Query 021316
Match_columns 314
No_of_seqs 154 out of 1315
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 15:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021316.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021316hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k7ja_ d.115.1.1 (A:) Hypothe 100.0 2.2E-55 1.6E-59 393.7 25.4 204 76-296 3-206 (206)
2 d1jcua_ d.115.1.1 (A:) Hypothe 100.0 1.5E-52 1.1E-56 375.7 17.1 201 75-297 1-202 (208)
3 d1hrua_ d.115.1.1 (A:) Hypothe 100.0 1.2E-48 8.9E-53 343.3 15.9 186 83-286 1-186 (186)
4 d1c4oa1 c.37.1.19 (A:2-409) Nu 54.7 16 0.0011 32.9 7.9 81 82-186 9-89 (408)
5 d2f06a1 d.58.18.11 (A:71-141) 31.1 4.9 0.00036 27.5 0.1 34 72-112 37-70 (71)
6 d1hq0a_ d.194.1.1 (A:) Type 1 29.6 9.8 0.00071 33.2 1.8 33 201-239 115-147 (295)
7 d1t5la1 c.37.1.19 (A:2-414) Nu 28.8 74 0.0054 28.3 8.0 82 80-185 10-91 (413)
8 d1d9qa_ e.7.1.1 (A:) Fructose- 23.9 17 0.0012 32.1 2.4 60 89-153 256-337 (340)
9 d2d69a1 c.1.14.1 (A:134-424) R 21.8 33 0.0024 29.4 3.8 44 218-266 10-57 (291)
10 d1wdda1 c.1.14.1 (A:151-475) R 20.8 36 0.0026 29.7 4.0 44 218-266 8-55 (325)
11 d1bwva1 c.1.14.1 (A:150-478) R 20.8 29 0.0021 30.4 3.2 44 218-266 9-56 (328)
12 d1geha1 c.1.14.1 (A:137-443) R 20.8 37 0.0027 29.3 4.0 44 218-266 10-57 (307)
13 d1wv2a_ c.1.31.1 (A:) Thiazole 20.3 65 0.0048 26.9 5.4 60 207-266 129-188 (243)
No 1
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.2e-55 Score=393.70 Aligned_cols=204 Identities=32% Similarity=0.611 Sum_probs=187.8
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccC
Q 021316 76 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 155 (314)
Q Consensus 76 ~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~ 155 (314)
.|+++||+|||.+.+++|++.|++||||++||||+|||+||++|++|++|||++|+|+.+|||+++++|++++.+|+. +
T Consensus 3 ~~~~~~~~~p~~~~i~~a~~~L~~G~vv~~PTdTvYgl~~da~~~~av~~i~~iK~R~~~kpl~vlv~~~~~~~~~~~-~ 81 (206)
T d1k7ja_ 3 QFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-V 81 (206)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC-C
T ss_pred ceEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhccccccccccccCCHHHHHHHhh-h
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred CCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccc
Q 021316 156 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 235 (314)
Q Consensus 156 p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN 235 (314)
+ ..+++++++|||||+|+|+++++.++..+. ..+.++||||||+|+++++|++.+|.||++||||
T Consensus 82 ~-------~~~~~l~~~~wPgplT~i~~~~~~~~~~~~--------~~~~~tv~iRip~~~~~~~Ll~~~~~Pl~sTSAN 146 (206)
T d1k7ja_ 82 D-------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLM 146 (206)
T ss_dssp C-------HHHHHHHHTSCSSSEEEEEEBCTTSCGGGS--------CTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECB
T ss_pred h-------hhhhhhhccccccceeeeecCCccccchhh--------ccccceeeeeecccchhHHHHHhhcCceeeeccc
Confidence 3 367899999999999999999988876542 3567899999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHcCCCCccEEEeCCCCCCCCCeEEEEeCCccEEEEeCCCCCccee
Q 021316 236 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 296 (314)
Q Consensus 236 ~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~ 296 (314)
+||++.+..+.+++.+.|+. .+|+|+|+|...+.+|||||+++++++|||+|+|+.++||
T Consensus 147 ~sG~~~~~~~~~~i~~~~~~-~vd~iid~g~~~~~pSTIid~~~~~~~ilR~Ga~~~~~~l 206 (206)
T d1k7ja_ 147 LPGSEFTESDPEEIKDRLEK-QVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206 (206)
T ss_dssp CTTCSSBCCCHHHHHHHHTT-TCSEEEECCCCCSCCCEEEECGGGCCEEEECCSSCSGGGC
T ss_pred ccccccccCCHHHHHHHhCC-CceEEEeCCCcCCCCCeEEEEECCCeEEEecCCCCchhhC
Confidence 99987556678889998984 7999999998778999999999999999999999998875
No 2
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=100.00 E-value=1.5e-52 Score=375.68 Aligned_cols=201 Identities=28% Similarity=0.496 Sum_probs=183.2
Q ss_pred eEEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhcc
Q 021316 75 LMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 154 (314)
Q Consensus 75 ~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~ 154 (314)
|+.++|+++|++.+.+++|+++|++||||+|||||+|||+|+++|++|++|||++|+|+.+|||+++++|++++.+|+.
T Consensus 1 m~i~~i~~~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~~~~~- 79 (208)
T d1jcua_ 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSR- 79 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEE-
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHcCCEEEEEcCceeeeEEeCCCcHHHHHHHHhhccccccchheecchhhhhhhhhh-
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCcHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeeccc
Q 021316 155 FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 234 (314)
Q Consensus 155 ~p~~~~~~~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSA 234 (314)
++ +..++++++|||||+|+|+++++.+|+++. .+.++||||||+|+++++|++.+ ||++|||
T Consensus 80 ~~-------~~~~~l~~~~~pgp~Tii~~~~~~~~~~~~---------~~~~~vgiRip~~~~~~~L~~~~--Pl~~TSA 141 (208)
T d1jcua_ 80 PS-------GDAMELMERILPGPYTVVLERNELIPDVIT---------GGSSRVGIRVPDDEICRRIAARF--PVTATSA 141 (208)
T ss_dssp CC-------HHHHHHHHHSCSSSEEEEEEECSCCCHHHH---------TTTTEEEEECCSCHHHHHHHHHS--CEEEEEC
T ss_pred hh-------HHHHHhhhcccccccceehhhhhhhhhhhc---------CCccceeeeccchHHHHHHhcCC--Ccccccc
Confidence 43 357899999999999999999999999863 46789999999999999999863 9999999
Q ss_pred ccCCCCCCCCCHHHHHHHcCCCCccEEEeCCC-CCCCCCeEEEEeCCccEEEEeCCCCCcceee
Q 021316 235 KWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWME 297 (314)
Q Consensus 235 N~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~-~~~~pSTIVdlt~~~~~ILR~G~~~~~~~~~ 297 (314)
|+||++. ..+.+++.+.|. .+|+|+|+|. ..+.+|||||+++++++|||+|+|+.+++|-
T Consensus 142 N~sG~~~-~~~~~ei~~~~~--~vd~iid~g~~~~~~~STIid~~~~~~~IlR~G~i~~~~i~~ 202 (208)
T d1jcua_ 142 NISGKPP-SPRLEEIVRDLD--AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVLL 202 (208)
T ss_dssp CSSSCCS-CSCHHHHHHHSS--SSEECCSSCCCSCSCCCEEECCCSSSCCEEECCCSSCCCCCS
T ss_pred ccccccc-chhhHHHHHHhc--CccEEEECCcCCCCCCCEEEEeeCCceEEEEeCCCCHHHHHh
Confidence 9999975 678888888774 6999999997 5789999999999999999999999877763
No 3
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.2e-48 Score=343.25 Aligned_cols=186 Identities=20% Similarity=0.292 Sum_probs=166.8
Q ss_pred CCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCCC
Q 021316 83 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQG 162 (314)
Q Consensus 83 ~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~~ 162 (314)
+|.+.+.|++|+++|++||||++||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++..|+...+.
T Consensus 1 ~n~~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~~~~~~----- 75 (186)
T d1hrua_ 1 NNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTML----- 75 (186)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTC-----
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhhhccccccceeeehhhhhhhhcccchh-----
Confidence 356778999999999999999999999999999999999999999999999999999999999999999863332
Q ss_pred cHHHHHHHHhcCCCceEEEecCCCCCCcchhccCccceecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCCCCC
Q 021316 163 HANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEW 242 (314)
Q Consensus 163 ~~~~~~li~~~wPGPlTlIlpa~~~lP~~l~~~g~~t~~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~ 242 (314)
....+++++++||||+|+|+++++.+|+++ ..+.++||||+|+|+++++|++.+|.||++||||+||++.
T Consensus 76 ~~~~~~~~~~~~Pgplt~i~~~~~~~~~~~---------~~~~~tigvRiP~~~~~~~L~~~~g~Pl~~TSAN~sG~~~- 145 (186)
T d1hrua_ 76 TDVQRETIFSRWPGPVTFVFPAPATTPRWL---------TGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPP- 145 (186)
T ss_dssp CHHHHHHHHTTCSSSEEEEEECCTTSCHHH---------HTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCC-
T ss_pred HHHHHHHHHhcCCCcceeccccccCCcchh---------hhccceeeeeechhHHHHHHHHHhCCcEEecccccCCCCC-
Confidence 245678999999999999999999999875 3567899999999999999999999999999999999974
Q ss_pred CCCHHHHHHHcCCCCccEEEeCCCCCCCCCeEEEEeCCccEEEE
Q 021316 243 MVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR 286 (314)
Q Consensus 243 ~~~~~~i~~~~~~~~vDlIvDgg~~~~~pSTIVdlt~~~~~ILR 286 (314)
..+.+++.+.|+. .+|+|+|++...+.||||||++++ +|||
T Consensus 146 ~~~~~~i~~~~~~-~vd~i~~~~~~~~~~STIid~~~~--~iiR 186 (186)
T d1hrua_ 146 CRTVDEVRAQFGA-AFPVVPGETGGRLNPSEIRDALTG--ELFR 186 (186)
T ss_dssp CCSHHHHHHHHCT-TSCBCCCCCCSSCCCCEEEETTTS--SBCC
T ss_pred CCcHHHHHHHhCC-CcEEEECCCCCCCCCcEEEECcCC--EEeC
Confidence 6789999999985 789888887778889999999866 4676
No 4
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=54.74 E-value=16 Score=32.94 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCCCC
Q 021316 82 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQ 161 (314)
Q Consensus 82 ~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~~~ 161 (314)
|.+.++++|+++++.|++|.=.+ +++|+..++ ..-.+..|++-. ++|+.|++.|.+++.++..
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~----~L~GlsgS~-ka~~~A~l~~~~----~rp~LvVt~~~~~A~~l~~-------- 71 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFV----TLLGATGTG-KTVTMAKVIEAL----GRPALVLAPNKILAAQLAA-------- 71 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEE----EEEECTTSC-HHHHHHHHHHHH----TCCEEEEESSHHHHHHHHH--------
T ss_pred CCCCCHHHHHHHHHHHhcCCCcE----EEecCCCCH-HHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHH--------
Confidence 77788889999999999986322 566776654 223456676644 4589999999999888764
Q ss_pred CcHHHHHHHHhcCCCceEEEecCCC
Q 021316 162 GHANIFRAVKHCLPGPYTFILTASK 186 (314)
Q Consensus 162 ~~~~~~~li~~~wPGPlTlIlpa~~ 186 (314)
-++.+++....+.++...
T Consensus 72 -------dL~~~l~~~~v~~fp~~~ 89 (408)
T d1c4oa1 72 -------EFRELFPENAVEYFISYY 89 (408)
T ss_dssp -------HHHHHCTTSEEEECCCGG
T ss_pred -------HHHHhcCccceeeCCchh
Confidence 223466766666666543
No 5
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=31.11 E-value=4.9 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCCCChhhHHHHHHHHHcCCEEEEecCcEEE
Q 021316 72 EGGLMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYA 112 (314)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYg 112 (314)
+..++.+.++ ..++|.++|++.|+-++..|.+|.
T Consensus 37 ~~~~~vl~vd-------d~~~a~~~L~~~G~~vl~~~dl~~ 70 (71)
T d2f06a1 37 NVANVVIRPS-------NMDKCIEVLKEKKVDLLAASDLYK 70 (71)
T ss_dssp TEEEEEEEES-------CHHHHHHHHHHTTCEEECHHHHTT
T ss_pred CcEEEEEEEC-------CHHHHHHHHHHCCCEEEchHheec
Confidence 3367777775 346899999999999998887774
No 6
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=29.61 E-value=9.8 Score=33.24 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=26.0
Q ss_pred ecCCCCeEEEEecChHHHHHHHHhCCCceeecccccCCC
Q 021316 201 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 239 (314)
Q Consensus 201 ~~~~~~tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~ 239 (314)
..+.++++|+||+-..+ +-|.||+.||-++||.
T Consensus 115 ~NG~rGt~GikI~L~~I------~~g~pvlitsG~LSGC 147 (295)
T d1hq0a_ 115 SNSARGANGIKIALEEV------QEGKPVIITSGNLSGC 147 (295)
T ss_dssp CCBTEEEEEEEEEGGGC------BTTBCEEEECCCBSSC
T ss_pred cCCCCcceeEEEEHHHc------CCCCeEEEeCCcccCc
Confidence 35678899999994443 3488999999999975
No 7
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=28.83 E-value=74 Score=28.32 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=56.5
Q ss_pred eCCCCCChhhHHHHHHHHHcCCEEEEecCcEEEEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChHHHhhhhccCCCCC
Q 021316 80 ADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGD 159 (314)
Q Consensus 80 v~~~~~~~~~l~~av~~Lk~GgVVi~PTDTvYgL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~~l~~~~~~~p~~~ 159 (314)
..|+|-|+++|+++++-|++|.-- -++.|+.+++ ..-.+..|++- .++|+.|++.|..++.++..
T Consensus 10 ~~p~gDQP~aI~~l~~~l~~g~~~----q~l~GltGS~-ka~~iA~l~~~----~~rp~LVVt~n~~~A~qL~~------ 74 (413)
T d1t5la1 10 YEPQGDQPQAIAKLVDGLRRGVKH----QTLLGATGTG-KTFTISNVIAQ----VNKPTLVIAHNKTLAGQLYS------ 74 (413)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTCSE----EEEEECTTSC-HHHHHHHHHHH----HTCCEEEECSSHHHHHHHHH------
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCc----EEEeCCCCcH-HHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHH------
Confidence 348999999999999999998421 1356777754 23345566553 26899999999999888754
Q ss_pred CCCcHHHHHHHHhcCCCceEEEecCC
Q 021316 160 GQGHANIFRAVKHCLPGPYTFILTAS 185 (314)
Q Consensus 160 ~~~~~~~~~li~~~wPGPlTlIlpa~ 185 (314)
-++.|+|..-.+.++..
T Consensus 75 ---------dL~~~l~~~~v~~f~~~ 91 (413)
T d1t5la1 75 ---------ELKEFFPHNAVEYFVSY 91 (413)
T ss_dssp ---------HHHHHCTTSEEEEECCG
T ss_pred ---------HHHHHcCCCceeeccch
Confidence 23446776666665543
No 8
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=23.91 E-value=17 Score=32.12 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred hHHHHHHHHHcCCEEEEecCcEE----------------------EEEcccCChHHHHHHHHHhcCCCCCCeEEEeCChH
Q 021316 89 KLEPVVELLKEGAVGVVPTDTLY----------------------AIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 146 (314)
Q Consensus 89 ~l~~av~~Lk~GgVVi~PTDTvY----------------------gL~cda~n~~AVerL~~iK~R~~~KPl~llv~sl~ 146 (314)
.+..+-+.|..|||+.||.|..+ |.++|- -+||..++-+.-++--.++++|-+
T Consensus 256 mVaD~hr~L~~GGif~yP~~~~~~~gkLRllyEa~P~afivE~AGG~asdG-----~~~iLdi~p~~~hqr~p~~~GS~~ 330 (340)
T d1d9qa_ 256 LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDG-----HQRVLDIQPTEIHQRVPLYIGSTE 330 (340)
T ss_dssp HHHHHHHHHHHCCEEEECCBTTBTTCSSBTTTTHHHHHHHHHHTTCEEESS-----SSBGGGCCCSSTTCBCCEEEECHH
T ss_pred cchhHHHHHHhCCeEEecCCCCCCCccEeeecchhHHHHHHHhcCCcccCC-----CcccccCCCCccccCCCeEEeCHH
Confidence 45667788899999999999765 444432 248999998889999999999999
Q ss_pred HHhhhhc
Q 021316 147 DIDTYTT 153 (314)
Q Consensus 147 ~l~~~~~ 153 (314)
+++++-.
T Consensus 331 eV~~~~~ 337 (340)
T d1d9qa_ 331 EVEKVEK 337 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 9
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.85 E-value=33 Score=29.42 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=32.5
Q ss_pred HHHHHHhCCCceeecccccC-CCCCCCCCHHHHHHHcC---CCCccEEEeCCC
Q 021316 218 CQAILQKMDAPLISTSVKWL-KDNEWMVDPVVIADTYG---PEGLDFVVDGGV 266 (314)
Q Consensus 218 ~~~Ll~~~G~PL~sTSAN~S-G~~~~~~~~~~i~~~~~---~~~vDlIvDgg~ 266 (314)
+|+++...++||++|-.... |- ++++..+... ..++|||=|...
T Consensus 10 ~R~~~gv~~RPL~~tiiKP~~Gl-----s~~~~a~~~~~~~~GGvD~IKDDe~ 57 (291)
T d2d69a1 10 IREFMGVKDRPLTATVPKPKMGW-----SVEEYAEIAYELWSGGIDLLKDDEN 57 (291)
T ss_dssp HHHHHTCCSSCEEEECCSSSSCC-----CHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred HHHHhCCCCCceEEeeeCCcCCC-----CHHHHHHHHHHHHccCCceecCCcc
Confidence 58899999999999999875 55 3666544321 258999988764
No 10
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=20.84 E-value=36 Score=29.67 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=32.8
Q ss_pred HHHHHHhCCCceeecccccC-CCCCCCCCHHHHHHHcC---CCCccEEEeCCC
Q 021316 218 CQAILQKMDAPLISTSVKWL-KDNEWMVDPVVIADTYG---PEGLDFVVDGGV 266 (314)
Q Consensus 218 ~~~Ll~~~G~PL~sTSAN~S-G~~~~~~~~~~i~~~~~---~~~vDlIvDgg~ 266 (314)
.|+++...++||++|-.... |- ++++..+... ..++|+|=|...
T Consensus 8 ~R~~lgv~~RPLlgtiiKP~~Gl-----sp~~~a~~~~~~~~GGvD~IKDDE~ 55 (325)
T d1wdda1 8 ERDKLNKYGRPLLGCTIKPKLGL-----SAKNYGRACYECLRGGLDFTKDDEN 55 (325)
T ss_dssp HHHHHTCCSSCEEECBCSSSSCC-----CHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred hHHhhCCCCCCeEEeecCCCCCC-----CHHHHHHHHHHHHccCCceeeCCcc
Confidence 58899999999999999874 55 3666554321 258999988764
No 11
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=20.78 E-value=29 Score=30.37 Aligned_cols=44 Identities=25% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHhCCCceeecccccC-CCCCCCCCHHHHHHHcC---CCCccEEEeCCC
Q 021316 218 CQAILQKMDAPLISTSVKWL-KDNEWMVDPVVIADTYG---PEGLDFVVDGGV 266 (314)
Q Consensus 218 ~~~Ll~~~G~PL~sTSAN~S-G~~~~~~~~~~i~~~~~---~~~vDlIvDgg~ 266 (314)
.|+++...++||++|-.... |- ++++..+... ..++|+|=|...
T Consensus 9 ~R~~lgv~~RPL~~tiiKP~~Gl-----sp~~~a~~~~e~a~GGvD~IKDDE~ 56 (328)
T d1bwva1 9 ERERLDKFGRPLLGCTTKPKLGL-----SGKNYGRVVYEALKGGLDFVKDDEN 56 (328)
T ss_dssp HHHHHTCCSSCEEECBCSSSSCC-----CHHHHHHHHHHHHHHTCSEEECCTT
T ss_pred hHHHhCCCCCCeEEeeeCCCCCC-----CHHHHHHHHHHHHhcCCCeeeCCcc
Confidence 58999999999999999875 55 3666554322 148999988764
No 12
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.78 E-value=37 Score=29.26 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred HHHHHHhCCCceeecccccC-CCCCCCCCHHHHHHHcC---CCCccEEEeCCC
Q 021316 218 CQAILQKMDAPLISTSVKWL-KDNEWMVDPVVIADTYG---PEGLDFVVDGGV 266 (314)
Q Consensus 218 ~~~Ll~~~G~PL~sTSAN~S-G~~~~~~~~~~i~~~~~---~~~vDlIvDgg~ 266 (314)
+|+++...++||++|-...+ |- ++++..+... ..++|+|=|...
T Consensus 10 ~R~~~gv~~RPL~~tiiKP~~Gl-----s~~~~a~~~~~~~~GGvD~IKDDe~ 57 (307)
T d1geha1 10 VRKMLEIKDRPIYGVVPKPKVGY-----SPEEFEKLAYDLLSNGADYMKDDEN 57 (307)
T ss_dssp HHHHHTCCSSCEEEECCSSCSSC-----CHHHHHHHHHHHHHTTCCEEECCTT
T ss_pred HHHHhCCCCCceEEeeeCCcCCC-----CHHHHHHHHHHHHhcCCCeeeCCcc
Confidence 58899999999999999875 55 3566554321 258999988764
No 13
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.27 E-value=65 Score=26.90 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=40.9
Q ss_pred eEEEEecChHHHHHHHHhCCCceeecccccCCCCCCCCCHHHHHHHcCCCCccEEEeCCC
Q 021316 207 HVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV 266 (314)
Q Consensus 207 tIgVRiP~~~i~~~Ll~~~G~PL~sTSAN~SG~~~~~~~~~~i~~~~~~~~vDlIvDgg~ 266 (314)
+|-.=+.+++++-+=++..|...+++-+-.=|....+.++..+..+.....+.+|+|+|.
T Consensus 129 ~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGI 188 (243)
T d1wv2a_ 129 DVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGV 188 (243)
T ss_dssp EEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCC
T ss_pred EEEeccCCCHHHHhHHHHcCceeeeecccccccccccccHHHHHhccccCCcceEeeccc
Confidence 355556778888777788999988887765333223567776655443336788999996
Done!