BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021317
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 95 LVQILHSGSVQGRVDAVTAL-HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
+ Q L+S +Q ++ A LS E ++DA A+P L+ LL + E
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
AL I S E A+ ++ G + LV+ + + Q A+ AL ++ S ++ Q
Sbjct: 76 WALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA 133
Query: 214 ILKEGAIPGLLRL 226
++ GA+P L++L
Sbjct: 134 VIDAGALPALVQL 146
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 36 LSKTRNKVK-IATAGAIPPLVELLKFQN-GTLREXXXXXXXXXXXXXXXXXXXXXXXXXX 93
LS +++ + AGA+P LV+LL N L+E
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 94 LLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEK 152
LVQ+L S + Q +A+ AL + S E ++DA A+P L+ LL + E
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEA 158
Query: 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVE 185
AL I S E + A+ + G L +E ++
Sbjct: 159 LWALSNIASGGNEQKQAVK--EAGALEKLEQLQ 189
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 95 LVQILHSGSVQGRVDAVTAL-HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
+ Q L+S +Q ++ A LS E ++DA A+P L+ LL + E
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
AL I S E A+ ++ G + LV+ + + Q A+ AL ++ S ++ Q
Sbjct: 76 WALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA 133
Query: 214 ILKEGAIPGLLRL 226
++ GA+P L++L
Sbjct: 134 VIDAGALPALVQL 146
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 6/194 (3%)
Query: 36 LSKTRNKVK-IATAGAIPPLVELLKFQN-GTLREXXXXXXXXXXXXXXXXXXXXXXXXXX 93
LS +++ + AGA+P LV+LL N L+E
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 94 LLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEK 152
LVQ+L S + Q +A+ AL + S E ++DA A+P L+ LL + E
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEA 158
Query: 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 212
AL I S E A+ ++ G + LV+ + + Q A+ AL ++ S ++ +Q
Sbjct: 159 LWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQ 216
Query: 213 LILKEGAIPGLLRL 226
+ + GA+ L +L
Sbjct: 217 AVKEAGALEKLEQL 230
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 95 LVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
+VQ L+S Q A+ L + S E ++DA A+P L+ LL + E
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
AL I S E A+ ++ G + LV+ + + Q A+ AL ++ S ++ Q
Sbjct: 76 WALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA 133
Query: 214 ILKEGAIPGLLRL 226
++ GA+P L++L
Sbjct: 134 VIDAGALPALVQL 146
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 95 LVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
+VQ L+S Q A+ L + S E ++DA A+P L+ LL + E
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
AL I S E A+ ++ G + LV+ + + Q A+ AL ++ S ++ Q
Sbjct: 76 WALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA 133
Query: 214 ILKEGAIPGLLRL 226
++ GA+P L++L
Sbjct: 134 VIDAGALPALVQL 146
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 45 IATAGAIPPLVELLKFQN-GTLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGS 103
+ AGA+P LV+LL N L+E LVQ+L S +
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Query: 104 VQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162
Q +A+ AL + S E ++DA A+P L+ LL + E AL I S
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASG 168
Query: 163 SEEGRIAITNSDGGILTLVETVE 185
E + A+ + G L +E ++
Sbjct: 169 GNEQKQAVK--EAGALEKLEQLQ 189
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 139 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 189
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEXLKYSKHCEGAEDLQEALSSILGILKAVNDSXHLIAITGYDGNLGDLGKLLXQGSF 216
Query: 190 -VSTQHAVG 197
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1BBH|A Chain A, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
pdb|1BBH|B Chain B, Atomic Structure Of A Cytochrome C' With An Unusual
Ligand- Controlled Dimer Dissociation At 1.8 Angstroms
Resolution
Length = 131
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR 211
G TL E G + + A G + + C+SC +KYR
Sbjct: 93 GAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYR 129
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 139 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 189
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 190 -VSTQHAVG 197
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 139 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 189
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 190 -VSTQHAVG 197
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 139 LLKDCKKYSKFAEKATALLEILSS---------SEEGRIAITNSDGGILTLVETVEDGSL 189
LLK+ KYSK E A L E LSS IAIT DG + L + + GS
Sbjct: 157 LLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSF 216
Query: 190 -VSTQHAVG 197
V T H G
Sbjct: 217 SVWTDHKKG 225
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 12/171 (7%)
Query: 95 LVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKA 153
LV++LH + D A+ YL+ E ++ VP L+ LL +
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLG-ASELPIVTPAL 246
Query: 154 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL 213
A+ I++ ++E + D G L + ++ + Q +S + R Q
Sbjct: 247 RAIGNIVTGTDEQTQVVI--DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 214 ILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEKRLSSSVLEKIVY 264
++ G +P L+ + + F+ Q+ A S +E+IVY
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVT--------NYTSGGTVEQIVY 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,696,233
Number of Sequences: 62578
Number of extensions: 213937
Number of successful extensions: 649
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 15
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)