Query 021316
Match_columns 314
No_of_seqs 154 out of 1315
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 100.0 4.7E-53 1.6E-57 381.2 25.5 203 76-295 3-205 (206)
2 1jcu_A Conserved protein MTH16 100.0 2.1E-52 7.2E-57 377.6 17.1 205 75-301 1-206 (208)
3 2eqa_A Hypothetical protein ST 100.0 2.3E-51 8E-56 396.3 21.3 207 76-300 3-210 (352)
4 1hru_A YRDC gene product; prot 100.0 1.5E-48 5.2E-53 347.0 15.0 184 82-286 2-188 (188)
5 3vth_A Hydrogenase maturation 100.0 3.3E-41 1.1E-45 352.7 23.0 197 81-300 197-396 (761)
6 3ttc_A HYPF, transcriptional r 100.0 2.9E-39 9.9E-44 333.0 20.6 184 87-300 111-297 (657)
7 3l7v_A Putative uncharacterize 100.0 1.7E-40 5.8E-45 313.3 6.9 195 88-302 44-271 (295)
8 4g9i_A Hydrogenase maturation 100.0 1.6E-32 5.4E-37 288.0 19.7 196 87-302 200-398 (772)
9 3ven_A O-carbamoyltransferase 97.2 0.0011 3.9E-08 67.5 10.2 150 89-265 398-567 (576)
10 1hq0_A CNF1, cytotoxic necroti 28.1 23 0.00079 32.9 1.8 32 202-239 116-147 (295)
11 2bh1_X General secretion pathw 23.8 2.2E+02 0.0074 20.8 7.1 55 95-153 20-77 (96)
12 1iuq_A Glycerol-3-phosphate ac 20.3 81 0.0028 30.2 4.0 50 87-137 209-267 (367)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=4.7e-53 Score=381.22 Aligned_cols=203 Identities=32% Similarity=0.610 Sum_probs=186.1
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccC
Q 021316 76 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 155 (314)
Q Consensus 76 ~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~ 155 (314)
.++++++++++.+.+++|+++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|++++.+|+. +
T Consensus 3 ~~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~-~ 81 (206)
T 1k7j_A 3 QFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-V 81 (206)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC-C
T ss_pred ceEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhc-C
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccc
Q 021316 156 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 235 (314)
Q Consensus 156 p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN 235 (314)
+ +..++++++|||||+|||+++++.+|+++. .++.+|||||+|+||++++|++.+|.||++||||
T Consensus 82 ~-------~~~~~ll~~~~PGp~T~il~~~~~~p~~~~--------~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN 146 (206)
T 1k7j_A 82 D-------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLM 146 (206)
T ss_dssp C-------HHHHHHHHTSCSSSEEEEEEBCTTSCGGGS--------CTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECB
T ss_pred C-------HHHHHHHHcCCCCCeEEEEECCCCCCHHHc--------CCCCCeEEEEecCCHHHHHHHHHhCCceEECCcc
Confidence 4 367899999999999999999999998532 3467899999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHcCCCCccEEEeCCCCCCCCCeEEEEeCCccEEEEeCCCCCcce
Q 021316 236 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYW 295 (314)
Q Consensus 236 ~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~~~~~pSTIVdlt~~~~~ILR~G~~~~~~~ 295 (314)
+||++.+..+++++.+.|+. .+|+|+|+|.....+|||||++++.++|||+|+|+.+.+
T Consensus 147 ~sG~~~p~~~~~~~~~~l~~-~vd~ild~g~~~~~~STVvd~~~~~~~ilR~G~g~~~~~ 205 (206)
T 1k7j_A 147 LPGSEFTESDPEEIKDRLEK-QVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPF 205 (206)
T ss_dssp CTTCSSBCCCHHHHHHHHTT-TCSEEEECCCCCSCCCEEEECGGGCCEEEECCSSCSGGG
T ss_pred cCCCCCCCCCHHHHHHHhCC-CCcEEEeCCCCCCCCCeEEEeeCCcEEEEEeCCCChHHc
Confidence 99997656789999998974 899999999766789999999988899999999987554
No 2
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=2.1e-52 Score=377.60 Aligned_cols=205 Identities=27% Similarity=0.482 Sum_probs=186.7
Q ss_pred eEEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhcc
Q 021316 75 LMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 154 (314)
Q Consensus 75 ~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~ 154 (314)
|++++++++|++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|++++.+|+.
T Consensus 1 ~~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~- 79 (208)
T 1jcu_A 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSR- 79 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEE-
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeeccc
Q 021316 155 FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234 (314)
Q Consensus 155 ~p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSA 234 (314)
++ +..++++++|||||+|||+++++.+|+.+ .++.+|||||+|+||++++|++.+ ||++|||
T Consensus 80 ~~-------~~~~~ll~~~wPgp~T~il~~~~~~p~~v---------~~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSA 141 (208)
T 1jcu_A 80 PS-------GDAMELMERILPGPYTVVLERNELIPDVI---------TGGSSRVGIRVPDDEICRRIAARF--PVTATSA 141 (208)
T ss_dssp CC-------HHHHHHHHHSCSSSEEEEEEECSCCCHHH---------HTTTTEEEEECCSCHHHHHHHHHS--CEEEEEC
T ss_pred CC-------HHHHHHHHhcCCCCeEEEEeCCccCCHhh---------cCCCCeEEEEeCCCHHHHHHHHHh--HHHccCc
Confidence 54 35789999999999999999999999985 356789999999999999999999 9999999
Q ss_pred ccCCCCCCCCCHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcceeeecCC
Q 021316 235 KWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDA 301 (314)
Q Consensus 235 N~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~~~ 301 (314)
|+||++. ..+++++.+.| . .+|+|||+|. ..+.+|||||++++.++|||+|+|+.+++....++
T Consensus 142 N~sG~p~-~~~~~~~~~~l-~-~vd~ild~g~~~~~~~STVvd~~~~~~~ilR~G~~~~~~i~~~~~~ 206 (208)
T 1jcu_A 142 NISGKPP-SPRLEEIVRDL-D-AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVLLRGAG 206 (208)
T ss_dssp CSSSCCS-CSCHHHHHHHS-S-SSEECCSSCCCSCSCCCEEECCCSSSCCEEECCCSSCCCCCSCCCC
T ss_pred ccCCCCC-CCCHHHHHHHh-C-cCCEEEeCCCccCCCCCEEEEeeCCcEEEEecCCCCHHHHHhccCC
Confidence 9999985 57899998888 4 8999999995 67899999999988899999999998766555443
No 3
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=100.00 E-value=2.3e-51 Score=396.26 Aligned_cols=207 Identities=19% Similarity=0.323 Sum_probs=187.8
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccC
Q 021316 76 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 155 (314)
Q Consensus 76 ~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~ 155 (314)
.+++|+++|++.+.+++|+++|++||+|+|||||+|||+||++|++||+|||++|+|+.+|||+++|+|++++.+|+..+
T Consensus 3 ~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i 82 (352)
T 2eqa_A 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDI 82 (352)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999545
Q ss_pred CCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccc
Q 021316 156 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 235 (314)
Q Consensus 156 p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN 235 (314)
+ +.+++++++|||||+|||+|+++.+|+.+ +++.+|||||||+||++++|++.+|.||++||||
T Consensus 83 ~-------~~~~~Ll~~fwPGPlTlIlp~~~~lp~~v---------~~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN 146 (352)
T 2eqa_A 83 P-------DKVLEIAQIVWPGPLTFVLKKTERVPKEV---------TAGLDTVAVRMPAHPIALQLIRESGVPIAAPSAN 146 (352)
T ss_dssp C-------HHHHHHHHHHCSSSEEEEEEECTTSCHHH---------HTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSS
T ss_pred C-------HHHHHHHHhCCCCCEEEEEECCCcCCHhH---------cCCCCeEEEEccCcHHHHHHHHHhCCcEEECccc
Confidence 5 36789999999999999999999999885 3578899999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcceeeecC
Q 021316 236 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 300 (314)
Q Consensus 236 ~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~~ 300 (314)
+||++. .++.+++.+.|+. .+|+|||+|. ..+.+|||||++++.++|||+|.+..+++..+..
T Consensus 147 ~SG~p~-~t~~~~v~~~l~~-~vd~iLdgg~~~~g~~STVvd~~~~~~~iLR~G~i~~e~i~~~l~ 210 (352)
T 2eqa_A 147 LATRPS-PTKAEDVIVDLNG-RVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFG 210 (352)
T ss_dssp CTTSCC-CCSHHHHHHHHTT-TSSEEEECCCCSSCSCCEEEECSCCC-EEEECCSSCHHHHHHHCT
T ss_pred cCCCCC-CCCHHHHHHHhcC-cCCEEecCCccCCCCCCeeEECCCCceEEEcCCCCCHHHHHHHhC
Confidence 999985 4678888888874 8999999997 4689999999998899999999998776655543
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=1.5e-48 Score=347.01 Aligned_cols=184 Identities=21% Similarity=0.332 Sum_probs=165.5
Q ss_pred CCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhcc--CCCCC
Q 021316 82 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG--FPRGD 159 (314)
Q Consensus 82 ~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~--~p~~~ 159 (314)
+++++.+.+++++++|++||||+|||||+|||+||++|++|++|||++|+|+.+|||+++|+|++++.+|+.. ++
T Consensus 2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~--- 78 (188)
T 1hru_A 2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLT--- 78 (188)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCC---
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCC---
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999862 33
Q ss_pred CCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCC
Q 021316 160 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 239 (314)
Q Consensus 160 ~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~ 239 (314)
+.+++++++|||||+|||+++++.+|+++ .++.++||||+|+||++++|++.+|.||++||||+||+
T Consensus 79 ----~~~~~~~~~~~pgP~tlil~~~~~~p~~v---------~~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~ 145 (188)
T 1hru_A 79 ----DVQRETIFSRWPGPVTFVFPAPATTPRWL---------TGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGL 145 (188)
T ss_dssp ----HHHHHHHHTTCSSSEEEEEECCTTSCHHH---------HTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTS
T ss_pred ----HHHHHHHHhCCCCCEEEEEECCCCCCHhH---------cCCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCC
Confidence 35678999999999999999999999985 35678999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCCCccEEEeCCCC-CCCCCeEEEEeCCccEEEE
Q 021316 240 NEWMVDPVVIADTYGPEGLDFVVDGGVR-VAEPSTVVDMTGTYPKIIR 286 (314)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~vDlIvDgg~~-~~~pSTIVdlt~~~~~ILR 286 (314)
+. ..+++++.+.|+. .+ +|+|+|.. .+.+|||||++++ +|||
T Consensus 146 p~-~~~~~~~~~~l~~-~v-~ildgg~~~~~~~STIvd~~~~--~ilR 188 (188)
T 1hru_A 146 PP-CRTVDEVRAQFGA-AF-PVVPGETGGRLNPSEIRDALTG--ELFR 188 (188)
T ss_dssp CC-CCSHHHHHHHHCT-TS-CBCCCCCCSSCCCCEEEETTTS--SBCC
T ss_pred CC-CCCHHHHHHHhCC-CE-EEEeCCCCCCCCCCeEEECcCC--EEEC
Confidence 85 5789999998985 67 89999974 5789999999864 6766
No 5
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=100.00 E-value=3.3e-41 Score=352.70 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=177.1
Q ss_pred CCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCC
Q 021316 81 DPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDG 160 (314)
Q Consensus 81 ~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~ 160 (314)
+.++ +.+.|++|+++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+||++|++++.+|+. ++
T Consensus 197 ~~~~-~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~~-v~---- 269 (761)
T 3vth_A 197 GEGC-FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCI-VS---- 269 (761)
T ss_dssp SSCC-CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHBC-CC----
T ss_pred CCCC-chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHcc-CC----
Confidence 4444 556899999999999999999999999999999999999999999999 9999999999999999986 54
Q ss_pred CCcHHHHHHHHhcCCCceEEEecCCC-CCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCC
Q 021316 161 QGHANIFRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 239 (314)
Q Consensus 161 ~~~~~~~~li~~~wPGPlTlIlpa~~-~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~ 239 (314)
+..++++++ ||||+| |+++++ .+|+.+ +++.+|||||||+||++++|++.+|.||++||||+||+
T Consensus 270 ---~~~~~ll~~-~pgPit-lL~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~ 335 (761)
T 3vth_A 270 ---PEEERLLLS-QRRPIV-LLKKKGEKLAKGI---------ADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEE 335 (761)
T ss_dssp ---HHHHHHHHS-TTCCEE-EEEBCSSCCCTTS---------STTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTS
T ss_pred ---HHHHHHHhC-CCCCEE-EEECCCCCCCHhH---------cCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCC
Confidence 357789987 999999 577766 788874 46788999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCCCccEEEeCCC--CCCCCCeEEEEeCCccEEEEeCCCCCcceeeecC
Q 021316 240 NEWMVDPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 300 (314)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~vDlIvDgg~--~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~~ 300 (314)
+. ..+.+++.+.++. .+|+|||+|. ..+.+|||||++++.++|||+|+|+.|.++.+..
T Consensus 336 p~-~~~~~e~~~~l~~-~vD~iLd~~r~i~~~~~STVvd~~~~~~~iLR~grG~~P~~~~l~~ 396 (761)
T 3vth_A 336 PI-CKDNEEALEKLKD-IADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPILLKK 396 (761)
T ss_dssp CC-CCSHHHHHHHTTT-TCSEEEEESSCCSSCCCCCEECEETTEECCSBCCTTTTTCCEECSS
T ss_pred CC-CCCHHHHHHHccC-cCCEEEECCCCccCCCCCeEEEEECCcEEEEecCCCCCCCccccCC
Confidence 75 6788888888884 8999999874 5789999999999999999999999999999864
No 6
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=100.00 E-value=2.9e-39 Score=332.97 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHH
Q 021316 87 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 166 (314)
Q Consensus 87 ~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~ 166 (314)
.+.+++|+++|++||||++||||+|||+||++|++||+|||++|+|+ +|||+|||+|+++ ++ +..
T Consensus 111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~~-------v~-------~~~ 175 (657)
T 3ttc_A 111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVADG-------LP-------DAA 175 (657)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCTT-------SC-------HHH
T ss_pred hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChHH-------CC-------HHH
Confidence 35799999999999999999999999999999999999999999999 8999999999882 22 246
Q ss_pred HHHHHhcCCCceEEEecCCC-CCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCCC
Q 021316 167 FRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVD 245 (314)
Q Consensus 167 ~~li~~~wPGPlTlIlpa~~-~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~ 245 (314)
+++++. ||||+|||+++++ .+|+.+ .++.+|||||||+||++++|++.+|.||++||||+||++. ..+
T Consensus 176 ~~ll~~-~pgPiTli~~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~-~~~ 244 (657)
T 3ttc_A 176 RQLLTT-PAAPIVLVDKKYVPELCDDI---------APGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPP-AIS 244 (657)
T ss_dssp HHHHTS-TTCCEEEEEGGGCTTSCTTS---------STTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSCC-CCS
T ss_pred HHHHhc-CCCCEEEEEeCCcCCCCHHH---------CCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCC-CCC
Confidence 788887 9999999999876 588874 4678999999999999999999999999999999999975 678
Q ss_pred HHHHHHHcCCCCccEEEeCCC--CCCCCCeEEEEeCCccEEEEeCCCCCcceeeecC
Q 021316 246 PVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 300 (314)
Q Consensus 246 ~~~i~~~~~~~~vDlIvDgg~--~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~~ 300 (314)
.+++.+.++. .+|+|||+|. ..+.+||||| + .++|||+|+|+.|.++.+..
T Consensus 245 ~~e~~~~l~~-~vD~iLd~gr~i~~~~dsSVV~--~-~~~ilRrgrG~~p~~~~l~~ 297 (657)
T 3ttc_A 245 NEQALEDLQG-IADGFLIHNRDIVQRMDDSVVR--E-SGEMLRRSRGYVPDALALPP 297 (657)
T ss_dssp HHHHHHHHTT-TCSEEEEESSCCCSCCCCCEEE--T-TCCEEECCTTTTTCCEECCT
T ss_pred HHHHHHHhcC-CCeEEEECCCcccCCCCCcEEE--C-CCeEEEcCCCCCCCccccCc
Confidence 8899998884 8999999985 4689999999 5 88999999999999999864
No 7
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=1.7e-40 Score=313.28 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=157.4
Q ss_pred hhHHHHHHHHH-cCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHH
Q 021316 88 WKLEPVVELLK-EGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 166 (314)
Q Consensus 88 ~~l~~av~~Lk-~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~ 166 (314)
+.+++|+++|+ +||||+|||||+|||+| +|++||+|||++|+|+.+|||++||+|++++++|+. ++ +.+
T Consensus 44 ~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~-v~-------~~~ 113 (295)
T 3l7v_A 44 NLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ-LT-------PEI 113 (295)
T ss_dssp SCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBC-CC-------HHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhc-CC-------HHH
Confidence 46889999999 99999999999999999 899999999999999999999999999999999986 54 357
Q ss_pred HHHHHhcCCCceE--EEecCCC----CCC------cchhccCccceecCCCCe----EEEEecChHHHHHHHHhCCCcee
Q 021316 167 FRAVKHCLPGPYT--FILTASK----EVP------KKCVRYGTTTAKYSLRKH----VGVRIPNDAICQAILQKMDAPLI 230 (314)
Q Consensus 167 ~~li~~~wPGPlT--lIlpa~~----~lP------~~l~~~g~~t~~~~~~~t----IgVRiP~~~i~~~Ll~~~G~PL~ 230 (314)
++++++|||||+| ||||+++ .+| ..+ .+++.+| ||||||+||++++|++.+|.||+
T Consensus 114 ~~Ll~~~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~--------v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~PLv 185 (295)
T 3l7v_A 114 DAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREEL--------MTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVY 185 (295)
T ss_dssp HHHHHHHHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHH--------HSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCE
T ss_pred HHHHHhcCCCCceeeEEEECCccccccCCcccccchhh--------ccCCCCCcceeeEEEeCCCHHHHHHHHHcCCCeE
Confidence 8999999999996 4999643 344 221 2467789 99999999999999999999999
Q ss_pred ecccccCCCCCCCCCHHHHHHHcCCCCccEEEeCCC-----------CCCCCCeEEEEe---CCccEEEEe--CCCCCcc
Q 021316 231 STSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-----------RVAEPSTVVDMT---GTYPKIIRQ--GKGPKLY 294 (314)
Q Consensus 231 sTSAN~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~-----------~~~~pSTIVdlt---~~~~~ILR~--G~~~~~~ 294 (314)
+||||+||++. ..+.+++.+.|+. .+|+|||+|. ....+..|+... ++....+|. .+|+.|.
T Consensus 186 aTSAN~SGep~-~~~~ee~~~~L~~-~vD~iLd~G~~~~~~~Psr~i~~r~ddsV~~~~~~~~g~~~~~rr~~~Rg~~P~ 263 (295)
T 3l7v_A 186 ASSANPSGKGN-RGKVEGIGERIES-MVDLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPQQGADSRSVEPC 263 (295)
T ss_dssp EEECC-----C-TTCGGGSCHHHHH-HSSEEEECHHHHHHTCTTCCTTTSCCSCCEEECBCTTSCBCCCCCTTCCSCSSC
T ss_pred ECCcccCCCCC-CCCHHHHHHHhcC-cCcEEEeCCCccCCCCCCcCcccCCCCeeEEEEEcCCCcEeeeeccCcccccCc
Confidence 99999999974 6788888887774 7999999863 122333444432 567778886 8899999
Q ss_pred eeeecCCC
Q 021316 295 WMEEEDAN 302 (314)
Q Consensus 295 ~~~~~~~~ 302 (314)
.+.+...-
T Consensus 264 p~~~~~~~ 271 (295)
T 3l7v_A 264 PVVIRKGL 271 (295)
T ss_dssp CEEEECCT
T ss_pred eeeccccc
Confidence 99886443
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=100.00 E-value=1.6e-32 Score=287.97 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCCcHHH
Q 021316 87 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 166 (314)
Q Consensus 87 ~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~~~~~ 166 (314)
...|++|+++|++|++|++||+|+|+|+||++|++||+||++.|+|| +|||+||++|++++++|+. +. +..
T Consensus 200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~-~~-------~~e 270 (772)
T 4g9i_A 200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAY-VS-------PEE 270 (772)
T ss_dssp THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSC-CC-------HHH
T ss_pred hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhc-cC-------chh
Confidence 45899999999999999999999999999999999999999999998 7999999999999999986 32 357
Q ss_pred HHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCc-eeecccccCCCCCCCCC
Q 021316 167 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAP-LISTSVKWLKDNEWMVD 245 (314)
Q Consensus 167 ~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~P-L~sTSAN~SG~~~~~~~ 245 (314)
.+++...|+.++++..+....+|+.+ .++.++||||+|++|++..|++.+|.| |++||||+||+|. .++
T Consensus 271 ~~~L~s~~~Pivll~~~~~~~l~~~v---------ap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P~-~~~ 340 (772)
T 4g9i_A 271 EEELTSYRRPIITLRKKEPFPLPENL---------APGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMPM-VKD 340 (772)
T ss_dssp HHHHSSTTCCEEEEECCSSCCSCTTS---------CSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSCC-BCS
T ss_pred hhhhccCCCCCEEEECCCCCCCChhH---------CCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCCC-ccC
Confidence 78888888878888888877888874 467889999999999999999999974 7999999999985 678
Q ss_pred HHHHHHHcCCCCccEEEeCCCC--CCCCCeEEEEeCCccEEEEeCCCCCcceeeecCCC
Q 021316 246 PVVIADTYGPEGLDFVVDGGVR--VAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDAN 302 (314)
Q Consensus 246 ~~~i~~~~~~~~vDlIvDgg~~--~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~~~~~~ 302 (314)
.+++.+.++. .+|++||+++. .....+||++.++.+.+||.++|+.|.++.+..+.
T Consensus 341 ~~~a~~~L~~-~~D~~L~h~R~I~~~~DDSvv~~~~~~~~~lRr~RG~~P~~~~~~~~~ 398 (772)
T 4g9i_A 341 NERAFEELKD-VADYFLLHNRKILNRADDSVIRFVDGKRAVIRRSRGFVPLPIEIPFEY 398 (772)
T ss_dssp HHHHHHHHTT-TCSBEEEESSCCCSCCCCCEECCCSSSCCBSCCCTTSTTCCEECSSCC
T ss_pred HHHHHHhhcC-cccEEEECCCCccCccCCceEEEECCeEEEEecCCCCCCCccccCCCC
Confidence 8888888874 89999999974 56789999999999999999999999999886544
No 9
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=97.23 E-value=0.0011 Score=67.50 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=104.2
Q ss_pred hHHHHHHHHHcCCEEE-EecCcEE--------EEEcccCChHHHHHHH-HHhcCCCCCCeEEEeCChHHHhhhhccCCCC
Q 021316 89 KLEPVVELLKEGAVGV-VPTDTLY--------AIVCDLKSHSAIERLR-RIKNVEPSKPLSILCRSLRDIDTYTTGFPRG 158 (314)
Q Consensus 89 ~l~~av~~Lk~GgVVi-~PTDTvY--------gL~cda~n~~AVerL~-~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~ 158 (314)
..++++++|.+|+||. +..-.=| .|.+||.+.+..+||. +||+|+.-.||+=.|- -|.+.+|.. .+
T Consensus 398 ~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~-~~-- 473 (576)
T 3ven_A 398 LEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLE-VD-- 473 (576)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBS-SC--
T ss_pred HHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcC-CC--
Confidence 5688999999999875 4444444 5999999999999999 8999999999986664 466777754 21
Q ss_pred CCCCcHHHHHHHHhcCCCce-EEEecC----CCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHH----hCCCc-
Q 021316 159 DGQGHANIFRAVKHCLPGPY-TFILTA----SKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQ----KMDAP- 228 (314)
Q Consensus 159 ~~~~~~~~~~li~~~wPGPl-TlIlpa----~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~----~~G~P- 228 (314)
.|-|+ +++.+. .+.+|.-.--.|+..+++ |.=-.+|...+||+ .+|.|
T Consensus 474 ---------------~~spyMl~~~~v~~~~r~~ipav~HvDgTaR~Qt-------V~~~~np~~~~ll~~f~~~TG~pv 531 (576)
T 3ven_A 474 ---------------ADFPYMIMTTKVRAAYAERLPSVVHEDWSTRPQT-------VTEASNPRYHRMLTELGDLVGDPV 531 (576)
T ss_dssp ---------------SCCCSSCSCEEBCGGGTTTCTTTSCTTSEECCEE-------ECTTTCHHHHHHHHHHHHHHSSCE
T ss_pred ---------------CCCCceeEeeecCHhHHhhCCcEEeccCCccceE-------ECCccCHHHHHHHHHHHHHhCCeE
Confidence 13343 333443 346776532233322222 33345777777776 45788
Q ss_pred eeecccccCCCCCCCCCHHHHHHHcCCCCccEEEeCC
Q 021316 229 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 265 (314)
Q Consensus 229 L~sTSAN~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg 265 (314)
|+-||-|..|+|. +.+|.++-+.|..-++|+++-++
T Consensus 532 llNTSfN~~GePi-V~tp~dA~~~f~~~~lD~Lv~~~ 567 (576)
T 3ven_A 532 CLNTSFNDRGEPI-VSSPADALLTFSRLPIDALAVGP 567 (576)
T ss_dssp EEEEESSCTTSCC-CCSHHHHHHHHHHTTCSEEEETT
T ss_pred EEECCCCCCCCCC-CCCHHHHHHHHHhCCCCEEEECC
Confidence 8899999999985 66888888887655789877655
No 10
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=28.13 E-value=23 Score=32.90 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=25.5
Q ss_pred cCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCC
Q 021316 202 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 239 (314)
Q Consensus 202 ~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~ 239 (314)
.+.++++||||+-..+ +-|.||+.||-++||.
T Consensus 116 NG~rGa~GikI~L~~I------~~g~pviitsG~LSGC 147 (295)
T 1hq0_A 116 NSARGANGIKIALEEV------QEGKPVIITSGNLSGC 147 (295)
T ss_dssp CBTEEEEEEEEEGGGC------BTTBCEEEECCCBSSC
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCcccCc
Confidence 4578899999994442 3478999999999975
No 11
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=23.82 E-value=2.2e+02 Score=20.84 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHcCCEEEEecC--c-EEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhc
Q 021316 95 ELLKEGAVGVVPTD--T-LYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 153 (314)
Q Consensus 95 ~~Lk~GgVVi~PTD--T-vYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~ 153 (314)
+++++-+++.+--+ + ++-..+||+|..|++.|..+-+ +++.+.+.+-+++.++..
T Consensus 20 ~~arr~~vlPl~~~~~~~l~va~~dP~~~~aldel~~~~g----~~v~~~va~~~~i~~~i~ 77 (96)
T 2bh1_X 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVK----HAFQLIELSQAEFESKLT 77 (96)
T ss_dssp HHHHHHTEEEEECSSSCCEEEEECSSCCHHHHHHHHHHHC----SCEEEEECCHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCcEEEEEEcCCCCHHHHHHHHHHhC----CCceEEEcCHHHHHHHHH
Confidence 45666777766543 4 5667899999999999987764 567778888888877654
No 12
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=20.27 E-value=81 Score=30.18 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHcCC--EEEEecCcEEE-------EEcccCChHHHHHHHHHhcCCCCCC
Q 021316 87 SWKLEPVVELLKEGA--VGVVPTDTLYA-------IVCDLKSHSAIERLRRIKNVEPSKP 137 (314)
Q Consensus 87 ~~~l~~av~~Lk~Gg--VVi~PTDTvYg-------L~cda~n~~AVerL~~iK~R~~~KP 137 (314)
.+.+.++++.|++|| ++|+|--|=.- +.-.+++..+++-++.+=.+. +.|
T Consensus 209 ~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ks-g~P 267 (367)
T 1iuq_A 209 TRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHS-DVP 267 (367)
T ss_dssp HHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTS-SSC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHc-CCC
Confidence 346889999999966 67788876665 445679999998888887765 344
Done!