RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021316
         (314 letters)



>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score =  113 bits (282), Expect = 9e-31
 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 17/220 (7%)

Query: 77  YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 136
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +    
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63

Query: 137 PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 196
             +++CR L ++ TY+              FR +K+  PG YTFIL  +KEVP++ ++  
Sbjct: 64  NFTLMCRDLSELSTYS--------FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEK 115

Query: 197 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPE 256
             T        +G+R+P++ I QA+L+ +  P++STS+          DP  I D    +
Sbjct: 116 RKT--------IGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ 167

Query: 257 GLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 296
            +D ++ GG    +P+TV+D+T   P ++R+G G    ++
Sbjct: 168 -VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206


>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score = 88.5 bits (218), Expect = 2e-21
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 23/218 (10%)

Query: 75  LMYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEP 134
           ++  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60

Query: 135 SKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVR 194
            KP+SI    + +I  ++        +   +    ++  LPGPYT +L  ++ +P     
Sbjct: 61  HKPVSICVSCVDEIPRFS--------RPSGDAMELMERILPGPYTVVLERNELIPDVI-- 110

Query: 195 YGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG 254
               T        VG+R+P+D IC+ I  +   P+ +TS              ++ D   
Sbjct: 111 ----TGG---SSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLD- 160

Query: 255 PEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGP 291
              +D V+D G     EPSTV+D+T   P+++R+GKGP
Sbjct: 161 --AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGP 196


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 80.8 bits (198), Expect = 6e-19
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 18/197 (9%)

Query: 90  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 149
           +   +++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  +   + 
Sbjct: 8   IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 67

Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 209
            Y       D Q        +    PGP TF+  A    P+                 + 
Sbjct: 68  PYIDDTMLTDVQ-----RETIFSRWPGPVTFVFPAPATTPRWLTGR---------FDSLA 113

Query: 210 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA 269
           VR+ +  +  A+ Q    PL+STS   L           +   +G      V        
Sbjct: 114 VRVTDHPLVVALCQAYGKPLVSTSA-NLSGLPPCRTVDEVRAQFGAA-FPVVPGETGGRL 171

Query: 270 EPSTVVDMTGTYPKIIR 286
            PS + D      ++ R
Sbjct: 172 NPSEIRDALT--GELFR 186


>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
           {Sphingomonas sp. [TaxId: 28214]}
          Length = 492

 Score = 29.9 bits (66), Expect = 0.37
 Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 234 VKWLKDNEWMVDPVVIAD-TYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPK 292
           +K+    ++           +G  G+ + +  G  V + S +        ++   G    
Sbjct: 330 IKFF---DFYFSRPGRDISNFGVPGVTYDIKNGKAVFKDSVLKSPQPVNNQLYDMGAQIP 386

Query: 293 LYWMEEED 300
           + + ++ D
Sbjct: 387 IGFWQDYD 394


>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
           protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 25.5 bits (56), Expect = 1.9
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 226 DAPLISTSVKWLKDN-EWMVDP 246
           DAP  +    WL+ + E+ VDP
Sbjct: 24  DAPRRAELEMWLQGHPEFAVDP 45


>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 126

 Score = 26.2 bits (57), Expect = 2.8
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 20  HSLEAATRRAAPFPGRVSSLSPKPKPSRFRIVAMTVKRSPKRLK 63
            S  AA R     P  +  L      S +R   +  K  P+ L 
Sbjct: 80  SSAVAAVRNVGRIP-EMQQLPRATFDSLYRQRRIIFK--PEDLS 120


>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
           [TaxId: 10754]}
          Length = 554

 Score = 26.5 bits (58), Expect = 4.7
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 236 WLKDNEWMVDPVVIADT--------YGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQ 287
           W  DN+W+ D   +  T        Y P   D+V   G+    P        T    IR+
Sbjct: 95  WTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRE 154

Query: 288 GKG 290
             G
Sbjct: 155 CIG 157


>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 25.4 bits (56), Expect = 4.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 119 SHSAIERLRRIKNVEPSK 136
             SA  RL  +  V+P K
Sbjct: 41  DQSARARLSNLALVKPEK 58


>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
           PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
          Length = 405

 Score = 26.4 bits (57), Expect = 5.3
 Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 2/24 (8%)

Query: 235 KWLK--DNEWMVDPVVIADTYGPE 256
             L   D    + PV++ +    +
Sbjct: 374 AKLLDRDLNLNLPPVILQENSKDQ 397


>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus
           subtilis [TaxId: 1423]}
          Length = 333

 Score = 26.2 bits (56), Expect = 6.4
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 150 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTA------------SKEVPKKCVRYGT 197
           T+  G     G         ++  L    T I TA             K + +   R   
Sbjct: 20  TWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYMKRDQV 79

Query: 198 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 257
             A  +       ++   A    I+++++  L      ++   +      ++      E 
Sbjct: 80  ILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEV 139

Query: 258 LDFVVDGG-VRVAEPST 273
           +  + D G +R    S 
Sbjct: 140 MKELYDAGKIRAIGVSN 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,044
Number of extensions: 58003
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 13
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)