++++|.++++++.
T Consensus 235 D~hr~L~~GGif~yP~~~~~~~gkLRllyEa~P~afi~EqAGG~as~G--~~~iLdi~p~~~hqR~p~~~GS~~eV~~~~ 312 (315)
T cd00354 235 DVHRILVRGGIFLYPADKKSPKGKLRLLYEANPMAFLVEQAGGKATDG--KERILDIVPTSLHQRVPVILGSKEEVERVE 312 (315)
T ss_pred HhHHhhhcCeEEEccCCCCCCCCcEeeeeeccHHHHHHHHhCCeecCC--CccccccCCCccccCCCeEEeCHHHHHHHH
Confidence 445667789999999999642 1 2222333 379999998889999999999999988764
No 20
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.22 E-value=7.7e+02 Score=24.02 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=68.9
Q ss_pred cccCCceEEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHH
Q 021316 69 FTKEGGLMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDI 148 (314)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l 148 (314)
-.|.+|-+.++|.|++.=- .-.+.++.|+.|.+=+.=+.+.+-=.-. ++ -.=--+..++.|.+++
T Consensus 54 ~ekt~G~l~i~vfP~~qLG-~~~~~ie~l~~G~id~~~~s~~~l~~~~---P~-----------~~v~~lPflf~d~~~~ 118 (332)
T COG1638 54 EEKTGGRLKIEVFPNSQLG-GEAEMIEQLRSGTLDIGVVSLGFLAGLV---PE-----------FGVFDLPFLFRDEEHA 118 (332)
T ss_pred HHHhCCeEEEEECCCcccC-cHHHHHHHHhcCCeeEEeccchhhcccC---Cc-----------ceeecCCeeeCCHHHH
Confidence 3455677888888866433 5557788899998754433322211111 10 0012466788999999
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccce-ecCCCCeEEEEecChHHHHHHHHhCC
Q 021316 149 DTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA-KYSLRKHVGVRIPNDAICQAILQKMD 226 (314)
Q Consensus 149 ~~~~~~~p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~-~~~~~~tIgVRiP~~~i~~~Ll~~~G 226 (314)
.++.+. + ..+.+.+-+++- -+..+..+.. =.+.+++ ..... .-..-+.+-||+|+++...+.++.+|
T Consensus 119 ~~~~~~-~-----~g~~l~~~~e~~---g~~~l~~~~~-G~R~~t~-~k~PI~~peDlkGlkiRv~~s~~~~~~~~a~G 186 (332)
T COG1638 119 RRVLDS-E-----FGEELLKSLEAK---GLKGLAFWEN-GFRQFTS-NKRPIKTPEDLKGLKIRVPQSPLLLAMFKALG 186 (332)
T ss_pred HHHHcc-H-----HHHHHHHHHHHc---CCEEEEEecC-ceeeeec-CCCCCCChHHhCCCeeecCCCHHHHHHHHHcC
Confidence 998761 1 112233333332 2222211110 0000000 00000 00123458999999999999999999
No 21
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=20.20 E-value=2e+02 Score=25.43 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=35.2
Q ss_pred ceEEEEeCCCCCChhhHHHHHHHHHc--CCEEEEecCcEEEEEcc
Q 021316 74 GLMYVEADPSGADSWKLEPVVELLKE--GAVGVVPTDTLYAIVCD 116 (314)
Q Consensus 74 ~~~~~~v~~~~~~~~~l~~av~~Lk~--GgVVi~PTDTvYgL~cd 116 (314)
...|+-+|.+|.+++.-+++.+.+.+ ..+.++-|||.+--+-.
T Consensus 74 ~~~lv~~DsNNm~~~lr~~i~~~~~~~~d~~ev~TTDtH~~~~~~ 118 (179)
T PF09843_consen 74 RSALVLADSNNMEPGLREKIREALGDVVDEVEVMTTDTHFVNGES 118 (179)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHhhhcceeEEecCcccEEccEE
Confidence 45688899999999888888888885 57999999998865553
No 22
>PF05951 Peptidase_M15_2: Bacterial protein of unknown function (DUF882); InterPro: IPR010275 This family consists of proteins related to metallopeptidases belong to MEROPS peptidase family M15A. They are classed as non-peptidase homologues (M15A.UNA) and include A3D3U2 from SWISSPROT, where the metal ligands (marked by *) are conserved but the catalytic Asn has been replaced by Asp (+): 70 80 90 100 110 120 A3D3U2: QSKVLNDFNHLLRDHRQNVAAPMDKRLFDLLYSLKTTLNVDDEIHVISGYRSPKTNAMLA : .:. .:. : :.: ::.:: . :: . B1W1A6: PELNTCNSTWAGGKVAAGTARANALSSMWKLEALRHALG-DRSIRVTSGFRSASCNAAV- 20 30 40 50 60 70 * 130 * 140 150 160 170 * + A3D3U2: SNSGGVAKKSYHMRGMAMDIAIPSVKLKTLREAALSLKLGGV---GYYPNSGFVHVDCGP :: :..: :: : :.:.. .: :: . : . :. :: .. :::. :: B1W1A6: ---GG-ASNSRHMYGDAVDLGASPHSLCTLAKQARYHGFRGILGPGYVGHNDHVHVNQGP 80 90 100 110 120 B1W1A6 from SWISSPROT belongs to IPR013230 from INTERPRO, whcih contains peptidases belonging to the M15A family. The function of the proteins in this entry are not known.
Probab=20.19 E-value=1.8e+02 Score=25.61 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEeeecCccccccCCC---Cccc-CCceE--EEEeCCCCCChhhHHHHHHHHHcCCEEEEecCc
Q 021316 50 IVAMTVKRSPKRLKYSAP---RFTK-EGGLM--YVEADPSGADSWKLEPVVELLKEGAVGVVPTDT 109 (314)
Q Consensus 50 ~~~~~~~~~~kr~~~~~~---~~~~-~~~~~--~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDT 109 (314)
+.-+.-+|+|+-..--.. .--| .-.|. =+.+.-.+-+...+.+++..|+.|||..||+..
T Consensus 73 i~iiSGYRsp~TN~~Lr~~~~gvA~~S~Hm~G~AiDi~ipgv~~~~l~~~A~~l~~GGVG~Yp~s~ 138 (152)
T PF05951_consen 73 IQIISGYRSPETNAMLRRRSGGVAKNSLHMQGKAIDIRIPGVPLRQLRRAALSLQRGGVGYYPRSG 138 (152)
T ss_pred EEEEeecCCHHHHHHHHhcCCCccccCccccceEEEEecCCCCHHHHHHHHHHcCCCeEEeeCCCC
Confidence 444457999987543211 1111 11332 345555667788999999999999999999865
Done!