Query 021317
Match_columns 314
No_of_seqs 184 out of 1896
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4224 Armadillo repeat prote 100.0 1.6E-30 3.4E-35 225.1 16.5 279 15-301 92-374 (550)
2 PLN03200 cellulose synthase-in 100.0 3.7E-28 7.9E-33 251.7 27.1 276 14-290 19-313 (2102)
3 PLN03200 cellulose synthase-in 100.0 3.6E-28 7.9E-33 251.8 26.5 275 11-291 407-725 (2102)
4 KOG4224 Armadillo repeat prote 100.0 4E-28 8.7E-33 210.3 18.3 268 16-290 175-447 (550)
5 KOG0166 Karyopherin (importin) 100.0 1.5E-26 3.2E-31 212.4 21.5 280 14-299 115-403 (514)
6 KOG0166 Karyopherin (importin) 99.9 3.7E-25 8.1E-30 203.1 21.7 271 14-290 158-437 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 4.2E-24 9.2E-29 184.0 16.6 281 17-305 80-370 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 3.4E-24 7.4E-29 184.6 11.9 266 18-289 125-443 (526)
9 PF05804 KAP: Kinesin-associat 99.9 1.1E-21 2.4E-26 189.2 24.8 267 22-303 263-532 (708)
10 PF05804 KAP: Kinesin-associat 99.8 1.9E-18 4.1E-23 167.0 24.9 272 13-290 295-608 (708)
11 KOG2122 Beta-catenin-binding p 99.8 1.2E-18 2.6E-23 171.9 14.3 228 22-251 365-605 (2195)
12 KOG1048 Neural adherens juncti 99.8 6.8E-17 1.5E-21 153.3 21.4 282 14-296 239-648 (717)
13 KOG4199 Uncharacterized conser 99.8 9.7E-16 2.1E-20 132.4 26.1 284 17-309 116-430 (461)
14 KOG4199 Uncharacterized conser 99.8 2.1E-16 4.6E-21 136.5 21.6 268 16-288 155-443 (461)
15 KOG2122 Beta-catenin-binding p 99.7 2.5E-17 5.4E-22 162.8 15.0 264 23-290 312-602 (2195)
16 PF04826 Arm_2: Armadillo-like 99.7 5.1E-16 1.1E-20 134.0 19.4 198 46-250 9-208 (254)
17 PF04826 Arm_2: Armadillo-like 99.7 4.8E-15 1E-19 128.0 20.5 185 15-206 19-207 (254)
18 KOG1048 Neural adherens juncti 99.6 1.7E-14 3.7E-19 137.2 13.0 193 51-247 235-452 (717)
19 PF10508 Proteasom_PSMB: Prote 99.5 9.6E-12 2.1E-16 118.6 23.0 272 13-289 82-366 (503)
20 cd00020 ARM Armadillo/beta-cat 99.5 1.6E-12 3.4E-17 99.7 13.9 118 126-247 2-120 (120)
21 cd00020 ARM Armadillo/beta-cat 99.5 8.1E-13 1.8E-17 101.3 12.1 117 85-204 2-120 (120)
22 PF10508 Proteasom_PSMB: Prote 99.4 5.3E-11 1.1E-15 113.6 22.3 264 16-289 46-319 (503)
23 KOG4500 Rho/Rac GTPase guanine 99.4 2.3E-11 5.1E-16 108.7 17.1 288 14-304 93-490 (604)
24 KOG1222 Kinesin associated pro 99.4 6.2E-11 1.4E-15 107.3 17.6 212 28-250 283-496 (791)
25 PRK09687 putative lyase; Provi 99.3 1.3E-10 2.8E-15 102.5 17.5 191 14-246 29-220 (280)
26 PF03224 V-ATPase_H_N: V-ATPas 99.3 2.6E-10 5.5E-15 102.6 16.2 217 20-237 69-304 (312)
27 PRK09687 putative lyase; Provi 99.2 7E-10 1.5E-14 97.9 16.7 208 38-287 8-219 (280)
28 KOG4500 Rho/Rac GTPase guanine 99.2 1.1E-09 2.4E-14 98.1 17.5 267 19-288 53-389 (604)
29 KOG1222 Kinesin associated pro 99.2 3.3E-09 7.1E-14 96.4 18.9 281 16-303 312-633 (791)
30 KOG2160 Armadillo/beta-catenin 99.2 1.6E-09 3.5E-14 95.6 16.1 189 17-205 92-283 (342)
31 PF03224 V-ATPase_H_N: V-ATPas 99.1 6.8E-09 1.5E-13 93.4 17.0 228 50-280 56-305 (312)
32 PRK13800 putative oxidoreducta 99.0 6.1E-08 1.3E-12 99.0 21.4 222 14-287 627-865 (897)
33 KOG2160 Armadillo/beta-catenin 99.0 3.9E-08 8.4E-13 86.9 17.1 185 62-249 96-285 (342)
34 PRK13800 putative oxidoreducta 99.0 1E-07 2.2E-12 97.4 21.8 222 14-286 658-896 (897)
35 cd00256 VATPase_H VATPase_H, r 98.9 9.8E-08 2.1E-12 88.1 18.8 225 21-246 157-424 (429)
36 cd00256 VATPase_H VATPase_H, r 98.9 1.2E-07 2.6E-12 87.5 18.6 270 15-290 108-426 (429)
37 KOG1293 Proteins containing ar 98.9 3.3E-08 7.2E-13 92.9 14.7 210 38-250 314-536 (678)
38 KOG4646 Uncharacterized conser 98.9 1.4E-08 3E-13 77.3 9.1 152 89-244 15-167 (173)
39 KOG0168 Putative ubiquitin fus 98.9 1.2E-07 2.7E-12 91.3 16.7 226 17-249 176-415 (1051)
40 PF01602 Adaptin_N: Adaptin N 98.7 6.7E-07 1.4E-11 86.3 17.8 254 17-301 88-342 (526)
41 KOG1293 Proteins containing ar 98.7 4.9E-07 1.1E-11 85.2 15.8 254 33-290 165-534 (678)
42 KOG4646 Uncharacterized conser 98.7 1E-07 2.3E-12 72.6 8.5 127 51-180 18-146 (173)
43 KOG0168 Putative ubiquitin fus 98.7 1E-06 2.3E-11 85.1 16.2 192 52-249 170-366 (1051)
44 PF01602 Adaptin_N: Adaptin N 98.6 1.6E-06 3.5E-11 83.6 16.8 250 14-291 48-298 (526)
45 KOG2759 Vacuolar H+-ATPase V1 98.6 2.4E-06 5.3E-11 76.9 16.2 228 19-247 168-438 (442)
46 PTZ00429 beta-adaptin; Provisi 98.5 2.9E-05 6.3E-10 77.0 21.4 222 53-293 109-330 (746)
47 KOG2973 Uncharacterized conser 98.5 1.5E-05 3.3E-10 69.2 16.7 269 14-293 9-319 (353)
48 KOG0946 ER-Golgi vesicle-tethe 98.5 4.3E-06 9.2E-11 80.5 14.3 272 19-299 34-355 (970)
49 KOG2171 Karyopherin (importin) 98.4 6.2E-06 1.3E-10 82.5 14.1 227 15-248 355-595 (1075)
50 PTZ00429 beta-adaptin; Provisi 98.3 0.00014 3.1E-09 72.2 22.4 214 18-249 115-328 (746)
51 PF00514 Arm: Armadillo/beta-c 98.3 7.4E-07 1.6E-11 54.6 4.1 40 38-77 1-40 (41)
52 PF05536 Neurochondrin: Neuroc 98.3 0.00014 3.1E-09 70.1 20.9 231 51-289 7-261 (543)
53 PF05536 Neurochondrin: Neuroc 98.3 3.4E-05 7.3E-10 74.4 16.4 230 14-247 11-261 (543)
54 KOG0946 ER-Golgi vesicle-tethe 98.3 8.8E-05 1.9E-09 71.7 18.4 212 50-267 23-264 (970)
55 KOG3678 SARM protein (with ste 98.3 1.4E-05 3E-10 73.1 12.4 163 83-249 173-338 (832)
56 PF00514 Arm: Armadillo/beta-c 98.2 2.6E-06 5.7E-11 52.1 5.1 39 209-247 3-41 (41)
57 KOG2759 Vacuolar H+-ATPase V1 98.2 6.7E-05 1.5E-09 67.8 15.7 268 14-290 120-439 (442)
58 KOG2171 Karyopherin (importin) 98.2 0.00014 3E-09 73.1 18.9 237 21-267 262-526 (1075)
59 TIGR02270 conserved hypothetic 98.2 0.00026 5.6E-09 65.8 19.1 191 51-293 88-300 (410)
60 KOG2973 Uncharacterized conser 98.2 4.9E-05 1.1E-09 66.1 13.0 189 52-249 6-206 (353)
61 PF13646 HEAT_2: HEAT repeats; 98.2 9.9E-06 2.1E-10 58.3 7.5 86 51-157 1-87 (88)
62 KOG1789 Endocytosis protein RM 98.1 0.00039 8.5E-09 69.4 19.6 212 16-230 1780-2142(2235)
63 KOG1241 Karyopherin (importin) 98.1 0.00019 4.2E-09 69.2 17.0 264 20-294 186-482 (859)
64 KOG1241 Karyopherin (importin) 98.1 0.00025 5.5E-09 68.4 17.4 272 13-293 222-534 (859)
65 PF12348 CLASP_N: CLASP N term 98.0 0.00013 2.8E-09 62.5 13.0 187 100-296 17-213 (228)
66 KOG2023 Nuclear transport rece 98.0 0.00016 3.4E-09 68.9 14.1 259 16-291 182-507 (885)
67 KOG2734 Uncharacterized conser 98.0 0.0043 9.4E-08 56.7 22.6 255 31-289 107-400 (536)
68 PF11841 DUF3361: Domain of un 97.9 0.0004 8.6E-09 55.3 13.0 133 84-216 5-143 (160)
69 KOG0212 Uncharacterized conser 97.9 0.00021 4.5E-09 66.9 12.9 224 13-248 213-445 (675)
70 KOG3678 SARM protein (with ste 97.9 0.00014 3.1E-09 66.6 11.5 169 43-218 174-348 (832)
71 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0016 3.5E-08 59.8 18.0 222 16-245 33-267 (371)
72 COG1413 FOG: HEAT repeat [Ener 97.9 0.0023 5E-08 58.1 18.9 158 49-247 74-242 (335)
73 COG1413 FOG: HEAT repeat [Ener 97.8 0.0018 3.9E-08 58.8 17.8 157 49-249 43-211 (335)
74 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0049 1.1E-07 56.6 20.5 244 34-288 10-268 (371)
75 KOG1517 Guanine nucleotide bin 97.8 0.0014 3E-08 65.5 17.6 234 51-291 474-734 (1387)
76 TIGR02270 conserved hypothetic 97.8 0.00063 1.4E-08 63.2 14.7 153 49-247 54-207 (410)
77 PF12348 CLASP_N: CLASP N term 97.8 0.00025 5.3E-09 60.8 10.9 185 17-208 16-210 (228)
78 KOG4413 26S proteasome regulat 97.8 0.0016 3.5E-08 57.4 15.5 266 16-289 90-377 (524)
79 smart00185 ARM Armadillo/beta- 97.8 6E-05 1.3E-09 45.7 4.9 40 39-78 2-41 (41)
80 smart00185 ARM Armadillo/beta- 97.8 4.8E-05 1E-09 46.1 4.5 40 80-119 2-41 (41)
81 PF10165 Ric8: Guanine nucleot 97.7 0.001 2.3E-08 62.7 14.7 241 70-312 2-300 (446)
82 PF10165 Ric8: Guanine nucleot 97.7 0.0061 1.3E-07 57.6 19.1 246 17-263 41-356 (446)
83 PF13646 HEAT_2: HEAT repeats; 97.7 0.00017 3.7E-09 51.8 6.8 86 92-200 1-88 (88)
84 KOG1517 Guanine nucleotide bin 97.7 0.002 4.2E-08 64.5 15.4 201 44-246 507-731 (1387)
85 KOG1242 Protein containing ada 97.6 0.0025 5.5E-08 60.5 14.4 230 47-290 211-445 (569)
86 KOG0212 Uncharacterized conser 97.6 0.0027 5.9E-08 59.6 14.2 238 51-297 169-414 (675)
87 KOG1789 Endocytosis protein RM 97.5 0.016 3.4E-07 58.5 19.7 120 21-141 1738-1863(2235)
88 KOG2023 Nuclear transport rece 97.5 0.0011 2.3E-08 63.4 11.4 169 13-184 133-308 (885)
89 KOG1059 Vesicle coat complex A 97.5 0.0042 9.1E-08 60.0 14.7 114 14-142 150-267 (877)
90 PF11841 DUF3361: Domain of un 97.4 0.0028 6E-08 50.5 11.1 121 125-247 5-131 (160)
91 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00016 3.5E-09 47.1 3.5 55 63-117 1-55 (55)
92 KOG1059 Vesicle coat complex A 97.4 0.027 5.8E-07 54.7 19.0 222 53-301 148-374 (877)
93 COG5369 Uncharacterized conser 97.4 0.00042 9E-09 64.6 6.6 139 108-249 407-547 (743)
94 PF09759 Atx10homo_assoc: Spin 97.4 0.00077 1.7E-08 49.7 6.6 60 191-251 2-63 (102)
95 KOG1242 Protein containing ada 97.3 0.022 4.8E-07 54.2 17.6 210 20-247 228-444 (569)
96 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00066 1.4E-08 44.2 5.5 55 189-245 1-55 (55)
97 PF09759 Atx10homo_assoc: Spin 97.3 0.0017 3.6E-08 47.9 7.5 65 150-216 3-70 (102)
98 KOG2259 Uncharacterized conser 97.2 0.0043 9.3E-08 59.4 11.8 180 51-245 236-473 (823)
99 PF04078 Rcd1: Cell differenti 97.2 0.034 7.4E-07 47.9 15.6 187 62-251 8-222 (262)
100 COG5369 Uncharacterized conser 97.1 0.0033 7.2E-08 58.8 9.5 180 34-216 416-605 (743)
101 KOG4413 26S proteasome regulat 97.1 0.049 1.1E-06 48.3 15.6 231 17-249 137-379 (524)
102 COG5240 SEC21 Vesicle coat com 97.0 0.14 3E-06 48.8 18.8 249 17-288 273-554 (898)
103 KOG3036 Protein involved in ce 97.0 0.065 1.4E-06 45.6 15.0 150 21-171 92-256 (293)
104 KOG3036 Protein involved in ce 96.9 0.076 1.7E-06 45.2 14.7 146 104-250 93-250 (293)
105 KOG1077 Vesicle coat complex A 96.9 0.029 6.2E-07 54.3 13.5 219 21-253 161-404 (938)
106 COG5181 HSH155 U2 snRNP splice 96.9 0.051 1.1E-06 52.0 15.0 147 51-205 606-760 (975)
107 KOG1062 Vesicle coat complex A 96.9 0.089 1.9E-06 51.7 16.9 55 18-78 117-171 (866)
108 KOG2734 Uncharacterized conser 96.8 0.14 3E-06 47.3 16.6 232 14-247 131-400 (536)
109 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.2 4.4E-06 50.4 19.3 241 44-289 112-406 (802)
110 KOG2999 Regulator of Rac1, req 96.8 0.038 8.2E-07 52.1 13.2 165 52-216 86-254 (713)
111 PF04063 DUF383: Domain of unk 96.7 0.0056 1.2E-07 50.8 7.0 111 60-172 6-142 (192)
112 PF04078 Rcd1: Cell differenti 96.7 0.057 1.2E-06 46.6 13.1 220 20-245 7-260 (262)
113 KOG1062 Vesicle coat complex A 96.7 0.2 4.3E-06 49.4 18.1 263 15-302 149-464 (866)
114 PF12717 Cnd1: non-SMC mitotic 96.7 0.12 2.6E-06 42.4 14.8 91 21-120 1-93 (178)
115 KOG4151 Myosin assembly protei 96.7 0.03 6.4E-07 54.9 12.2 209 34-250 489-702 (748)
116 KOG0213 Splicing factor 3b, su 96.7 0.056 1.2E-06 52.8 13.8 144 14-162 805-954 (1172)
117 KOG2259 Uncharacterized conser 96.7 0.07 1.5E-06 51.5 14.3 104 173-288 371-474 (823)
118 COG5215 KAP95 Karyopherin (imp 96.5 0.12 2.6E-06 49.2 14.8 261 21-290 191-480 (858)
119 KOG0567 HEAT repeat-containing 96.5 0.44 9.6E-06 41.1 16.6 170 45-247 63-249 (289)
120 PF08569 Mo25: Mo25-like; Int 96.4 0.57 1.2E-05 42.5 18.4 204 85-290 71-284 (335)
121 PF12717 Cnd1: non-SMC mitotic 96.4 0.13 2.7E-06 42.3 13.2 109 148-267 3-111 (178)
122 KOG1078 Vesicle coat complex C 96.4 0.46 9.9E-06 46.9 18.3 252 17-295 254-538 (865)
123 COG5181 HSH155 U2 snRNP splice 96.4 0.34 7.4E-06 46.6 17.0 270 15-309 653-931 (975)
124 KOG1060 Vesicle coat complex A 96.4 1 2.2E-05 44.7 20.5 146 148-306 302-475 (968)
125 PF12755 Vac14_Fab1_bd: Vacuol 96.4 0.029 6.3E-07 41.1 8.0 66 175-245 27-94 (97)
126 KOG1248 Uncharacterized conser 96.4 0.5 1.1E-05 48.6 19.1 227 15-247 661-898 (1176)
127 COG5231 VMA13 Vacuolar H+-ATPa 96.3 0.18 3.8E-06 44.7 13.6 225 21-246 162-427 (432)
128 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.037 8E-07 40.6 7.7 93 192-289 3-96 (97)
129 KOG1060 Vesicle coat complex A 96.2 0.16 3.6E-06 49.9 14.0 208 12-249 39-248 (968)
130 KOG2999 Regulator of Rac1, req 96.2 0.094 2E-06 49.6 11.9 156 91-248 84-243 (713)
131 PF05004 IFRD: Interferon-rela 96.1 0.57 1.2E-05 42.1 16.4 188 53-246 47-256 (309)
132 KOG1061 Vesicle coat complex A 96.0 0.13 2.7E-06 50.5 12.4 176 51-239 123-300 (734)
133 KOG1824 TATA-binding protein-i 96.0 0.22 4.7E-06 50.1 14.0 266 16-293 13-290 (1233)
134 PF05004 IFRD: Interferon-rela 95.9 0.31 6.7E-06 43.8 13.8 184 17-204 52-257 (309)
135 PF04063 DUF383: Domain of unk 95.8 0.067 1.4E-06 44.5 8.7 121 21-141 8-157 (192)
136 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.025 5.5E-07 42.8 5.5 70 176-246 44-114 (119)
137 COG5215 KAP95 Karyopherin (imp 95.8 0.81 1.8E-05 43.8 16.3 224 13-250 226-482 (858)
138 KOG1943 Beta-tubulin folding c 95.7 1.1 2.5E-05 45.8 18.0 237 48-291 340-617 (1133)
139 KOG1061 Vesicle coat complex A 95.6 0.11 2.3E-06 51.0 10.3 147 91-247 122-268 (734)
140 KOG4653 Uncharacterized conser 95.6 0.56 1.2E-05 46.8 14.9 185 55-251 733-922 (982)
141 PF08045 CDC14: Cell division 95.6 0.13 2.8E-06 44.6 9.6 97 22-118 105-206 (257)
142 PF08045 CDC14: Cell division 95.3 0.12 2.5E-06 44.8 8.7 98 66-163 108-208 (257)
143 COG5096 Vesicle coat complex, 95.3 0.7 1.5E-05 46.1 14.8 168 17-205 28-196 (757)
144 PF06371 Drf_GBD: Diaphanous G 95.3 0.037 8E-07 45.6 5.3 112 90-203 66-186 (187)
145 KOG2274 Predicted importin 9 [ 95.3 1.3 2.9E-05 44.5 16.4 185 61-250 503-692 (1005)
146 COG5096 Vesicle coat complex, 95.3 0.71 1.5E-05 46.1 14.7 168 58-248 28-196 (757)
147 KOG4535 HEAT and armadillo rep 95.2 0.0053 1.2E-07 56.8 0.1 182 64-246 406-602 (728)
148 PF02985 HEAT: HEAT repeat; I 95.2 0.041 8.9E-07 31.0 3.7 28 92-119 2-29 (31)
149 KOG2611 Neurochondrin/leucine- 95.2 2.9 6.3E-05 39.4 17.9 146 95-245 16-180 (698)
150 KOG0213 Splicing factor 3b, su 95.1 1.8 3.9E-05 42.9 16.5 217 14-250 847-1068(1172)
151 PF11698 V-ATPase_H_C: V-ATPas 95.1 0.04 8.8E-07 41.7 4.6 68 51-118 45-114 (119)
152 PF02985 HEAT: HEAT repeat; I 95.1 0.045 9.7E-07 30.9 3.6 29 220-248 2-30 (31)
153 KOG1820 Microtubule-associated 95.0 3.1 6.7E-05 42.3 18.5 194 94-299 257-453 (815)
154 PF12719 Cnd3: Nuclear condens 94.6 0.68 1.5E-05 41.4 11.9 163 15-186 34-208 (298)
155 KOG1824 TATA-binding protein-i 94.4 1.3 2.8E-05 44.9 13.9 137 7-144 608-747 (1233)
156 KOG2611 Neurochondrin/leucine- 94.4 4.7 0.0001 38.0 17.7 146 54-202 16-180 (698)
157 PF11701 UNC45-central: Myosin 94.3 0.11 2.3E-06 41.9 5.5 148 49-201 3-156 (157)
158 PF12460 MMS19_C: RNAPII trans 94.3 0.66 1.4E-05 43.5 11.7 113 91-207 272-397 (415)
159 KOG3665 ZYG-1-like serine/thre 94.2 1 2.2E-05 45.1 13.2 195 31-246 494-696 (699)
160 KOG1058 Vesicle coat complex C 94.0 1.3 2.7E-05 43.9 12.8 99 91-204 318-425 (948)
161 KOG1077 Vesicle coat complex A 94.0 7.1 0.00015 38.6 18.7 102 132-246 330-432 (938)
162 KOG1240 Protein kinase contain 93.8 0.91 2E-05 47.0 11.8 251 22-288 437-724 (1431)
163 PF12460 MMS19_C: RNAPII trans 93.7 2.2 4.8E-05 40.0 13.9 125 132-267 272-412 (415)
164 PF11701 UNC45-central: Myosin 93.6 0.31 6.8E-06 39.1 7.0 145 92-244 5-156 (157)
165 PF13764 E3_UbLigase_R4: E3 ub 93.5 9.7 0.00021 38.8 18.5 161 24-190 138-334 (802)
166 COG5231 VMA13 Vacuolar H+-ATPa 93.5 4.2 9E-05 36.4 13.9 132 94-225 153-286 (432)
167 KOG2025 Chromosome condensatio 93.4 7.2 0.00016 38.6 16.6 114 49-170 85-198 (892)
168 KOG1248 Uncharacterized conser 93.3 6.9 0.00015 40.8 17.0 219 60-291 665-900 (1176)
169 KOG4151 Myosin assembly protei 93.3 0.58 1.3E-05 46.3 9.3 157 67-226 560-720 (748)
170 PF14225 MOR2-PAG1_C: Cell mor 93.2 5.4 0.00012 34.9 15.2 213 13-245 12-252 (262)
171 PF05918 API5: Apoptosis inhib 93.2 1.1 2.4E-05 43.2 11.1 122 147-285 36-158 (556)
172 KOG1240 Protein kinase contain 93.1 3.6 7.7E-05 43.0 14.7 225 51-291 424-687 (1431)
173 PF12719 Cnd3: Nuclear condens 93.1 2.9 6.2E-05 37.3 13.1 170 49-230 26-209 (298)
174 PF05918 API5: Apoptosis inhib 93.0 3.6 7.7E-05 39.9 14.0 188 101-312 33-237 (556)
175 PF07814 WAPL: Wings apart-lik 93.0 7 0.00015 36.0 15.7 199 19-218 33-312 (361)
176 PF12031 DUF3518: Domain of un 93.0 0.58 1.3E-05 39.9 7.7 83 105-188 139-229 (257)
177 PF06371 Drf_GBD: Diaphanous G 92.9 0.34 7.3E-06 39.9 6.4 92 27-118 83-186 (187)
178 COG5209 RCD1 Uncharacterized p 92.8 1.2 2.6E-05 37.6 9.3 143 105-250 115-271 (315)
179 COG5209 RCD1 Uncharacterized p 92.8 0.56 1.2E-05 39.6 7.3 144 25-170 117-276 (315)
180 PF08324 PUL: PUL domain; Int 92.7 0.84 1.8E-05 40.0 9.0 173 23-195 78-265 (268)
181 PF08569 Mo25: Mo25-like; Int 92.6 2 4.4E-05 39.0 11.4 221 44-268 71-308 (335)
182 PF14668 RICTOR_V: Rapamycin-i 92.2 0.53 1.1E-05 32.5 5.5 67 107-175 4-70 (73)
183 PF06025 DUF913: Domain of Unk 92.2 4.2 9.1E-05 37.7 13.1 81 22-102 123-208 (379)
184 PF14668 RICTOR_V: Rapamycin-i 92.2 0.94 2E-05 31.2 6.7 67 150-219 4-71 (73)
185 KOG0211 Protein phosphatase 2A 92.1 6.3 0.00014 39.8 14.9 220 53-286 441-661 (759)
186 KOG2032 Uncharacterized conser 92.1 1.6 3.4E-05 41.1 9.9 153 90-246 254-415 (533)
187 KOG2933 Uncharacterized conser 91.8 1.4 3.1E-05 38.9 9.0 138 91-245 89-232 (334)
188 PF08324 PUL: PUL domain; Int 91.4 1.5 3.3E-05 38.4 9.0 158 92-250 65-234 (268)
189 PF06025 DUF913: Domain of Unk 91.1 13 0.00028 34.5 17.2 125 90-216 106-243 (379)
190 KOG0567 HEAT repeat-containing 90.9 1.8 3.9E-05 37.5 8.5 95 90-205 187-281 (289)
191 KOG4535 HEAT and armadillo rep 90.8 0.33 7.1E-06 45.4 4.2 155 48-204 432-603 (728)
192 KOG0211 Protein phosphatase 2A 90.5 22 0.00047 36.1 17.4 261 20-290 249-548 (759)
193 KOG2025 Chromosome condensatio 90.5 12 0.00025 37.2 14.3 126 65-199 62-188 (892)
194 KOG0414 Chromosome condensatio 90.4 1.5 3.3E-05 45.3 8.8 129 19-163 934-1065(1251)
195 PF12031 DUF3518: Domain of un 90.3 1.3 2.9E-05 37.8 7.2 84 150-234 141-232 (257)
196 KOG2956 CLIP-associating prote 89.9 14 0.00029 34.9 13.8 170 62-245 300-475 (516)
197 KOG0915 Uncharacterized conser 89.8 18 0.00039 39.0 15.9 236 5-250 1037-1309(1702)
198 KOG1820 Microtubule-associated 89.6 11 0.00025 38.3 14.2 197 41-247 241-443 (815)
199 PF14726 RTTN_N: Rotatin, an a 89.4 2 4.4E-05 31.4 6.7 93 23-115 2-96 (98)
200 KOG2956 CLIP-associating prote 89.0 15 0.00032 34.7 13.3 173 21-205 300-478 (516)
201 cd03568 VHS_STAM VHS domain fa 88.9 2.2 4.8E-05 33.7 7.2 72 176-247 38-110 (144)
202 KOG0915 Uncharacterized conser 88.9 3.5 7.5E-05 44.0 10.1 173 50-228 999-1182(1702)
203 KOG1943 Beta-tubulin folding c 88.7 12 0.00027 38.7 13.6 150 131-290 341-501 (1133)
204 KOG2274 Predicted importin 9 [ 88.3 27 0.00058 35.7 15.3 221 60-294 461-694 (1005)
205 cd03561 VHS VHS domain family; 87.5 4 8.7E-05 31.7 7.8 72 176-247 38-112 (133)
206 PF07814 WAPL: Wings apart-lik 87.4 13 0.00028 34.3 12.2 198 51-250 23-302 (361)
207 KOG1967 DNA repair/transcripti 87.4 2 4.4E-05 43.4 7.2 148 49-199 867-1019(1030)
208 KOG0301 Phospholipase A2-activ 87.3 8.7 0.00019 37.7 11.1 165 16-186 552-727 (745)
209 cd03569 VHS_Hrs_Vps27p VHS dom 87.0 3.6 7.7E-05 32.4 7.2 72 176-247 42-114 (142)
210 KOG1788 Uncharacterized conser 86.9 15 0.00032 38.4 12.7 214 29-249 663-984 (2799)
211 KOG2062 26S proteasome regulat 86.5 36 0.00078 34.1 14.8 67 173-249 552-620 (929)
212 cd03567 VHS_GGA VHS domain fam 86.1 4.3 9.3E-05 31.8 7.2 72 176-247 39-116 (139)
213 KOG1020 Sister chromatid cohes 86.0 35 0.00075 37.0 15.2 141 90-249 816-962 (1692)
214 KOG1058 Vesicle coat complex C 86.0 13 0.00028 37.1 11.6 104 91-205 244-347 (948)
215 KOG1832 HIV-1 Vpr-binding prot 85.9 6.4 0.00014 40.0 9.6 193 41-248 593-825 (1516)
216 COG5116 RPN2 26S proteasome re 85.9 2.7 5.8E-05 40.4 6.9 66 174-249 550-617 (926)
217 PF06685 DUF1186: Protein of u 85.8 23 0.00049 30.8 13.9 112 48-183 30-161 (249)
218 PF08167 RIX1: rRNA processing 85.6 8.7 0.00019 31.0 9.1 113 175-291 25-145 (165)
219 KOG2137 Protein kinase [Signal 85.2 4.9 0.00011 39.6 8.5 136 47-191 387-524 (700)
220 KOG0414 Chromosome condensatio 84.9 4.3 9.4E-05 42.2 8.2 140 50-204 920-1064(1251)
221 PF10363 DUF2435: Protein of u 84.0 3 6.6E-05 30.1 5.1 68 52-120 6-73 (92)
222 PF01347 Vitellogenin_N: Lipop 83.6 29 0.00063 34.3 13.6 134 91-244 432-586 (618)
223 KOG1243 Protein kinase [Genera 83.5 6.7 0.00015 38.6 8.5 189 87-289 327-515 (690)
224 smart00288 VHS Domain present 82.3 7.8 0.00017 30.0 7.2 72 176-247 38-111 (133)
225 KOG1991 Nuclear transport rece 81.9 68 0.0015 33.2 18.6 121 19-142 429-558 (1010)
226 KOG4653 Uncharacterized conser 81.6 24 0.00052 35.8 11.6 216 16-244 735-961 (982)
227 KOG1949 Uncharacterized conser 81.1 62 0.0013 32.4 13.8 146 93-250 177-334 (1005)
228 PF12530 DUF3730: Protein of u 80.5 36 0.00078 29.1 17.1 138 52-204 3-151 (234)
229 KOG2032 Uncharacterized conser 79.9 57 0.0012 31.1 18.2 255 17-289 267-531 (533)
230 KOG1243 Protein kinase [Genera 79.9 5.9 0.00013 39.0 6.8 187 46-246 327-514 (690)
231 COG5240 SEC21 Vesicle coat com 79.4 65 0.0014 31.5 19.3 57 62-120 277-333 (898)
232 KOG1991 Nuclear transport rece 78.6 51 0.0011 34.1 12.9 137 48-188 409-560 (1010)
233 smart00638 LPD_N Lipoprotein N 78.4 71 0.0015 31.3 15.5 135 90-244 393-542 (574)
234 PF12830 Nipped-B_C: Sister ch 78.4 36 0.00079 28.0 11.0 145 51-206 10-169 (187)
235 KOG2137 Protein kinase [Signal 78.0 12 0.00026 37.0 8.2 141 89-238 388-528 (700)
236 PF00790 VHS: VHS domain; Int 77.4 7.6 0.00016 30.4 5.8 72 176-247 43-118 (140)
237 KOG1967 DNA repair/transcripti 77.2 5.4 0.00012 40.5 5.7 108 48-157 908-1019(1030)
238 PF11865 DUF3385: Domain of un 76.8 14 0.0003 29.7 7.3 143 51-203 12-156 (160)
239 PF08167 RIX1: rRNA processing 76.6 25 0.00055 28.3 8.8 111 132-248 26-144 (165)
240 PF11707 Npa1: Ribosome 60S bi 76.6 59 0.0013 29.5 18.6 158 92-249 58-239 (330)
241 KOG0301 Phospholipase A2-activ 76.5 84 0.0018 31.2 15.9 166 54-229 549-727 (745)
242 cd03568 VHS_STAM VHS domain fa 76.0 5.8 0.00013 31.3 4.7 72 49-120 37-111 (144)
243 PF10363 DUF2435: Protein of u 75.7 13 0.00028 26.8 6.1 70 135-208 7-76 (92)
244 PF14500 MMS19_N: Dos2-interac 74.4 59 0.0013 28.4 14.1 141 52-202 2-151 (262)
245 PF14726 RTTN_N: Rotatin, an a 73.7 33 0.00071 25.1 7.9 69 173-243 28-96 (98)
246 cd03567 VHS_GGA VHS domain fam 73.6 8.5 0.00018 30.2 5.1 70 50-119 39-116 (139)
247 PLN03076 ARF guanine nucleotid 73.5 82 0.0018 35.4 13.9 265 20-292 1149-1492(1780)
248 COG5116 RPN2 26S proteasome re 73.1 29 0.00063 33.8 9.1 123 89-229 550-673 (926)
249 cd03561 VHS VHS domain family; 72.5 11 0.00025 29.1 5.6 71 50-120 38-113 (133)
250 PF11865 DUF3385: Domain of un 72.4 49 0.0011 26.5 10.2 144 90-245 10-155 (160)
251 COG5218 YCG1 Chromosome conden 72.0 23 0.00049 34.6 8.2 110 49-166 91-200 (885)
252 cd03572 ENTH_epsin_related ENT 71.5 17 0.00038 27.7 6.2 70 176-245 39-117 (122)
253 KOG1020 Sister chromatid cohes 71.3 56 0.0012 35.5 11.4 109 49-166 816-925 (1692)
254 PF10521 DUF2454: Protein of u 70.8 46 0.001 29.4 9.7 72 89-160 118-201 (282)
255 COG5098 Chromosome condensatio 70.8 42 0.00092 33.5 9.8 127 177-308 301-440 (1128)
256 PF13251 DUF4042: Domain of un 70.6 52 0.0011 27.1 9.2 108 94-206 44-176 (182)
257 KOG2062 26S proteasome regulat 69.6 1.3E+02 0.0029 30.4 17.5 127 95-246 524-652 (929)
258 PF14500 MMS19_N: Dos2-interac 69.6 47 0.001 29.1 9.3 145 93-246 2-152 (262)
259 smart00288 VHS Domain present 69.1 9.7 0.00021 29.5 4.5 74 90-163 37-112 (133)
260 cd03569 VHS_Hrs_Vps27p VHS dom 68.8 11 0.00024 29.6 4.8 72 49-120 41-115 (142)
261 PF12231 Rif1_N: Rap1-interact 68.6 99 0.0021 28.6 14.6 136 103-247 59-204 (372)
262 COG5218 YCG1 Chromosome conden 68.5 95 0.0021 30.5 11.4 78 168-249 86-163 (885)
263 PF08216 CTNNBL: Catenin-beta- 67.2 7.1 0.00015 29.0 3.1 43 25-67 63-105 (108)
264 PF08389 Xpo1: Exportin 1-like 66.9 20 0.00044 27.6 6.1 127 65-199 4-148 (148)
265 PF10521 DUF2454: Protein of u 66.7 56 0.0012 28.9 9.4 70 49-118 119-202 (282)
266 cd00197 VHS_ENTH_ANTH VHS, ENT 66.2 44 0.00096 24.8 7.5 70 176-245 38-113 (115)
267 PF03130 HEAT_PBS: PBS lyase H 65.7 4.4 9.4E-05 21.8 1.4 27 65-101 1-27 (27)
268 KOG1078 Vesicle coat complex C 63.5 1.8E+02 0.0038 29.7 15.9 215 57-288 253-494 (865)
269 PF12074 DUF3554: Domain of un 63.2 88 0.0019 28.3 10.3 197 48-250 21-238 (339)
270 KOG3665 ZYG-1-like serine/thre 62.1 1.1E+02 0.0023 31.1 11.2 136 113-250 494-657 (699)
271 PF01347 Vitellogenin_N: Lipop 61.6 18 0.00038 35.8 5.8 93 48-157 485-584 (618)
272 PF14663 RasGEF_N_2: Rapamycin 61.1 12 0.00026 28.3 3.5 41 89-129 7-47 (115)
273 PF12530 DUF3730: Protein of u 60.7 1.1E+02 0.0023 26.2 13.2 130 16-161 9-150 (234)
274 PF08216 CTNNBL: Catenin-beta- 60.0 9.7 0.00021 28.4 2.7 41 66-106 63-103 (108)
275 PF04064 DUF384: Domain of unk 59.6 37 0.00081 22.2 5.1 49 199-249 2-51 (58)
276 KOG4464 Signaling protein RIC- 59.3 1.6E+02 0.0034 27.7 11.0 135 93-229 48-198 (532)
277 cd03565 VHS_Tom1 VHS domain fa 57.7 85 0.0018 24.6 7.9 72 176-247 39-115 (141)
278 PF01365 RYDR_ITPR: RIH domain 57.2 29 0.00062 29.0 5.6 117 127-250 39-172 (207)
279 KOG4464 Signaling protein RIC- 57.1 55 0.0012 30.5 7.5 164 38-206 39-233 (532)
280 cd08050 TAF6 TATA Binding Prot 56.0 55 0.0012 29.9 7.6 110 51-160 212-338 (343)
281 COG5098 Chromosome condensatio 55.9 68 0.0015 32.2 8.2 153 90-249 240-418 (1128)
282 PF12231 Rif1_N: Rap1-interact 55.8 1.7E+02 0.0037 27.0 11.5 180 100-288 3-203 (372)
283 PF14666 RICTOR_M: Rapamycin-i 55.4 1.3E+02 0.0029 25.6 11.6 129 63-203 78-224 (226)
284 KOG2933 Uncharacterized conser 54.7 1.6E+02 0.0035 26.5 9.7 108 179-290 92-200 (334)
285 PF14663 RasGEF_N_2: Rapamycin 54.7 32 0.0007 25.8 4.9 39 50-88 9-47 (115)
286 smart00567 EZ_HEAT E-Z type HE 53.3 19 0.0004 19.5 2.6 28 64-101 2-29 (30)
287 smart00638 LPD_N Lipoprotein N 51.7 2.4E+02 0.0053 27.6 12.3 53 91-145 312-371 (574)
288 PF11707 Npa1: Ribosome 60S bi 50.8 1.2E+02 0.0025 27.5 8.8 101 23-123 129-241 (330)
289 PF06012 DUF908: Domain of Unk 50.4 55 0.0012 29.7 6.6 64 65-128 238-306 (329)
290 PF08506 Cse1: Cse1; InterPro 49.9 99 0.0022 28.6 8.2 130 105-242 226-370 (370)
291 PF00790 VHS: VHS domain; Int 49.8 90 0.002 24.2 7.0 70 219-289 43-118 (140)
292 PF06012 DUF908: Domain of Unk 49.7 93 0.002 28.2 8.0 64 35-98 249-324 (329)
293 PF08506 Cse1: Cse1; InterPro 49.5 1.7E+02 0.0036 27.1 9.6 126 64-199 226-370 (370)
294 KOG2676 Uncharacterized conser 49.0 15 0.00033 33.4 2.6 61 69-129 376-440 (478)
295 PLN03205 ATR interacting prote 48.2 82 0.0018 29.4 7.1 114 132-249 324-448 (652)
296 PF12726 SEN1_N: SEN1 N termin 47.7 3.2E+02 0.007 27.8 14.4 150 96-250 447-611 (727)
297 PF11864 DUF3384: Domain of un 47.5 2.6E+02 0.0056 26.7 17.3 99 179-288 217-329 (464)
298 KOG2199 Signal transducing ada 47.4 79 0.0017 29.3 6.9 72 176-247 46-118 (462)
299 KOG1566 Conserved protein Mo25 47.1 2.2E+02 0.0047 25.7 13.9 207 43-253 73-292 (342)
300 PF12726 SEN1_N: SEN1 N termin 46.8 1.8E+02 0.004 29.5 10.3 112 52-169 444-559 (727)
301 KOG2676 Uncharacterized conser 44.8 19 0.00042 32.7 2.6 55 195-250 376-432 (478)
302 PRK14707 hypothetical protein; 43.5 5.9E+02 0.013 29.7 17.8 270 19-294 176-450 (2710)
303 KOG0413 Uncharacterized conser 43.2 1.4E+02 0.0031 31.3 8.5 125 150-289 948-1073(1529)
304 COG5537 IRR1 Cohesin [Cell div 42.1 3.6E+02 0.0078 26.8 10.7 134 62-205 288-423 (740)
305 PF10274 ParcG: Parkin co-regu 41.3 81 0.0018 26.0 5.6 70 51-120 40-110 (183)
306 PF13251 DUF4042: Domain of un 40.9 2E+02 0.0044 23.6 10.1 111 178-289 42-174 (182)
307 KOG0891 DNA-dependent protein 40.3 5.4E+02 0.012 30.3 13.1 198 85-290 560-764 (2341)
308 PF12830 Nipped-B_C: Sister ch 40.2 67 0.0015 26.4 5.1 65 176-249 9-76 (187)
309 PF04388 Hamartin: Hamartin pr 40.1 1.8E+02 0.004 29.3 9.0 118 90-208 4-144 (668)
310 KOG2549 Transcription initiati 37.6 4E+02 0.0087 26.0 10.5 110 51-160 241-368 (576)
311 KOG1832 HIV-1 Vpr-binding prot 36.8 1.3E+02 0.0027 31.3 7.0 101 21-130 675-784 (1516)
312 PF11791 Aconitase_B_N: Aconit 36.6 56 0.0012 26.0 3.7 26 132-159 95-120 (154)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 35.8 1.8E+02 0.0039 21.5 6.8 69 219-287 38-113 (115)
314 PF15573 Imm27: Immunity prote 35.5 1.5E+02 0.0033 25.2 6.3 72 52-142 49-122 (259)
315 PF04821 TIMELESS: Timeless pr 34.9 3.1E+02 0.0067 24.0 10.8 81 41-121 32-151 (266)
316 PF12397 U3snoRNP10: U3 small 34.0 1.5E+02 0.0033 22.1 5.9 67 176-249 7-76 (121)
317 PF07923 N1221: N1221-like pro 33.4 47 0.001 29.5 3.4 56 87-142 57-127 (293)
318 cd03572 ENTH_epsin_related ENT 33.1 1.5E+02 0.0032 22.7 5.5 71 132-204 39-119 (122)
319 KOG1788 Uncharacterized conser 32.9 3.4E+02 0.0074 29.2 9.3 80 82-163 900-983 (2799)
320 PF12463 DUF3689: Protein of u 32.8 3.7E+02 0.0079 24.2 13.0 126 125-250 3-176 (303)
321 PF14631 FancD2: Fanconi anaem 32.1 7.6E+02 0.016 27.6 15.5 147 89-245 430-582 (1426)
322 PF13001 Ecm29: Proteasome sta 31.4 3.7E+02 0.0081 25.9 9.4 190 44-248 226-444 (501)
323 cd03565 VHS_Tom1 VHS domain fa 31.0 1.3E+02 0.0029 23.5 5.2 71 50-120 39-116 (141)
324 KOG1087 Cytosolic sorting prot 30.0 1.7E+02 0.0036 28.1 6.4 69 176-244 39-109 (470)
325 KOG4231 Intracellular membrane 29.6 13 0.00028 35.4 -0.8 59 146-204 341-399 (763)
326 KOG1992 Nuclear export recepto 29.4 6.6E+02 0.014 26.1 13.8 44 50-93 499-543 (960)
327 COG5656 SXM1 Importin, protein 28.7 6.6E+02 0.014 25.8 14.9 83 44-128 455-537 (970)
328 PF08389 Xpo1: Exportin 1-like 28.5 1.3E+02 0.0028 23.0 4.8 49 189-242 100-148 (148)
329 PF07571 DUF1546: Protein of u 27.2 1.4E+02 0.003 21.4 4.3 59 102-160 18-76 (92)
330 PF07571 DUF1546: Protein of u 26.9 1.7E+02 0.0037 20.9 4.8 57 61-117 18-76 (92)
331 PF04499 SAPS: SIT4 phosphatas 26.7 4.1E+02 0.0089 25.5 8.6 75 173-247 60-149 (475)
332 PF10274 ParcG: Parkin co-regu 26.5 3.7E+02 0.008 22.2 8.4 71 90-163 38-110 (183)
333 KOG1525 Sister chromatid cohes 26.1 1.8E+02 0.0039 31.6 6.5 71 48-118 258-328 (1266)
334 PF09324 DUF1981: Domain of un 26.1 1.1E+02 0.0024 21.6 3.6 64 47-114 15-83 (86)
335 PF07923 N1221: N1221-like pro 25.5 82 0.0018 28.0 3.5 55 47-101 58-127 (293)
336 KOG4524 Uncharacterized conser 24.9 1.5E+02 0.0033 30.8 5.5 86 16-101 811-900 (1014)
337 PF14666 RICTOR_M: Rapamycin-i 24.8 4.4E+02 0.0096 22.5 12.3 131 103-246 77-224 (226)
338 KOG2038 CAATT-binding transcri 23.6 8.2E+02 0.018 25.2 12.8 103 176-288 305-408 (988)
339 PF12331 DUF3636: Protein of u 23.2 1.6E+02 0.0034 23.4 4.2 39 148-186 109-147 (149)
340 KOG4231 Intracellular membrane 22.8 1.4E+02 0.003 28.9 4.4 60 60-119 339-399 (763)
341 PF04499 SAPS: SIT4 phosphatas 22.5 3.4E+02 0.0075 26.1 7.2 79 40-118 53-147 (475)
342 KOG2199 Signal transducing ada 21.1 2.2E+02 0.0047 26.6 5.2 70 50-119 46-118 (462)
343 PF12331 DUF3636: Protein of u 20.8 1.2E+02 0.0026 24.1 3.1 55 47-101 78-147 (149)
344 PF12463 DUF3689: Protein of u 20.5 6.3E+02 0.014 22.7 13.3 121 129-249 93-223 (303)
345 PF09450 DUF2019: Domain of un 20.2 67 0.0014 23.9 1.5 27 50-76 48-74 (106)
No 1
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=225.13 Aligned_cols=279 Identities=19% Similarity=0.166 Sum_probs=252.6
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
.++++.++.+|..+..++.+..-+.+|+..+++.+++++|+.-+..+..+++-.++.+++||+..+++|..|...|++.+
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p 171 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEP 171 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence 45688899999999999997777889999999999999998877777888999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD 174 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 174 (314)
+.++-++.+..++.++.++|.|+....+||..++..|++|.||.++++++. +++..|+.++.|++.+..+|+.++ +.
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~--dvqyycttaisnIaVd~~~Rk~La-qa 248 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL--DVQYYCTTAISNIAVDRRARKILA-QA 248 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh--hHHHHHHHHhhhhhhhHHHHHHHH-hc
Confidence 999888889999999999999999999999999999999999999999866 788999999999999999999998 67
Q ss_pred C--CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-
Q 021317 175 G--GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE- 251 (314)
Q Consensus 175 g--~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~- 251 (314)
| .|+.|+.++++++++++..|.-+|.||+... +++..++++|++|.+++++++..-..--..+.+++|++-|+-.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 7 9999999999999999999999999999875 7899999999999999999988877778888999999988843
Q ss_pred -hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021317 252 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQ 301 (314)
Q Consensus 252 -~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~ 301 (314)
...+.|++.++|..|. ...+++++.+|...|++|+. |.|+|++.+..
T Consensus 327 ~lI~dagfl~pLVrlL~--~~dnEeiqchAvstLrnLAa-sse~n~~~i~e 374 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLR--AGDNEEIQCHAVSTLRNLAA-SSEHNVSVIRE 374 (550)
T ss_pred cceecccchhHHHHHHh--cCCchhhhhhHHHHHHHHhh-hhhhhhHHHhh
Confidence 5667999999988776 44458899999999999996 67888877543
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=251.73 Aligned_cols=276 Identities=22% Similarity=0.227 Sum_probs=236.7
Q ss_pred eeccccC--CHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhc
Q 021317 14 VFMETYF--EGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~--~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~ 89 (314)
++-|.++ +++.|+.++..|. ++..+++||..+.+ .|++|.|+.+|.++++.+++.|+.+|.+|+.+++++..|...
T Consensus 19 ve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~ 98 (2102)
T PLN03200 19 IEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG 98 (2102)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 4566655 7899999999999 99999999999996 899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC---CCchh-hhhcCCcHHHHHHhhccCCchH-HHHHHHHHHHHhcCCh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK---ENSSP-ILDATAVPPLINLLKDCKKYSK-FAEKATALLEILSSSE 164 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~~~~~-i~~~g~i~~Lv~lL~~~~~~~~-~~~~a~~~L~~L~~~~ 164 (314)
|++|+|+.+|++++++.+++|+.+|.+|+.++ .++.. ++..|++|+|++++++++.... +.+.++.+|.||+.+.
T Consensus 99 GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~ 178 (2102)
T PLN03200 99 GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST 178 (2102)
T ss_pred CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999763 34544 5579999999999999753223 5567789999999999
Q ss_pred hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHH
Q 021317 165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLD 243 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~ 243 (314)
+++...+.+.|+||.++.+|+++++..+..|+.+|.+++.+.+ +.++.+++.|++|.|+++++++ ++.+|++|+|+|+
T Consensus 179 en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~ 257 (2102)
T PLN03200 179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE 257 (2102)
T ss_pred cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence 9886553379999999999999999999999999999998764 6799999999999999999875 5699999999999
Q ss_pred HhhcCCch---hhcchhhhHHHHHHHhhcCC------CHHHHHHHHHHHHHHHHHH
Q 021317 244 LLRDTPQE---KRLSSSVLEKIVYDIAARVD------GADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 244 ~l~~~~~~---~~~~~~~~~~lv~~l~~~~~------~~~~~~~~A~~~L~~l~~~ 290 (314)
+++.++.+ ..++.|+++.++..+..... .+...++.|.++|.|+...
T Consensus 258 nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 258 ALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 99987643 46678999999877752110 1234589999999998863
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3.6e-28 Score=251.76 Aligned_cols=275 Identities=20% Similarity=0.204 Sum_probs=239.1
Q ss_pred cceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhh
Q 021317 11 GVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAA 88 (314)
Q Consensus 11 ~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~ 88 (314)
.++|.|+.+++.+.|+.++++|. ++.++++++..+.+.|++|.|+++|.++++..+..|+++|.||+.. ++++..|.+
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45688999999999999999999 7778899999999999999999999999999999999999999974 578889999
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG- 166 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~- 166 (314)
.|++|+|+++|.+++..++++|+|+|.||+.+++++..++ +.|++++|+++|++++. +.++.|+.+|.||..+.+.
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~--~~q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP--KGQEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999999999999998776666655 68999999999999754 7788999999998643221
Q ss_pred ------------------------------------hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 167 ------------------------------------RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 167 ------------------------------------~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
........|+++.|+.+++++++.+++.|+++|.+++..++ ++
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~-d~ 643 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ-DL 643 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh-HH
Confidence 11111247899999999999999999999999999999875 77
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317 211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD 286 (314)
Q Consensus 211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~ 286 (314)
.+.++..|++++|+.++++++..+++.|+++|.++..+..+ .++..|++++++..|. +++.+..+.|..+|.+
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~---~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK---SSSIEVAEQAVCALAN 720 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999965532 2456889999887775 5568899999999999
Q ss_pred HHHHH
Q 021317 287 MVQRS 291 (314)
Q Consensus 287 l~~~s 291 (314)
+.++.
T Consensus 721 Ll~~~ 725 (2102)
T PLN03200 721 LLSDP 725 (2102)
T ss_pred HHcCc
Confidence 99754
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=210.27 Aligned_cols=268 Identities=22% Similarity=0.266 Sum_probs=240.8
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC--cHH
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG--AAP 93 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~ 93 (314)
+-++.+..+|..++.+|.+..++.+||+.++.+|++|.|++++++++++++..++.++.|++.+..+|+.+++.| .+|
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~ 254 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVP 254 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHH
Confidence 456788999999999999888999999999999999999999999999999999999999999999999999877 999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
.|++++++++++++..|..+|+||+.+.+.+..+++.|.+|.++++++++.. +.......++.|++.++-|-.-++ +
T Consensus 255 ~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVaCIrnisihplNe~lI~-d 331 (550)
T KOG4224|consen 255 ALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG--PLILASVACIRNISIHPLNEVLIA-D 331 (550)
T ss_pred HHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch--hHHHHHHHHHhhcccccCccccee-c
Confidence 9999999999999999999999999999999999999999999999988643 666778889999999999988888 7
Q ss_pred cCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc--
Q 021317 174 DGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ-- 250 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~-- 250 (314)
.|.+.+|+++|+.++ .+++..|..+|+||+... +.++..+.+.|++|.|..++.++.-.+|+.-.+++..|+-...
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence 999999999998765 669999999999999865 3779999999999999999999999999988888888875443
Q ss_pred hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 251 EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 251 ~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+.....|+++-+++.+. +.+++.+..|+.+|.||..+
T Consensus 411 ~~lld~gi~~iLIp~t~---s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 411 EALLDSGIIPILIPWTG---SESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHhhcCCcceeecccC---ccchhhcccHHHHHHhhhhh
Confidence 35677899988776665 55678899999999999854
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-26 Score=212.36 Aligned_cols=280 Identities=16% Similarity=0.185 Sum_probs=238.9
Q ss_pred eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
|..|+ ..++..|..|.|+|. .++++.+.-..+++.|++|.|+.++.+++.+++++|+++|+|++.+. .+|..+.+.|
T Consensus 115 V~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g 194 (514)
T KOG0166|consen 115 VEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG 194 (514)
T ss_pred HHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc
Confidence 34444 556999999999999 77888888888889999999999999999999999999999999975 7788889999
Q ss_pred cHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 91 AAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
++++|+.++..+++ ....++.|+|.||+....-...+.. ..++|.|..++.+.+. .+...|++++..|+.+...+.
T Consensus 195 ~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~i 272 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKI 272 (514)
T ss_pred chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHH
Confidence 99999999998876 7889999999999987754444444 5789999999998654 788899999999998766655
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~ 247 (314)
.++.+.|.++.|+.+|.+.+..++..|++++.|++.++. ...+.+++.|+++.|..++. +..+.+++.|+|++.|++.
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 555589999999999999999999999999999998874 67788889999999999888 4566799999999999998
Q ss_pred CCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021317 248 TPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRI 299 (314)
Q Consensus 248 ~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~ 299 (314)
+.++ .++.++.++.++..|. .+..+.|.+|++++.|+....-+.-.+.+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~---~~ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQ---TAEFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHh---ccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 7754 5677899998887776 56689999999999999976654444443
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.7e-25 Score=203.14 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=229.1
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCCChhHH-hhcC
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAI-AASG 90 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~i-~~~g 90 (314)
+.++.++++.++++|+|||. .+.+++..|..+.+.|++++|+.++..+++ .....++++|.||+....-...+ .-..
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 67889999999999999999 778889999999999999999999987765 67788999999999875433332 2467
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
++|.|..++++.|+++...|+|+|.+|+..+ +.-..+++.|+++.|+++|.+... .++..|++++.|++.+.+.+.+
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHH
Confidence 8999999999999999999999999999554 556667789999999999999765 6778999999999999888877
Q ss_pred HHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 170 ITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
.+...|+++.|..++. +....++..|+|++.|++.+++ +..++++++|.+|.|+.++..++..+|+.|+|++.|++.+
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 7668999999999998 4556799999999999999886 6788999999999999999999999999999999999877
Q ss_pred Cchh----hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 249 PQEK----RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 249 ~~~~----~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
...+ +++.|+++++...|- ..+.+.-..+...|.++.+.
T Consensus 395 g~~~qi~yLv~~giI~plcdlL~---~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 395 GTPEQIKYLVEQGIIKPLCDLLT---CPDVKIILVALDGLENILKV 437 (514)
T ss_pred CCHHHHHHHHHcCCchhhhhccc---CCChHHHHHHHHHHHHHHHH
Confidence 7432 345777777755552 22345577777788877754
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.92 E-value=4.2e-24 Score=183.98 Aligned_cols=281 Identities=17% Similarity=0.128 Sum_probs=230.8
Q ss_pred cccCCHHHHHHHHHHhH--hhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhH-HhhcCcH
Q 021317 17 ETYFEGYARRLNLMGPL--WQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPA-IAASGAA 92 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~--l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~-i~~~g~l 92 (314)
|.|+|.+.|..|+.-+. +..++..--..+++.|+||.++++|++ ...-.+..|+++|.|++.....+.. +++.|++
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 56778888888888887 555555566788899999999999954 4555778999999999997665555 4599999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh--hhhH
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE--GRIA 169 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~ 169 (314)
|.++++|.+++.++++.+.|+|.|++. ++..|..+.++|++++++.++.+....-.+..+++++|.|||++.. .-..
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~ 239 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS 239 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence 999999999999999999999999995 4567888999999999999999876656788999999999998832 2233
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
-+ ..++|.|.+++-+.++++.-.|+|++..|+... ++.-+++.+.|..+.|++++.+.+..++..|.+.+.|+.-+.
T Consensus 240 ~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 240 NI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 33 348999999999999999999999999999876 477889999999999999999999999999999999997655
Q ss_pred c---hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021317 250 Q---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAAS 305 (314)
Q Consensus 250 ~---~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~ 305 (314)
. +..+..|++..+-+.|. +..++.+..|++.+.|+.+-+.|.- +.+..+++
T Consensus 317 D~QTqviI~~G~L~a~~~lLs---~~ke~irKEaCWTiSNITAGnteqi--qavid~nl 370 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLS---SPKENIRKEACWTISNITAGNTEQI--QAVIDANL 370 (526)
T ss_pred ccceehheecccHHHHHHHhc---ChhhhhhhhhheeecccccCCHHHH--HHHHhccc
Confidence 3 24567898887766555 3346789999999999997655543 33455554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=3.4e-24 Score=184.57 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=209.7
Q ss_pred ccCCHHHHHHHHHHhHhhccCchhHH-HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHH
Q 021317 18 TYFEGYARRLNLMGPLWQLSKTRNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLL 95 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~L 95 (314)
+...+..|..|.|+|.+.+....++. .+++.|+||.++++|.+++.+++++++++|+|++.+. .+|..+.+.|+++++
T Consensus 125 ~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl 204 (526)
T COG5064 125 EIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204 (526)
T ss_pred hcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH
Confidence 55667789999999995544445554 5558999999999999999999999999999999975 668888899999988
Q ss_pred HHHhccCCH--HHHHHHHHHHHHhcC------------------------------------------CC-CCchhhhhc
Q 021317 96 VQILHSGSV--QGRVDAVTALHYLST------------------------------------------CK-ENSSPILDA 130 (314)
Q Consensus 96 v~lL~~~~~--~~~~~a~~~L~nLs~------------------------------------------~~-~~~~~i~~~ 130 (314)
+.++.++.. ....++.|.|.||+. .+ +....+.+.
T Consensus 205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~ 284 (526)
T COG5064 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDV 284 (526)
T ss_pred HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Confidence 888765422 444555555555543 33 334456788
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
|+.+.|+++|.+.+. .++..+++.+.|+.++.+.+.+++-..|+++.+..+|.+....++..|||++.|++.++. +.
T Consensus 285 g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt-eq 361 (526)
T COG5064 285 GIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT-EQ 361 (526)
T ss_pred CCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCH-HH
Confidence 999999999998654 778899999999999988877766589999999999999888999999999999999875 67
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--h----hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 021317 211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--K----RLSSSVLEKIVYDIAARVDGADKAAETAKRLL 284 (314)
Q Consensus 211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~----~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L 284 (314)
.+++++++.+|+|++++..-+-.+++.|+|++.|...+... . ++..|++.++...|. .. +.+.-+-|..++
T Consensus 362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-~~--dNkiiev~LD~~ 438 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VV--DNKIIEVALDAI 438 (526)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-cc--CccchhhhHHHH
Confidence 78899999999999999999999999999999999876632 1 345677777654443 11 224556666666
Q ss_pred HHHHH
Q 021317 285 QDMVQ 289 (314)
Q Consensus 285 ~~l~~ 289 (314)
.+..+
T Consensus 439 eniLk 443 (526)
T COG5064 439 ENILK 443 (526)
T ss_pred HHHHh
Confidence 66654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=1.1e-21 Score=189.21 Aligned_cols=267 Identities=21% Similarity=0.202 Sum_probs=220.4
Q ss_pred HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc
Q 021317 22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS 101 (314)
Q Consensus 22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~ 101 (314)
++....+...|.+.+.++.+...+.+.|+|+.|+++|++++.++...++.+|.+|+.+.+||..+.+.|++++|++++.+
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 34444555556688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHH
Q 021317 102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLV 181 (314)
Q Consensus 102 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv 181 (314)
++..++..++++|.|||.++++|..+++.|++|.|+.+|.+++ .+..++++|++||.+++.|..+. ..+++|.++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~----~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~ 417 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN----FREVALKILYNLSMDDEARSMFA-YTDCIPQLM 417 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc----hHHHHHHHHHHhccCHhhHHHHh-hcchHHHHH
Confidence 9999999999999999999999999999999999999998753 34569999999999999999888 689999999
Q ss_pred HHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHh-hhcCCHHHHHHHHHHHHHhhcCCc-hhhcchhh
Q 021317 182 ETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL-TVEGTFEAQERARTLLDLLRDTPQ-EKRLSSSV 258 (314)
Q Consensus 182 ~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~ 258 (314)
.++.++ ++.+...++..+.|++.+. .+.+.+.+.|+++.|++. ++..++- -..+++|++.|.. .+..-...
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~ 491 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDF 491 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHH
Confidence 987654 4666677888999999876 568899999999999984 4444433 2359999999884 33333456
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021317 259 LEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRA 303 (314)
Q Consensus 259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~ 303 (314)
+..++..+. ...+++..-.+..+|.|+.- ++.++.++.++.
T Consensus 492 i~~L~~~v~--~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~ 532 (708)
T PF05804_consen 492 IGDLAKIVS--SGDSEEFVVECLGILANLTI--PDLDWAQLLQEY 532 (708)
T ss_pred HHHHHHHhh--cCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhC
Confidence 666665554 23357778888888888883 456777776653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=1.9e-18 Score=166.97 Aligned_cols=272 Identities=19% Similarity=0.166 Sum_probs=220.1
Q ss_pred eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317 13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 92 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l 92 (314)
++.+|++++.+....++..|..++...+||..|.+.|++++|++++.+++.+++..++++|.|||.+++.|..+++.|.+
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlI 374 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLI 374 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence 46778999999999999999977788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
|.|+.+|.+++ .+..++.+|.+||.++++|..+...+++|.+++++.++... .+...+++++.||+.++.+.+.+.
T Consensus 375 PkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~- 450 (708)
T PF05804_consen 375 PKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMC- 450 (708)
T ss_pred HHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHH-
Confidence 99999998654 56779999999999999999999999999999998775432 444557788888888888887777
Q ss_pred ccCCHHHHHHHh-------------------------------------hc-CCHHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317 173 SDGGILTLVETV-------------------------------------ED-GSLVSTQHAVGALLSLCQSCRDKYRQLI 214 (314)
Q Consensus 173 ~~g~v~~Lv~ll-------------------------------------~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i 214 (314)
+.|+++.|+... .. ++++..-.++++|+||+..+. +..+.+
T Consensus 451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l-d~~~ll 529 (708)
T PF05804_consen 451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL-DWAQLL 529 (708)
T ss_pred hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc-CHHHHH
Confidence 566666554322 21 245677789999999987653 455666
Q ss_pred HHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCch--hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 215 LKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 215 ~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+.+.+|.|..++..+ .+.+...++..+..++..+.. .....|.++.++..+...++ +++.--+-.-++.+|..|
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcC
Confidence 6789999999988765 467888889999998876643 34467899988888875554 355556666667777766
No 11
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=1.2e-18 Score=171.93 Aligned_cols=228 Identities=22% Similarity=0.237 Sum_probs=198.1
Q ss_pred HHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCC-hhHHhhcCcHHHHHH
Q 021317 22 GYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APN-KPAIAASGAAPLLVQ 97 (314)
Q Consensus 22 ~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~-~~~i~~~g~l~~Lv~ 97 (314)
-.++.++..+|. ++.++..||..++ .-|+++.+|..|.+...++....+.+|+||++. |.| |..+.+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 467999999999 8889999999998 579999999999988888888889999999996 444 666678899999988
Q ss_pred H-hccCCHHHHHHHHHHHHHhc-CCCCCchhhhh-cCCcHHHHHHhhcc--CCchHHHHHHHHHHHHhcCC----hhhhh
Q 021317 98 I-LHSGSVQGRVDAVTALHYLS-TCKENSSPILD-ATAVPPLINLLKDC--KKYSKFAEKATALLEILSSS----EEGRI 168 (314)
Q Consensus 98 l-L~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~~~~~~a~~~L~~L~~~----~~~~~ 168 (314)
. |+...+......+.+||||+ .+.+||..|-. .|++..||.+|... ...-.+.+.+.++|.|++.. .+.|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 7 55667778889999999999 77899999998 79999999999764 23347889999999987655 44455
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
.+. ++.++..|+.+|++.+-.++.++|++||||+..++ +.++.+++.|+++.|..++++.+.++-+.++.+|.||-.+
T Consensus 525 ILR-~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p-~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 525 ILR-RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP-EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHH-HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH-HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 454 79999999999999999999999999999999886 6799999999999999999999999999999999999888
Q ss_pred Cch
Q 021317 249 PQE 251 (314)
Q Consensus 249 ~~~ 251 (314)
.+.
T Consensus 603 RPA 605 (2195)
T KOG2122|consen 603 RPA 605 (2195)
T ss_pred Cch
Confidence 754
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=6.8e-17 Score=153.35 Aligned_cols=282 Identities=20% Similarity=0.192 Sum_probs=214.6
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CCChhHHhhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---APNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~i~~~ 89 (314)
+.||.+.++.+|-.|..-+. ++.++.+-|..+.+.|+|+.||.+|++.+.+++.+|+.+|.||... ++||-.|.+.
T Consensus 239 i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 239 ISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 46778889999999988888 8889999999999999999999999999999999999999999984 4689999999
Q ss_pred CcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc--------CC----chHHHHHHHHH
Q 021317 90 GAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC--------KK----YSKFAEKATAL 156 (314)
Q Consensus 90 g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~----~~~~~~~a~~~ 156 (314)
++|+.++++|+. .|.++++...++|+||+.++..|..|+.. ++..|.+-.... .+ +..+..+++++
T Consensus 319 ~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgc 397 (717)
T KOG1048|consen 319 NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGC 397 (717)
T ss_pred CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhh
Confidence 999999999997 79999999999999999997777666653 344444433211 11 23556677777
Q ss_pred HHHhcC-ChhhhhHHHhccCCHHHHHHHhhc------CCHH---------------------------------------
Q 021317 157 LEILSS-SEEGRIAITNSDGGILTLVETVED------GSLV--------------------------------------- 190 (314)
Q Consensus 157 L~~L~~-~~~~~~~i~~~~g~v~~Lv~ll~~------~~~~--------------------------------------- 190 (314)
|.|++. ..+.|+++-...|.|+.|+..+++ .+.+
T Consensus 398 LRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~ 477 (717)
T KOG1048|consen 398 LRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGP 477 (717)
T ss_pred hccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCC
Confidence 777776 466777776666777777766641 1223
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhhccCc---HHH
Q 021317 191 ---------------------------------------------------------STQHAVGALLSLCQSCR---DKY 210 (314)
Q Consensus 191 ---------------------------------------------------------~~~~A~~~L~~L~~~~~---~~~ 210 (314)
+.|.++++|.||+.... ...
T Consensus 478 ~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~ 557 (717)
T KOG1048|consen 478 PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYM 557 (717)
T ss_pred cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHH
Confidence 44555555555554321 133
Q ss_pred HHHH-HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCC---CHHHHHHHHHHHHH
Q 021317 211 RQLI-LKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKRLLQ 285 (314)
Q Consensus 211 ~~~i-~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~---~~~~~~~~A~~~L~ 285 (314)
+..+ ..+.+.+.|+++++.+++.+...++.+|+||+.+... ..+.-++++.+|.-|--... -+++.-..+.-.|.
T Consensus 558 ~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ 637 (717)
T KOG1048|consen 558 RGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLN 637 (717)
T ss_pred HhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHH
Confidence 3344 4467899999999999999999999999999988754 56667788888877753222 23778889999999
Q ss_pred HHHHHHHHHhH
Q 021317 286 DMVQRSMELSM 296 (314)
Q Consensus 286 ~l~~~s~~~~~ 296 (314)
+++..+++.-.
T Consensus 638 niv~~~~~nAk 648 (717)
T KOG1048|consen 638 NIVRKNVLNAK 648 (717)
T ss_pred HHHHHhHHHHH
Confidence 99977766543
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=9.7e-16 Score=132.42 Aligned_cols=284 Identities=15% Similarity=0.187 Sum_probs=227.7
Q ss_pred cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcC--CCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcH
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKF--QNGTLRELAAAAILTLSA-AAPNKPAIAASGAA 92 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l 92 (314)
-++++...-.+++.+|. ++.+.|+ +.+..+...++.+|.. ++.++......++..-+. +..||..+.+.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 46778888899999988 6666555 4567778889999853 466777777777776444 67899999999999
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCch----------hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317 93 PLLVQILHS-GSVQGRVDAVTALHYLSTCKENSS----------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 93 ~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~----------~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 161 (314)
|.+...|.. +..++...++++++-|..+++.|. .|++.|++..|++.++.+-+ ++.....+.+|..|+
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID-PDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC-ccHHHHHHHHHHHHH
Confidence 999977655 455688899999999998887663 46668899999999998755 467778889999999
Q ss_pred CChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-c-CCHHHH
Q 021317 162 SSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-E-GTFEAQ 235 (314)
Q Consensus 162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~-~~~~~~ 235 (314)
..++.++.+. +.|+++.|++++.+.+ ..+...++..|+.|+.++ .++..+++.|+.+.++.++. + .+|.+-
T Consensus 271 Vr~E~C~~I~-e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 271 VRDEICKSIA-ESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HHHHHHHHHH-HccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence 9999999999 8999999999998733 345678899999999776 67999999999999999654 3 568888
Q ss_pred HHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHhhh
Q 021317 236 ERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELS-------MTRIQQRAAS 305 (314)
Q Consensus 236 ~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~-------~~~~~~~~~~ 305 (314)
+.++.++.-|+-..++ +.++.|+-+..|+.|-.+.. -...++.|..+++|++.||-+.+ .+.++.-|..
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~-~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV-AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 8999999888854432 67788888888888886553 25678999999999999987766 5667777777
Q ss_pred cCCC
Q 021317 306 SAPS 309 (314)
Q Consensus 306 ~~~~ 309 (314)
.||+
T Consensus 427 ~h~t 430 (461)
T KOG4199|consen 427 NHET 430 (461)
T ss_pred cCcc
Confidence 7775
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.1e-16 Score=136.45 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=212.9
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCC----------h
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPN----------K 83 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~----------~ 83 (314)
-++.++.++....+..+. -+..++.||..+.+.++.|.+.+.|... ...+.....++++-|..+|+. .
T Consensus 155 ~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA 234 (461)
T KOG4199|consen 155 ALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA 234 (461)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence 345567777888888888 7778999999999999999999888644 344555678899998887653 4
Q ss_pred hHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCch--HHHHHHHHHHHHh
Q 021317 84 PAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS--KFAEKATALLEIL 160 (314)
Q Consensus 84 ~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~--~~~~~a~~~L~~L 160 (314)
+.|+..|++..|++.+.-+ +|.+...++.+|..|+..++.++.|.+.|++..|+.++.+++..+ .+...++..|..|
T Consensus 235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 5667788999999999865 788999999999999999999999999999999999999865432 2556789999999
Q ss_pred cCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CHHHHH
Q 021317 161 SSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQE 236 (314)
Q Consensus 161 ~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~~ 236 (314)
+..++++..++ +.|+.+.++.++. ++++.+.+.++.++.-||-..| +....+++.|+-...++.++.. ...+|+
T Consensus 315 AG~DsvKs~IV-~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p-dhsa~~ie~G~a~~avqAmkahP~~a~vQr 392 (461)
T KOG4199|consen 315 AGSDSVKSTIV-EKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSP-DHSAKAIEAGAADLAVQAMKAHPVAAQVQR 392 (461)
T ss_pred hCCCchHHHHH-HhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCc-chHHHHHhcchHHHHHHHHHhCcHHHHHHH
Confidence 99999999999 7999999999884 4678999999999999999887 6788899999999999988875 367899
Q ss_pred HHHHHHHHhhcCCch--hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 237 RARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 237 ~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
+|++.++|+..++.+ +..-.-++|.++..-. ...+.....|+.+|+-|-
T Consensus 393 nac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~---~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 393 NACNMIRNIVVRSAENRTILLANGIEKLIRTAK---ANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHhhhhccchHHhccHHHHHHHHH---hcCccHHHHHHHHHHhcC
Confidence 999999999876643 3333334455544322 112344556667777665
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=2.5e-17 Score=162.77 Aligned_cols=264 Identities=19% Similarity=0.157 Sum_probs=211.7
Q ss_pred HHHH-HHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----C-------CHHHHHHHHHHHHHhccCC-CChhHHh-
Q 021317 23 YARR-LNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----Q-------NGTLRELAAAAILTLSAAA-PNKPAIA- 87 (314)
Q Consensus 23 ~~~~-~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~-------~~~~~~~a~~~L~~La~~~-~~~~~i~- 87 (314)
+.|. .|+..|.-.+-+++.|..|.+.|+++.+-+++.- + .-.+|..+..+|.||.+-+ .||..+.
T Consensus 312 ~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 3344 6677777777889999999999999999887721 1 2468999999999999976 5777776
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-h
Q 021317 88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-E 164 (314)
Q Consensus 88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~ 164 (314)
..|++..+|..|.+...++....+.+|+||++.. .|- +.+.+.|-+..|+..--....+ .-....+.+||||+.+ .
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE-STLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhccc
Confidence 6799999999999999999999999999999654 354 4455689999988876554333 3356899999999988 7
Q ss_pred hhhhHHHhccCCHHHHHHHhhc----CCHHHHHHHHHHHHHhhccC--cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 021317 165 EGRIAITNSDGGILTLVETVED----GSLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 238 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~----~~~~~~~~A~~~L~~L~~~~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A 238 (314)
+||..|..-.|++..|+.+|.- ....+.+.|-++|.|++..- .+.+|+.+.+.+++..|++.|++.+-.+..++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 8999998778999999999963 34678899999999987631 23789999999999999999999999999999
Q ss_pred HHHHHHhhcCCc---hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 239 RTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 239 ~~~L~~l~~~~~---~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+++||||.-.+. +-+.+.|++..+...+. .......+-++.+|+|+..+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh---SKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH---SKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh---hhhhhhhhhHHHHHHHHhcC
Confidence 999999975442 23456888887655554 33356778888899998854
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.73 E-value=5.1e-16 Score=134.01 Aligned_cols=198 Identities=20% Similarity=0.199 Sum_probs=175.1
Q ss_pred HhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 021317 46 ATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 124 (314)
Q Consensus 46 ~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 124 (314)
.+++-++.|+.+|+. .+|.+++.+..++.|.+.++.++..|.+.|+++.+..+|.++++.++..|+.+|.|++.+.+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 566778999999984 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
..|-. .++.+++.+.+...+..++..++++|.||+..++.+..+. +.++.++.+|.+|+..++..++.+|.||+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 98754 5888888777654455788899999999999888877775 379999999999999999999999999998
Q ss_pred cCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCc
Q 021317 205 SCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 205 ~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~ 250 (314)
.+ .+.+.+...+++..++.++... +.++-..+.....|+.++-.
T Consensus 164 np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 164 NP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred CH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 75 6688888889999999998875 67888899999999977664
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.69 E-value=4.8e-15 Score=128.00 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=162.1
Q ss_pred eccc-cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMET-YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~-~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
.+|+ +.||.+|+.++.++.+....+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+++..|.. .++
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~ 96 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIP 96 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHH
Confidence 3444 5689999999999998888999999999999999999999999999999999999999999999998853 688
Q ss_pred HHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317 94 LLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 171 (314)
Q Consensus 94 ~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 171 (314)
.+++.+.+. +..++..++++|.||+..++.+..+.. .++.++.+|.+|+. ..+..++.+|.||+.+++..+.++
T Consensus 97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~--~~k~~vLk~L~nLS~np~~~~~Ll 172 (254)
T PF04826_consen 97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE--KTKVQVLKVLVNLSENPDMTRELL 172 (254)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh--HHHHHHHHHHHHhccCHHHHHHHH
Confidence 888866554 678999999999999988877777654 79999999999866 778899999999999999988888
Q ss_pred hccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccC
Q 021317 172 NSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 172 ~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~ 206 (314)
..++++.++.++... +.++...++..+.|+..+-
T Consensus 173 -~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 173 -SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred -hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 688999999999775 5777889999999997653
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.58 E-value=1.7e-14 Score=137.23 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=164.6
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCCchh
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSP 126 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~~~ 126 (314)
+|..+.+|.+.++.++..|+.-+..+++.+ ..|..+.+-|+|+.|+.+|++++.+++.+|+++|+||... ++|+..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 678899999999999999999999999865 5688888999999999999999999999999999999954 358999
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-------C-------CHHHH
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-------G-------SLVST 192 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-------~-------~~~~~ 192 (314)
|.+.++++.++.+|+...+ .++++..+++||||++++..+..++. .+++.|-.-+-. + ...+-
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D-~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQD-DEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhcCChHHHHHHHHhhcc-hHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999997433 38899999999999999888888873 467766654421 1 14567
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317 193 QHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 193 ~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~ 247 (314)
.++.++|+|+++.. ++.|+.|.+ .|.|..|+.++++ .+....++|+-+|+||+-
T Consensus 392 ~n~tgcLRNlSs~~-~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAG-QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ehhhhhhccccchh-HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 89999999999876 488999998 8999999998873 467888999999999974
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.48 E-value=9.6e-12 Score=118.65 Aligned_cols=272 Identities=14% Similarity=0.092 Sum_probs=212.1
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
....|..+++.+|+.++..+. ...+++.....+.+.+.++.++.++.+++.++...|+.+|.+++.++.....+...+.
T Consensus 82 L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~ 161 (503)
T PF10508_consen 82 LQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL 161 (503)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch
Confidence 346788899999999999998 4555555456667899999999999999999999999999999999888888889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
++.|..++..++..+|...+.++.+++ .+++....+.+.|.++.++..+.+. +.-++.+++.+|..|+..+.+...+
T Consensus 162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHH
Confidence 999999999988899999999999998 5666777788899999999999884 3367889999999999999999999
Q ss_pred HhccCCHHHHHHHhhcCC--H---HHH-HHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 171 TNSDGGILTLVETVEDGS--L---VST-QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~--~---~~~-~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
. +.|+++.|..++.+.+ + .+. -..+...++++...+....... ...+..|.+++.+.|+..+..|..++..
T Consensus 240 ~-~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 240 E-QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred H-hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 8 6999999999997532 2 111 2233556777765432222111 3355566667778899999999999999
Q ss_pred hhcCCchh-hc--c-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 021317 245 LRDTPQEK-RL--S-SSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 245 l~~~~~~~-~~--~-~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~ 289 (314)
++...+++ .+ . ....+..+...... ..++.+.+-++-.+|.++..
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99777653 22 2 33555555555533 35556789999999999954
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.6e-12 Score=99.68 Aligned_cols=118 Identities=23% Similarity=0.345 Sum_probs=106.3
Q ss_pred hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 126 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
.+++.|+++.+++++.+++. .++..++.+|.+++.+ ++.+..+. +.|+++.++.+|.++++.++..|+++|++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDE--NVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCH--HHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 46788999999999998753 7889999999999998 77788887 68999999999999999999999999999998
Q ss_pred cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 205 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 205 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
..+ ..+..+.+.|+++.|++++.+.+..+++.|.++|.+|+.
T Consensus 79 ~~~-~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcH-HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 864 667888889999999999999999999999999999863
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=8.1e-13 Score=101.29 Aligned_cols=117 Identities=27% Similarity=0.405 Sum_probs=104.9
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
.+.+.|+++.++++|.++++.++..++.+|.+++.+ ++.+..+.+.|+++.+++++.+++ ..++..++++|+|++.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccC
Confidence 467889999999999999999999999999999976 788888999999999999999864 48899999999999998
Q ss_pred hhh-hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 164 EEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 164 ~~~-~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
.+. +..+. +.|+++.+++++.+.+..+++.++++|.+|+.
T Consensus 80 ~~~~~~~~~-~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVL-EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHH-HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 754 55555 78999999999999999999999999999973
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=5.3e-11 Score=113.60 Aligned_cols=264 Identities=16% Similarity=0.133 Sum_probs=195.6
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC-hhHHhhcCcHHH
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPL 94 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~g~l~~ 94 (314)
-+++.+.+....++..|..+......... ..+..+.|...|.++++.++..++..|.+++.+++. ...+.+.+.++.
T Consensus 46 ~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 46 CLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred HHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 35566667777777777733222222222 556778999999999999999999999999987765 444568999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhc
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNS 173 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~ 173 (314)
++.++.+++..+...|+.+|.+|+..+.....+.+.+.++.|..++...++ .++..+..++.+++...+. ...+. +
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~--~vR~Rv~el~v~i~~~S~~~~~~~~-~ 200 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD--IVRCRVYELLVEIASHSPEAAEAVV-N 200 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCHHHHHHHH-h
Confidence 999999999999999999999999988888888888889999999988544 5667788999999877554 55555 7
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CH---HHHHHHH-HHHHHhhc
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TF---EAQERAR-TLLDLLRD 247 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~---~~~~~A~-~~L~~l~~ 247 (314)
.|.++.++..+++++.-++.+|+.+|..|+..+ .+.+.+.+.|+++.|..++.+. +| ..--.+. ....+++.
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~--~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETP--HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 899999999999988999999999999999854 6689999999999999988764 33 1111222 34555555
Q ss_pred CCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 248 TPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 248 ~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
..+..... ..+++.+...+ ..++...+.-|-..+..+..
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~---~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSML---ESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHhC
Confidence 43222211 23333332222 23445667788888887764
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-11 Score=108.67 Aligned_cols=288 Identities=11% Similarity=0.075 Sum_probs=215.8
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-------CHHHHHHHHHHHHHhccC-CCChh
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSAA-APNKP 84 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~-~~~~~ 84 (314)
....+|++.++-++..++|. .+..+.++|..+.+.||-..++++|+.- +.+....+...|.|-... ++.+.
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~a 172 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRA 172 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 35567888999999999999 8889999999999999988888888532 234555667788886654 46678
Q ss_pred HHhhcCcHHHHHHHhccC----------------------------------------------CHHHHHHHHHHHHHhc
Q 021317 85 AIAASGAAPLLVQILHSG----------------------------------------------SVQGRVDAVTALHYLS 118 (314)
Q Consensus 85 ~i~~~g~l~~Lv~lL~~~----------------------------------------------~~~~~~~a~~~L~nLs 118 (314)
+..+.|+++.|...+.-+ .+...+-+..+|...+
T Consensus 173 q~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a 252 (604)
T KOG4500|consen 173 QVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA 252 (604)
T ss_pred HHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh
Confidence 888888888665443211 1233445556666777
Q ss_pred CCCCCchhhhhcCCcHHHHHHhhccC------------------------------------------------CchHHH
Q 021317 119 TCKENSSPILDATAVPPLINLLKDCK------------------------------------------------KYSKFA 150 (314)
Q Consensus 119 ~~~~~~~~i~~~g~i~~Lv~lL~~~~------------------------------------------------~~~~~~ 150 (314)
.++..+-.+++.|.++.+.++++.-. ++.+..
T Consensus 253 end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~ 332 (604)
T KOG4500|consen 253 ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLI 332 (604)
T ss_pred cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHH
Confidence 77777777777777777766664310 011223
Q ss_pred HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317 151 EKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 225 (314)
Q Consensus 151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ 225 (314)
..+.-++.|+++.++++..++ +.|.+..|+.++.. ++-..+..++.+|+|+.-..++ +..+..+|..+.++.
T Consensus 333 t~g~LaigNfaR~D~~ci~~v-~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n--ka~~~~aGvteaIL~ 409 (604)
T KOG4500|consen 333 TMGSLAIGNFARRDDICIQLV-QKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN--KAHFAPAGVTEAILL 409 (604)
T ss_pred HHHHHHHHhhhccchHHHHHH-HHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc--hhhccccchHHHHHH
Confidence 344556889999999999999 79999999999853 5678899999999999976544 899999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021317 226 LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADK--AAETAKRLLQDMVQRSMELSMTRIQQRA 303 (314)
Q Consensus 226 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~--~~~~A~~~L~~l~~~s~~~~~~~~~~~~ 303 (314)
.++..+|+++..-.++++.+..+.+.-..+.+--+.++..|..|..+.+- ..-+..++|..+.+|+-...+..++-+.
T Consensus 410 ~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpks 489 (604)
T KOG4500|consen 410 QLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKS 489 (604)
T ss_pred HHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcccc
Confidence 99999999999999999999887654344445555577777766655444 3577889999999998887777766554
Q ss_pred h
Q 021317 304 A 304 (314)
Q Consensus 304 ~ 304 (314)
+
T Consensus 490 g 490 (604)
T KOG4500|consen 490 G 490 (604)
T ss_pred c
Confidence 4
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.2e-11 Score=107.32 Aligned_cols=212 Identities=19% Similarity=0.180 Sum_probs=174.5
Q ss_pred HHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHH
Q 021317 28 NLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGR 107 (314)
Q Consensus 28 a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~ 107 (314)
|+--|.+.+++...-..+.....|..||..|+..+.++.......|..|+..++||..+.+.|.++.|+++....+++++
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~ 362 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR 362 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence 33334466677777778888899999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC
Q 021317 108 VDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG 187 (314)
Q Consensus 108 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~ 187 (314)
...+..|.||+.+..++..++..|.+|.|+.++.+... ..-|+..+.+++.+++.+..+. ...+|+.+...+-++
T Consensus 363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD~~K~Mfa-yTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----HGIALNMLYHLSCDDDAKAMFA-YTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc----chhhhhhhhhhccCcHHHHHHH-HHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988543 2458899999999999998888 689999999987665
Q ss_pred CHHHHHHHHHHH-HHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 188 SLVSTQHAVGAL-LSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 188 ~~~~~~~A~~~L-~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
...-...++.+| .|||...+ +.+.+.+.+++..|++ .++..++.. ...++|++.|..
T Consensus 438 ~~~~vdl~lia~ciNl~lnkR--NaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg 496 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCLNKR--NAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEG 496 (791)
T ss_pred CCceecHHHHHHHHHHHhccc--cceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccc
Confidence 433233344444 68887764 3778888889999987 455555443 357888887764
No 25
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=1.3e-10 Score=102.52 Aligned_cols=191 Identities=15% Similarity=0.027 Sum_probs=143.4
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
...|.+++..++..++.+|.... ...+++.+..++.++++.+|..|+.+|+.|...+.. ....++
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~ 93 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFN 93 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHH
Confidence 46678888888998888886332 244567788888999999999999999998653321 234678
Q ss_pred HHHHH-hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 94 LLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 94 ~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
.|..+ ++++++.++..|+.+|+++....... ...+++.+...+.+.+ ..++..+..+|..+.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~--~~VR~~a~~aLg~~~----------- 156 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKS--TNVRFAVAFALSVIN----------- 156 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCC--HHHHHHHHHHHhccC-----------
Confidence 88877 67889999999999999986443211 1224455556666653 378888888885432
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
...+++.|+.++.+.+..++..|+.+|..+...++ .+++.|+..+.+.++.++..|++.|..+.
T Consensus 157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~----------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP----------DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH----------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 24478899999999999999999999999854433 26788899999999999999999998764
No 26
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.26 E-value=2.6e-10 Score=102.65 Aligned_cols=217 Identities=18% Similarity=0.144 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHHHHHh------cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKVKIAT------AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 92 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~------~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l 92 (314)
+++++.++.+.-+. ++..++.....+.+ .....++++++.+++.-+...|+..|..|......+..-...+.+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 67888899988888 77777777666665 235788899999999999999999999988876555544446778
Q ss_pred HHHHHHhcc----CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh-----hccCCchHHHHHHHHHHHHhcCC
Q 021317 93 PLLVQILHS----GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-----KDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 93 ~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
+.+++.+.+ ++.+.+..++.+|.+|...++.|..+.+.|+++.+.+++ .++....++.-.++-++|.|+-+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~ 228 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE 228 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC
Confidence 888888875 345667999999999999999999999999999999999 34444557888999999999999
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHH
Q 021317 164 EEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQER 237 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~ 237 (314)
++....+. +.+.|+.|+.+++.. .+++.+.++.+|.|+....++.+...|+..|+++.+-.+... +|+++.+-
T Consensus 229 ~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 229 PEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99999998 677999999999864 589999999999999987754478888888876666665543 46666653
No 27
>PRK09687 putative lyase; Provisional
Probab=99.22 E-value=7e-10 Score=97.87 Aligned_cols=208 Identities=17% Similarity=0.004 Sum_probs=150.5
Q ss_pred CchhHHHHHh----cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHH
Q 021317 38 KTRNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA 113 (314)
Q Consensus 38 ~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~ 113 (314)
..+++....- .-.++.|+++|.+++..++..++.+|..+ .....++.+..++.++++.+|..++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~----------~~~~~~~~l~~ll~~~d~~vR~~A~~a 77 (280)
T PRK09687 8 RKASKEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLR----------GGQDVFRLAIELCSSKNPIERDIGADI 77 (280)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhc----------CcchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445544432 33478999999999999999999999887 356778899999999999999999999
Q ss_pred HHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHH
Q 021317 114 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ 193 (314)
Q Consensus 114 L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~ 193 (314)
|..|-..+.. ...+++.|..++... ++..++..|..+|.+++...... ...+++.+...+.+.+..+|.
T Consensus 78 Lg~lg~~~~~-----~~~a~~~L~~l~~~D-~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 78 LSQLGMAKRC-----QDNVFNILNNLALED-KSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHhcCCCccc-----hHHHHHHHHHHHhcC-CCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHH
Confidence 9998754322 234667777774442 34488889999999886543221 122456777888888999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCH
Q 021317 194 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA 273 (314)
Q Consensus 194 ~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~ 273 (314)
.++.+|..+.. + .+++.|+.++.+.++.++..|+.+|..+..+. ..+++.|+..|. +.+
T Consensus 147 ~a~~aLg~~~~--~----------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------~~~~~~L~~~L~---D~~ 205 (280)
T PRK09687 147 AVAFALSVIND--E----------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------PDIREAFVAMLQ---DKN 205 (280)
T ss_pred HHHHHHhccCC--H----------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------HHHHHHHHHHhc---CCC
Confidence 99999977652 2 27899999999999999999999999883222 234444444442 445
Q ss_pred HHHHHHHHHHHHHH
Q 021317 274 DKAAETAKRLLQDM 287 (314)
Q Consensus 274 ~~~~~~A~~~L~~l 287 (314)
+.++..|...|.++
T Consensus 206 ~~VR~~A~~aLg~~ 219 (280)
T PRK09687 206 EEIRIEAIIGLALR 219 (280)
T ss_pred hHHHHHHHHHHHcc
Confidence 66666666666543
No 28
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-09 Score=98.12 Aligned_cols=267 Identities=11% Similarity=0.053 Sum_probs=192.3
Q ss_pred cCCHHHHHHHHHHhHhhccCchhHHHH----HhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHH
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRNKVKI----ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAP 93 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~~~~l----~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~ 93 (314)
..+..+......++.-.+.++.-|..+ +.++.+++|.+...+++.++.++..++|+|++++ +++|..+.+.||-.
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 334455555666666333555555444 4567788888888898999999999999999995 68999999999988
Q ss_pred HHHHHhccC-------CHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCc-------------------
Q 021317 94 LLVQILHSG-------SVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKY------------------- 146 (314)
Q Consensus 94 ~Lv~lL~~~-------~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------------------- 146 (314)
-++++|+.. +.+....+++.|.|-. .+++.+.++.+.|+++.|...+.-+..+
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 888877642 3467788889999988 5667888899999999877766432221
Q ss_pred -------------------------hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCH-------HHHH
Q 021317 147 -------------------------SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSL-------VSTQ 193 (314)
Q Consensus 147 -------------------------~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~-------~~~~ 193 (314)
+++.+.+..+++..+.++..+-.++ ++|.+..++.+++. ... ..-.
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la-~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLA-QNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehh-hcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 1233455666777777777777787 68888888888865 111 1112
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHcC-ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcchhhhHHHHHHHhh--
Q 021317 194 HAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAA-- 268 (314)
Q Consensus 194 ~A~~~L~~L~~~~~~~~~~~i~~~g-~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~lv~~l~~-- 268 (314)
.++....-|..++ +..+.+...+ .++.++..+++.+...+..++-++.|+++.... .+++.+++++++..|..
T Consensus 292 ~~~el~vllltGD--eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 292 RIAELDVLLLTGD--ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhhHhhhhhcCc--hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333333333333 3355566544 888899999999999999999999999976642 57788999999888774
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 021317 269 RVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 269 ~~~~~~~~~~~A~~~L~~l~ 288 (314)
..+|+-+.+..+.++|+|++
T Consensus 370 ~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLM 389 (604)
T ss_pred CCCccchhHHHHHHHHHhcc
Confidence 24677778899999999998
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.3e-09 Score=96.38 Aligned_cols=281 Identities=14% Similarity=0.109 Sum_probs=188.5
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 95 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L 95 (314)
-|.-.+.........-|.-.+...+|+..+.+.|.|+.|+.+....+++++...+..|.|++.+...+..++..|.+|.+
T Consensus 312 aLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l 391 (791)
T KOG1222|consen 312 ALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHL 391 (791)
T ss_pred HHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHH
Confidence 34444544444455555566678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH----
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT---- 171 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~---- 171 (314)
..+|.+... ...|...|..++-+++.+..+....+++.+++.+-++... ++-....+..-|||.+..|.+.++
T Consensus 392 ~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~-~vdl~lia~ciNl~lnkRNaQlvceGqg 468 (791)
T KOG1222|consen 392 ASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGS-EVDLALIALCINLCLNKRNAQLVCEGQG 468 (791)
T ss_pred HHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCc-eecHHHHHHHHHHHhccccceEEecCcc
Confidence 999987653 4568889999999999999999999999999888765432 332222233335555444433222
Q ss_pred ------------------------hccC--------CHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC
Q 021317 172 ------------------------NSDG--------GILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218 (314)
Q Consensus 172 ------------------------~~~g--------~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g 218 (314)
++.| .|..|.+.++. .+....-.++++|+||.-.+- +....+.+.+
T Consensus 469 L~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl-dw~~ilq~~~ 547 (791)
T KOG1222|consen 469 LDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL-DWAKILQSEN 547 (791)
T ss_pred hHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC-CHHHHHhhcc
Confidence 0111 34445555543 335567789999999987543 5566777799
Q ss_pred ChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCchh--hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQEK--RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 294 (314)
Q Consensus 219 ~v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~~--~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~ 294 (314)
.+|++-..+..+ .+..+-.-+-.+.-++...... .-.++.++.++..|.+.+.. +.--.+-.-....+.+| |.
T Consensus 548 LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeD-DEfV~QiiyVF~Q~l~H--e~ 624 (791)
T KOG1222|consen 548 LVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQED-DEFVVQIIYVFLQFLKH--EL 624 (791)
T ss_pred ccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhccc-chHHHHHHHHHHHHHHH--HH
Confidence 999999877654 2344444444455554433322 23467888888877754432 33233333334445555 44
Q ss_pred hHHHHHHHh
Q 021317 295 SMTRIQQRA 303 (314)
Q Consensus 295 ~~~~~~~~~ 303 (314)
..+..+++-
T Consensus 625 tr~~miket 633 (791)
T KOG1222|consen 625 TRRLMIKET 633 (791)
T ss_pred HHHHHHhhc
Confidence 444444443
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-09 Score=95.60 Aligned_cols=189 Identities=23% Similarity=0.219 Sum_probs=160.8
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLL 95 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~L 95 (314)
.++.+++.++.|+.-|....++-+|...++..|+..+++..+.+.+..+|+.|+++++..+.+ +..+..+.+.|+++.|
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 356678999999999996667889999999999999999999999999999999999999886 5788899999999999
Q ss_pred HHHhccC-CHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 96 VQILHSG-SVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 96 v~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
+..|.+. +..++..|+.++.+|- ..+.....+...++...|.+.+++++...+++..++..+..|.........++..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999876 4577899999999999 4567888888888899999999997777788899999999987765444445546
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
.|....+..+..+.+..+.+.++.++..+...
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 67777777788888888999999888777654
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.09 E-value=6.8e-09 Score=93.42 Aligned_cols=228 Identities=17% Similarity=0.132 Sum_probs=156.6
Q ss_pred CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCChhH-Hhh------cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317 50 AIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPA-IAA------SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 50 ~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~-i~~------~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 120 (314)
....++.+|.. .++++....+..+..|..++..+.. +.. .....++++++.++|..+...|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 36677777753 5788999999999998876654444 333 13678999999999999999999999999966
Q ss_pred CCCchhhhhcCCcHHHHHHhhccCC--chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh-----hc--CCHHH
Q 021317 121 KENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-----ED--GSLVS 191 (314)
Q Consensus 121 ~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll-----~~--~~~~~ 191 (314)
.+.+..-...+.++.+++.+.+... +..+...++.+|.+|...++.|..+. +.|+++.+..++ .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhH
Confidence 6555544446677888888876221 22456789999999999999999999 699999999999 22 23667
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHh
Q 021317 192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIA 267 (314)
Q Consensus 192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~ 267 (314)
+-.++.++|.|++.. +..+.+...+.++.|+++++.. ...+.+-+.+++.||...... ..+-.+.+.+++..|.
T Consensus 215 ~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 215 QYQALLCLWLLSFEP--EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHTTSH--HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH--HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 899999999999885 6788899988999999988875 588899999999999877753 2222333344656666
Q ss_pred hcCCCHHHHHHHH
Q 021317 268 ARVDGADKAAETA 280 (314)
Q Consensus 268 ~~~~~~~~~~~~A 280 (314)
...=++++..+.-
T Consensus 293 ~rk~~Dedl~edl 305 (312)
T PF03224_consen 293 ERKWSDEDLTEDL 305 (312)
T ss_dssp SS--SSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 4433345554443
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.99 E-value=6.1e-08 Score=98.95 Aligned_cols=222 Identities=16% Similarity=0.078 Sum_probs=127.5
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
+..|.++++.+|+.|+.+|.-.. ..+.++.|+..|.+++++++..|+.+|..+.... ...+
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---------~~~~ 687 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---------PPAP 687 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---------CchH
Confidence 46678889999999998886321 2456788889998889999998888888774321 1124
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCC-----------C--Cchh----hhhcCCcHHHHHHhhccCCchHHHHHHHHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCK-----------E--NSSP----ILDATAVPPLINLLKDCKKYSKFAEKATAL 156 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-----------~--~~~~----i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~ 156 (314)
.|...|.++++.+|..++.+|..+...+ + .|.. +...+..+.|..++.+.+. .++..+..+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~--~VR~~aa~a 765 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR--EVRIAVAKG 765 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH--HHHHHHHHH
Confidence 4555566666666666666555543110 0 0000 0001122334444444322 444444444
Q ss_pred HHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 021317 157 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQE 236 (314)
Q Consensus 157 L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~ 236 (314)
|..+... ....++.|..++++.++.+|..|+.+|..+.... . .++.|+..+.+.++.++.
T Consensus 766 L~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~----------~~~~l~~aL~d~d~~VR~ 825 (897)
T PRK13800 766 LATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP-D----------DVAAATAALRASAWQVRQ 825 (897)
T ss_pred HHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-h----------hHHHHHHHhcCCChHHHH
Confidence 4443221 1223567777777777788888888777765321 1 234466666667777777
Q ss_pred HHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317 237 RARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 287 (314)
Q Consensus 237 ~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l 287 (314)
.|+.+|..+.. ...++.|+..|. |.+..++..|..+|..+
T Consensus 826 ~Aa~aL~~l~~--------~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 826 GAARALAGAAA--------DVAVPALVEALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhccc--------cchHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 77777766532 112244444443 55566777777777665
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.9e-08 Score=86.92 Aligned_cols=185 Identities=18% Similarity=0.139 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHh
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLL 140 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL 140 (314)
+.+-++.|..-|..+..+-+|..-+...||..+++..+++++..+|..|+++|...+ .++..+..+.+.|+++.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567788888888888888899999999999999999999999999999999999999 5567888999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317 141 KDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED--GSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217 (314)
Q Consensus 141 ~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~ 217 (314)
.+..+. .++.+|+.+++++-++ ......+. ..++...|...+.+ .+...+..++..+..|..... ..+..+...
T Consensus 176 s~~~~~-~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 176 SSDDPN-TVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred ccCCCc-hHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 975544 6778999999999887 56677777 57789999999988 568889999999999987764 334555557
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHH-HHHhhcCC
Q 021317 218 GAIPGLLRLTVEGTFEAQERARTL-LDLLRDTP 249 (314)
Q Consensus 218 g~v~~Lv~ll~~~~~~~~~~A~~~-L~~l~~~~ 249 (314)
+....+..+....+.++.+.+... +..+....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 777777778888899999999964 44444443
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.96 E-value=1e-07 Score=97.40 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=139.1
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-----------CC
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-----------PN 82 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-----------~~ 82 (314)
+..|+++++.++..|+.+|....... ...+.|...|+++++.+|..|+.+|..+...+ +.
T Consensus 658 ~~aL~D~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~ 728 (897)
T PRK13800 658 VAALGDGAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH 728 (897)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH
Confidence 46678888999998888886221100 01234555555555555555555555442100 00
Q ss_pred --h----hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHH
Q 021317 83 --K----PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL 156 (314)
Q Consensus 83 --~----~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~ 156 (314)
| ..+.+-+..+.|..++.++++.+|..++.+|..+.... ...++.|..++++.+ +.++..|+..
T Consensus 729 ~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d--~~VR~aA~~a 798 (897)
T PRK13800 729 RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPD--PLVRAAALAA 798 (897)
T ss_pred HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCC--HHHHHHHHHH
Confidence 0 00000112234455555666666666666665554321 124688889888864 4888888888
Q ss_pred HHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 021317 157 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQE 236 (314)
Q Consensus 157 L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~ 236 (314)
|..+... ...++.++..+.+.+..+|..|+.+|..+... + .++.|+.++.+.+..+|.
T Consensus 799 Lg~~g~~----------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--~----------a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 799 LAELGCP----------PDDVAAATAALRASAWQVRQGAARALAGAAAD--V----------AVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHhcCCc----------chhHHHHHHHhcCCChHHHHHHHHHHHhcccc--c----------hHHHHHHHhcCCCHHHHH
Confidence 8776431 12335688889998999999999999887532 1 569999999999999999
Q ss_pred HHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317 237 RARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD 286 (314)
Q Consensus 237 ~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~ 286 (314)
.|+.+|..+... ....+.+...+. +.+...+..|..+|..
T Consensus 857 ~A~~aL~~~~~~-------~~a~~~L~~al~---D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 857 AAVLALTRWPGD-------PAARDALTTALT---DSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHhccCCC-------HHHHHHHHHHHh---CCCHHHHHHHHHHHhh
Confidence 999999886211 224444544443 6678889999988853
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.94 E-value=9.8e-08 Score=88.08 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 98 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l 98 (314)
+...+..++.++...-..++.|..+.+.++++.|+++|+.. +.+.+-.++-+++-|+.+++......+.+.++.++++
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i 236 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDI 236 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHH
Confidence 46678888888885556789999999989999999999753 4578889999999999998877777788999999999
Q ss_pred hccC-CHHHHHHHHHHHHHhcCCCC-------CchhhhhcCCcHHHHHHhhccCCchHHHHHH-------HHHHHHhcCC
Q 021317 99 LHSG-SVQGRVDAVTALHYLSTCKE-------NSSPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILSSS 163 (314)
Q Consensus 99 L~~~-~~~~~~~a~~~L~nLs~~~~-------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-------~~~L~~L~~~ 163 (314)
++.. .+.+..-++.+|+||...+. ....+++.|.++.+-.+....-.++++.+.- -.-+..+++.
T Consensus 237 ~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf 316 (429)
T cd00256 237 LKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF 316 (429)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9875 57788999999999997431 2344556666554444444433344443211 1112233333
Q ss_pred hh------------------------hhhHHHhcc-CCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317 164 EE------------------------GRIAITNSD-GGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKE 217 (314)
Q Consensus 164 ~~------------------------~~~~i~~~~-g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~ 217 (314)
++ |-..+-++. ..+..|+.+|. +.++.+...||.=++.++.+.| ..|..+.+-
T Consensus 317 D~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P-~gr~i~~~l 395 (429)
T cd00256 317 DEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP-RGKDVVEQL 395 (429)
T ss_pred HHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc-cHHHHHHHc
Confidence 22 233343222 22578889985 4567777889999999999876 667777778
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 218 GAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 218 g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
|+=..+++++.+.+++++..|..++..+-
T Consensus 396 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 396 GGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 98888999999999999999999998874
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.92 E-value=1.2e-07 Score=87.48 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=181.5
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAA 92 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l 92 (314)
.+|..+|.-++..+...+. +++.+..+.......-.++.|...|+++ +...+..++.+|..|...++.|..+.+.+++
T Consensus 108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v 187 (429)
T cd00256 108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGV 187 (429)
T ss_pred HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCH
Confidence 4677888899999999988 6554443322111111234455666654 4667778889999999999999999989999
Q ss_pred HHHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh------
Q 021317 93 PLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE------ 164 (314)
Q Consensus 93 ~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~------ 164 (314)
++|+.+|+.. +...+-+++.+++-|+.+++......+.+.++.|+++++.... +++.+-+++++.|+....
T Consensus 188 ~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~K-EKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 188 PTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTK-EKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhhcccccchh
Confidence 9999999764 4578899999999999998866667778999999999998654 488899999999998753
Q ss_pred -hhhhHHHhccCCHHHHHHHhhc---CCHHHHHH-------HHHHHHHhhccC-------------------c---HHHH
Q 021317 165 -EGRIAITNSDGGILTLVETVED---GSLVSTQH-------AVGALLSLCQSC-------------------R---DKYR 211 (314)
Q Consensus 165 -~~~~~i~~~~g~v~~Lv~ll~~---~~~~~~~~-------A~~~L~~L~~~~-------------------~---~~~~ 211 (314)
.....++ +.|.. .++..|.. .++++.+. --..+..++..+ + .++.
T Consensus 267 ~~~~~~mv-~~~l~-~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~ 344 (429)
T cd00256 267 KTAALQMV-QCKVL-KTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA 344 (429)
T ss_pred hhHHHHHH-HcChH-HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence 2234555 45554 45555543 23333221 111112222110 0 0334
Q ss_pred HHHHHcC--ChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCC-chh-hc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317 212 QLILKEG--AIPGLLRLTV-EGTFEAQERARTLLDLLRDTP-QEK-RL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQ 285 (314)
Q Consensus 212 ~~i~~~g--~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~-~~~-~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~ 285 (314)
..+.+.+ .++.|++++. +.++.+..-|+-=++.+.++. .++ .+ +.|+-+.+...|. +.+++.+.+|-.+++
T Consensus 345 ~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~---h~d~~Vr~eAL~avQ 421 (429)
T cd00256 345 DRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN---HEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 4444433 5788889885 456777777777778877654 333 22 4666665544443 456899999999999
Q ss_pred HHHHH
Q 021317 286 DMVQR 290 (314)
Q Consensus 286 ~l~~~ 290 (314)
.+.-+
T Consensus 422 klm~~ 426 (429)
T cd00256 422 KLMVH 426 (429)
T ss_pred HHHHh
Confidence 88754
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.91 E-value=3.3e-08 Score=92.92 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=149.1
Q ss_pred CchhHHHHHhcCCcHHHHHHhc------CCCHHHHHHHHHHHHHhccC-----CCChhHHhhcCcHHHHHHHhccCCHHH
Q 021317 38 KTRNKVKIATAGAIPPLVELLK------FQNGTLRELAAAAILTLSAA-----APNKPAIAASGAAPLLVQILHSGSVQG 106 (314)
Q Consensus 38 ~~~~~~~l~~~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~La~~-----~~~~~~i~~~g~l~~Lv~lL~~~~~~~ 106 (314)
-+.+.....+....+.+++++. +..+..+.-++.-...+... -.++..+.+--....+..+....|...
T Consensus 314 ~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~ 393 (678)
T KOG1293|consen 314 ASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDF 393 (678)
T ss_pred HHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHH
Confidence 3445556667777777777773 23444444333322222221 133444443333333333334457788
Q ss_pred HHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHh
Q 021317 107 RVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETV 184 (314)
Q Consensus 107 ~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll 184 (314)
+..|+.++.+++.+ ...+..+-+..++.+|++++.++.. .+...++++|+|+... .+.|..+. ..|+|+.+..++
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s~~ 470 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHHHh
Confidence 88888888888854 3344445557799999999977644 7788899999999877 56688888 799999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 185 EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 185 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
.+.+..++..++|+|+++..+..++.+.+....=...-++.+..+.+..+|+.|..+|+||.....
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 999999999999999999998865545555554456667889999999999999999999987753
No 38
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.89 E-value=1.4e-08 Score=77.35 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=125.0
Q ss_pred cCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317 89 SGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 167 (314)
Q Consensus 89 ~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 167 (314)
-+.+..|+.-... .+.+.++....-|.|.+.++-|-..+.+..+++..++.|...+. .+++.+.+.|+|+|.++.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--LLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--HHHHHhHHHHHhhccChHHH
Confidence 3456677766654 58899999999999999999999999999999999999998654 88999999999999999999
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
+.|. +.+++|.++..+.+....+...|+.++..|+..+. ..|+.+....++..+.++-.+.+...+.-|...|..
T Consensus 93 ~~I~-ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-t~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIR-EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-TERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHH-HhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-chhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999 89999999999999999999999999999998876 557777776666666666544444444444444443
No 39
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-07 Score=91.28 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=173.7
Q ss_pred cccC-CHHHHHHHHHHhH--hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhcc-CCCChhHHhhcCc
Q 021317 17 ETYF-EGYARRLNLMGPL--WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSA-AAPNKPAIAASGA 91 (314)
Q Consensus 17 l~~~-~~~~~~~a~~al~--l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~ 91 (314)
|... |+..|..++..+. +...+++.-.-+--..++|.|+.+|+++ +.++...|+++|.+|.. .+.....+++.++
T Consensus 176 L~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~a 255 (1051)
T KOG0168|consen 176 LQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHA 255 (1051)
T ss_pred ccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccc
Confidence 4444 8999999999988 6667777776655667899999999876 79999999999999998 5788888999999
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhh
Q 021317 92 APLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRI 168 (314)
Q Consensus 92 l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~ 168 (314)
||.|+.-|- -.-.++-++++.+|..++..+ -..+.++|++-..+..+.--+. .++..|+++..|+|.. .+.-.
T Consensus 256 IPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi--~aQR~AlaiaaN~Cksi~sd~f~ 331 (1051)
T KOG0168|consen 256 IPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSI--HAQRVALAIAANCCKSIRSDEFH 331 (1051)
T ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCccch
Confidence 999887654 456788999999999999664 3578899999999998876544 5678899999999877 44555
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC--cHHHHHHHHHcCChHHHHHhhhcCC----HHHHHHHHHHH
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLTVEGT----FEAQERARTLL 242 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~--~~~~~~~i~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L 242 (314)
.++. ++|.|-.+|...+.+..+.++.++.-++..- ..+--+.+...|.+....+++.-.. ..+...-++.|
T Consensus 332 ~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 332 FVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred HHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 5553 8999999999988888999999998876421 1245567777888888888765432 12222333455
Q ss_pred HHhhcCC
Q 021317 243 DLLRDTP 249 (314)
Q Consensus 243 ~~l~~~~ 249 (314)
..++.++
T Consensus 409 s~msS~~ 415 (1051)
T KOG0168|consen 409 SLMSSGS 415 (1051)
T ss_pred HHHccCC
Confidence 5555543
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.74 E-value=6.7e-07 Score=86.29 Aligned_cols=254 Identities=19% Similarity=0.166 Sum_probs=162.0
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
+.++|+.++..|++++.... +++.... .++.+.+++.++++.+|..|+.++..+...+.. .+... .++.+.
T Consensus 88 l~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~ 158 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLK 158 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHH
T ss_pred hcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHh
Confidence 56778888888888887544 2333222 357788889999999999999999998764221 22222 688999
Q ss_pred HHhccCCHHHHHHHHHHHHHh-cCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 97 QILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 97 ~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
++|.+.++.++..|+.++..+ ...+... .+. ...+..|.+++...++ -.+...+.++..++........- ..
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l~~~~~--~~q~~il~~l~~~~~~~~~~~~~---~~ 231 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLLSDPDP--WLQIKILRLLRRYAPMEPEDADK---NR 231 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHHTCCSH--HHHHHHHHHHTTSTSSSHHHHHH---HH
T ss_pred hhccCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcccccch--HHHHHHHHHHHhcccCChhhhhH---HH
Confidence 999999999999999999998 1111101 111 1233444444444444 34556777777766653332210 33
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS 255 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 255 (314)
.++.+..++.+.++.+.-.|+.++..+.... . .-..+++.|+.++.+.++.++..+...|..++........
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~- 303 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF- 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhcch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-
Confidence 6668888888878888888888888877543 2 2234788899999888888999999999888776532222
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021317 256 SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQ 301 (314)
Q Consensus 256 ~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~ 301 (314)
.....+..+. .+.+...+..|..+|..+.. +.|...++.
T Consensus 304 --~~~~~~~~l~--~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~ 342 (526)
T PF01602_consen 304 --NQSLILFFLL--YDDDPSIRKKALDLLYKLAN---ESNVKEILD 342 (526)
T ss_dssp --THHHHHHHHH--CSSSHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred --hhhhhhheec--CCCChhHHHHHHHHHhhccc---ccchhhHHH
Confidence 1111111222 34456778888888888874 344444443
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.73 E-value=4.9e-07 Score=85.24 Aligned_cols=254 Identities=17% Similarity=0.214 Sum_probs=167.8
Q ss_pred HhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH---HhccCCC-Chh----HHhhcCcHH--HHHHHhccC
Q 021317 33 LWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL---TLSAAAP-NKP----AIAASGAAP--LLVQILHSG 102 (314)
Q Consensus 33 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~---~La~~~~-~~~----~i~~~g~l~--~Lv~lL~~~ 102 (314)
..++..++++..+...|+.+.+.-++...+...|..|...+. ++..+++ ... ...+.|..+ ...+++.++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 367777788888889999998888888778888998888888 6666543 222 223456666 456677777
Q ss_pred CHHHHHHHHHHHHHhcCCC-------------CC---------------------------------------chhhhhc
Q 021317 103 SVQGRVDAVTALHYLSTCK-------------EN---------------------------------------SSPILDA 130 (314)
Q Consensus 103 ~~~~~~~a~~~L~nLs~~~-------------~~---------------------------------------~~~i~~~ 130 (314)
+...+..++.+|.++.... ++ +....+.
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 7666666666666554211 01 0000111
Q ss_pred CCcHHHHHHhhccC--------------------------------------------------CchHHHHHHHHHHHHh
Q 021317 131 TAVPPLINLLKDCK--------------------------------------------------KYSKFAEKATALLEIL 160 (314)
Q Consensus 131 g~i~~Lv~lL~~~~--------------------------------------------------~~~~~~~~a~~~L~~L 160 (314)
..++.+++++..+. .+...+.+|+-++.++
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 12222222221100 0011223333334444
Q ss_pred cCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317 161 SSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR 239 (314)
Q Consensus 161 ~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~ 239 (314)
+..- .-+... ....+.+.|++++.+++..+...++++++|+...-. ..+..+.+.|+|+.|..++.+.++.++..+.
T Consensus 405 srsV~aL~tg~-~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~ 482 (678)
T KOG1293|consen 405 SRSVSALRTGL-KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSL 482 (678)
T ss_pred HHHHHHHHcCC-ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHH
Confidence 4432 223332 356788899999999999999999999999987654 6799999999999999999999999999999
Q ss_pred HHHHHhhcCCchhh---cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 240 TLLDLLRDTPQEKR---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 240 ~~L~~l~~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
|+|+++.-...++. ....+-...+..+. .|.+..++|.+-++|+||+-.
T Consensus 483 ~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~--nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 483 WVLRHLMFNCDEEEKFQLLAKIPANLILDLI--NDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhHHHHHHHH--hCCCHHHHHHHHHHHHHhhcC
Confidence 99999987775422 22233333444444 566788999999999999943
No 42
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.70 E-value=1e-07 Score=72.64 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=105.8
Q ss_pred cHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 51 IPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 51 v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
+..|+.-.. ..+.+.+++...-|.|.+.++.|-..+.+..++..++..|..+++.+++.+++.|+|+|.++.|++.|++
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 445555443 4588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHH
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTL 180 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~L 180 (314)
++++|.++..++++.. .....++..+..|+-.. ..+..+. ..-.+..+
T Consensus 98 a~g~plii~~lssp~e--~tv~sa~~~l~~l~~~~Rt~r~ell-~p~Vv~~v 146 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPE--ITVHSAALFLQLLEFGERTERDELL-SPAVVRTV 146 (173)
T ss_pred hcCCceEEeecCCChH--HHHHHHHHHHHHhcCcccchhHHhc-cHHHHHHH
Confidence 9999999999988644 56677888888888764 4566665 34333333
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1e-06 Score=85.09 Aligned_cols=192 Identities=21% Similarity=0.249 Sum_probs=149.4
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHH-hcc-CCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhc-CCCCCchh
Q 021317 52 PPLVELLKFQ-NGTLRELAAAAILT-LSA-AAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLS-TCKENSSP 126 (314)
Q Consensus 52 ~~Lv~lL~~~-~~~~~~~a~~~L~~-La~-~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~ 126 (314)
..|++=|+.. ++..+..|+.-|+. |+. +++.-..+--.-.+|.|+.+|+.. +.++.-.|+++|.+|+ ..|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3444444444 67777777777776 333 344444444567899999999876 7899999999999999 67889999
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
++++++||.|+.-|..-. .-++.+.++.+|..+++.+ -..+. ++|++...+.+|.=-+..+|+.|+.+-.|+|..-
T Consensus 250 vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE~iSR~H--~~AiL-~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIE-YIDVAEQSLQALEKISRRH--PKAIL-QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eecccchHHHHHhhhhhh-hhHHHHHHHHHHHHHHhhc--cHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999887632 3488899999999888743 34556 6999999999997667889999999999999865
Q ss_pred cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+.+-=..+++ ++|.|..++...+...-+.++-++..+++.-
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 4333445554 7999999999999999999888888887533
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.62 E-value=1.6e-06 Score=83.64 Aligned_cols=250 Identities=17% Similarity=0.158 Sum_probs=179.6
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 92 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l 92 (314)
+.++.+.+...++-+-.++. ....+++. ..+ ++..+.+=|.++++.++..|++++.++.. ..+. .-.+
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~~~~-~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~~~-~~l~ 116 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHEDPEL-LIL----IINSLQKDLNSPNPYIRGLALRTLSNIRT-----PEMA-EPLI 116 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTSHHH-HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HHHH-HHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcchhH-HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cchh-hHHH
Confidence 35567889999999888888 55555552 222 34567777889999999999999999872 1222 3367
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
+.+.+++.++++.+|..|+.++..+....+. .+... .++.+.+++.+.+ +.+...|+.++..+...++....+.
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~- 190 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI- 190 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH-
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH-
Confidence 8899999999999999999999999854222 12222 5888999997764 4788899999988812222211333
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK 252 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 252 (314)
...++.|.+++...++..+...+..|..++...+.. ... ...++.+..++++.++.+.-.|+.++..+.....
T Consensus 191 -~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 191 -PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp -HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred -HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh-hhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 346667777778889999999999999998776432 211 4568888888888899999999999888766443
Q ss_pred hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
....+++.++..+. +.++..+.-|...|..+.+..
T Consensus 264 -~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 264 -LLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp -HHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC
T ss_pred -HHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc
Confidence 33445555655554 445778999999999988665
No 45
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.62 E-value=2.4e-06 Score=76.88 Aligned_cols=228 Identities=11% Similarity=0.023 Sum_probs=166.8
Q ss_pred cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
+.+......+.++|......++.|..++..+++..++..+.+. +-+++-+..-+++-|+.++...+.+...+.++.|.
T Consensus 168 ~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~ 247 (442)
T KOG2759|consen 168 STNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS 247 (442)
T ss_pred cCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence 3566777888889995556789999999999999999999433 66788889999999999988888888889999999
Q ss_pred HHhccC-CHHHHHHHHHHHHHhcCCCC---Cc----hhhhhcCCcHHHHHHhhccCCchHHHHHH-------HHHHHHhc
Q 021317 97 QILHSG-SVQGRVDAVTALHYLSTCKE---NS----SPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILS 161 (314)
Q Consensus 97 ~lL~~~-~~~~~~~a~~~L~nLs~~~~---~~----~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-------~~~L~~L~ 161 (314)
.++++. .+.+..-++.+++|+....+ .+ ..++..++.+.+-.+.....+++++.+.. -.-...|+
T Consensus 248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~Ls 327 (442)
T KOG2759|consen 248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLS 327 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 999876 56788899999999996653 22 34444554444444444443444443221 11123355
Q ss_pred CChhhhhHH------------------------Hh-ccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHH
Q 021317 162 SSEEGRIAI------------------------TN-SDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLIL 215 (314)
Q Consensus 162 ~~~~~~~~i------------------------~~-~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~ 215 (314)
+.++....+ -. +-..+..|+.+|...+ +.+...|+.=+.....+.| +++..+.
T Consensus 328 SFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP-~gk~vv~ 406 (442)
T KOG2759|consen 328 SFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP-EGKAVVE 406 (442)
T ss_pred cHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc-hHhHHHH
Confidence 544333332 10 1124678888887654 7777888888899988876 7788888
Q ss_pred HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 216 KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 216 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+-||=+.+++++.+++|+++-+|..++..|-.
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 89999999999999999999999999887743
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=98.48 E-value=2.9e-05 Score=77.04 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=143.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCC
Q 021317 53 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATA 132 (314)
Q Consensus 53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~ 132 (314)
.|.+=+.++++.+|-.|+++++++-.. .+. .-.++++.+.|.+.++-+|..|+.++.++...+. ..+.+.|.
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~ 180 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDF 180 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccch
Confidence 344445566777777777777766321 111 1245667788889999999999999999975433 23445678
Q ss_pred cHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHH
Q 021317 133 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 212 (314)
Q Consensus 133 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 212 (314)
++.|.++|.+.++ .+..+|+.+|..+.......-.+ ..+.+..|+..+.+.++..+-..+..|......+.++
T Consensus 181 ~~~L~~LL~D~dp--~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--- 253 (746)
T PTZ00429 181 KKDLVELLNDNNP--VVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--- 253 (746)
T ss_pred HHHHHHHhcCCCc--cHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---
Confidence 8999999987655 78899999999987654333222 2456777888887778887777777775543222111
Q ss_pred HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317 213 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 292 (314)
Q Consensus 213 ~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~ 292 (314)
. ...+..+...+++.++.+.-.|+.++..+........+ ..+...+...+.....++...+.-+-+.+..+.+..+
T Consensus 254 -~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~-~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 254 -A--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI-ERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred -H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH-HHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCH
Confidence 1 23567777788888999999999988888765322111 2222222222211223446677777777777766554
Q ss_pred H
Q 021317 293 E 293 (314)
Q Consensus 293 ~ 293 (314)
+
T Consensus 330 ~ 330 (746)
T PTZ00429 330 N 330 (746)
T ss_pred H
Confidence 3
No 47
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.5e-05 Score=69.16 Aligned_cols=269 Identities=17% Similarity=0.153 Sum_probs=176.1
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
|.++.+.+|.+|+.|+.-+. ++.. ..+.... +.-.++.+.+++....+ -+.|+.+|.|++....-+..+.+. .
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~-~ 83 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD-L 83 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-H
Confidence 57889999999999999888 5554 4444433 23446778888876655 667899999999998888887766 7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-------cCCcHHHHHHhhccCC-chHHHHHHHHHHHHhcCC
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-------ATAVPPLINLLKDCKK-YSKFAEKATALLEILSSS 163 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~~ 163 (314)
++.++..+.++....-...+.+|.||+..++....+.. .|.+.........+.. ... .....-++.||+..
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~nls~~ 162 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFANLSQF 162 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHHHHhhh
Confidence 78888888777555667777899999988765444332 3444444444444322 112 34566778899999
Q ss_pred hhhhhHHHhccCCHH-HHHHHhhcCCHHH-HHHHHHHHHHhhccCcHHHHHHHHHc--CChHHHH---------------
Q 021317 164 EEGRIAITNSDGGIL-TLVETVEDGSLVS-TQHAVGALLSLCQSCRDKYRQLILKE--GAIPGLL--------------- 224 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~-~Lv~ll~~~~~~~-~~~A~~~L~~L~~~~~~~~~~~i~~~--g~v~~Lv--------------- 224 (314)
..+|..+. +...++ .-+.-+.+.+..+ +.-.+++|.|.|+.. .....+... +.++.|+
T Consensus 163 ~~gR~l~~-~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 163 EAGRKLLL-EPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hhhhhHhc-chhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 99999987 455433 2222223333333 456788999999876 445555442 2233322
Q ss_pred ------Hhhh-----cCCHHHHHHHHHHHHHhhcCC--chhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 225 ------RLTV-----EGTFEAQERARTLLDLLRDTP--QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 225 ------~ll~-----~~~~~~~~~A~~~L~~l~~~~--~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
+++. ..++.++..-..+|..||... ++.+...|+.+ ++..+..+.. +++.++..-.+...+++..
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp-ilRElhk~e~-ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP-ILRELHKWEE-DEDIREACEQVVQMLVRLE 317 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH-HHHHHhcCCC-cHHHHHHHHHHHHHHHhcc
Confidence 3333 347888888888777776433 33344455555 7788876664 4677777777777777644
Q ss_pred HH
Q 021317 292 ME 293 (314)
Q Consensus 292 ~~ 293 (314)
++
T Consensus 318 ~~ 319 (353)
T KOG2973|consen 318 PE 319 (353)
T ss_pred cc
Confidence 43
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=4.3e-06 Score=80.45 Aligned_cols=272 Identities=17% Similarity=0.215 Sum_probs=194.0
Q ss_pred cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCC-------Ch-----
Q 021317 19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-------NK----- 83 (314)
Q Consensus 19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~-------~~----- 83 (314)
+.-.+.|+.|+++|. ++. .+|..++. .++++|++.|..+ ++++...++.+++++..+++ .+
T Consensus 34 sTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred ccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 444778999999988 443 56666554 5689999999654 89999999999999888653 22
Q ss_pred -----h-HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhh-cCCcHHHHHHhhccCCchHHHHHHH
Q 021317 84 -----P-AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILD-ATAVPPLINLLKDCKKYSKFAEKAT 154 (314)
Q Consensus 84 -----~-~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~ 154 (314)
. .|...+.|..++..++..|-.+|..++..|.+|-..- +.+..+.. +-+|..|+++|.+... .++..++
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--~IRNe~i 187 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--PIRNEAI 187 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--hhchhHH
Confidence 1 1224689999999999999999999999999997543 44555554 7899999999998644 7888889
Q ss_pred HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-
Q 021317 155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE- 229 (314)
Q Consensus 155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~- 229 (314)
-.|..|+.+..+.+.++.=..+...|+.++... ..-+.+.|+..|.||-..+. .++..+.+.+.+|.|.+++..
T Consensus 188 LlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ~~FrE~~~i~rL~klL~~f 266 (970)
T KOG0946|consen 188 LLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQNFFREGSYIPRLLKLLSVF 266 (970)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chhhHHhccccHHHHHhhcCcc
Confidence 999999999888777765678999999999652 24578999999999998875 679999999999999977653
Q ss_pred --CCH--------HHH--HHHHHHHHHhhcCCch--------hh-cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 230 --GTF--------EAQ--ERARTLLDLLRDTPQE--------KR-LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 230 --~~~--------~~~--~~A~~~L~~l~~~~~~--------~~-~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
++. +++ ..+..+++.+..-... ++ ...+.+..+...+. +.+-..+....+.-.+.+++
T Consensus 267 ~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~-~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 267 EFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM-HPGVPADILTESIITVAEVV 345 (970)
T ss_pred cccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHHHHH
Confidence 221 222 2333455555432211 22 23444554433333 34345677888888888888
Q ss_pred HHHHHHhHHHH
Q 021317 289 QRSMELSMTRI 299 (314)
Q Consensus 289 ~~s~~~~~~~~ 299 (314)
. +-+.|.-.+
T Consensus 346 R-gn~~nQ~~F 355 (970)
T KOG0946|consen 346 R-GNARNQDEF 355 (970)
T ss_pred H-hchHHHHHH
Confidence 4 444554444
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.2e-06 Score=82.46 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=146.1
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAA 92 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l 92 (314)
.|+.|+++..|..++.+|. ...+..+.-... -..+++.+++.|.+++|.+|..|+.+++.++.+ ...-..-..+-.+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 6899999999999999999 554444322221 135678888899999999999999999999986 3333333456677
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 93 PLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 93 ~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
|.|+..+.+. +++++..|+.+|.|++..-. +..+.. .+.+.+++..|.... .+.+++.+.++|...+.....+-.
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhhH
Confidence 8899999876 78999999999999985421 122222 356664444554432 338899999999887765333211
Q ss_pred HHhccCCHHHHHHHhhcCC-HH---HHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHh---hhcCCHHHHHHHHH
Q 021317 170 ITNSDGGILTLVETVEDGS-LV---STQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRL---TVEGTFEAQERART 240 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~-~~---~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~l---l~~~~~~~~~~A~~ 240 (314)
=. -.-.+|.|...|.+.+ .+ +|-....++.-++.. -+++.+.. .-.++.+..+ ..+.+...+++...
T Consensus 512 pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A---VGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 512 PY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARA---VGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH---hhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 11 1236677778887654 33 444444454444432 33555554 2345555555 33345666676666
Q ss_pred HHHHhhcC
Q 021317 241 LLDLLRDT 248 (314)
Q Consensus 241 ~L~~l~~~ 248 (314)
...++|+.
T Consensus 588 ~warmc~i 595 (1075)
T KOG2171|consen 588 FWARMCRI 595 (1075)
T ss_pred HHHHHHHH
Confidence 66677653
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=98.35 E-value=0.00014 Score=72.20 Aligned_cols=214 Identities=13% Similarity=0.076 Sum_probs=138.8
Q ss_pred ccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH
Q 021317 18 TYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 97 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~ 97 (314)
.++|+.+|-.|++.+..... ++. .+ -.++++.+.+.+.++-+|..|+.++.++-..+. ..+.+.|.++.|.+
T Consensus 115 ~d~Np~IRaLALRtLs~Ir~-~~i----~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~ 186 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIRV-SSV----LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVE 186 (746)
T ss_pred CCCCHHHHHHHHHHHHcCCc-HHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHH
Confidence 44555566555555542211 111 11 224556778888999999999999999865433 34456789999999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317 98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGI 177 (314)
Q Consensus 98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v 177 (314)
+|.+.++.+..+|+.+|..+.......- -...+.+..|+..+.+.++|.++ ..+.+|.... ++...... ..+
T Consensus 187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi--~IL~lL~~y~--P~~~~e~~---~il 258 (746)
T PTZ00429 187 LLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQL--YILELLAAQR--PSDKESAE---TLL 258 (746)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHH--HHHHHHHhcC--CCCcHHHH---HHH
Confidence 9999999999999999999985443321 12345677788888777776554 4555553321 22222222 366
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
..+...|++.++.+.-.|+.++.++....+.+..+.+.. ...++|+.+. ++++++|--+...+..+....
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC
Confidence 778888888899999999999999986532222222221 1235566663 567888888887776665543
No 51
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.34 E-value=7.4e-07 Score=54.59 Aligned_cols=40 Identities=45% Similarity=0.566 Sum_probs=38.1
Q ss_pred CchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 021317 38 KTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 77 (314)
Q Consensus 38 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La 77 (314)
+++++..+++.|++|+|+++|.++++++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999997
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=98.31 E-value=0.00014 Score=70.08 Aligned_cols=231 Identities=17% Similarity=0.152 Sum_probs=156.2
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCC----ChhHHhhcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhcC
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAP----NKPAIAASGAAPLLVQILHS-------GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~----~~~~i~~~g~l~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~ 119 (314)
++.-+.+|++.+.+-+..++..+.++...++ .++.|.++=|.+.+-++|++ +....+.-|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4556788888887777788888888877543 24567888788999999988 345778899999999999
Q ss_pred CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317 120 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 199 (314)
Q Consensus 120 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 199 (314)
.++....=--.+-||.|++++..+.+ ..+...|..+|..++..++++..++ +.|+|+.|.+.+.+ .+...+.|+.+|
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 77655432224579999999988654 3677889999999999999999999 79999999999987 455679999999
Q ss_pred HHhhccCcHHHHHHHHH-----cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc---h-hhcchh----hhHHHHHHH
Q 021317 200 LSLCQSCRDKYRQLILK-----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---E-KRLSSS----VLEKIVYDI 266 (314)
Q Consensus 200 ~~L~~~~~~~~~~~i~~-----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~---~-~~~~~~----~~~~lv~~l 266 (314)
.+++.... .+.+-+ ...++.|-..+.......+-..+..|..+-...+ . ...... +..++-..+
T Consensus 164 ~~Lls~~~---~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 164 LNLLSRLG---QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99886542 111111 1234445554544455556666666666644332 1 111122 222332223
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHH
Q 021317 267 AARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 267 ~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
.... ++..+..|..+...|.+
T Consensus 241 ~sr~--~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRL--TPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCC--CHHHHHHHHHHHHHHHH
Confidence 3222 35666666666665554
No 53
>PF05536 Neurochondrin: Neurochondrin
Probab=98.29 E-value=3.4e-05 Score=74.35 Aligned_cols=230 Identities=17% Similarity=0.088 Sum_probs=151.2
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCch---hHHHHHhcCCcHHHHHHhcCC-------CHHHHHHHHHHHHHhccCCCC
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTR---NKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSAAAPN 82 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~ 82 (314)
+.+|++.+++.|..++.-+. +...++. +++.+.++=+.+.+-++|+++ ....+.-|+.+|..++..++.
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~ 90 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPEL 90 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhh
Confidence 35788888777777776666 6665553 344577776678888899762 356778899999999987654
Q ss_pred hhHHhhcCcHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317 83 KPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 83 ~~~i~~~g~l~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 161 (314)
...-.--+-||.|++.+.+.+. +....|+.+|..++..++++..+++.|+++.|++.+.++. ...+.++.++.++.
T Consensus 91 a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~lL~~Ll 167 (543)
T PF05536_consen 91 ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALNLLLNLL 167 (543)
T ss_pred hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHHHHHHHH
Confidence 3332223679999999988877 9999999999999999999999999999999999998842 45678888888887
Q ss_pred CChhhhhHHHhcc----CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH----HHHhhhcC-CH
Q 021317 162 SSEEGRIAITNSD----GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG----LLRLTVEG-TF 232 (314)
Q Consensus 162 ~~~~~~~~i~~~~----g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~----Lv~ll~~~-~~ 232 (314)
...... ..-... ..++.+-..+.......+-..+..|.++-...+....+........+. |..++++. .+
T Consensus 168 s~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~ 246 (543)
T PF05536_consen 168 SRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP 246 (543)
T ss_pred Hhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence 654321 111111 234445555544444555667777777654432000111122233333 33345554 45
Q ss_pred HHHHHHHHHHHHhhc
Q 021317 233 EAQERARTLLDLLRD 247 (314)
Q Consensus 233 ~~~~~A~~~L~~l~~ 247 (314)
..|..|..+...|.+
T Consensus 247 ~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 247 SQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655544
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=8.8e-05 Score=71.70 Aligned_cols=212 Identities=18% Similarity=0.162 Sum_probs=161.2
Q ss_pred CcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCC----
Q 021317 50 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKE---- 122 (314)
Q Consensus 50 ~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~---- 122 (314)
.|+.|++-+.+. =.+-|..|++.|..++. ..|.. +..-|.+++++.|..+ |++....++.++.++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 377888887644 46778899999998875 22333 3466899999999875 89999999999999986653
Q ss_pred --Cch-----------hhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhc
Q 021317 123 --NSS-----------PIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVED 186 (314)
Q Consensus 123 --~~~-----------~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~ 186 (314)
+-. .+. ..+-|..|+..+...+- .++..+...+.++-.+ .+.+..+....-+|..++.+|.+
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 221 222 36788899999988643 7888999999988655 56677777678999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC----CHHHHHHHHHHHHHhhcCC--chh-hcchhhh
Q 021317 187 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG----TFEAQERARTLLDLLRDTP--QEK-RLSSSVL 259 (314)
Q Consensus 187 ~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~l~~~~--~~~-~~~~~~~ 259 (314)
....+|..++-.|..|+.+++ ..++.+.=++++..|..+++.. ..-+.+-|..+|.||-+.+ ++. ..+-+.+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhchhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 889999999999999999986 4555555599999999998763 2356788899999988655 233 3445677
Q ss_pred HHHHHHHh
Q 021317 260 EKIVYDIA 267 (314)
Q Consensus 260 ~~lv~~l~ 267 (314)
+.+...|.
T Consensus 257 ~rL~klL~ 264 (970)
T KOG0946|consen 257 PRLLKLLS 264 (970)
T ss_pred HHHHhhcC
Confidence 77765544
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.28 E-value=1.4e-05 Score=73.09 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=132.3
Q ss_pred hhHHhhcCcHHHHHHHhccCCHHH--HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 83 KPAIAASGAAPLLVQILHSGSVQG--RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 83 ~~~i~~~g~l~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
+..|...|++..|++++..++.+. +..|...|..+... +|++++++.| +..++.+-+... ..+.....+++|.|+
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e-~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKERE-PVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcC-cHHHHHHHHHHHHHH
Confidence 455667899999999999987654 88888888776544 6899999876 555555555533 346778889999999
Q ss_pred cCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317 161 SSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR 239 (314)
Q Consensus 161 ~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~ 239 (314)
-.+ ++....++ ..|+++.++-..+..++.+...|+-+|.|++.+...+.+..|++..+.++|.-+..+.++-.+-+|+
T Consensus 250 FKHSeet~~~Lv-aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLV-AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHH-hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 877 55677788 7999999998888888999999999999998876668899999999999999988888888899999
Q ss_pred HHHHHhhcCC
Q 021317 240 TLLDLLRDTP 249 (314)
Q Consensus 240 ~~L~~l~~~~ 249 (314)
.++.-++..-
T Consensus 329 lAV~vlat~K 338 (832)
T KOG3678|consen 329 LAVAVLATNK 338 (832)
T ss_pred HHHhhhhhhh
Confidence 8888887544
No 56
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=2.6e-06 Score=52.08 Aligned_cols=39 Identities=33% Similarity=0.368 Sum_probs=37.0
Q ss_pred HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 209 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 209 ~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
++++.+++.|+++.|++++++.++.+++.|+|+|+||+.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999999999974
No 57
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.23 E-value=6.7e-05 Score=67.80 Aligned_cols=268 Identities=12% Similarity=0.055 Sum_probs=177.7
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhH---HHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNK---VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAA 88 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~---~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~ 88 (314)
+.++...|.-++..+.+.+. ++.-+..+- ..-... ..|-..+.+ .+.+....++++|..+...++.|-.++.
T Consensus 120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~---~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~ 196 (442)
T KOG2759|consen 120 LNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYK---GFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVI 196 (442)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHH---HHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeee
Confidence 35667778888887777766 443322211 111111 233444544 5677778889999999999999999999
Q ss_pred cCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh--
Q 021317 89 SGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-- 164 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-- 164 (314)
..|+..++..+.++ +-.++-..+.+++-|+.++...+.+..-+.|+.|.+++++... +++..-+++++.|+....
T Consensus 197 adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 197 ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred cCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCch
Confidence 99999999999533 5678899999999999999888888778999999999998654 388889999999998765
Q ss_pred -----hhhhHHHhccCCHHHHHHHhhc---CCHHHHH-------HHHHHHHHhhccC--------------c--------
Q 021317 165 -----EGRIAITNSDGGILTLVETVED---GSLVSTQ-------HAVGALLSLCQSC--------------R-------- 207 (314)
Q Consensus 165 -----~~~~~i~~~~g~v~~Lv~ll~~---~~~~~~~-------~A~~~L~~L~~~~--------------~-------- 207 (314)
+....++ .+.++..++.|.. .++++.. .--.-...||..+ |
T Consensus 276 ~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 276 RETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred hhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 3345555 3455666666643 2333221 1111122233221 0
Q ss_pred HHHHHHHHHc--CChHHHHHhhhcCC-HHHHHHHHHHHHHhhc-CCchh--hcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317 208 DKYRQLILKE--GAIPGLLRLTVEGT-FEAQERARTLLDLLRD-TPQEK--RLSSSVLEKIVYDIAARVDGADKAAETAK 281 (314)
Q Consensus 208 ~~~~~~i~~~--g~v~~Lv~ll~~~~-~~~~~~A~~~L~~l~~-~~~~~--~~~~~~~~~lv~~l~~~~~~~~~~~~~A~ 281 (314)
.++...+-+. ..++.|+.+++.++ |.+---|+-=+...-+ +|+++ +.+.|+-+.+...|. ..+++++.+|.
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln---h~d~~Vry~AL 430 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN---HEDPEVRYHAL 430 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc---CCCchHHHHHH
Confidence 0223333332 36888999888765 6666666665666554 44443 345788886654443 44589999999
Q ss_pred HHHHHHHHH
Q 021317 282 RLLQDMVQR 290 (314)
Q Consensus 282 ~~L~~l~~~ 290 (314)
.++..+.-+
T Consensus 431 lavQ~lm~~ 439 (442)
T KOG2759|consen 431 LAVQKLMVH 439 (442)
T ss_pred HHHHHHHhh
Confidence 998887754
No 58
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00014 Score=73.12 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHHh--cCCcHHHHHHhcCC--C--------------HHHHHHHHHHHHHhccCCC
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIAT--AGAIPPLVELLKFQ--N--------------GTLRELAAAAILTLSAAAP 81 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~--~--------------~~~~~~a~~~L~~La~~~~ 81 (314)
++.+|..|+..|. ++..-+...+.... .-.++.++.++... + .+....|.++|-.+|.+-.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 5778888888877 55443333232222 12245555555321 1 1133456667777766533
Q ss_pred ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 82 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 82 ~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
.+... .=..+.+-.+|.+.+..-|..++.+|..++... .+.+.. ..+++.++..|+++++ .++..|+.++..
T Consensus 342 g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~Dphp--rVr~AA~naigQ 415 (1075)
T KOG2171|consen 342 GKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHP--RVRYAALNAIGQ 415 (1075)
T ss_pred hhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHh
Confidence 22221 123455556678899999999999988887432 122222 3577888888888655 899999999999
Q ss_pred hcCCh-hhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHH-HhhhcCCHHH
Q 021317 160 LSSSE-EGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLL-RLTVEGTFEA 234 (314)
Q Consensus 160 L~~~~-~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv-~ll~~~~~~~ 234 (314)
++.+- +.-..-. +.-.++.|+..+.+ +++.++..|+.+|.|++...+ ...+.- .+.+++++ .+..++.+.+
T Consensus 416 ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 416 MSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSSKPYV 491 (1075)
T ss_pred hhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 99983 3333333 35577788888876 568999999999999998765 333433 45666444 4666788999
Q ss_pred HHHHHHHHHHhhcCCchhhcc--hhhhHHHHHHHh
Q 021317 235 QERARTLLDLLRDTPQEKRLS--SSVLEKIVYDIA 267 (314)
Q Consensus 235 ~~~A~~~L~~l~~~~~~~~~~--~~~~~~lv~~l~ 267 (314)
|+.++.++...+...+.+... ...++-+...|.
T Consensus 492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 999999999999877765554 234554544454
No 59
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.18 E-value=0.00026 Score=65.77 Aligned_cols=191 Identities=18% Similarity=0.049 Sum_probs=124.5
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA 130 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 130 (314)
++.|+..|.+.++.++..++.+|..+ ...+..+.|+.+|.+.++.++..++.++..- ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RH 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------cc
Confidence 67777788777777777777777654 5567778888888888888888777776651 12
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
...+.+..+|++.+. .++..|..+|..+.. ...++.|...+.+.++.++..|+++|..+... +.
T Consensus 147 ~~~~~L~~~L~d~d~--~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~---~A 210 (410)
T TIGR02270 147 DPGPALEAALTHEDA--LVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR---LA 210 (410)
T ss_pred ChHHHHHHHhcCCCH--HHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH---hH
Confidence 346788888876544 777888888876542 45777788888999999999999998776431 11
Q ss_pred HHHHH----Hc------------------CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhh
Q 021317 211 RQLIL----KE------------------GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA 268 (314)
Q Consensus 211 ~~~i~----~~------------------g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~ 268 (314)
...+. +. ..++.|..++++ +.++..++.+|..+.. ...++.++..+.
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~--------p~av~~L~~~l~- 279 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD--------VEAAPWCLEAMR- 279 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC--------cchHHHHHHHhc-
Confidence 11111 11 133344444443 3366666666665433 335555544443
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 269 RVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 269 ~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
++..++.|...++.++.--++
T Consensus 280 ----d~~~aR~A~eA~~~ItG~~l~ 300 (410)
T TIGR02270 280 ----EPPWARLAGEAFSLITGMDVA 300 (410)
T ss_pred ----CcHHHHHHHHHHHHhhCCCcc
Confidence 245888899999888854333
No 60
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4.9e-05 Score=66.09 Aligned_cols=189 Identities=22% Similarity=0.187 Sum_probs=133.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA 130 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 130 (314)
-.++.+|.+.+|.++..|+.-+.+++.. ..+.... +...++.+.+++....+ -..|+.+|.|++.++..++.+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999998877 3333332 44578888999888776 678899999999999999888887
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-cc----CCHHHHHHHhhcCC---HHHHHHHHHHHHHh
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SD----GGILTLVETVEDGS---LVSTQHAVGALLSL 202 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~v~~Lv~ll~~~~---~~~~~~A~~~L~~L 202 (314)
.+..++..+-+... ...+..+-+|.||+..++....+.. -. .++..++....+.+ ..--..-+.++.||
T Consensus 83 -~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred -HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77777777766422 5566788889999999877655531 11 34445555443322 12236778889999
Q ss_pred hccCcHHHHHHHHHcCC--hHHHHHhhhcCCHHHHHHHH-HHHHHhhcCC
Q 021317 203 CQSCRDKYRQLILKEGA--IPGLLRLTVEGTFEAQERAR-TLLDLLRDTP 249 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~--v~~Lv~ll~~~~~~~~~~A~-~~L~~l~~~~ 249 (314)
+... ..|..+.+... .+.|+.+-. .+..+|+..+ ++|.|+|-..
T Consensus 160 s~~~--~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~ 206 (353)
T KOG2973|consen 160 SQFE--AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA 206 (353)
T ss_pred hhhh--hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc
Confidence 9886 56888877553 334555554 5666666554 7999988654
No 61
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.16 E-value=9.9e-06 Score=58.31 Aligned_cols=86 Identities=34% Similarity=0.435 Sum_probs=70.3
Q ss_pred cHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 51 IPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 51 v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
||.|++.| .++++.++..++.+|+.+ .....++.|+++++++++.++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 58899999 788999999999999955 34467999999999999999999999999872 4
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALL 157 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 157 (314)
..+++.|.+++.+++. ..++..|..+|
T Consensus 61 ~~~~~~L~~~l~~~~~-~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDD-EVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHhhc
Confidence 5699999999988643 35567777665
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00039 Score=69.37 Aligned_cols=212 Identities=19% Similarity=0.155 Sum_probs=147.2
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 95 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L 95 (314)
+-..+++++|+-|+..+..+..+.+.-..+++.|++..|+.+|-+ -|..++.++.+|..|+.+.+--..-.+.|++..+
T Consensus 1780 lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yi 1858 (2235)
T KOG1789|consen 1780 LRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYI 1858 (2235)
T ss_pred HHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhh
Confidence 334467899999999999777778888889999999999999954 5888999999999999987766666677887777
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHhcCCC-----------------------------------------------------
Q 021317 96 VQIL-HSGSVQGRVDAVTALHYLSTCK----------------------------------------------------- 121 (314)
Q Consensus 96 v~lL-~~~~~~~~~~a~~~L~nLs~~~----------------------------------------------------- 121 (314)
...+ .+.++..+..++..+..|..++
T Consensus 1859 l~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS 1938 (2235)
T KOG1789|consen 1859 LSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVS 1938 (2235)
T ss_pred hHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHH
Confidence 7654 4567788888888888776300
Q ss_pred -------------------------------------------CCchhhhhcC------------CcHHHHHHhhccCCc
Q 021317 122 -------------------------------------------ENSSPILDAT------------AVPPLINLLKDCKKY 146 (314)
Q Consensus 122 -------------------------------------------~~~~~i~~~g------------~i~~Lv~lL~~~~~~ 146 (314)
-+|..+.+.+ .++.++++|...+++
T Consensus 1939 ~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~pe 2018 (2235)
T KOG1789|consen 1939 GIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPE 2018 (2235)
T ss_pred HHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcc
Confidence 0111111111 112222222221111
Q ss_pred h------------------------------------------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh
Q 021317 147 S------------------------------------------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV 184 (314)
Q Consensus 147 ~------------------------------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll 184 (314)
+ .+-..|+++|+.|+.+.-..+.|. ...++..++..|
T Consensus 2019 qh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l~~i~~~m~~m 2097 (2235)
T KOG1789|consen 2019 QHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMA-QLPCIDGIMKSM 2097 (2235)
T ss_pred cchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHh-ccccchhhHHHH
Confidence 0 112457788999999888888888 677888888888
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317 185 EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 230 (314)
Q Consensus 185 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~ 230 (314)
+.... ..-.|+.+|--+...+.++......+.|.++.|++++...
T Consensus 2098 kK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2098 KKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred Hhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 76433 3347778887776665567777778899999999998754
No 63
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00019 Score=69.16 Aligned_cols=264 Identities=13% Similarity=0.135 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHhHhhccCch-h-HHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHH
Q 021317 20 FEGYARRLNLMGPLWQLSKTR-N-KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLL 95 (314)
Q Consensus 20 ~~~~~~~~a~~al~l~~~~~~-~-~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~L 95 (314)
++..+|..|+.||.++-+... | -...-.+-..+..++.-.+++.+++..|..+|..+..- ..-...+ ....+..-
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 356788899999884432211 1 11111223345566666788999999999999997652 1112222 23345556
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCC----------------CCCchhhhh---cCCcHHHHHHhhc------cCCchHHH
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTC----------------KENSSPILD---ATAVPPLINLLKD------CKKYSKFA 150 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~----------------~~~~~~i~~---~g~i~~Lv~lL~~------~~~~~~~~ 150 (314)
+..++++++++...++..=.+++.- ++....+.+ .+.+|.|+++|.. +++| ...
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW-np~ 343 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDW-NPA 343 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccC-cHH
Confidence 6778899999999998877777641 111122222 3678888888854 2223 344
Q ss_pred HHHHHHHHHhcCChhhhhHHHhccCCHHHHHHH----hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHh
Q 021317 151 EKATALLEILSSSEEGRIAITNSDGGILTLVET----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 226 (314)
Q Consensus 151 ~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~l----l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~l 226 (314)
..|..+|.-++.. + ...++++.+.+ +++++-.-++.|+.++..+-.+.. ..+..-.-.+++|.++.+
T Consensus 344 kAAg~CL~l~A~~-------~-~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~-~~~Lt~iV~qalp~ii~l 414 (859)
T KOG1241|consen 344 KAAGVCLMLFAQC-------V-GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE-PDKLTPIVIQALPSIINL 414 (859)
T ss_pred HHHHHHHHHHHHH-------h-cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc-hhhhhHHHhhhhHHHHHH
Confidence 5565666544432 1 23344444444 455666778889999988876643 334444446789999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317 227 TVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 294 (314)
Q Consensus 227 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~ 294 (314)
+.+.+-.+++.++|++..++++..+...-..-....+..+..+....++....+.+++-.|+++..|.
T Consensus 415 m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 415 MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh
Confidence 99888999999999999999988764444444445555566555556899999999999999775553
No 64
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00025 Score=68.41 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=169.6
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC------------
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------------ 79 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~------------ 79 (314)
.++..+++|.++|.+|..+|. +.+-..+.-..-........-+.-++++++++..++...=.+++..
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357778999999999999988 5554444433333434445556677888999998888877766642
Q ss_pred CCChh----HHh---hcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc--
Q 021317 80 APNKP----AIA---ASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC-- 143 (314)
Q Consensus 80 ~~~~~----~i~---~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-- 143 (314)
+.+.. .+. -.+.+|-|+++|... +-.....|..+|.-++.. ++..++++++..++..
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~ 374 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQ 374 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcC
Confidence 11111 111 136888899988652 123445555566555533 1223555666666532
Q ss_pred CCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317 144 KKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 222 (314)
Q Consensus 144 ~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~ 222 (314)
+++.+-++.+.=++..+-..+ ..+..-. -.+++|.++.++.+.+-.++..+.|+|..++...++..-....-.+.++.
T Consensus 375 ~pdwr~reaavmAFGSIl~gp~~~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~ 453 (859)
T KOG1241|consen 375 NPDWRNREAAVMAFGSILEGPEPDKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSA 453 (859)
T ss_pred CcchhhhhHHHHHHHhhhcCCchhhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHH
Confidence 223355666666665555443 3333323 37899999999998888889999999999998765321112222344555
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc-------hhhhHHHHHHHhhcC---CCH-HHHHHHHHHHHHHHHHHH
Q 021317 223 LLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS-------SSVLEKIVYDIAARV---DGA-DKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 223 Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~-------~~~~~~lv~~l~~~~---~~~-~~~~~~A~~~L~~l~~~s 291 (314)
+++-+. +.|++-.+++|++-+|+++..+.... ..+.+.++..|..-. +|+ ...+..|=++|..+++.+
T Consensus 454 l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 454 LLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred HHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence 555443 56999999999999999665432222 235566766666322 222 245788888999998877
Q ss_pred HH
Q 021317 292 ME 293 (314)
Q Consensus 292 ~~ 293 (314)
+.
T Consensus 533 t~ 534 (859)
T KOG1241|consen 533 TD 534 (859)
T ss_pred cH
Confidence 54
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.02 E-value=0.00013 Score=62.52 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=114.8
Q ss_pred ccCCHHHHHHHHHHHHHhcCCC---CCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh-HHHhc
Q 021317 100 HSGSVQGRVDAVTALHYLSTCK---ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI-AITNS 173 (314)
Q Consensus 100 ~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~ 173 (314)
.+.+-+.+..++.-|..+.... +....+.+ ...+..+...+.+... .+...|+.++..++..-...- ..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~-- 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYA-- 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHH--
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHH--
Confidence 4567888999999999998443 34444444 2566777777776543 788889999888887643332 222
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc--h
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--E 251 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~--~ 251 (314)
...+|.|+..+.++..-+++.|..+|..++...+ .-..+ .++.+.....+.++.++..++..+..+....+ .
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3478899999999888999999999999998763 01111 14556667888999999999988887765444 2
Q ss_pred hhcc-hhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 021317 252 KRLS-SSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRSMELSM 296 (314)
Q Consensus 252 ~~~~-~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s~~~~~ 296 (314)
..+. .+.++.++..+... .|+++++++.|+.++..+-++-+++..
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 2333 23233344433321 588899999999999999988777653
No 66
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00016 Score=68.90 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=166.3
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
..+.+++.+|..|+.++- ..-.. ++..+.. --.++.+..+-.++++++|.+.+.+|..|-.....|-.--=.++++
T Consensus 182 f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ive 259 (885)
T KOG2023|consen 182 FFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVE 259 (885)
T ss_pred HHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHH
Confidence 346678999999999887 33322 2233332 2345666666677899999999999999876533222222246788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCch------------------------
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYS------------------------ 147 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~------------------------ 147 (314)
.++..-.+.++++-..|+.....++..+..+..+.. ...+|.|+.-+...+.+.
T Consensus 260 yML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfh 339 (885)
T KOG2023|consen 260 YMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFH 339 (885)
T ss_pred HHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhh
Confidence 888888899999999999999999988855554444 467777776443211100
Q ss_pred ------------------------------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh----hcCCHHHHH
Q 021317 148 ------------------------------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV----EDGSLVSTQ 193 (314)
Q Consensus 148 ------------------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll----~~~~~~~~~ 193 (314)
.++....++|--|+. +. ....++.++.+| .+..=.++|
T Consensus 340 ksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf-~~elL~~l~PlLk~~L~~~~W~vrE 411 (885)
T KOG2023|consen 340 KSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VF-GDELLPILLPLLKEHLSSEEWKVRE 411 (885)
T ss_pred hchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hh-HHHHHHHHHHHHHHHcCcchhhhhh
Confidence 111111111211111 11 123444455444 445567889
Q ss_pred HHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--h-hcchhhhHHHHHHHhh
Q 021317 194 HAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--K-RLSSSVLEKIVYDIAA 268 (314)
Q Consensus 194 ~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~-~~~~~~~~~lv~~l~~ 268 (314)
.+.-+|..++.+. .+-+.. .-.+|.|++++.+..+-+|.-.+|+|...++.--+ . ..-..++++++..+.
T Consensus 412 agvLAlGAIAEGc----M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll- 486 (885)
T KOG2023|consen 412 AGVLALGAIAEGC----MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL- 486 (885)
T ss_pred hhHHHHHHHHHHH----hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-
Confidence 9999999999654 333333 22677888889999999999999999998764421 1 111235555555554
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 021317 269 RVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 269 ~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
|++.+++|.|..+..-+-...
T Consensus 487 --D~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 487 --DSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred --cccHHHHHHHHHHHHHHHHhc
Confidence 888999999999988776544
No 67
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0043 Score=56.71 Aligned_cols=255 Identities=17% Similarity=0.135 Sum_probs=171.0
Q ss_pred HhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC------CCCh----hHHhhcCcHHHHHHHhc
Q 021317 31 GPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------APNK----PAIAASGAAPLLVQILH 100 (314)
Q Consensus 31 al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~------~~~~----~~i~~~g~l~~Lv~lL~ 100 (314)
-+...++-|+-.-.+++.++|+.|+++|.+++.++....+..|..|+-. .+.. ..+++.++++.|++-++
T Consensus 107 ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 107 EMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 3445556677777889999999999999999999999999999999863 2222 34457789999998876
Q ss_pred cCCHH------HHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHHHh
Q 021317 101 SGSVQ------GRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITN 172 (314)
Q Consensus 101 ~~~~~------~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~ 172 (314)
.=++. ...+++..+-|+. ..++.+..+++.|.+.-|+.-+............|..++.-+-.+. +++....
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~- 265 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG- 265 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc-
Confidence 64443 3466777888888 5667888888888888877755543233345678888888777664 4777776
Q ss_pred ccCCHHHHHHHhh---cCC------HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317 173 SDGGILTLVETVE---DGS------LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243 (314)
Q Consensus 173 ~~g~v~~Lv~ll~---~~~------~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~ 243 (314)
...+|..+++-+. ..+ ...-++-..+|+.+-... ++++.+....+++-..-+++. ....+..|..+|.
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP--ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD 342 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh--hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence 6889998888772 222 344566677777766554 669999987777755555554 4555667778887
Q ss_pred HhhcCCch-----hhcchhhhHHHHHHHhhcC------CCH-HHHHHHHHHHHHHHHH
Q 021317 244 LLRDTPQE-----KRLSSSVLEKIVYDIAARV------DGA-DKAAETAKRLLQDMVQ 289 (314)
Q Consensus 244 ~l~~~~~~-----~~~~~~~~~~lv~~l~~~~------~~~-~~~~~~A~~~L~~l~~ 289 (314)
....++.. +.++..++..+.+.-.... ..+ +..-+...++|..+-.
T Consensus 343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 343 HAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 77665542 4455555555554433111 111 2334556666555544
No 68
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.93 E-value=0.0004 Score=55.31 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=106.5
Q ss_pred hHHhhcCcHHHHHHHhccCC------HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317 84 PAIAASGAAPLLVQILHSGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157 (314)
Q Consensus 84 ~~i~~~g~l~~Lv~lL~~~~------~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 157 (314)
..+...||++.|+++++++. .+....++.++..|-..............+..++........+..+.+.++++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 34567899999999999876 377788999999999887777788888899999999987655668889999999
Q ss_pred HHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 158 ~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
-++..+.+..-..+.+.=-++.|+.+|+..++.++.+|...+-.|-...+++-|+.+.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99998877644444355678999999999999999999999888766555444554443
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00021 Score=66.86 Aligned_cols=224 Identities=18% Similarity=0.115 Sum_probs=156.8
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhc---cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQL---SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA 88 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~---~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 88 (314)
+..||+.+++++|..+-.++. +.. .++.. +--...++.++.-+.++++.++..|...+.....-....-...-
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~ 289 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYL 289 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence 457889999999977776655 222 22221 12245678899999999999999998888887665555555556
Q ss_pred cCcHHHHHHHhccCCHH-HHHHHH---HHHHHhcCCCCCchhhhhc-CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 89 SGAAPLLVQILHSGSVQ-GRVDAV---TALHYLSTCKENSSPILDA-TAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~-~~~~a~---~~L~nLs~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
+|.+..++.++.+..+. .++.+. ..|..+...+..+.. ++. ..++.|.+.+.+... +.+..++..+..|-..
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhh
Confidence 78888888888776553 333332 235555555544444 443 466777777777544 5566788888888877
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317 164 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~ 243 (314)
..++-... .....+.|+.-|.+.++.+...++..++++|.+... . -. ...+..|+++.+.+..-....+.-+++
T Consensus 367 ~p~ql~~h-~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~--~-~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 367 APGQLLVH-NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS--P-NL--RKFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred Ccchhhhh-ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc--c-cH--HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 77776666 578899999999999999999999999999987642 2 11 124556666666666666777888888
Q ss_pred HhhcC
Q 021317 244 LLRDT 248 (314)
Q Consensus 244 ~l~~~ 248 (314)
.+|.-
T Consensus 441 qlC~l 445 (675)
T KOG0212|consen 441 QLCLL 445 (675)
T ss_pred HHHHH
Confidence 88753
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.92 E-value=0.00014 Score=66.65 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=127.3
Q ss_pred HHHHhcCCcHHHHHHhcCCCHH--HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhc-
Q 021317 43 VKIATAGAIPPLVELLKFQNGT--LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLS- 118 (314)
Q Consensus 43 ~~l~~~g~v~~Lv~lL~~~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs- 118 (314)
..+...|++..|+.++.+++-+ ++..+...|-.+. ..+|+..++..| +..++.+-+. ..++.....++.|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4456678999999999988654 5888888776653 357788888776 5555555443 45678888899999999
Q ss_pred CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHH
Q 021317 119 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAV 196 (314)
Q Consensus 119 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~ 196 (314)
.+++.+..++..|++..++-..+..++ .+...|.-+|.|++.+ ...++.|+ +..+-+=|..+-.+.++-++-.|+
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P--~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDP--ALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCH--HHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHH
Confidence 566789999999999999888877644 7788888889887655 67888888 566767777776677778889999
Q ss_pred HHHHHhhccCcHHHHHHHHHcC
Q 021317 197 GALLSLCQSCRDKYRQLILKEG 218 (314)
Q Consensus 197 ~~L~~L~~~~~~~~~~~i~~~g 218 (314)
-+.+-|+... +.-..+.+.|
T Consensus 329 lAV~vlat~K--E~E~~VrkS~ 348 (832)
T KOG3678|consen 329 LAVAVLATNK--EVEREVRKSG 348 (832)
T ss_pred HHHhhhhhhh--hhhHHHhhcc
Confidence 9999988664 4334444444
No 71
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.88 E-value=0.0016 Score=59.78 Aligned_cols=222 Identities=16% Similarity=0.039 Sum_probs=155.7
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
++-+++.+++..+.+.+..+..+++.-..+.+.+.--.++.-|..+ +..-|++|...++.+...+.+...+ ..|.+.
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvr 111 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVR 111 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHH
Confidence 3444458999999999997777888888888888767777777644 4556889999998877654433332 568899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
.++.+.++.+...+..|+.+|+.++..+ -..+...|++..|++.+.++.. ++.+..+.++..+-.++..|+.+. .
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~--~~~~~l~~~lL~lLd~p~tR~yl~-~ 186 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF--SISESLLDTLLYLLDSPRTRKYLR-P 186 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH--hHHHHHHHHHHHHhCCcchhhhhc-C
Confidence 9999999999999999999999999542 3456789999999999998644 477888888889988888888775 2
Q ss_pred cCCHHHHHHHhhcC-------CH--HHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317 174 DGGILTLVETVEDG-------SL--VSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLL 242 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~-------~~--~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L 242 (314)
.--++.++.-+.+. +. +--..+..++..+-...++ --.+.. ..+++.|+..++..++++++.-..++
T Consensus 187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll 264 (371)
T PF14664_consen 187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLL 264 (371)
T ss_pred CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23355555555332 11 1223344444443333221 111111 14788888888888888887777766
Q ss_pred HHh
Q 021317 243 DLL 245 (314)
Q Consensus 243 ~~l 245 (314)
..+
T Consensus 265 ~dl 267 (371)
T PF14664_consen 265 FDL 267 (371)
T ss_pred HHH
Confidence 665
No 72
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.86 E-value=0.0023 Score=58.14 Aligned_cols=158 Identities=28% Similarity=0.283 Sum_probs=115.2
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
-.++.+..++.+.++.++..|+.+|+.+ .....++.++.++. +++..++..+..+|..+-...
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~------ 137 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGEL----------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDER------ 137 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh------
Confidence 4578888899888888998888877777 55678899999998 588999999999998765432
Q ss_pred hhcCCcHHHHHHhhccCCch----------HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317 128 LDATAVPPLINLLKDCKKYS----------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 197 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~----------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~ 197 (314)
++.+++..+.+..... .++..+...+.. +. +.-.++.+..++.+....++..|..
T Consensus 138 ----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~----------~~-~~~~~~~l~~~l~~~~~~vr~~Aa~ 202 (335)
T COG1413 138 ----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----------LG-DPEAIPLLIELLEDEDADVRRAAAS 202 (335)
T ss_pred ----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH----------cC-ChhhhHHHHHHHhCchHHHHHHHHH
Confidence 5888888888754211 111222222211 11 3456788999999988899999999
Q ss_pred HHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 198 ~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+|..+...+ ....+.+...+.+.+..++..++..|..+..
T Consensus 203 aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 203 ALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 999988653 2345667777777888888777777766544
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.84 E-value=0.0018 Score=58.81 Aligned_cols=157 Identities=28% Similarity=0.302 Sum_probs=116.3
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
-.++.+++.+.+++..++..++..++.+ ...-+++.+..+|.+.++.++..++.+|..+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 4678899999998899999998886665 4567899999999999999999999987765433
Q ss_pred hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH------------HHHHHHH
Q 021317 129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL------------VSTQHAV 196 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~------------~~~~~A~ 196 (314)
..++.|+.++.. +.+..++..+..+|..+.. ..++..++..+.+... .++..+.
T Consensus 105 --~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 --EAVPPLVELLEN-DENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred --hHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 489999999996 2334777788887766543 3347778888876542 2333333
Q ss_pred HHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 197 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 197 ~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
..|..+- +...++.+...+.+.+..++..|..+|..+..+.
T Consensus 171 ~~l~~~~------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 171 EALGELG------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHcC------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 3333332 1236888888999999999999999998887664
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.84 E-value=0.0049 Score=56.65 Aligned_cols=244 Identities=14% Similarity=0.101 Sum_probs=171.8
Q ss_pred hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC--CHHHHHHHH
Q 021317 34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAV 111 (314)
Q Consensus 34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~ 111 (314)
+..++++-|..+.-....+.+..++-+++.+++..+.++++.+..+.+.-..+.+.+.--.++.-|..+ +..-|++|+
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QAL 89 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQAL 89 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHH
Confidence 566777767666655566777766666669999999999999999888888888877666777777654 456788999
Q ss_pred HHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHH
Q 021317 112 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 191 (314)
Q Consensus 112 ~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~ 191 (314)
..++.+..-+.+... .-.|.+..++.+..+.++ +++..|+.+|+.++..++. .+. +.|++..|++.+.++...+
T Consensus 90 kliR~~l~~~~~~~~-~~~~vvralvaiae~~~D--~lr~~cletL~El~l~~P~--lv~-~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 90 KLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDD--RLRRICLETLCELALLNPE--LVA-ECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCch--HHHHHHHHHHHHHHhhCHH--HHH-HcCCHHHHHHHHHhccHhH
Confidence 999998865443332 256788889999988544 7889999999998875432 233 6899999999998887778
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-------CH--HHHHHHHHHHHHhhcCCchhhc----chhh
Q 021317 192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-------TF--EAQERARTLLDLLRDTPQEKRL----SSSV 258 (314)
Q Consensus 192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~--~~~~~A~~~L~~l~~~~~~~~~----~~~~ 258 (314)
.+..+.++..+-..+ ..|+.+...--++.+..-+.+. +. +--..+..++..+-++.++-+. ....
T Consensus 164 ~~~l~~~lL~lLd~p--~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~ 241 (371)
T PF14664_consen 164 SESLLDTLLYLLDSP--RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG 241 (371)
T ss_pred HHHHHHHHHHHhCCc--chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence 899999999998765 4577666544466666533222 22 2334555566666666655211 1246
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 259 LEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
+..++..|. .. +++.++..-.++..+-
T Consensus 242 lksLv~~L~--~p-~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 242 LKSLVDSLR--LP-NPEIRKAILDLLFDLL 268 (371)
T ss_pred HHHHHHHHc--CC-CHHHHHHHHHHHHHHH
Confidence 666776665 22 3667777777776655
No 75
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.0014 Score=65.52 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=161.3
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHH---hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCch
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAI---AASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSS 125 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i---~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~ 125 (314)
+|.++++|-+ +.+-+++|.-|+.+ |-+...+ ..-|+.|-.++||.++-.++|.....+=..+- .++..+.
T Consensus 474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 3445554433 23345566666654 2233332 25699999999999999888877766655554 6667777
Q ss_pred hhhhcCCcHHHHHHhhc-cCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 021317 126 PILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSL 202 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L 202 (314)
.+++.++-...+..|.. ..-.++-+..|.-+|.-++.+ .-.++... +.+.+...+++|.++ .+-++.+++.+|..|
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 88887777777777766 333335556677778888776 56777787 788999999999886 588999999999999
Q ss_pred hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC----ch--hhc----c----hhhhHHHH-----
Q 021317 203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE--KRL----S----SSVLEKIV----- 263 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~----~~--~~~----~----~~~~~~lv----- 263 (314)
=.+.+ +.|-.=++.++.++|..++.+..++++.+|+-+|..+-... .+ ..+ . ...+|..+
T Consensus 628 W~d~~-~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 628 WEDYD-EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred hhhcc-hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 87764 55555566899999999999999999999999999887642 11 111 0 01122221
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 264 YDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 264 ~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
..+....+|++-.+.+..-.|.+++-..
T Consensus 707 ~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 707 SLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 2233335888888877888888887543
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.83 E-value=0.00063 Score=63.23 Aligned_cols=153 Identities=19% Similarity=0.035 Sum_probs=113.9
Q ss_pred CCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317 49 GAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 49 g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
.+++.++..|. .+++++...++.++... . ...++..|+..|.++++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 45778888884 55677766554444322 1 122489999999999999999999998753
Q ss_pred hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 207 (314)
...+..+.|+.++.+.++ .++..++.++.. . .....+.+..+|++.++.++..|+.+|..+....
T Consensus 114 ~~~~a~~~L~~~L~~~~p--~vR~aal~al~~-----------r-~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~- 178 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEP--PGRAIGLAALGA-----------H-RHDPGPALEAALTHEDALVRAAALRALGELPRRL- 178 (410)
T ss_pred CchHHHHHHHHHhcCCCh--HHHHHHHHHHHh-----------h-ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-
Confidence 334588899999987644 676666666654 1 2335678999999999999999999999987542
Q ss_pred HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
.++.|...+.+.++.++..|++.+..+..
T Consensus 179 -----------a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 179 -----------SESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 56678888889999999999998876643
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.80 E-value=0.00025 Score=60.78 Aligned_cols=185 Identities=15% Similarity=0.046 Sum_probs=112.7
Q ss_pred cccCCHHHHHHHHHHhH-hhccC--chhHHHHHh--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSK--TRNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~--~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
.++.+.+.|..|+..|. ++.++ ......+.+ ...+..+...+.+....+...|+.++..++..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36678999999999998 66655 344444432 25667788888777788888999999999875332222223568
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCC-cHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATA-VPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~ 169 (314)
+|.|++.+.++...++..|..+|..+...-.... .. .+.+...+.+.+ +.++..++..+..+..... ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn--~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKN--PQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHccchHhh
Confidence 8999999999999999999999999986543111 12 334444455543 4788888888877655433 2222
Q ss_pred HHh---ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH
Q 021317 170 ITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 208 (314)
Q Consensus 170 i~~---~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~ 208 (314)
+-. -...++.+...+.+.++++|+.|-.+++.+....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 210 023677888888999999999999999999776554
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0016 Score=57.42 Aligned_cols=266 Identities=15% Similarity=0.088 Sum_probs=175.1
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhH----HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNK----VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG 90 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~----~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g 90 (314)
.|..++..++.-++..+. +....+.|- ..++.+|.++.++.+.-..+.++-..|...+..++..+..-..|.++.
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 455667778888888777 666666443 344578999999999998899999999999999999999999998877
Q ss_pred cHHHHH--HHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317 91 AAPLLV--QILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 167 (314)
Q Consensus 91 ~l~~Lv--~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 167 (314)
.+.++- ++-..-+.-.|...+..+..+. .+++.....-..|.+..|..=|+...+ .-+..+++.....|+...-.+
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteD-tLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTED-TLVIANCIELVTELAETEHGR 248 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcc-eeehhhHHHHHHHHHHHhhhh
Confidence 666543 3333334456667777777776 555555566667888888777776433 256677888888898888888
Q ss_pred hHHHhccCCHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHH-----HHHHc--CChHHHHHhhhcCCHHHHHHH
Q 021317 168 IAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQ-----LILKE--GAIPGLLRLTVEGTFEAQERA 238 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~-----~i~~~--g~v~~Lv~ll~~~~~~~~~~A 238 (314)
+.+. +.|.|+.+..++...+ +=-+-.++.....+-.. +... ++.+. -++..-.+.+...|+..++.|
T Consensus 249 efla-QeglIdlicnIIsGadsdPfekfralmgfgkffgk---eaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 249 EFLA-QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK---EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc---hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 8888 7999999999986533 22222344443333221 1111 12221 133444456667899999999
Q ss_pred HHHHHHhhcCCchhhc--chh--hhHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHH
Q 021317 239 RTLLDLLRDTPQEKRL--SSS--VLEKIVYDIAARVDGADKA-AETAKRLLQDMVQ 289 (314)
Q Consensus 239 ~~~L~~l~~~~~~~~~--~~~--~~~~lv~~l~~~~~~~~~~-~~~A~~~L~~l~~ 289 (314)
+.++..+.....++.+ ..| ..+.++.... +.+..+ ++.|..+|.++..
T Consensus 325 iDalGilGSnteGadlllkTgppaaehllaraf---dqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAF---DQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHhccCCcchhHHHhccCChHHHHHHHHHh---cccccchHHHHHHHHHHhhc
Confidence 9999999876655322 222 3444543333 333333 4666677776653
No 79
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.78 E-value=6e-05 Score=45.69 Aligned_cols=40 Identities=38% Similarity=0.488 Sum_probs=36.7
Q ss_pred chhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 021317 39 TRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 78 (314)
Q Consensus 39 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~ 78 (314)
++++..+.+.|+++.|+++|.+++++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588899999999999999999899999999999999973
No 80
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.78 E-value=4.8e-05 Score=46.12 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=36.3
Q ss_pred CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317 80 APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 119 (314)
Q Consensus 80 ~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 119 (314)
++++..+.+.|++++|+++|.+++++++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467888899999999999999999999999999999973
No 81
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.73 E-value=0.001 Score=62.73 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=152.6
Q ss_pred HHHHHHhccCCCChhHHhhcCcHHHHHHHh----------ccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHH
Q 021317 70 AAAILTLSAAAPNKPAIAASGAAPLLVQIL----------HSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLIN 138 (314)
Q Consensus 70 ~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL----------~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ 138 (314)
+.+|.-++.++.+...+....++..|.+.- ...++.+...|+.+|+|+. .++..|..+++.|..+.+++
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 567777888888888888777777777765 2347899999999999999 55678888999999999999
Q ss_pred HhhccCC---chHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhc-----------------CCHHHHHHHHH
Q 021317 139 LLKDCKK---YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED-----------------GSLVSTQHAVG 197 (314)
Q Consensus 139 lL~~~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~-----------------~~~~~~~~A~~ 197 (314)
.|+...+ ..++.--.+++|.-++.. .+.+..++.+.+++..+...|.. .+......++.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 9998622 235666788888777654 67788888777888887776632 12345677899
Q ss_pred HHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC---------CHHHHHHHHHHHHHhhcCCch--------------hhc
Q 021317 198 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG---------TFEAQERARTLLDLLRDTPQE--------------KRL 254 (314)
Q Consensus 198 ~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~---------~~~~~~~A~~~L~~l~~~~~~--------------~~~ 254 (314)
.+.|++.+.+.. .. -.....++.|+.++++- ......+++.+|.|+--.... ...
T Consensus 162 llFNit~~~~~~-~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 162 LLFNITLHYPKS-VP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHhhhccCcc-cc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 999998776531 11 12234566665543321 245667788888887321111 112
Q ss_pred chhhhHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHHH-HhHHHHHHHhhhcCCCCCC
Q 021317 255 SSSVLEKIVYDIAARVDGAD--KAAETAKRLLQDMVQRSME-LSMTRIQQRAASSAPSKIP 312 (314)
Q Consensus 255 ~~~~~~~lv~~l~~~~~~~~--~~~~~A~~~L~~l~~~s~~-~~~~~~~~~~~~~~~~~~~ 312 (314)
....+..++..|-...+... +..+...=+|..|.+-+.. +..++..+..-++...|.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~ 300 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRK 300 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcc
Confidence 34456666665553332211 1123343344444433322 6677767766666554443
No 82
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.69 E-value=0.0061 Score=57.61 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=163.5
Q ss_pred cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccC-CCChhHHh-h
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAA-APNKPAIA-A 88 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~-~~~~~~i~-~ 88 (314)
...+++.+...|+++|. ....++..|..+.+.|..+.+++.|+.. +.++.....+.|.-++.. .+.+..+. +
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 45678999999999999 6678899999999999999999999765 688888888988887764 46666666 5
Q ss_pred cCcHHHHHHHhcc-----------------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc-------C
Q 021317 89 SGAAPLLVQILHS-----------------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC-------K 144 (314)
Q Consensus 89 ~g~l~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~-------~ 144 (314)
.+++..++..|.. .+......++.++.|+.........--..+.++.++.++..- .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~ 200 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSP 200 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCC
Confidence 5888888877632 134557788899999985443332212234566666655432 1
Q ss_pred CchHHHHHHHHHHHHhcCC-hhh-------hhHH---HhccCCHHHHHHHhhc----CC----HHHHHHHHHHHHHhhcc
Q 021317 145 KYSKFAEKATALLEILSSS-EEG-------RIAI---TNSDGGILTLVETVED----GS----LVSTQHAVGALLSLCQS 205 (314)
Q Consensus 145 ~~~~~~~~a~~~L~~L~~~-~~~-------~~~i---~~~~g~v~~Lv~ll~~----~~----~~~~~~A~~~L~~L~~~ 205 (314)
+.......+..+|.|+-.. .+. .... ......+..|+.+|.. .. ......-+.+|..++..
T Consensus 201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~ 280 (446)
T PF10165_consen 201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA 280 (446)
T ss_pred cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh
Confidence 2224455666666665211 011 0000 1123456778888753 11 24556677888888877
Q ss_pred CcHHHHHHHHHc----------------CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHH
Q 021317 206 CRDKYRQLILKE----------------GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIV 263 (314)
Q Consensus 206 ~~~~~~~~i~~~----------------g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv 263 (314)
+. ..|+.+... ..-..|++++.+..+.++..+...|+.||+.... +....|---+++
T Consensus 281 ~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~L 356 (446)
T PF10165_consen 281 AR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGFL 356 (446)
T ss_pred cH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHHH
Confidence 53 566666542 3455799999888899999999999999987754 344455444443
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.68 E-value=0.00017 Score=51.76 Aligned_cols=86 Identities=33% Similarity=0.363 Sum_probs=66.9
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
||.|++.| +++++.++..++.+|.++ .+..+++.|+.++++. ++.++..|..+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDE--DPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC---------
Confidence 68899999 888999999999999843 2335799999999765 4488888888887662
Q ss_pred HhccCCHHHHHHHhhcCC-HHHHHHHHHHHH
Q 021317 171 TNSDGGILTLVETVEDGS-LVSTQHAVGALL 200 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~ 200 (314)
....++.|.+++.+++ ..++..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3458889999998754 556888888774
No 84
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.002 Score=64.54 Aligned_cols=201 Identities=16% Similarity=0.123 Sum_probs=144.3
Q ss_pred HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH--HhccCCCChhHHhhcCcHHHHHHHhccC---CHHHHHHHHHHHHHhc
Q 021317 44 KIATAGAIPPLVELLKFQNGTLRELAAAAIL--TLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLS 118 (314)
Q Consensus 44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~--~La~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs 118 (314)
.-..-|+.|.++++|+++..+++-- +..++ -||.++.++..+++.+|=...++.|.++ +++-|.-|+.+|..+.
T Consensus 507 LaLsVGIFPYVLKLLQS~a~ELrpi-LVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv 585 (1387)
T KOG1517|consen 507 LALSVGIFPYVLKLLQSSARELRPI-LVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIV 585 (1387)
T ss_pred hhhccchHHHHHHHhccchHhhhhh-HHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence 3346799999999999988887643 33333 3788889999999888888888888773 5688999999999999
Q ss_pred CC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317 119 TC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 197 (314)
Q Consensus 119 ~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~ 197 (314)
.+ +-.++...+.+.+..-+..|.++. .+-++.-++-+|..|=.+.+..+....+.++.+.|..+|.+..+++|..|+.
T Consensus 586 ~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVF 664 (1387)
T KOG1517|consen 586 RNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVF 664 (1387)
T ss_pred cccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHH
Confidence 65 456777888888888888888853 3355555555666665554444444337899999999999999999999999
Q ss_pred HHHHhhccC---cHHHHHH-----------H-HHcCCh---HHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 198 ALLSLCQSC---RDKYRQL-----------I-LKEGAI---PGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 198 ~L~~L~~~~---~~~~~~~-----------i-~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+|..+-... -++.... + ++.... ..++.+++++++-++..-+-+|..+.
T Consensus 665 ALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 665 ALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 998886632 1111111 1 122222 26777788888888877666766654
No 85
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.0025 Score=60.46 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=147.5
Q ss_pred hcCCcHHHHHHhc---CCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 021317 47 TAGAIPPLVELLK---FQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 122 (314)
Q Consensus 47 ~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 122 (314)
+.+.+|.+-.++. +....+|..|..+...+-.. +... -.-.+|+++.-+.......+..++..|..++...+
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 4555555555554 34566777666665554321 1111 11234555555555566788999999999998877
Q ss_pred CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 123 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 123 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
.+-...-..++|.+.+.|.+..+ +++..+..++..+++.-+|.. |. -.+|.|+..+.+.+..+ ..+...|..=
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~--evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~~t 359 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKP--EVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLGAT 359 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCH--HHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhcce
Confidence 77777778899999999998765 889999999999998877776 32 27889999997765333 3344444333
Q ss_pred hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcC-CCHHHHHHHHH
Q 021317 203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAETAK 281 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~ 281 (314)
++... .+.---+=.+|.|-+-+...+...++.++.+..|++.--+++..-.-.++.|++.+..-. +-.++.|+-|.
T Consensus 360 tFV~~---V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 360 TFVAE---VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred eeeee---ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence 32210 000000112444444555667888899999999999866444444556666666655322 33478899999
Q ss_pred HHHHHHHHH
Q 021317 282 RLLQDMVQR 290 (314)
Q Consensus 282 ~~L~~l~~~ 290 (314)
++|.-+.++
T Consensus 437 rAL~~l~e~ 445 (569)
T KOG1242|consen 437 RALGALLER 445 (569)
T ss_pred HHHHHHHHH
Confidence 988666654
No 86
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0027 Score=59.64 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=151.3
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD- 129 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~- 129 (314)
+|.|-+.+...++..|...+..|..|-.-++-.-.=.-...++-|.+.|.+++++++..+-.+|.++-..-.++-..++
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~ 248 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY 248 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 3333334444577788777777777654444322222356777888889999999998887766666533333333334
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH-HHHHHHHHH---HHHhhcc
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL-VSTQHAVGA---LLSLCQS 205 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~-~~~~~A~~~---L~~L~~~ 205 (314)
...++.++.-+.++.+ .++..|+..+..+..-....--.. -+|++..++.++.+..+ .+++.+... |..++..
T Consensus 249 ~~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred ccchhhccccccCCcH--HHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 4577788888877644 777888888887766544333333 47888888888877655 355554433 4444443
Q ss_pred CcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHH-HHHHHhhcCCchhhcc-hhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317 206 CRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERAR-TLLDLLRDTPQEKRLS-SSVLEKIVYDIAARVDGADKAAETAKR 282 (314)
Q Consensus 206 ~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~-~~L~~l~~~~~~~~~~-~~~~~~lv~~l~~~~~~~~~~~~~A~~ 282 (314)
. ...+. ++ ...++.|.+++.++..+.+-.+. |+.....+++.+-... ......++..|. |.++..-..+-.
T Consensus 326 ~--~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~ 399 (675)
T KOG0212|consen 326 E--RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS---DRSDEVVLLALS 399 (675)
T ss_pred h--hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc---CchhHHHHHHHH
Confidence 2 22222 44 34678888889888888888887 5666666666542222 335555666665 778888999999
Q ss_pred HHHHHHHHHHHHhHH
Q 021317 283 LLQDMVQRSMELSMT 297 (314)
Q Consensus 283 ~L~~l~~~s~~~~~~ 297 (314)
++.++.+.+-+.+-+
T Consensus 400 lla~i~~s~~~~~~~ 414 (675)
T KOG0212|consen 400 LLASICSSSNSPNLR 414 (675)
T ss_pred HHHHHhcCcccccHH
Confidence 999998765554433
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.016 Score=58.52 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHH----hcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIA----TAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~----~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
.++-.+.++.+|. +...+++-...+. -.|-.+.+...+. .+++.++..|+..+..+..+.++-.-+++.|.+..
T Consensus 1738 s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 3556778899999 7777776554443 2366777887776 45889999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK 141 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~ 141 (314)
|+.+|++ -|..+..++.+|..|+++++..+...+.|++..+.+++-
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence 9999976 456789999999999999888777888888777776553
No 88
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0011 Score=63.39 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=112.3
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHH--h--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA--T--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 87 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~--~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 87 (314)
+..+|.+++...++-|..||. .+..+.+.-..=. + .-.+|.++++.+++++.+|..|+.++........ +..+.
T Consensus 133 L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-qal~~ 211 (885)
T KOG2023|consen 133 LCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-QALYV 211 (885)
T ss_pred HHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-HHHHH
Confidence 357889999999999999999 5555443322211 0 1347899999999999999999888776544322 22222
Q ss_pred -hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 88 -ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 88 -~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
--..++.+..+-.+.++++|.+.+.++..|......|-.=-=.++++.++...++.++ .+.-.|+.....++..+..
T Consensus 212 ~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE--~VALEACEFwla~aeqpi~ 289 (885)
T KOG2023|consen 212 HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE--NVALEACEFWLALAEQPIC 289 (885)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch--hHHHHHHHHHHHHhcCcCc
Confidence 2346667777778889999999999999998543222111114577778777777654 6777788888888888755
Q ss_pred hhHHHhc-cCCHHHHHHHh
Q 021317 167 RIAITNS-DGGILTLVETV 184 (314)
Q Consensus 167 ~~~i~~~-~g~v~~Lv~ll 184 (314)
+..+... ...||.|++-|
T Consensus 290 ~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 290 KEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 5544310 23455555433
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0042 Score=59.97 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=70.4
Q ss_pred eeccccCCHHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcC
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASG 90 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g 90 (314)
+.++++..+-+|.+|+..+. .+- -.+.-|. .+|.|++-|.++++.++..|+.++|.||. ++.|.-.+.
T Consensus 150 ~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA--- 220 (877)
T KOG1059|consen 150 FTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA--- 220 (877)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc---
Confidence 46778888999999988877 333 3333333 35889999999999999999999999997 455544442
Q ss_pred cHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc
Q 021317 91 AAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 142 (314)
Q Consensus 91 ~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~ 142 (314)
|.+..+|.+. +-=+....+....+|+.-++ + .....+++|.+++.+
T Consensus 221 --P~ffkllttSsNNWmLIKiiKLF~aLtplEP---R-LgKKLieplt~li~s 267 (877)
T KOG1059|consen 221 --PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---R-LGKKLIEPITELMES 267 (877)
T ss_pred --HHHHHHHhccCCCeehHHHHHHHhhccccCc---h-hhhhhhhHHHHHHHh
Confidence 5555666543 22233444445555553221 0 112245555555544
No 90
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.44 E-value=0.0028 Score=50.55 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=95.4
Q ss_pred hhhhhcCCcHHHHHHhhccCC----chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC--CHHHHHHHHHH
Q 021317 125 SPILDATAVPPLINLLKDCKK----YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGA 198 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~--~~~~~~~A~~~ 198 (314)
..+...|++..|++++.++.. .......++.++..|-.+...-.... +...|..++.++... +..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356778999999999999864 34666778888888887765555555 566788888888653 47899999999
Q ss_pred HHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 199 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 199 L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
|-++..+++ ..-..+.++=-++.|+..++..++.+|.+|.+++..|-.
T Consensus 84 LEs~Vl~S~-~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSP-KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCH-HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999998764 445555566679999999999999999999998877643
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.44 E-value=0.00016 Score=47.13 Aligned_cols=55 Identities=25% Similarity=0.210 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 021317 63 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 117 (314)
Q Consensus 63 ~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nL 117 (314)
+.+|..|+.+|++++........-.....++.|+.+|.++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887655444445678999999999999999999999999875
No 92
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.027 Score=54.65 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=138.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhc
Q 021317 53 PLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDA 130 (314)
Q Consensus 53 ~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~ 130 (314)
-++.+|.+..+-+|..|..++..+.. .++. =.-.+|.|++-|+++|+.++..|..+++.|+ .+|.|.-.
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~---- 218 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ---- 218 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc----
Confidence 45677788888899999888888654 2221 1235689999999999999999999999999 56656443
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHHHHHHH--HHhhccCc
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAVGAL--LSLCQSCR 207 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L--~~L~~~~~ 207 (314)
.-|.+.++|-+.+.+.- .-..+.++.+|+.-.+- +. ...++.|..++.+.+ ..+.-.|..+. .+++.+.+
T Consensus 219 -LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPR---Lg--KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 219 -LAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPR---LG--KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -ccHHHHHHHhccCCCee-hHHHHHHHhhccccCch---hh--hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 34677888876544322 34566666677665332 22 346778999998755 23333343333 14444322
Q ss_pred HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 287 (314)
Q Consensus 208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l 287 (314)
+...... -+++.|--++.+.|+..+--+..++..+..-.+. .+++ -. .++.... .|.++-.+-+|-.+|--|
T Consensus 292 d~~asiq---LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa-~k-dlIlrcL--~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 292 DHSASIQ---LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQA-HK-DLILRCL--DDKDESIRLRALDLLYGM 363 (877)
T ss_pred CcHHHHH---HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHH-hH-HHHHHHh--ccCCchhHHHHHHHHHHH
Confidence 2111111 2577788888899999999999999998864432 1111 11 1222222 355566777777777777
Q ss_pred HHHHHHHhHHHHHH
Q 021317 288 VQRSMELSMTRIQQ 301 (314)
Q Consensus 288 ~~~s~~~~~~~~~~ 301 (314)
+. +.|...|++
T Consensus 364 Vs---kkNl~eIVk 374 (877)
T KOG1059|consen 364 VS---KKNLMEIVK 374 (877)
T ss_pred hh---hhhHHHHHH
Confidence 74 445444443
No 93
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00042 Score=64.60 Aligned_cols=139 Identities=17% Similarity=0.087 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhccCCHHHHHHHhh
Q 021317 108 VDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVE 185 (314)
Q Consensus 108 ~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~v~~Lv~ll~ 185 (314)
..++.+|.+++.+ .-.|.-+.+..+.++|+++|+.+.. .+.-.++..++|+..--++ +..+. +.|.+..|+.++.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--mi~~~~t~~icn~vv~fsnL~~~fL-~~~iIdvl~~~v~ 483 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--MIEFPDTIDICNKVVPFSNLGAGFL-EKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--eeeccchhhhhheeeeccchHHHHH-HhhHHHHHHHHhh
Confidence 3445556666643 2356667778899999999988544 4555678889998877555 55666 7999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 186 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 186 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+.+..+|.+..|.|+++..+++++-+-.+....++..++.+..+.+-.+|+.+..+|+|+....
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 8889999999999999988876544556777788999999999999999999999999997644
No 94
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.36 E-value=0.00077 Score=49.65 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh--hcCCHHHHHHHHHHHHHhhcCCch
Q 021317 191 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT--VEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 191 ~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll--~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
.+...+.+++|||..++ .++..+++.|+++.++... .+.+|.+++.|.+++++|+..+++
T Consensus 2 ~K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred cHHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 35678899999998875 8899999999999999854 456799999999999999998854
No 95
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.022 Score=54.23 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 98 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l 98 (314)
....+|+.|..+.. ....-+..... -.+|.++.-+.......+..++..|+.++.+...+-...-+..+|.+.+.
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev 303 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV 303 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH
Confidence 45667777777665 33222222111 12333443333335567788899999999888777777788999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCC--
Q 021317 99 LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGG-- 176 (314)
Q Consensus 99 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~-- 176 (314)
|-+..++++..+..+|..++.--+|.. |.. .+|.|++.+.++.. . ...+...| ....-.. . + +.-.
T Consensus 304 l~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~dp~~--~-~~e~~~~L---~~ttFV~-~-V-~~psLa 371 (569)
T KOG1242|consen 304 LWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALADPSC--Y-TPECLDSL---GATTFVA-E-V-DAPSLA 371 (569)
T ss_pred HccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcCccc--c-hHHHHHhh---cceeeee-e-e-cchhHH
Confidence 999999999999999999997766665 222 57888888887652 1 12333333 2221110 0 1 1223
Q ss_pred --HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 177 --ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 177 --v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+|.|-+-+...+...+..++.+.+|+|.--++ ...+.. .-.+|-|-..+.+..|++|.-+..+|..+-+
T Consensus 372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 34444445556777889999999999986532 222222 1234444445555679999999999977654
No 96
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.34 E-value=0.00066 Score=44.15 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 189 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
+.+|..|+++|.+++...++..+. ....+++.|+.+++++++.++.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468899999999998777543333 3356899999999999999999999999865
No 97
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.27 E-value=0.0017 Score=47.87 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 150 AEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 150 ~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
+.....+|.||+.. +.++..+. +.|+++.++.... +.+|-++++|..++.||+..++ ++++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr-~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~-eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVR-ELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP-ENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-HcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH-HHHHHHHh
Confidence 34577889999877 56677776 7899999999764 4569999999999999999985 77877765
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0043 Score=59.38 Aligned_cols=180 Identities=20% Similarity=0.185 Sum_probs=115.9
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccC-----C-C-ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAA-----A-P-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--- 120 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-----~-~-~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--- 120 (314)
....++++.+.+.++|..|+..+.-.+.- + + +..... -.++..+...+++.+-.+|..|+.+|+.+-..
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 45678888888899998887666554431 1 1 111111 23566777777777777777777666654320
Q ss_pred ------------------------------------------------CCCchhhhhcCCcHHHHHHhhccCCchHHHHH
Q 021317 121 ------------------------------------------------KENSSPILDATAVPPLINLLKDCKKYSKFAEK 152 (314)
Q Consensus 121 ------------------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~ 152 (314)
++....|+..|+=-.++.-+.+.- -+++.+
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf--~EVR~A 392 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF--YEVRRA 392 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHH--HHHHHH
Confidence 111223344444455555555432 267888
Q ss_pred HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCH
Q 021317 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 232 (314)
Q Consensus 153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~ 232 (314)
|...++.|+.....- . ..++.-|+.++.+....+|..|..+|..++.+- .. ++.-++.++..+.+.++
T Consensus 393 AV~Sl~~La~ssP~F---A--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--~i-----~eeql~~il~~L~D~s~ 460 (823)
T KOG2259|consen 393 AVASLCSLATSSPGF---A--VRALDFLVDMFNDEIEVVRLKAIFALTMISVHL--AI-----REEQLRQILESLEDRSV 460 (823)
T ss_pred HHHHHHHHHcCCCCc---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--ee-----cHHHHHHHHHHHHhcCH
Confidence 889898888753321 1 235678999998888999999999999998542 22 22346777788888888
Q ss_pred HHHHHHHHHHHHh
Q 021317 233 EAQERARTLLDLL 245 (314)
Q Consensus 233 ~~~~~A~~~L~~l 245 (314)
.++++.-.+|.+.
T Consensus 461 dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 461 DVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHhc
Confidence 9988877777664
No 99
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.18 E-value=0.034 Score=47.92 Aligned_cols=187 Identities=17% Similarity=0.108 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhc-------cCC-----HHHHHHHHHHHHHhcCCCCCchhh
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILH-------SGS-----VQGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~-------~~~-----~~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
+++.|+.|+.-|..--..-++-..+. ..|.+..|++=.- .++ ..-..+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 57778766555544333223333333 3466666654332 221 234577888888999999999999
Q ss_pred hhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 128 LDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
+++...-.|...|...+.. +.++-.++++++.|... .+....+. +...+|..++.|..|+...+..|..++..+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999888888888765432 35667889999999875 44556666 789999999999999998899999998887
Q ss_pred hccCcHHHHHHH-------HH-cCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317 203 CQSCRDKYRQLI-------LK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 203 ~~~~~~~~~~~i-------~~-~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
-.++ .+-+.+ .. ..++..++. +.+..+++.-++.+++-..|+.++..
T Consensus 167 L~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 167 LLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred Hcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 6543 222222 21 234455554 56677999999999999999998853
No 100
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0033 Score=58.82 Aligned_cols=180 Identities=10% Similarity=0.029 Sum_probs=131.0
Q ss_pred hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHH
Q 021317 34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT 112 (314)
Q Consensus 34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~ 112 (314)
+...-.--|.-+.+..++++|++.|++|+--+..-+...++|+.. ...-+..+.+.|.+..|++++.+.+..++.+..|
T Consensus 416 ~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~w 495 (743)
T COG5369 416 MSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEW 495 (743)
T ss_pred hhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchh
Confidence 444445566677788899999999998777677778889999765 4566788889999999999999999999999999
Q ss_pred HHHHhcCCCCC--chhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-h---hhhHHHh---ccCCHHHHHHH
Q 021317 113 ALHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-E---GRIAITN---SDGGILTLVET 183 (314)
Q Consensus 113 ~L~nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~---~~~~i~~---~~g~v~~Lv~l 183 (314)
+|+.+..+.++ +-.....-++..++++..++. ..++..++.+|.|+..+. . .+..... ..=....|+..
T Consensus 496 vlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k 573 (743)
T COG5369 496 VLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDK 573 (743)
T ss_pred hhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHH
Confidence 99999966543 445666778899999998753 388899999999997642 2 2222220 00023356666
Q ss_pred hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 184 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 184 l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
+...++-..+..+-.|.+++..+. +.+..+.+
T Consensus 574 ~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~ 605 (743)
T COG5369 574 YEENNPMEILEGCYILVRNAACDD-TLDYIVQS 605 (743)
T ss_pred HHhcCchhhhhhHHHHHHHHhccc-hHHHHHHh
Confidence 666666666677888888887763 44444443
No 101
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.049 Score=48.34 Aligned_cols=231 Identities=15% Similarity=0.041 Sum_probs=150.4
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHH--HHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPL--VELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAP 93 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~L--v~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~ 93 (314)
+-.+|.++-..|...+.-.+..+..-..+.++.....+ .++-...+.-.|......+..+.. ++........+|.+.
T Consensus 137 IggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld 216 (524)
T KOG4413|consen 137 IGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD 216 (524)
T ss_pred HcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence 34556777777777777445556666666666555443 222223345566667777777655 456677777889888
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHH----HHHHHhcCChhhhh
Q 021317 94 LLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT----ALLEILSSSEEGRI 168 (314)
Q Consensus 94 ~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~----~~L~~L~~~~~~~~ 168 (314)
.|..-|.. .+.-++.+++.....|+..+-.++.+.+.|.|+.+..++...+.++=-.-.++ ..+.+.+..+-.-+
T Consensus 217 lLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee 296 (524)
T KOG4413|consen 217 LLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE 296 (524)
T ss_pred HHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence 88887776 57778899999999999988899999999999999999987554321111122 22333332221111
Q ss_pred HHHh-ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC--ChHHHHHhhhcCC-HHHHHHHHHHHHH
Q 021317 169 AITN-SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG--AIPGLLRLTVEGT-FEAQERARTLLDL 244 (314)
Q Consensus 169 ~i~~-~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g--~v~~Lv~ll~~~~-~~~~~~A~~~L~~ 244 (314)
+++. -.-+|+..++++...++..++.|..++..|.+.. +..+.+...| ..+.++.-.-+.+ ..-++.+..+|.+
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaa 374 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAA 374 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 1110 0125666777788888999999999999998776 5577777755 3455554333333 4446677778888
Q ss_pred hhcCC
Q 021317 245 LRDTP 249 (314)
Q Consensus 245 l~~~~ 249 (314)
++..-
T Consensus 375 Iagel 379 (524)
T KOG4413|consen 375 IAGEL 379 (524)
T ss_pred hhccc
Confidence 87533
No 102
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.14 Score=48.83 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=123.8
Q ss_pred cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC-----
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG----- 90 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g----- 90 (314)
|++..+.++..+.+++. ++.++- -..+.+ ..|+.|-.+|+++....|..|.++|..|+.....+.......
T Consensus 273 ls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI 349 (898)
T COG5240 273 LSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI 349 (898)
T ss_pred hcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh
Confidence 34445677777777766 443331 112222 346677788889999999999999999998543333222211
Q ss_pred -------cHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317 91 -------AAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 91 -------~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 161 (314)
..=++..+|+.+..+........|-+...+ +.-+..+++ ++..|.-...+. ...-+..|.+.-
T Consensus 350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id--a~rsLsl~Fp~k------~~s~l~FL~~~L 421 (898)
T COG5240 350 SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID--ALRSLSLLFPSK------KLSYLDFLGSSL 421 (898)
T ss_pred hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH--HHHHHHhhCcHH------HHHHHHHHHHHH
Confidence 111333445555444444444444444322 111221111 222221111110 111222222211
Q ss_pred C---ChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-------cC--------ChHHH
Q 021317 162 S---SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-------EG--------AIPGL 223 (314)
Q Consensus 162 ~---~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-------~g--------~v~~L 223 (314)
. .-+.++.+ |+.+..+++. .|.-+|.|+..|+..-.++ ++-+..++ +| .+..+
T Consensus 422 ~~eGg~eFK~~~------Vdaisd~~~~-~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 422 LQEGGLEFKKYM------VDAISDAMEN-DPDSKERALEVLCTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HhcccchHHHHH------HHHHHHHHhh-CchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 1 11222222 3345555543 3455677776666654443 22222221 11 23333
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 224 LRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 224 v~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
..=+--++.-++..|+.+|..++-.-..+.. ..-++.++.... .|.++..+++|.-+|++|.
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-~~sv~~~lkRcl--nD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFALNISDVVS-PQSVENALKRCL--NDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCcccccc-HHHHHHHHHHHh--hcccHHHHHHHHHHHHhhh
Confidence 3322225677888888888887755544332 333333444444 5777889999999999987
No 103
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.97 E-value=0.065 Score=45.62 Aligned_cols=150 Identities=16% Similarity=0.052 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC--hhHHhhcCcHH
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAAPN--KPAIAASGAAP 93 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~ 93 (314)
+..-...++.-+.-...+++.|..+.++..--.|-.+|.. +.+-.|..++.+++.|..+++. -..+.+.++||
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3444455555555555678999999998876667777743 2466888999999999987653 33445889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 165 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 165 (314)
..++.++.+++..+..|..++..+-.++..-..+-+ .-.+..++.-+.+ .+...+...+.++..+|+.++.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~-~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS-MPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999988876655544 1123333333333 2344788889999999999888
Q ss_pred hhhHHH
Q 021317 166 GRIAIT 171 (314)
Q Consensus 166 ~~~~i~ 171 (314)
.|..+.
T Consensus 251 ar~aL~ 256 (293)
T KOG3036|consen 251 ARAALR 256 (293)
T ss_pred HHHHHH
Confidence 877765
No 104
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.88 E-value=0.076 Score=45.22 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc---CCchHHHHHHHHHHHHhcCCh--hhhhHHHhccCCHH
Q 021317 104 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSE--EGRIAITNSDGGIL 178 (314)
Q Consensus 104 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~v~ 178 (314)
..-..+++..|..++..++.|..++++..--.+-.+|..+ .+.+-++-.+++++..|..++ +....+. ..++||
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence 3456788999999999999999999987666666666543 233467788999999998663 3455556 799999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcH-----HHHHHHHH-cCChHHHH-HhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRD-----KYRQLILK-EGAIPGLL-RLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~i~~-~g~v~~Lv-~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
.+++.+..|+..-+..|..++..+-.++.+ ..-+.+-. .-.+..++ ++.+.++++.-++.+++.-+|++.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999887655421 11111211 12344444 35667899999999999999998875
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.029 Score=54.35 Aligned_cols=219 Identities=15% Similarity=0.091 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-C-CChhHHhhcCcHHHHHH
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-A-PNKPAIAASGAAPLLVQ 97 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~-~~~~~i~~~g~l~~Lv~ 97 (314)
.+-++++|..+++ +...+++- +-..+..+.++.+|.+.+-.+...+...+--|+.. + +.+.++. -++..|-+
T Consensus 161 ~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~r 235 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSR 235 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHH
Confidence 3556777777766 77776653 22345678888888776665555666666666653 2 2232221 11112222
Q ss_pred Hhcc-------------CCHHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHH----HH-HHHHH
Q 021317 98 ILHS-------------GSVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFA----EK-ATALL 157 (314)
Q Consensus 98 lL~~-------------~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~----~~-a~~~L 157 (314)
.... +.|=+....+++|.+.-.-++ .+..+.+ +++.++...+.+....++. .+ .+--.
T Consensus 236 iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFea 313 (938)
T KOG1077|consen 236 IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (938)
T ss_pred HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence 1111 245566667777766643222 3333322 3444444444221111111 11 11111
Q ss_pred HHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHH
Q 021317 158 EILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQ 235 (314)
Q Consensus 158 ~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~ 235 (314)
-+|+.+ ++....+. .++..|-.++.+....+|--|+..++.|+..... .+++... .+.++..++ ..|..++
T Consensus 314 I~l~~h~D~e~~ll~---~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLS---RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHcCCcHHHHH---HHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHH
Confidence 244444 33333333 2677778888777778888888888888776432 3344333 566666666 5677888
Q ss_pred HHHHHHHHHhhcCCchhh
Q 021317 236 ERARTLLDLLRDTPQEKR 253 (314)
Q Consensus 236 ~~A~~~L~~l~~~~~~~~ 253 (314)
+.|+.+|..+|+.++.+.
T Consensus 387 rravDLLY~mcD~~Nak~ 404 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVSNAKQ 404 (938)
T ss_pred HHHHHHHHHHhchhhHHH
Confidence 888888888887665443
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.86 E-value=0.051 Score=51.99 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=99.1
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCC---ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAP---NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~---~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
|+..+.+|++..++++.+|+.....|+.--. ....+..-|.+ |.+-|....+++.-..+.+++.+......+..-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 5567788899999999999998888865211 11112222221 233344567888877777777776544332211
Q ss_pred -hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh----hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 128 -LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG----RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 128 -~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~----~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
--.|++|.|..+|++... ++..+....++.+|...+. |+.+- +-=.|+.+|++.+.+++.+|...+..+
T Consensus 684 pPi~~ilP~ltPILrnkh~--Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 684 PPISGILPSLTPILRNKHQ--KVVANTIALVGTICMNSPEYIGVREWMR----ICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred CchhhccccccHhhhhhhH--HHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 124789999999998644 8888888888888776433 44443 333678888888899999999988888
Q ss_pred hcc
Q 021317 203 CQS 205 (314)
Q Consensus 203 ~~~ 205 (314)
+..
T Consensus 758 s~a 760 (975)
T COG5181 758 SRA 760 (975)
T ss_pred Hhh
Confidence 753
No 107
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.089 Score=51.74 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 021317 18 TYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 78 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~ 78 (314)
++++--++-.|+.++......+--| +..|-+-+++++.++-++..|+.+...+-.
T Consensus 117 ~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~ir 171 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIR 171 (866)
T ss_pred cCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3444445555555555333322222 233556667777778888877777776554
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.14 Score=47.25 Aligned_cols=232 Identities=12% Similarity=0.003 Sum_probs=156.4
Q ss_pred eeccccCCHHHHHHHHHHhH-hhcc-----Cchh----HHHHHhcCCcHHHHHHhcCCCHHH------HHHHHHHHHHhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLS-----KTRN----KVKIATAGAIPPLVELLKFQNGTL------RELAAAAILTLS 77 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~-----~~~~----~~~l~~~g~v~~Lv~lL~~~~~~~------~~~a~~~L~~La 77 (314)
+.+|.-.|..+-...+.-+. ++.. +++. -..+++.++++.|++-+..-+.++ ...+...+-|+.
T Consensus 131 L~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv 210 (536)
T KOG2734|consen 131 LELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLV 210 (536)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH
Confidence 45677777777777777666 4432 2222 245567888999988775434333 345566777777
Q ss_pred cC-CCChhHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhc----c---CCc
Q 021317 78 AA-APNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKD----C---KKY 146 (314)
Q Consensus 78 ~~-~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~----~---~~~ 146 (314)
.. ++....+++.|.+.-|+.-+... -..-+..|..+|.-+-.+. +++.......++..++.-+.- + .++
T Consensus 211 ~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E 290 (536)
T KOG2734|consen 211 EVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDE 290 (536)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCH
Confidence 65 46677777888777766644432 3456788888888888554 588888888889888877632 1 123
Q ss_pred hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHH
Q 021317 147 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLR 225 (314)
Q Consensus 147 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~ 225 (314)
.++.++-..+|+.+-..+.+|..+. ...+++...-+++. ....+..++.+|-....+.+. .++..+++.+|+..+..
T Consensus 291 ~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~ 368 (536)
T KOG2734|consen 291 EEMMENLFDCLCSLLMAPANRERFL-KGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFP 368 (536)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhhh-ccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence 4677788888888888899999999 56677766666665 445578899999888776532 67888999888888776
Q ss_pred -hhhcC--------C-HHHHHHHHHHHHHhhc
Q 021317 226 -LTVEG--------T-FEAQERARTLLDLLRD 247 (314)
Q Consensus 226 -ll~~~--------~-~~~~~~A~~~L~~l~~ 247 (314)
+++.. + ...-++-+.+|+.+-.
T Consensus 369 ~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 369 LFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 44222 2 3334555556655543
No 109
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.77 E-value=0.2 Score=50.41 Aligned_cols=241 Identities=13% Similarity=0.152 Sum_probs=144.6
Q ss_pred HHHhcCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc----cCC----HHHHHHH
Q 021317 44 KIATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGS----VQGRVDA 110 (314)
Q Consensus 44 ~l~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~----~~~----~~~~~~a 110 (314)
.+.+.|++..+++++.+- ........+..|...+....||..+.+.|+++.|+..|. .+. +.+-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 445789999999999652 334555566677777778999999999999999998874 333 5666677
Q ss_pred HHHHHHhcCCCCC---c--hhhhhc--------CCcHHHHHHhhccC--CchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 111 VTALHYLSTCKEN---S--SPILDA--------TAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 111 ~~~L~nLs~~~~~---~--~~i~~~--------g~i~~Lv~lL~~~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
+.++..|...... . ...... .-+..+++.+.+.. .++.+....+++|-+|+.+.+.+.....+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-- 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-- 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence 7666666532211 0 111111 12555666665532 23578888999999999887665544311
Q ss_pred CHHHHHHHhhcC---CHHHHHHHHHHHHHhhccC-----cHHHHHHHHHcCChHHHHHhhhcCCH--------HHH----
Q 021317 176 GILTLVETVEDG---SLVSTQHAVGALLSLCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTF--------EAQ---- 235 (314)
Q Consensus 176 ~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~-----~~~~~~~i~~~g~v~~Lv~ll~~~~~--------~~~---- 235 (314)
.+...+++=.-+ ++.- ...+.+++.++..- .+..|+.+++.|.++..++++...-| +-+
T Consensus 270 ~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 270 HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 233333211111 1111 23355555555421 24789999999999999998765433 222
Q ss_pred ----HHHHHHHHHhhcCCc--hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 236 ----ERARTLLDLLRDTPQ--EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 236 ----~~A~~~L~~l~~~~~--~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
..+...|+-|+.+.. +..+....+ ++++.|. ++.++.+....|-.+|..+..
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE-qvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE-QVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh-cCCCccchHHHHHHHHHHHhc
Confidence 234566666776543 233444455 3556665 333345566666666666554
No 110
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.76 E-value=0.038 Score=52.11 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=117.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCchhh
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV----QGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~----~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
..+.+.+.+++...+..+...|..++.+......+....++..|.++..+++. .....++.++..|-...-.....
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 46788889998888888999999999988888888889999999999998854 55566666666655433333333
Q ss_pred hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 207 (314)
+...++.....+..-...+..+...|+..|-++..+.......+.+.--+..|+.++...+..++..|...+-.+....+
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence 33334444444443322233556789999999888877555555477789999999999998998888888877766555
Q ss_pred HHHHHHHHH
Q 021317 208 DKYRQLILK 216 (314)
Q Consensus 208 ~~~~~~i~~ 216 (314)
++-|..+.+
T Consensus 246 ~~~R~~~~~ 254 (713)
T KOG2999|consen 246 DDKRFEMAK 254 (713)
T ss_pred hHHHHHHHH
Confidence 554555544
No 111
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.73 E-value=0.0056 Score=50.81 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHhccCCCChhHHhh----------------cCcHHHHHHHhcc------CCHHHHHHHHHHHHHh
Q 021317 60 FQNGTLRELAAAAILTLSAAAPNKPAIAA----------------SGAAPLLVQILHS------GSVQGRVDAVTALHYL 117 (314)
Q Consensus 60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~----------------~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nL 117 (314)
+++...-..++..|.||+..+.....+.+ ...+..|+.++.. ....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34445566778899999988776664442 2367778887766 2334567888999999
Q ss_pred cCCCCCchhhhhc--CC--cHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 118 STCKENSSPILDA--TA--VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 118 s~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
+..++.|..+.+. +. +..|+..+++.+. ..+..++++|.|+|-+.+....+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~--iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV--IRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH--HHHHHHHHHHHHhhccHhHHHHhcC
Confidence 9999999999973 44 6777777777633 5567899999999999988888874
No 112
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.72 E-value=0.057 Score=46.57 Aligned_cols=220 Identities=16% Similarity=0.129 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHh-------cCCC--HH--H-HHHHHHHHHHhccCCCChhH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELL-------KFQN--GT--L-RELAAAAILTLSAAAPNKPA 85 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL-------~~~~--~~--~-~~~a~~~L~~La~~~~~~~~ 85 (314)
-+++.|+.|+..|. .-...++-.-.+- ..|.+..|++=. ..++ +. - .-.|+..|..+|.+++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 46788999999888 4444444433343 457777776533 2221 21 1 22455566678899999999
Q ss_pred HhhcCcHHHHHHHhccC-----CHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317 86 IAASGAAPLLVQILHSG-----SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158 (314)
Q Consensus 86 i~~~g~l~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~ 158 (314)
+.++...-.|-..|+.. -+.+|-.++++++.|...+ +....+.+.+.+|..++.|+.|++ --+..|+-++.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gse--lSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSE--LSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-H--HHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 99988766666666543 2567899999999999644 345567788999999999999865 33445777777
Q ss_pred HhcCChhhhhHHHhccC-------CHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH--h--
Q 021317 159 ILSSSEEGRIAITNSDG-------GILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR--L-- 226 (314)
Q Consensus 159 ~L~~~~~~~~~i~~~~g-------~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~--l-- 226 (314)
.+-.++.+-..+.+... ++..++.. ..+.++.+.....++-.-|+.+. ..|+++.. .+|..++ .
T Consensus 165 KIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~aL~~--~LP~~Lrd~~f~ 240 (262)
T PF04078_consen 165 KILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREALRQ--CLPDQLRDGTFS 240 (262)
T ss_dssp HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHHHHH--HS-GGGTSSTTT
T ss_pred HHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHHHHH--hCcHHHhcHHHH
Confidence 76666666444432222 22333332 24567888899999999999876 45777765 3333222 1
Q ss_pred -hhcCCHHHHHHHHHHHHHh
Q 021317 227 -TVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 227 -l~~~~~~~~~~A~~~L~~l 245 (314)
+-.+|+..++.=..++.|+
T Consensus 241 ~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 241 NILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TGGCS-HHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 1124666666555566655
No 113
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.2 Score=49.42 Aligned_cols=263 Identities=12% Similarity=0.110 Sum_probs=145.3
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAA 92 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l 92 (314)
.+++..++.++++|+.|.. .....++--.. +++....+|.+.+..+...++..+..++.. ++.-....+ .+
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~ 221 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LV 221 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HH
Confidence 5678889999999999877 66666653322 233444555444444444444444444432 222222221 33
Q ss_pred HHHHHHhcc---------------CCHHHHHHHHHHHHHhcCCCCC------------------chhhhh---cCCcHHH
Q 021317 93 PLLVQILHS---------------GSVQGRVDAVTALHYLSTCKEN------------------SSPILD---ATAVPPL 136 (314)
Q Consensus 93 ~~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~------------------~~~i~~---~g~i~~L 136 (314)
+.++..|+. ++|-++...+..|+-|-.++.. -..+.+ ..++..+
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 444444321 1344555555555555443322 111221 1222333
Q ss_pred HHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHH---------HhccCCH----HHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 137 INLLKDCKKYSKFAEKATALLEILSSSEEG-RIAI---------TNSDGGI----LTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 137 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i---------~~~~g~v----~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
+.+. ++..+++.|..+|..+-.++++ .+.+ -.+..++ ..++.+|++.+..++..|+..+..|
T Consensus 302 ~~I~----~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 302 MDIR----SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred Hhcc----CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 2222 2336778888888876666544 2221 1123333 3678888888889999999999888
Q ss_pred hccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317 203 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK 281 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~ 281 (314)
...+ . .+. .++.|+.++...++..+...+.-+..+++ ..+.+.- .++.....+. ...+-.++.+.
T Consensus 378 vn~~--N-v~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W---~idtml~Vl~---~aG~~V~~dv~ 443 (866)
T KOG1062|consen 378 VNES--N-VRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW---HIDTMLKVLK---TAGDFVNDDVV 443 (866)
T ss_pred hccc--c-HHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh---HHHHHHHHHH---hcccccchhhH
Confidence 8654 2 333 35668888888888888877776666654 3333222 2333333343 23356677777
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 021317 282 RLLQDMVQRSMELSMTRIQQR 302 (314)
Q Consensus 282 ~~L~~l~~~s~~~~~~~~~~~ 302 (314)
..+-.+...++.......++|
T Consensus 444 ~nll~LIa~~~~e~~~y~~~r 464 (866)
T KOG1062|consen 444 NNLLRLIANAFQELHEYAVLR 464 (866)
T ss_pred HHHHHHHhcCCcchhhHHHHH
Confidence 777777776755555555544
No 114
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.70 E-value=0.12 Score=42.39 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH-HHHHHH
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLVQI 98 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l-~~Lv~l 98 (314)
|+.+|..++.++. ++...+.. ++ ..+|.+...|.++++.+|..|+.+|..|...+- +.-.|-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence 5778888999888 77666543 22 347889999999999999999999999876532 2222333 788889
Q ss_pred hccCCHHHHHHHHHHHHHhcCC
Q 021317 99 LHSGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 99 L~~~~~~~~~~a~~~L~nLs~~ 120 (314)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999865
No 115
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.03 Score=54.91 Aligned_cols=209 Identities=15% Similarity=0.061 Sum_probs=142.9
Q ss_pred hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHH-HhccCCCChhHHhhcCcHHHHHHHhccCC-HHHHHHHH
Q 021317 34 WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL-TLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAV 111 (314)
Q Consensus 34 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~-~La~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~~~~a~ 111 (314)
+++....-+...++.|+...|+.+.....+..+.....+|. .++.. .. .....++++.+.++... ..-...++
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~----~~~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GE----RSYEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CC----chhhhhhhhcchhhhhHHHHHHHHHH
Confidence 33444455566778999999999998888888888888887 22221 11 12345666666665442 22346778
Q ss_pred HHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc-cCCHHHHHHHhhcCCH
Q 021317 112 TALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVEDGSL 189 (314)
Q Consensus 112 ~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~v~~Lv~ll~~~~~ 189 (314)
.++.||+. ++..|..+.+.-.++.+-.++.+.++ ..+..++..+.||..++......+.+ ...++.....+.....
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E 641 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEENP--ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE 641 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh
Confidence 89999994 55677788887677766666655443 67888999999999988765554433 5667777777766666
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 190 VSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
.....+++++..++.... .....+.+ ..+...++.++.++++.+|........|+.+...
T Consensus 642 ~~~lA~a~a~a~I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ 702 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF 702 (748)
T ss_pred HHhhhccccccchhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH
Confidence 667777777776665543 23332333 5678888999999999999999887777655443
No 116
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.66 E-value=0.056 Score=52.80 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=96.0
Q ss_pred eeccccCCHHHHHHHHHHhH-hh---ccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQ---LSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAA 88 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~---~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~ 88 (314)
...|.+..+.++++|+..+. ++ ....+ -..+...|+ .|.+-|....+++.-..+.+++.+..... .+..---
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~e-e~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 35678889999999988765 22 22211 134455564 36777877788887776666666654321 1111123
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~ 162 (314)
.+.+|.|..+|++....++++++..++.++....-.....+ ..+--.|+++|++.+. .++.+|...+..++.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK--~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK--EIRRAAVNTFGYIAK 954 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHH
Confidence 68899999999999999999999999999965443333333 1233457788888655 677788877776654
No 117
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.07 Score=51.45 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK 252 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 252 (314)
.+|+-..++.-|.+.--++|+.|...|+.|+...|. ... -.+.-|+.++.++...++..|..+|+.++.+-
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--- 441 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVHL--- 441 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---
Confidence 466667777777777788999999999999987663 111 15677888999999999999999999999874
Q ss_pred hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
.+....++.++..|. |.+.++++....+|++..
T Consensus 442 ~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 442 AIREEQLRQILESLE---DRSVDVREALRELLKNAR 474 (823)
T ss_pred eecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcC
Confidence 233334444433333 555666776666666543
No 118
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.12 Score=49.21 Aligned_cols=261 Identities=13% Similarity=0.061 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhc----CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHH
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATA----GAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLL 95 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~----g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~L 95 (314)
+..+|..|+.+|..... .-+..+... -..+..++.-+.++.+++..|..+|..+-.- -..-..+.+.-....+
T Consensus 191 ~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 191 TSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777652111 111222211 2233445555677899999999999987542 2222233444445566
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCC--------------CC-Cchhhh--hcCCcHHHHHHhhc------cCCchHHHHH
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTC--------------KE-NSSPIL--DATAVPPLINLLKD------CKKYSKFAEK 152 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~--------------~~-~~~~i~--~~g~i~~Lv~lL~~------~~~~~~~~~~ 152 (314)
.+.+++++.++...+...-..++.. |. |..... -..++|.|+.+|.. +++| .....
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW-n~sma 347 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW-NPSMA 347 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc-chhhh
Confidence 6778899999888887655455431 11 111111 13578999999965 2223 44556
Q ss_pred HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCH
Q 021317 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 232 (314)
Q Consensus 153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~ 232 (314)
|.++|.-.+....+ .++ +. ....+-.-+++++-.-++.|+.++..+-.+...+.+..++ ..++|.+...+.+..-
T Consensus 348 A~sCLqlfaq~~gd--~i~-~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l 422 (858)
T COG5215 348 ASSCLQLFAQLKGD--KIM-RP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCL 422 (858)
T ss_pred HHHHHHHHHHHhhh--HhH-HH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhccccee
Confidence 66666544332211 122 11 1222222345556666889999999987765444444444 4678888888888888
Q ss_pred HHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHH
Q 021317 233 EAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 233 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+++.++|++..++++-..-.-..|-+.+.+....... |. ++..-.-.+..-+|+.|
T Consensus 423 ~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 423 WVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDH 480 (858)
T ss_pred ehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHh
Confidence 99999999999999877542222333333333333222 33 44444444444555544
No 119
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.44 Score=41.14 Aligned_cols=170 Identities=22% Similarity=0.220 Sum_probs=98.8
Q ss_pred HHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 021317 45 IATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 122 (314)
Q Consensus 45 l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~ 122 (314)
+.....+|.|+..|... .+-+|..|..+|.++. ..+.++.+-+..+++...+++-+..+|..+-..+.
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 34456788999988654 5667888999998883 34555566666667777788778778877754221
Q ss_pred C-----chhhh--h------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCH
Q 021317 123 N-----SSPIL--D------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL 189 (314)
Q Consensus 123 ~-----~~~i~--~------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~ 189 (314)
. ..... + .+-+..|-..|.+.+...=-+..++-.|.|+.. ...|..|+.-+..++.
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSA 201 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchH
Confidence 1 11111 1 111333333333322110012234444444322 2235566666666777
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhc
Q 021317 190 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~ 247 (314)
..|..++.+|..|-+.. .++.|.+.+.+ ..|.+|..|+.+|..+++
T Consensus 202 lfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred HHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 77888888877776331 56777775554 457788788777777654
No 120
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.44 E-value=0.57 Score=42.51 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=141.0
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch-hhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS-PILD--ATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~-~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
.+...+.+..|+..|..-+-+.+..+..+..++... .+++. ..++ ..-.|.++..|-.+.+.+++.-.+..+|...
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 346679999999999999999999999999999854 34443 2333 1232444454544444556777888999999
Q ss_pred cCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc---CChHHHHHhhhcCCHHHHHH
Q 021317 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQER 237 (314)
Q Consensus 161 ~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~---g~v~~Lv~ll~~~~~~~~~~ 237 (314)
..++...+.+. +...+..+.+.+..++=++...|..++..+-..+. ......... ..+.....++.+++--+++.
T Consensus 151 ~k~e~l~~~iL-~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IKHESLAKIIL-YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TTSHHHHHHHH-TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HhhHHHHHHHh-CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 99988888888 68899999999999999999999999988655543 444555443 46677778999999999999
Q ss_pred HHHHHHHhhcCCch-h-hcchhhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 238 ARTLLDLLRDTPQE-K-RLSSSVL-EKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 238 A~~~L~~l~~~~~~-~-~~~~~~~-~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+..+|..+--.+.. . +.....- +.+-..|....+.+...+-.|=-+.+-+++.
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999998754432 2 2222221 2222222223577788999999999999973
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.44 E-value=0.13 Score=42.33 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh
Q 021317 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT 227 (314)
Q Consensus 148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll 227 (314)
.++.+++.+++-|+...++ ++ ...++.+...|.++++.+|..|+.+|.+|...+.-+.+ ...+..++..+
T Consensus 3 ~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~~l 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHHHH
Confidence 5677788888777765432 22 23678899999999999999999999999865422212 22347777888
Q ss_pred hcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317 228 VEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA 267 (314)
Q Consensus 228 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~ 267 (314)
.+.+++++..|...+..+........+...+.+ ++..+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e-~i~~l~ 111 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPE-LISSLN 111 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHh
Confidence 999999999999999999876333333333333 444554
No 122
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.46 Score=46.91 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=130.6
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhH---------Hh
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA---------IA 87 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~---------i~ 87 (314)
+.+..+.+.-.|.+++..+.. .+-+.+.. .+..|--+++++.+.+|..|.++|..+|.....+.. |-
T Consensus 254 l~~K~emV~~EaArai~~l~~--~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt 329 (865)
T KOG1078|consen 254 LRHKSEMVIYEAARAIVSLPN--TNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT 329 (865)
T ss_pred HhchhHHHHHHHHHHHhhccc--cCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc
Confidence 455677888888888873332 11122222 677888889999999999999999999984322211 11
Q ss_pred hcC---cHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317 88 ASG---AAPLLVQILHSGSVQGRVDAVTALHYLST--CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162 (314)
Q Consensus 88 ~~g---~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~ 162 (314)
+.+ .-.++..+|+.+.......-..-+.+... +++.+..+++ ++..|....- .-...-+..|.++-.
T Consensus 330 d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~~fp------~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCLKFP------RKHTVMMNFLSNMLR 401 (865)
T ss_pred ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHhhcc------HHHHHHHHHHHHHHH
Confidence 111 33455666777766555555555555542 3444444433 2333322211 111223333333322
Q ss_pred C---hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHH-------HHHc--------CChHHHH
Q 021317 163 S---EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL-------ILKE--------GAIPGLL 224 (314)
Q Consensus 163 ~---~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~-------i~~~--------g~v~~Lv 224 (314)
. -+.++.++ +.++..+.. .+.-++.++.-|+..-.++ +..+. +..+ ..+..+.
T Consensus 402 ~eGg~e~K~aiv------d~Ii~iie~-~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~iy 472 (865)
T KOG1078|consen 402 EEGGFEFKRAIV------DAIIDIIEE-NPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRFIY 472 (865)
T ss_pred hccCchHHHHHH------HHHHHHHHh-CcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHHHh
Confidence 2 23333333 345555543 2333455554444433222 11111 1111 2333344
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 021317 225 RLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRSMELS 295 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s~~~~ 295 (314)
...--.+..++-.|+.+|.++..... +..+.+...|... .|.++..+++|.-.|.++.....+.+
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~ 538 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLN 538 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhc
Confidence 43334677888888889999873222 2222222222211 47778899999999999885443333
No 123
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.39 E-value=0.34 Score=46.65 Aligned_cols=270 Identities=11% Similarity=0.030 Sum_probs=150.1
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAA 92 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l 92 (314)
+.|....+++.-..+.|+. ..+-..-..-.=--.|.+|.|...|++.+..+..+....++.++.+........ +-..-
T Consensus 653 E~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc 732 (975)
T COG5181 653 ENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC 732 (975)
T ss_pred HhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 4455666777666666665 332221111111136889999999999999999999999999988643322111 12234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
--|+..|.+.+.+.+.+|...++.++..- .-..++..|++-|+.. +.+...++.+. + ..+..
T Consensus 733 feLvd~Lks~nKeiRR~A~~tfG~Is~ai------GPqdvL~~LlnnLkvq----eRq~Rvctsva-I-------~iVae 794 (975)
T COG5181 733 FELVDSLKSWNKEIRRNATETFGCISRAI------GPQDVLDILLNNLKVQ----ERQQRVCTSVA-I-------SIVAE 794 (975)
T ss_pred HHHHHHHHHhhHHHHHhhhhhhhhHHhhc------CHHHHHHHHHhcchHH----HHHhhhhhhhh-h-------hhhHh
Confidence 46788899999999999999888776431 1122333444444332 22222222221 0 11111
Q ss_pred ccCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 173 SDGGILTLVETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 173 ~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
..|-...|-.+|. +.+..+|.-.+.+++.+-..-.+..++.+- -..|.|-..+-+.|+.-++-|..+++.|+-++
T Consensus 795 ~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 795 YCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred hcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 3455555555554 355777777777777766543222222222 13344444777889999999999999998766
Q ss_pred chhhcchhhhH--HHH-HHHhhcCCCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhhcCCC
Q 021317 250 QEKRLSSSVLE--KIV-YDIAARVDGADKAAETAKRLLQDMVQR-SMELSMTRIQQRAASSAPS 309 (314)
Q Consensus 250 ~~~~~~~~~~~--~lv-~~l~~~~~~~~~~~~~A~~~L~~l~~~-s~~~~~~~~~~~~~~~~~~ 309 (314)
.....+..++. .++ +.+. +.++.+...-...+..++.. ++..-|++++ +|+=||+
T Consensus 873 ~gtg~eda~IHLlNllwpNIl---e~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~--qGLFHPs 931 (975)
T COG5181 873 PGTGDEDAAIHLLNLLWPNIL---EPSPHVIQSFDEGMESFATVLGSGAMMKYVQ--QGLFHPS 931 (975)
T ss_pred CCcccHHHHHHHHHHhhhhcc---CCCcHHHHHHHHHHHHHHHHhccHHHHHHHH--HhccCch
Confidence 54322222222 121 2222 44466554444444444321 3445555533 3555555
No 124
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=1 Score=44.65 Aligned_cols=146 Identities=10% Similarity=0.039 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC-----------------cH--
Q 021317 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC-----------------RD-- 208 (314)
Q Consensus 148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~-----------------~~-- 208 (314)
.+.-+++.+.+.++.-.+. .+++..|+++|.+. ..++...+..+.-++-.. +.
T Consensus 302 sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred HHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence 5667788888888765422 23566888877653 333444444444433211 10
Q ss_pred -HHHH----HHHHcCCh----HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHH
Q 021317 209 -KYRQ----LILKEGAI----PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET 279 (314)
Q Consensus 209 -~~~~----~i~~~g~v----~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~ 279 (314)
..+- .+..++-+ +-+..++++.+......|+.++..|+.... -+....+.+||..|.++ ++.+-..
T Consensus 374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--sv~~tCL~gLv~Llssh---de~Vv~e 448 (968)
T KOG1060|consen 374 KILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--SVTDTCLNGLVQLLSSH---DELVVAE 448 (968)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--chhhHHHHHHHHHHhcc---cchhHHH
Confidence 0000 11122223 333345666666555566667777665332 35567788888777743 4567789
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 021317 280 AKRLLQDMVQRSMELSMTRIQQRAASS 306 (314)
Q Consensus 280 A~~~L~~l~~~s~~~~~~~~~~~~~~~ 306 (314)
|...+++|.+..+-+.-+.+.+=|.+=
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 999999999888877766666655543
No 125
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.37 E-value=0.029 Score=41.15 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=52.9
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
-.++.++..+.+.+..+|..|+.+|.|++... +..+.. ......|.+++.+.++.+|..|. .|-++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 47889999999999999999999999999764 344443 56888899999999999997774 44443
No 126
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.5 Score=48.65 Aligned_cols=227 Identities=12% Similarity=0.099 Sum_probs=128.7
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchhHHHHHh--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC--ChhHHhhcC
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASG 90 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~g 90 (314)
...++.++.+|.++-+.|..+...+.......+ ......|.+-+++.....+..++.+|..|-.... ....+ ..
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k 738 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PK 738 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HH
Confidence 345666899999999988843333333332221 1122333444444455566666677766654322 22222 33
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcC----CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
.|+-++-.+++.+...+..+..+|..+.. .++..+. ....+...+..+..+-........+.. |..+..--..
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e 815 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQE 815 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHH
Confidence 45555555677788889999998888873 1111111 112566666666655211121222222 2222211111
Q ss_pred hhHHHh---ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317 167 RIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243 (314)
Q Consensus 167 ~~~i~~---~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~ 243 (314)
...+.+ -.+.++.+..+|.++++.++..|.+.+..++..-|+..- .--..-.++.+..++++....++.....+|.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 112220 134555666677788999999999999999987763222 2122346888888888888888888888888
Q ss_pred Hhhc
Q 021317 244 LLRD 247 (314)
Q Consensus 244 ~l~~ 247 (314)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 8764
No 127
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.29 E-value=0.18 Score=44.73 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=144.4
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHH-hcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCChhHHhh-cCcHHHHH
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIA-TAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAA-SGAAPLLV 96 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~i~~-~g~l~~Lv 96 (314)
++-.+-.|++++......++.|..+- +...-..+++.+++. +.+++-+.+-+++-|+.++.....|-+ -.-+.-++
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45567777788885556677766544 444456778888753 567888899999999988776644432 24566667
Q ss_pred HHhccC-CHHHHHHHHHHHHHhcC-CC-CCchhhhhcCCcHHHHHHhhcc-CCchHHHHH---HHHHHH----HhcCCh-
Q 021317 97 QILHSG-SVQGRVDAVTALHYLST-CK-ENSSPILDATAVPPLINLLKDC-KKYSKFAEK---ATALLE----ILSSSE- 164 (314)
Q Consensus 97 ~lL~~~-~~~~~~~a~~~L~nLs~-~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~---a~~~L~----~L~~~~- 164 (314)
.+.+.. .+.+..-+++++.|++. .+ .....+.-.|-+.+-+++|... ..+++++.. -...|- .|+..+
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 776654 56778889999999986 22 2223333355555666666542 233333211 111111 112111
Q ss_pred -----------------------hhhhHHH-hccCCHHHHHHHhhcCCHH-HHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317 165 -----------------------EGRIAIT-NSDGGILTLVETVEDGSLV-STQHAVGALLSLCQSCRDKYRQLILKEGA 219 (314)
Q Consensus 165 -----------------------~~~~~i~-~~~g~v~~Lv~ll~~~~~~-~~~~A~~~L~~L~~~~~~~~~~~i~~~g~ 219 (314)
+|-..+. +.-..+..|..+++...+. ....|+.-+..+....| +.+..+..-|+
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~vl~Kyg~ 400 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAVLSKYGV 400 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHHHHHhhh
Confidence 1222222 1224577888888876654 44567777888877766 67888888999
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 220 IPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
=+.++.++.+++++++-.|..++..+-
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999998887663
No 128
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.18 E-value=0.037 Score=40.59 Aligned_cols=93 Identities=12% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-C
Q 021317 192 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-V 270 (314)
Q Consensus 192 ~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~ 270 (314)
|.-++.+|...+-.-+....+.+ .-.+++++..+.+.++++|..|+.+|.++++...+..+. ..+.+...|... .
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc
Confidence 34566666666554432222222 347889999999999999999999999999877654433 222233333322 2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 021317 271 DGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 271 ~~~~~~~~~A~~~L~~l~~ 289 (314)
|.+++++. ++++|-++.|
T Consensus 79 D~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRS-AAELLDRLLK 96 (97)
T ss_pred CCchhHHH-HHHHHHHHhc
Confidence 54445554 4466666654
No 129
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.16 Score=49.93 Aligned_cols=208 Identities=13% Similarity=0.088 Sum_probs=139.8
Q ss_pred ceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317 12 VEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG 90 (314)
Q Consensus 12 ~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g 90 (314)
-+..||.+..+..+..|..-|. +..++.+. +...|.+|+-..+.+.+++...---|..-|..+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 3467889988888888888777 55555542 233577888888999999998888888888765543333
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA 169 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~ 169 (314)
-|..+-+-|.++++.+|..|+++|..+-- .++..=.+-.+-+...+. .+-++..|..++-.|-+- ++.+.+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~--s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDP--SPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCC--cHHHHHHHHHhhHHHhcCChhhHHH
Confidence 24556677899999999999988866432 222211111222222333 335666677777666544 555554
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+. ..+-.+|.+.++.+.-.|+.+.-.+|.+ +-.++- +-..+|++++.+-+...|-.....|..-|++.
T Consensus 181 L~------e~I~~LLaD~splVvgsAv~AF~evCPe-----rldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 181 LE------EVIKKLLADRSPLVVGSAVMAFEEVCPE-----RLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HH------HHHHHHhcCCCCcchhHHHHHHHHhchh-----HHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhc
Confidence 44 3566677888899999999999998843 333333 34788888888888888877777766666544
No 130
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.17 E-value=0.094 Score=49.58 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=115.9
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCC--chHHHHHHHHHHHHhcCChhhhh
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
....+.+++.++++..+..+..-|..++.+..-...+....++..|..++.++.. ...+...+++++..+-.+.-.--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 5667889999999988888999999999999989999999999999999999765 34555556666655443322222
Q ss_pred HHHhccCCHHHHHHHh--hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 169 AITNSDGGILTLVETV--EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll--~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
..+ ...+|.....+. +.-+..+-..|+..|-++...++ ..++.+.++--++.|++.++.++..++..|.+++..+-
T Consensus 164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~-~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD-TLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh-HHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 222 233333333333 22345667889999999888764 56777888889999999999999999999999888875
Q ss_pred cC
Q 021317 247 DT 248 (314)
Q Consensus 247 ~~ 248 (314)
..
T Consensus 242 ~~ 243 (713)
T KOG2999|consen 242 RK 243 (713)
T ss_pred hh
Confidence 43
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.07 E-value=0.57 Score=42.11 Aligned_cols=188 Identities=22% Similarity=0.247 Sum_probs=112.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCCchhh
Q 021317 53 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI 127 (314)
Q Consensus 53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~~~i 127 (314)
-.+..+...+...|+.++..+.++-...-....+. ....+..+.+.++.+..+-+..|+.++.-++.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34555556678889999998888765543333333 234677888888888776677777777777743 2445555
Q ss_pred hhcCCcHHHHHHhhccCCchHHHHHHHHHHHH---hcCC-hhhhhHHHhccCCHHHHHH--Hhhc-C---------CHHH
Q 021317 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEI---LSSS-EEGRIAITNSDGGILTLVE--TVED-G---------SLVS 191 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~---L~~~-~~~~~~i~~~~g~v~~Lv~--ll~~-~---------~~~~ 191 (314)
.+ ...|.|...+.++......+..++.+|.- ++.. .+....... .+..+.. ..+. + ++.+
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 55 37788889988876544554555544443 3332 222221111 2222211 1111 1 2456
Q ss_pred HHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 192 TQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 192 ~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
...|+.+-.-|...-+. ... ... ...++.|..++.+.+..+|..|-.+|..|-
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66666665555544332 223 222 346899999999999999999887777664
No 132
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.13 Score=50.52 Aligned_cols=176 Identities=19% Similarity=0.222 Sum_probs=113.5
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-chhhhh
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-SSPILD 129 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~ 129 (314)
..++.+.++++++-++..++....++ ++.+.......|.++.|-.++.+.++.+..+|+.+|..+...+.+ -..-..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 45788889999999998777666665 455667778899999999999999999999999999999965543 222223
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 208 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~ 208 (314)
...+..++..+...+.|.++ .+|-+++...... .... ..+..+...|.+.++.+.-.+...+.++.....
T Consensus 201 ~~~~~~lL~al~ec~EW~qi-----~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~- 271 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQI-----FILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK- 271 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHH-----HHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH-
Confidence 44666677777776665443 3344444432111 1221 144566667777777777777777777776543
Q ss_pred HHHHHHHHcCChHHHHHhhhcCCHHHHHHHH
Q 021317 209 KYRQLILKEGAIPGLLRLTVEGTFEAQERAR 239 (314)
Q Consensus 209 ~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~ 239 (314)
. .....-...-++|+.++...+ +++--|.
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~-e~qyvaL 300 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES-EIQYVAL 300 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc-hhhHHHH
Confidence 2 222222345556666665444 4444333
No 133
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.99 E-value=0.22 Score=50.12 Aligned_cols=266 Identities=18% Similarity=0.123 Sum_probs=137.4
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
...++|-..|-.|+.-|. -...+.-+-..=-+..++..++++|.+.+++++..|+.+++-|+.- -...++ ...+..
T Consensus 13 kmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK-vke~~l--e~~ve~ 89 (1233)
T KOG1824|consen 13 KMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK-VKEDQL--ETIVEN 89 (1233)
T ss_pred HccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh-chHHHH--HHHHHH
Confidence 345666677777877776 3332221111112345678899999999999999999999998731 000001 112223
Q ss_pred HHHHhccCCHHHHHH-HHHHHHHhcCCCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHHHhcCC-hhhhh
Q 021317 95 LVQILHSGSVQGRVD-AVTALHYLSTCKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSS-EEGRI 168 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~-a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~~L~~~-~~~~~ 168 (314)
|..-+-++.+..+.- +++....++.-++.........+.+.+...+ ....+...++-.++.++..+-.. .+---
T Consensus 90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred HhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 333322333333322 2332222333332222233333444444444 33222223445555555433221 11111
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~ 247 (314)
. . +.+....++..+.+....++..|+.+|..++...+. .... +.++.|++=+.. ..+...+--+.+|..+++
T Consensus 170 ~-f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~---~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 170 N-F-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR---DLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred c-h-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH---HHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 1 2 345556677777777789999999999999987642 3332 245555553322 333334444456666665
Q ss_pred CCchhhcchhhhHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 248 TPQEKRLSSSVLEKIVYDIAAR----VDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 248 ~~~~~~~~~~~~~~lv~~l~~~----~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
...... . .-.+.+++.+... ....++-+|...++|..|..+.+.
T Consensus 243 ~ag~r~-~-~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 243 QAGHRF-G-SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred Hhcchh-h-cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 432211 1 1122233333322 233467799999999999977654
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.88 E-value=0.31 Score=43.82 Aligned_cols=184 Identities=16% Similarity=0.160 Sum_probs=104.2
Q ss_pred cccCCHHHHHHHHHHhH-hhccCchhHHHHH--hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CCChhHHhhcC
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIA--TAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---APNKPAIAASG 90 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~i~~~g 90 (314)
+.......|+.++..+. .+..+... ..+. ..-.++.+.+.++.+..+-+..|+.++.-++.. .+....+. ..
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~ 129 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EE 129 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HH
Confidence 34445677888888877 44333221 2222 223466777778877766666777777777664 23344444 35
Q ss_pred cHHHHHHHhccCC--HHHHHHHHHHHHHhcCC-CCCchhhhh-cCCcHHH--HHHhhc-cC-------CchHHHHHHHHH
Q 021317 91 AAPLLVQILHSGS--VQGRVDAVTALHYLSTC-KENSSPILD-ATAVPPL--INLLKD-CK-------KYSKFAEKATAL 156 (314)
Q Consensus 91 ~l~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~-~~~~~~i~~-~g~i~~L--v~lL~~-~~-------~~~~~~~~a~~~ 156 (314)
..|.|.+.+.+++ +..|..++.+|.-++.- ...-..+.. ...+..+ ....+. +. +.+.+...|+..
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 7788888888764 45666777777766532 111111111 1122211 111221 11 123455555554
Q ss_pred HHHhcCC-hhh-hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 157 LEILSSS-EEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 157 L~~L~~~-~~~-~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
-.-|.+. +.. ..... ...++.|..+|.+.+..+|..|-.+|+-|..
T Consensus 210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4444433 332 22332 3479999999999999999999988887753
No 135
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.83 E-value=0.067 Score=44.45 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhc----------------CCcHHHHHHhcC------CCHHHHHHHHHHHHHhcc
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATA----------------GAIPPLVELLKF------QNGTLRELAAAAILTLSA 78 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~----------------g~v~~Lv~lL~~------~~~~~~~~a~~~L~~La~ 78 (314)
+...-..++..|.+....+.....+.+. ..+..|+..+.. ...+-....+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3334455555566666666665544422 235667776644 234456678899999999
Q ss_pred CCCChhHHhhc--Cc--HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc---CCcHHHHHHhh
Q 021317 79 AAPNKPAIAAS--GA--APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA---TAVPPLINLLK 141 (314)
Q Consensus 79 ~~~~~~~i~~~--g~--l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~lL~ 141 (314)
.++.|..+.+. +. +..|+..+.+.+..-|..++++|+|+|.+.+....+... +++|.|+--|-
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999854 44 778888888888888999999999999988877777753 45555555554
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.79 E-value=0.025 Score=42.83 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=56.5
Q ss_pred CHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 176 GILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 176 ~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
.+..|+.+|. +.++.+...|+.=|..++...| ..|..+-+.|+=..+++++.+.+++++..|..++..+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p-~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP-NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G-GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHCh-hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4678999994 4467777889999999999876 56777777888888999999999999999999988764
No 137
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.81 Score=43.81 Aligned_cols=224 Identities=10% Similarity=0.022 Sum_probs=140.0
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CC--------
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PN-------- 82 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~-------- 82 (314)
.++..+++++++|.++..++. +..-....-....+.-........+++++.++...|+..-..++... +.
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 356778899999999999987 54444444445556555666778889999998888776554444310 10
Q ss_pred --------hhHHhhcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc---C
Q 021317 83 --------KPAIAASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---K 144 (314)
Q Consensus 83 --------~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---~ 144 (314)
-..-.-..++|-|+++|... +-.....|..+|.-.+....+ . .+.+++...... .
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~-----i~~pVl~FvEqni~~~ 378 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--K-----IMRPVLGFVEQNIRSE 378 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--H-----hHHHHHHHHHHhccCc
Confidence 00011235889999999752 234556666666655543211 2 344444444321 2
Q ss_pred CchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317 145 KYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 222 (314)
Q Consensus 145 ~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~ 222 (314)
.| .-++.+.-++..+-.. .+.+..++ +.++|.+...+.+..--+++.+++++..++.+- ...+--.|-++.
T Consensus 379 ~w-~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~ 451 (858)
T COG5215 379 SW-ANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVL 451 (858)
T ss_pred hh-hhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccH
Confidence 23 4456666666655443 33455555 568999999998877888999999999998542 223333554554
Q ss_pred HHHh-hh--cCCHHHHHHHHHHHHHhhcCCc
Q 021317 223 LLRL-TV--EGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 223 Lv~l-l~--~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
.++. +. .+.|.+..++.|..-||.+|-.
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 4442 22 2568888899999999987664
No 138
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=1.1 Score=45.78 Aligned_cols=237 Identities=15% Similarity=0.092 Sum_probs=142.0
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchh
Q 021317 48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSP 126 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~ 126 (314)
.++++.|++.|++.+..++..|+.-++.++.... ..+ ...++...++++... ++..-..++.+|..|+...-..-.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3677888888888899999999999999988655 222 234566667755543 356667899999999865322211
Q ss_pred hhhcCCcHHHHHHhhcc------CCchHHHHHHHHHHHHhcCChhhh--hHHHhccCCHHHHHHHhhcCCHHHHHHHHHH
Q 021317 127 ILDATAVPPLINLLKDC------KKYSKFAEKATALLEILSSSEEGR--IAITNSDGGILTLVETVEDGSLVSTQHAVGA 198 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~------~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~ 198 (314)
..+ .++|.++.-|.-. .....+++.|+-++|.++...+.. +-+. +.=.-..|+..+-+.+-.+|..|..+
T Consensus 417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 111 2445555444321 112367889999999998774433 2222 11112234445567778888888888
Q ss_pred HHHhhccCcH------------------------HHHHHHHH-cCChHHHHHh-h----hcCCHHHHHHHHHHHHHhhcC
Q 021317 199 LLSLCQSCRD------------------------KYRQLILK-EGAIPGLLRL-T----VEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 199 L~~L~~~~~~------------------------~~~~~i~~-~g~v~~Lv~l-l----~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+.......++ +....+.+ .|...++.+- + .+=++.+++.|+++|..|+.-
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 8765432110 11222333 4556666652 2 234899999999999998765
Q ss_pred CchhhcchhhhHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHH
Q 021317 249 PQEKRLSSSVLEKIVYDIAARVDGADKA--AETAKRLLQDMVQRS 291 (314)
Q Consensus 249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~--~~~A~~~L~~l~~~s 291 (314)
.+ +....+++++++..... .+...+. --.+..+...+.+..
T Consensus 575 ~p-k~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 575 EP-KYLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred hH-HhhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhh
Confidence 44 35566777777766541 1222222 244555555555443
No 139
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.11 Score=50.99 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=91.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
...++.+.+++.++.++..++.+..++-.. +.....+.|.++.|-+++.+.++ .+..+|+++|..+...+.+....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll~D~~p--~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLLSDSNP--MVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHhcCCCc--hHHHHHHHHHHHHHHhCCCCCcc
Confidence 566888999999999999888888777644 45666778999999999996554 78899999999887654431111
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
.-..-.+..++..+...+...+-..+ -+++...+++-+++ ...++.+...+.+.++.+.-.+...+..+..
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 10122334455555444443333333 33443333211111 1245566666777777777777766666554
No 140
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.56 Score=46.83 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=119.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcH
Q 021317 55 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP 134 (314)
Q Consensus 55 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~ 134 (314)
+..+.++-+.++..++..|..+......+..+...+++......|++.++-+--+|+..+..||.- .....+|
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 344445566788899999999998877777888899999999999999998888999877777743 2233666
Q ss_pred HHHH-HhhccCCc-hHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 135 PLIN-LLKDCKKY-SKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 135 ~Lv~-lL~~~~~~-~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
.|.+ ..+..+.. .+.+-....++.++... +-...... -.+..++..+++++...|..+++.|+++|.-..-..
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~---~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA---VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH---HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 6666 33322111 12222333445444332 11111111 244566677776667778999999999996542122
Q ss_pred HHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCch
Q 021317 211 RQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 211 ~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
...+.+ .+..++.+.+ ++++.+|+.|+-++..+-.+-.+
T Consensus 883 sd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 883 SDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred hHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 233333 5566666555 45788999999999888776654
No 141
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.55 E-value=0.13 Score=44.60 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHH
Q 021317 22 GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQI 98 (314)
Q Consensus 22 ~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~l 98 (314)
+.....|++.|. .+--++..|..+.....+..|+++|. ...+.++..++.+|.. |..++.|...+-+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 334555777788 77789999999999999999999995 4568888888888777 55567899989899999999999
Q ss_pred hccC--CHHHHHHHHHHHHHhc
Q 021317 99 LHSG--SVQGRVDAVTALHYLS 118 (314)
Q Consensus 99 L~~~--~~~~~~~a~~~L~nLs 118 (314)
+++. +.+++..++..|.-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 9876 6788888887765444
No 142
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.35 E-value=0.12 Score=44.83 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhc
Q 021317 66 RELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKD 142 (314)
Q Consensus 66 ~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~ 142 (314)
...|++.|.-++. |+.+|..+.+..++..++.+|+. .++.++..++.+|..+. .++.|...+-+.+++..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4456677777665 67889999999999999999954 57888899988888777 778899989899999999999999
Q ss_pred cCCchHHHHHHHHHHHHhcCC
Q 021317 143 CKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 143 ~~~~~~~~~~a~~~L~~L~~~ 163 (314)
.....+++-++...|.-....
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccHHHhHHHHHHHHHHHcc
Confidence 877777877888877654443
No 143
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.30 E-value=0.7 Score=46.12 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=100.9
Q ss_pred cccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317 17 ETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 95 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L 95 (314)
+.+.++..|..|.+-+. ....+++.-.. .+.+++...+.+.+++.-.---|.+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 56667777888887665 44444443222 244566666667777776666666666654422222 24455
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
.+=+.++++.+|..|++++..|=... +-..+++++.+++.++++ -++..|.-++.++-.- .+..+. +.|
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~e------l~~~~~~~ik~~l~d~~a--yVRk~Aalav~kly~l--d~~l~~-~~g 166 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVKE------LLGNIIDPIKKLLTDPHA--YVRKTAALAVAKLYRL--DKDLYH-ELG 166 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHccCCcH--HHHHHHHHHHHHHHhc--CHhhhh-ccc
Confidence 55567778888888777776543221 112356667777766654 5666655555554322 122223 566
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
.+..+..++.+.++.+..+|+.+|..+...
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 777777777777788888888887777643
No 144
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.27 E-value=0.037 Score=45.65 Aligned_cols=112 Identities=13% Similarity=0.209 Sum_probs=76.5
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccC-------CchHHHHHHHHHHHHh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCK-------KYSKFAEKATALLEIL 160 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~~~a~~~L~~L 160 (314)
.....+++.+.+..... ..+.-|.-.-... .-...+++.||+..|+++|..-. .+......++.++..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34455677776654322 1122221111111 23456778899999999886421 2235667789999999
Q ss_pred cCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317 161 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203 (314)
Q Consensus 161 ~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~ 203 (314)
..+..+...++.+.+++..++..|.+.+..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999887
No 145
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.26 E-value=1.3 Score=44.52 Aligned_cols=185 Identities=15% Similarity=0.087 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh
Q 021317 61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL 140 (314)
Q Consensus 61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL 140 (314)
..+.++..|+++++.-+....... ..++.+.-|+++....+.++......+|...+..+.-.....+..+.|....+.
T Consensus 503 ~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 345667777777776652111111 135778888888888888998889999999997776666666777777777777
Q ss_pred hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 141 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 141 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
...++++.+...+--++..++....+..-+. .-.+|.++..|.... ......|+..|.-+-...++..-..+..
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 6555555777777788888887666666664 458999999997654 5556667777766655544333333332
Q ss_pred cCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 217 EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 217 ~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
-+.|++.+ .+.+++...-.+|-.+|+.+-....
T Consensus 659 -~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 659 -YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred -HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 46777777 4556677778888889988876543
No 146
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.71 Score=46.06 Aligned_cols=168 Identities=17% Similarity=0.074 Sum_probs=118.9
Q ss_pred hcCCCHHHHHHHHH-HHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHH
Q 021317 58 LKFQNGTLRELAAA-AILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL 136 (314)
Q Consensus 58 L~~~~~~~~~~a~~-~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 136 (314)
+.+.+...+..|.. ++..++..++- .-..+.+++...+.|.+++.-.-.=|.+.+...+....+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 55556666666665 55556554441 223466677777888999988888888887554421111 34445
Q ss_pred HHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 137 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 137 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
.+=+++.+ +.++-.|++.+..+-. ..+. .-.++.+.+++.++++-+|..|+-++..+-..+ ++...+
T Consensus 98 ~kDl~d~N--~~iR~~AlR~ls~l~~-----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----~~l~~~ 164 (757)
T COG5096 98 QKDLQDPN--EEIRGFALRTLSLLRV-----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----KDLYHE 164 (757)
T ss_pred HhhccCCC--HHHHHHHHHHHHhcCh-----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC----Hhhhhc
Confidence 55555554 4788888888865422 1222 236778999999999999999999999998665 466777
Q ss_pred cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 217 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 217 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
.|.+..+..++.+.+|.+..+|...|..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88899999999999999999999999998654
No 147
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.20 E-value=0.0053 Score=56.80 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhccCCCChhH-HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC----CCCc----hhhhhcCCcH
Q 021317 64 TLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC----KENS----SPILDATAVP 134 (314)
Q Consensus 64 ~~~~~a~~~L~~La~~~~~~~~-i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~~----~~i~~~g~i~ 134 (314)
-++..|.+++.-+..++..+.. +.-..+...+...|.+..-..+..+++++.|++.. -++- .++... .+.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~ 484 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLL 484 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHH
Confidence 3555666666666667655443 33556677777778887888999999999999742 1221 111111 122
Q ss_pred HHHHHh-hccCCchHHHHHHHHHHHHhcCChhhhhHHHh---ccCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHH
Q 021317 135 PLINLL-KDCKKYSKFAEKATALLEILSSSEEGRIAITN---SDGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDK 209 (314)
Q Consensus 135 ~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~ 209 (314)
.+...- ..+.+..++..++.+.|.|+...-+.-..... ..|.+..++.. ...+..+++.+|+-++.||.++..-.
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 222221 12222337888899999988765332111110 12222222222 22356789999999999999764211
Q ss_pred HHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 021317 210 YRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLR 246 (314)
Q Consensus 210 ~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~ 246 (314)
.+..-+...+.+.|..++.+ .+-.++.+|+.+|..-.
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 22233334578888887766 56888888998886544
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.17 E-value=0.041 Score=31.01 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLST 119 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 119 (314)
+|.+++++.++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
No 149
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.15 E-value=2.9 Score=39.35 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=104.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC----CchhhhhcCCcHHHHHHhhccC-----CchHHHHHHHHHHHHhcCChh
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKE----NSSPILDATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEE 165 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~~~a~~~L~~L~~~~~ 165 (314)
+..++...+.+-+..|+.....+..+++ +|..+.++=+.+.+=+++.+++ ++.-.+.-+.++|..+|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666777778888888888886654 7778888888888888887532 222345567788999999876
Q ss_pred h--hhHHHhccCCHHHHHHHhhcC-CH------HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHH
Q 021317 166 G--RIAITNSDGGILTLVETVEDG-SL------VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQ 235 (314)
Q Consensus 166 ~--~~~i~~~~g~v~~Lv~ll~~~-~~------~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~ 235 (314)
- ...+++ .||.|+..+..+ ++ ...+.+-.+|..++...+ ..+.++..|+++.+.+.-.. +-..-+
T Consensus 96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~--G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA--GLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc--hhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 4 566773 899999999643 22 367889999999998864 48889999999999985433 333444
Q ss_pred HHHHHHHHHh
Q 021317 236 ERARTLLDLL 245 (314)
Q Consensus 236 ~~A~~~L~~l 245 (314)
.-|..++..+
T Consensus 171 alal~Vlll~ 180 (698)
T KOG2611|consen 171 ALALKVLLLL 180 (698)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 150
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.12 E-value=1.8 Score=42.86 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=127.0
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~ 91 (314)
.+.|....+++.-..+.|+. ...-..-.+..=--.|.+|.|...|++.+..+++++...++.++.......... +-..
T Consensus 847 yEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI 926 (1172)
T KOG0213|consen 847 YEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI 926 (1172)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 45566667777666666655 222111111111135889999999999999999999999999998643211111 1223
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 171 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 171 (314)
---|+++|.+.+.+.+.+|...++.++..- .-..++..|++-|+.. +.+...++.+. ++- +.
T Consensus 927 cfeLlelLkahkK~iRRaa~nTfG~IakaI------GPqdVLatLlnnLkvq----eRq~RvcTtva-IaI-------Va 988 (1172)
T KOG0213|consen 927 CFELLELLKAHKKEIRRAAVNTFGYIAKAI------GPQDVLATLLNNLKVQ----ERQNRVCTTVA-IAI-------VA 988 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhc------CHHHHHHHHHhcchHH----HHHhchhhhhh-hhh-------hh
Confidence 446788889999999999999988876431 1122333333333331 21222222221 111 11
Q ss_pred hccCCHHHHHHHhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 172 NSDGGILTLVETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 172 ~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
...|-...|-.+|. ..+..+|.-.+.+|+.+-..-.+-.++.+- -..|.|-..+-+.|+.-++-|+.++..++-+
T Consensus 989 E~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 989 ETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 12344445555554 456778877777777766443222222222 2345555577778888899999999999866
Q ss_pred Cc
Q 021317 249 PQ 250 (314)
Q Consensus 249 ~~ 250 (314)
..
T Consensus 1067 ~~ 1068 (1172)
T KOG0213|consen 1067 VP 1068 (1172)
T ss_pred CC
Confidence 54
No 151
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.12 E-value=0.04 Score=41.74 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=54.6
Q ss_pred cHHHHHHhc-CCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 021317 51 IPPLVELLK-FQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 118 (314)
Q Consensus 51 v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs 118 (314)
+..|+.+|. +.++....-|+.=|+.+..+ |.++..+.+.|+=..+++++.+++++++..|+.++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 567899994 44677777788888887774 677777778899999999999999999999999987664
No 152
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.05 E-value=0.045 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.6
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 220 IPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+|.+++++++.++++|..|+.+|..++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998764
No 153
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.98 E-value=3.1 Score=42.27 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=124.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAIT 171 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~ 171 (314)
.+-.-+.+.+..-+..|+..+........ ....- ..|.+-.++....- +.+..+...++.+|..++.. ...-....
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 44444556666777777777766665544 11111 13444444444433 23346667777778777765 22322222
Q ss_pred hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317 172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
.+..+.++..+++....+++.+..++..++...+. ....+.+...+++++|..+..+...+..+-.....
T Consensus 335 --~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l--------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 335 --KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL--------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred --HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 35788999999988888888888888777764431 12466677888999999999877766665543332
Q ss_pred hhcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021317 252 KRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRSMELSMTRI 299 (314)
Q Consensus 252 ~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~s~~~~~~~~ 299 (314)
....-..+..+++.+..+. |...+++..|..++.-+.+..-+.-..++
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444556666777766555 66678899999988888877766665553
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.58 E-value=0.68 Score=41.35 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=102.4
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CCh-------hH
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNK-------PA 85 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~-------~~ 85 (314)
..+.++++.+|+.|+.++.+++--+. .+.. ..++.+...++.+++.++..|+.++..+.... +.- ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 45678899999999999995443222 1122 22566777787778999999999999976521 111 11
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC--CchHHHHHHHHH-HHHhcC
Q 021317 86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--KYSKFAEKATAL-LEILSS 162 (314)
Q Consensus 86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~~-L~~L~~ 162 (314)
......++.+...+.+.+++++..++..++.|-....... ....+..|+-+--++. ++..+ ..+++. +-..+.
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVFFPVYAS 185 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHH-HHHHHHHHHHHHc
Confidence 2234577788888899999999999999999886543222 1334444444443332 22244 345544 445565
Q ss_pred ChhhhhHHHhccCCHHHHHHHhhc
Q 021317 163 SEEGRIAITNSDGGILTLVETVED 186 (314)
Q Consensus 163 ~~~~~~~i~~~~g~v~~Lv~ll~~ 186 (314)
.....+..+ ....++.+-.+...
T Consensus 186 s~~~~Q~~l-~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 186 SSPENQERL-AEAFLPTLRTLSNA 208 (298)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHhC
Confidence 544333444 35677777776654
No 155
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.42 E-value=1.3 Score=44.92 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=94.3
Q ss_pred cCCCcceeeccccCCHHHHHHHHHHhHhhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CCh
Q 021317 7 ESPRGVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNK 83 (314)
Q Consensus 7 ~~~~~~~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~ 83 (314)
|.|+.+++.+-.-+++-.+..|++|+.+...++-.-.... -..+++.+..+++......+...+.++-.|..+- ...
T Consensus 608 eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~ 687 (1233)
T KOG1824|consen 608 ELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP 687 (1233)
T ss_pred hhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5577788877778888899999999984444443322211 2345788888887666677777777777666542 111
Q ss_pred hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC
Q 021317 84 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 144 (314)
Q Consensus 84 ~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~ 144 (314)
.... .-++..+-.++...+..+-..|...|..+.........-...-.++.++.+++++-
T Consensus 688 ~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl 747 (1233)
T KOG1824|consen 688 AELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL 747 (1233)
T ss_pred HHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc
Confidence 1111 22444555666677888889999999999988777666666778999999999864
No 156
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.35 E-value=4.7 Score=38.03 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=102.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCC----CChhHHhhcCcHHHHHHHhccC-------CHHHHHHHHHHHHHhcCCCC
Q 021317 54 LVELLKFQNGTLRELAAAAILTLSAAA----PNKPAIAASGAAPLLVQILHSG-------SVQGRVDAVTALHYLSTCKE 122 (314)
Q Consensus 54 Lv~lL~~~~~~~~~~a~~~L~~La~~~----~~~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~ 122 (314)
+..++...+.+-+..|+-....+..++ -+|..+.++=|.+.+=++|.+. +.-.+..++.+|...+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 444555556666777777777777754 3678899999999999999763 34557788889999999887
Q ss_pred Cc--hhhhhcCCcHHHHHHhhccCCc-----hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHH
Q 021317 123 NS--SPILDATAVPPLINLLKDCKKY-----SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQH 194 (314)
Q Consensus 123 ~~--~~i~~~g~i~~Lv~lL~~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~ 194 (314)
.. ..+++ .||.|++.+..+.+. ..+.+.+-.+|..+++.+.+...++ ..|+++.+.++-.-.+ ..-...
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhHHH
Confidence 44 44554 699999999765332 1256778899999999999988888 6999999987654322 122344
Q ss_pred HHHHHHHh
Q 021317 195 AVGALLSL 202 (314)
Q Consensus 195 A~~~L~~L 202 (314)
|+.++.-+
T Consensus 173 al~Vlll~ 180 (698)
T KOG2611|consen 173 ALKVLLLL 180 (698)
T ss_pred HHHHHHHH
Confidence 55554444
No 157
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.34 E-value=0.11 Score=41.87 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=94.3
Q ss_pred CCcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317 49 GAIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS 125 (314)
Q Consensus 49 g~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~ 125 (314)
..+..++..|.. ..+++|..++-++..+- +..+. -...-.-+.+-.++.+++.+....++.++..|-.. ++...
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345667766654 46778888888887762 11111 12222233444445554445677888888888744 34444
Q ss_pred hhh-hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHH-HHHHHHHHHHH
Q 021317 126 PIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLV-STQHAVGALLS 201 (314)
Q Consensus 126 ~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~-~~~~A~~~L~~ 201 (314)
.+. ..|.++.++.++.....+..+...++.+|..=|.+...|..+. ..+++-|-..++. .++. ++..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 444 6899999999998433445777888888876666666666666 4589999999964 4455 78888877654
No 158
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.31 E-value=0.66 Score=43.54 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=76.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC--------Cchhhhhc----CCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTC-KE--------NSSPILDA----TAVPPLINLLKDCKKYSKFAEKATALL 157 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~--------~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~~~a~~~L 157 (314)
.+..|+++|.+ +++...++.++.-|..+ ++ +-..+.+. -.+|.|++..+..++ ..+...+.+|
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~AL 347 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHH
Confidence 45677777766 66778888888888765 32 11222222 356777777766544 3566778888
Q ss_pred HHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317 158 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 158 ~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 207 (314)
.++..+-+.....-.-...+|.|++.|...+..++..++.+|..+....+
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 88877644322222113467888888888888999999999999997764
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.23 E-value=1 Score=45.13 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=122.8
Q ss_pred HhH-hhccCchhHHHHHhcCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHH--HHHHHhccCCH-H
Q 021317 31 GPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAP--LLVQILHSGSV-Q 105 (314)
Q Consensus 31 al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~--~Lv~lL~~~~~-~ 105 (314)
+++ ....++++-+.+.+.|+...+..++... +.+.+..+...+.|++...+.+........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 666 6778899999999999999999999754 56788899999999998765544443222222 22234444444 7
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHH-HHHHh
Q 021317 106 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT-LVETV 184 (314)
Q Consensus 106 ~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~-Lv~ll 184 (314)
.-..++++|..+..+.+. ....+.-+..-+++ .. ++.........+. ....+.. +..++
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-------------~e---~i~~~~~~~~~~~-~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-------------VE---AISRWLTSEIRVI-NDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-------------HH---HhhccCccceeeh-hhhhcchhHHHHh
Confidence 788888888888765443 11221111111111 11 2222232322222 1223333 55555
Q ss_pred hc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 021317 185 ED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLR 246 (314)
Q Consensus 185 ~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~ 246 (314)
.. ..+..+.+|++++.++....+ ++.+.+.+.|+++.+.+.-.. ....+++.+...+.++.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNK-EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcCh-hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 43 456778999999999999876 588888889999988875332 25666666666665543
No 160
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=1.3 Score=43.86 Aligned_cols=99 Identities=10% Similarity=0.115 Sum_probs=57.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh-----c----cCCchHHHHHHHHHHHHhc
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK-----D----CKKYSKFAEKATALLEILS 161 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~-----~----~~~~~~~~~~a~~~L~~L~ 161 (314)
.+--++++|.+++-+++..++.....|+.+. -+..++.+|+ + ..+..+.++.-..+++..+
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 4445556677777777777777777776543 2333444442 1 1223356666677777766
Q ss_pred CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 162 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
...+.- .+.+|+.|+.++.+.++......+..+...-.
T Consensus 388 v~Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~ie 425 (948)
T KOG1058|consen 388 VKFPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIE 425 (948)
T ss_pred hcChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 553322 23467899999988777654444444444433
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=7.1 Score=38.63 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=72.8
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
++..|-+++.+... .++-.++..++.|++.......+- .. .+.++..|+ ..+..++..|+..|..+|..+ +
T Consensus 330 ~~~~Lg~fls~rE~--NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---N 401 (938)
T KOG1077|consen 330 AVNQLGQFLSHRET--NIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---N 401 (938)
T ss_pred HHHHHHHHhhcccc--cchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---h
Confidence 45566666666543 566677777888887766666554 22 778888888 567899999999999999764 2
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
.+.| +.-|++++.+-++.+|+.-+-=+.-|+
T Consensus 402 ak~I-----V~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 402 AKQI-----VAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4444 556889998888888886665444554
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.79 E-value=0.91 Score=47.04 Aligned_cols=251 Identities=15% Similarity=0.068 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC----CCChhHHhhcCcHHHH
Q 021317 22 GYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA----APNKPAIAASGAAPLL 95 (314)
Q Consensus 22 ~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~----~~~~~~i~~~g~l~~L 95 (314)
.+.+..|+.-|. ++. .+++++ -..++|.++.++.++..++|..|+.+|..+-.. +..-.-|.-.=.+|.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 455667777666 332 223322 235689999999999999999999998885432 2233334444567888
Q ss_pred HHHhccC-CHHHHHHHHHHHHHhcC------------------CCCCchhhhh-----------cCCcHHHHHHhhccCC
Q 021317 96 VQILHSG-SVQGRVDAVTALHYLST------------------CKENSSPILD-----------ATAVPPLINLLKDCKK 145 (314)
Q Consensus 96 v~lL~~~-~~~~~~~a~~~L~nLs~------------------~~~~~~~i~~-----------~g~i~~Lv~lL~~~~~ 145 (314)
-.++.+. ...+|..=+..|.-|+. ++.+-+...+ .++-+..+.+|.+..+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 8888874 33444433444444442 1212111111 1111223334433321
Q ss_pred chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317 146 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 225 (314)
Q Consensus 146 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ 225 (314)
-++..-+..|.-||.... |+.- +.=.++.|+.+|.+.+..+|..-...+.-+|..-. ..-++++.+|-|.+
T Consensus 593 --~Vkr~Lle~i~~LC~FFG-k~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG----~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 593 --IVKRALLESIIPLCVFFG-KEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG----WRSVSEYLLPLLQQ 663 (1431)
T ss_pred --HHHHHHHHHHHHHHHHhh-hccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe----eeeHHHHHHHHHHH
Confidence 333333344444443211 1110 12245677777776666555444444444443321 11234567788888
Q ss_pred hhhcCCHHHHHHHHHHHHHhhcCCc-hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 226 LTVEGTFEAQERARTLLDLLRDTPQ-EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 226 ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
-+.++.+.+-..|.++|..|++... +|......++.+.+.|+ .-+.=.+..+..++....
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~---hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLC---HPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhee---CchHHHHHHHHHHHHHHH
Confidence 8888899999999999999987653 23333344444444444 223556777777665544
No 163
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.70 E-value=2.2 Score=40.03 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=85.6
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhh-------------hhHHHhccCCHHHHHHHhhcCCHHHHHHHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG-------------RIAITNSDGGILTLVETVEDGSLVSTQHAVG 197 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~ 197 (314)
.+..|++++.+. ++...+...+.-+..+ ++. |+++. .-.+|.|++..+..+...+...+.
T Consensus 272 ~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 272 LLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhcChhhHHHHHH
Confidence 456677777773 4445566666666665 322 45554 236788888888777778899999
Q ss_pred HHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317 198 ALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA 267 (314)
Q Consensus 198 ~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~ 267 (314)
+|.++-.+-|. ..+.. ...+|.|++-+...++.++..+..+|..+....++ .+. +-+..+|+.|.
T Consensus 346 ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~-~i~-~hl~sLI~~LL 412 (415)
T PF12460_consen 346 ALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE-LIS-EHLSSLIPRLL 412 (415)
T ss_pred HHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH-HHH-HHHHHHHHHHH
Confidence 99999988763 33332 45888889988888999999999999998876643 222 23334555543
No 164
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.62 E-value=0.31 Score=39.13 Aligned_cols=145 Identities=14% Similarity=0.041 Sum_probs=88.0
Q ss_pred HHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhh
Q 021317 92 APLLVQILHS--GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRI 168 (314)
Q Consensus 92 l~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~ 168 (314)
+..++..|.. ..+++|..+.-++..+- +..+....+ -+-+.+-.++..+..+ . ...+..++..+-.. ++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d-~-~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMD-S-LIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCC-H-HHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccch-h-HHHHHHHHHHHhCCCHHHHH
Confidence 3444555443 46677878877777762 222222221 1223333344443332 3 34566667666544 66677
Q ss_pred HHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHH-HHHHHHHHHHH
Q 021317 169 AITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFE-AQERARTLLDL 244 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~-~~~~A~~~L~~ 244 (314)
.+....|..+.++.++. +.+...+..++.+|..=|.+. . +...+...++++|-+..+. .++. +|-.|+-.|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~-~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK--S-CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--H-HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--H-HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77657899999999998 677888888888887766442 4 4444445669999998854 4565 77777766643
No 165
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.53 E-value=9.7 Score=38.77 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=91.7
Q ss_pred HHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhc----CCC----HHHHHHHHHHHHHhccC---CC---ChhHHh--
Q 021317 24 ARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLK----FQN----GTLRELAAAAILTLSAA---AP---NKPAIA-- 87 (314)
Q Consensus 24 ~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~----~~~----~~~~~~a~~~L~~La~~---~~---~~~~i~-- 87 (314)
.-...+..|..+..-..||+.+.+.|+++.|++.|. .+. +++-+.-+.++-.+... +. ......
T Consensus 138 ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~ 217 (802)
T PF13764_consen 138 LLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLS 217 (802)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccccc
Confidence 333444445578888999999999999999998873 333 45555555555444432 11 111111
Q ss_pred -----hcCcHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhh---ccCCchHHHHHHH
Q 021317 88 -----ASGAAPLLVQILHSG----SVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLK---DCKKYSKFAEKAT 154 (314)
Q Consensus 88 -----~~g~l~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~---~~~~~~~~~~~a~ 154 (314)
...-++.+++.+.++ ++.+....+++|-+|+...+.+ ..+++. ..+.+++=+ ...++.. .-+
T Consensus 218 ~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~---~~L 292 (802)
T PF13764_consen 218 GSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQ---FKL 292 (802)
T ss_pred ccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHH---HHH
Confidence 112366667766654 6888899999999999665433 333331 111111111 1111112 224
Q ss_pred HHHHHhcCC-------hhhhhHHHhccCCHHHHHHHhhcCCHH
Q 021317 155 ALLEILSSS-------EEGRIAITNSDGGILTLVETVEDGSLV 190 (314)
Q Consensus 155 ~~L~~L~~~-------~~~~~~i~~~~g~v~~Lv~ll~~~~~~ 190 (314)
.+++.++.. ..-|..++ +.|++...+.+|...-+.
T Consensus 293 e~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 293 ECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcc
Confidence 444444433 23477788 799999999999765443
No 166
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.47 E-value=4.2 Score=36.37 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=90.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
.|-+++..-++-.+-.|..+|.+|...++-|..+-. ..+-..++.+++..-...+++-+.+-++|-|+-.+...+.+-.
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344455555667889999999999999888776554 4566788888887544347788899999999888766644432
Q ss_pred ccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317 173 SDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 225 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ 225 (314)
...-+..|+.+++.. ..++-+.+++++.|++...+.+.-..+.-.|-+.+-++
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq 286 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQ 286 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHH
Confidence 234677888888764 36788889999999997444333333333343334444
No 167
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=7.2 Score=38.59 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=79.0
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
|.+..+++...+++..+|...+..|..+.........-+-.+....+..-+.+..|.+|..|..+|..+=.++.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 5555666666778889999999999988875444444455677788888888999999999999999987543211
Q ss_pred hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
+..+...+..+++.+ +.++++..| |.|++.++...-.+
T Consensus 161 e~~v~n~l~~liqnD-pS~EVRRaa---LsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQND-PSDEVRRAA---LSNISVDNSTLPCI 198 (892)
T ss_pred cccHHHHHHHHHhcC-CcHHHHHHH---HHhhccCcccchhH
Confidence 124566778888874 445777654 45666654443333
No 168
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=6.9 Score=40.78 Aligned_cols=219 Identities=19% Similarity=0.202 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHhccCCCChhHHhhc--CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHH
Q 021317 60 FQNGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP 135 (314)
Q Consensus 60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~~--g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~ 135 (314)
+.+..+|..+.+.|..++..+.......+. ..-..|..-+++.+...+...+.+|..|-... +....+.. .|+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence 346788999999999988774433322211 12223333344456667777777777776433 23333333 4555
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHhcCC----hhhhhHHHhccCCHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCc
Q 021317 136 LINLLKDCKKYSKFAEKATALLEILSSS----EEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 136 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~----~~~~~~i~~~~g~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~ 207 (314)
++-.+++.+. ..++.+..+|..++.. ++.... . ...|...+..+..+ +.......+-++..+....
T Consensus 743 vIL~~Ke~n~--~aR~~Af~lL~~i~~i~~~~d~g~e~-~--~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~- 816 (1176)
T KOG1248|consen 743 VILSLKEVNV--KARRNAFALLVFIGAIQSSLDDGNEP-A--SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF- 816 (1176)
T ss_pred HHHhcccccH--HHHhhHHHHHHHHHHHHhhhcccccc-h--HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence 5555555443 6677888888887731 111111 0 11444555555432 2322222233444443321
Q ss_pred HHHHHHHHH----cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHH
Q 021317 208 DKYRQLILK----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKR 282 (314)
Q Consensus 208 ~~~~~~i~~----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~ 282 (314)
..+.+ .+.+..+.-++.+.++++.+.|++.+..+...-++..+... ++.+++.+..+ .+.+-..+.+++-
T Consensus 817 ----~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 817 ----KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred ----hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11222 23455555577788999999999999888765544333332 22233333322 3445667788888
Q ss_pred HHHHHHHHH
Q 021317 283 LLQDMVQRS 291 (314)
Q Consensus 283 ~L~~l~~~s 291 (314)
+|..|.+..
T Consensus 892 LlekLirkf 900 (1176)
T KOG1248|consen 892 LLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHh
Confidence 888887654
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.27 E-value=0.58 Score=46.25 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=106.4
Q ss_pred HHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch-hhhh-cCCcHHHHHHhhcc
Q 021317 67 ELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS-PILD-ATAVPPLINLLKDC 143 (314)
Q Consensus 67 ~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~-~i~~-~g~i~~Lv~lL~~~ 143 (314)
..++.++.||+..+ ..|..|.++-+++.+-.++-..++..+..++..+.||..++..-. .+++ ...++.....+...
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 45788999999865 457778877777777777778899999999999999998876444 3555 45666666666553
Q ss_pred CCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH
Q 021317 144 KKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 222 (314)
Q Consensus 144 ~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~ 222 (314)
. +....++.+++..+....++. ..+..-......++.++.+++..++...+.+..|+.... .+....+.....++.
T Consensus 640 ~--E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 640 D--EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVMEL 716 (748)
T ss_pred h--hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHHHH
Confidence 2 244455556665455444432 223323456778899999999999999999999966443 244555555555555
Q ss_pred HHHh
Q 021317 223 LLRL 226 (314)
Q Consensus 223 Lv~l 226 (314)
+..+
T Consensus 717 l~~~ 720 (748)
T KOG4151|consen 717 LSGL 720 (748)
T ss_pred HHHH
Confidence 5443
No 170
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=93.24 E-value=5.4 Score=34.94 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=123.0
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhcc----CchhHHHHHh------c-CCcHHHHHHhcCC--CHHHHHHHHHHHHHhcc
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLS----KTRNKVKIAT------A-GAIPPLVELLKFQ--NGTLRELAAAAILTLSA 78 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~----~~~~~~~l~~------~-g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~ 78 (314)
-+.+|++.++..=..|+.-+. +... +++.+..+.+ . |..+-+..++-.+ ++...+.+...|..|+.
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~ 91 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTP 91 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhc
Confidence 467889999988888888877 4333 3344444431 2 5566666666444 45556667777877776
Q ss_pred CCCC--------hhHHhhcCcHHHHHHHhccCC----HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC--
Q 021317 79 AAPN--------KPAIAASGAAPLLVQILHSGS----VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK-- 144 (314)
Q Consensus 79 ~~~~--------~~~i~~~g~l~~Lv~lL~~~~----~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~-- 144 (314)
.+++ +-.+.=-+.+|.++.-+++++ ......++..|..++... +.+.+..++.....+.
T Consensus 92 ~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr 164 (262)
T PF14225_consen 92 LPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFR 164 (262)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCC
Confidence 4332 222223356777777777776 133456667888877332 1123333444443322
Q ss_pred CchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH
Q 021317 145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 224 (314)
Q Consensus 145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv 224 (314)
+..+....+...|+.-.. ++. +...+..|+++|.++.+.++...+.+|..+-... +.+.. ...+.+.+|+
T Consensus 165 ~~~dfl~~v~~~l~~~f~-P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~--d~~~~-~~~dlispll 234 (262)
T PF14225_consen 165 DKDDFLSQVVSYLREAFF-PDH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHV--DMRSP-HGADLISPLL 234 (262)
T ss_pred CHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc--cCCCC-cchHHHHHHH
Confidence 112333344444432110 111 1235557999999999999999999999988764 23333 4455788888
Q ss_pred HhhhcCCHHHHHHHHHHHHHh
Q 021317 225 RLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l 245 (314)
++++++- -..|..+|...
T Consensus 235 rlL~t~~---~~eAL~VLd~~ 252 (262)
T PF14225_consen 235 RLLQTDL---WMEALEVLDEI 252 (262)
T ss_pred HHhCCcc---HHHHHHHHHHH
Confidence 8887542 22344455443
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.23 E-value=1.1 Score=43.22 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH
Q 021317 147 SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 225 (314)
Q Consensus 147 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ 225 (314)
.+.+..|...+.....+ ++-... ++..++.+..+.+..+|..|...|..+|.+++ +.... .+..|++
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSK-----VADVLVQ 103 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhH-----HHHHHHH
Confidence 36677788888776655 444433 55689999999999999999999999998864 23322 4678899
Q ss_pred hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317 226 LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ 285 (314)
Q Consensus 226 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~ 285 (314)
++.++++......-.+|..|-+..+ .+.+.++...+.....+++..++++...|+
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~-----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDP-----KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9998887766666666666544222 344444444444222344556676666553
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.15 E-value=3.6 Score=42.97 Aligned_cols=225 Identities=13% Similarity=0.166 Sum_probs=125.5
Q ss_pred cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-----CCCc
Q 021317 51 IPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-----KENS 124 (314)
Q Consensus 51 v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-----~~~~ 124 (314)
++.+...+++- ..+.+..|+..|..|+..-+.-..+ ..++|-++.++.++...+|..|+.+|..+... +.+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 35555555442 5678889999999999854322222 35789999999999999999999988877532 2233
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc-------------------CChhh-----------hhHHHhcc
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-------------------SSEEG-----------RIAITNSD 174 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-------------------~~~~~-----------~~~i~~~~ 174 (314)
..+.+. .+|.|-.++.+.+.. .++..-+..|..|+ .++.+ ..++. .
T Consensus 502 niF~eY-lfP~L~~l~~d~~~~-~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~ 577 (1431)
T KOG1240|consen 502 NIFPEY-LFPHLNHLLNDSSAQ-IVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH--H 577 (1431)
T ss_pred hhhHhh-hhhhhHhhhccCccc-eehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--H
Confidence 333343 778888888774221 22211111111111 11111 11111 1
Q ss_pred CCHH-HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317 175 GGIL-TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 253 (314)
Q Consensus 175 g~v~-~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 253 (314)
.|. ..+.++.+.++-++..-+..+.-||..-. |+. -+.=.++.|+.++.+.|...|- +...++..-+- .
T Consensus 578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~k-sND~iLshLiTfLNDkDw~LR~---aFfdsI~gvsi--~ 647 (1431)
T KOG1240|consen 578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEK-SNDVILSHLITFLNDKDWRLRG---AFFDSIVGVSI--F 647 (1431)
T ss_pred -HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcc-cccchHHHHHHHhcCccHHHHH---HHHhhccceEE--E
Confidence 233 33344444455666666666666664321 110 0112678888999988877773 33334432221 1
Q ss_pred cchh-hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHH
Q 021317 254 LSSS-VLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 254 ~~~~-~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~s 291 (314)
++-. +-+-+++.|.+. .|+++.+-..|-..|.-|.+..
T Consensus 648 VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 648 VGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred EeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 1111 233344444433 4777778899999998888754
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.13 E-value=2.9 Score=37.35 Aligned_cols=170 Identities=17% Similarity=0.097 Sum_probs=105.5
Q ss_pred CCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCch
Q 021317 49 GAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSS 125 (314)
Q Consensus 49 g~v~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~ 125 (314)
+.+..|+ .-+++.++.+|+.|+.+|+-.+..+. .+. ...++.+...+..+++.++..|+.+|..+.... +.-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4444444 77789999999999999999887654 111 234677788887789999999999999987321 1111
Q ss_pred -------hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc----CCHHHHHH
Q 021317 126 -------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED----GSLVSTQH 194 (314)
Q Consensus 126 -------~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~----~~~~~~~~ 194 (314)
.......+..+.+.+.+.++ +++..+...++.|-....... ....+..|+-+--+ ++..++..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENP--ELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 12224566777777777633 677777777776544432221 02233344333322 33566666
Q ss_pred HHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 230 (314)
Q Consensus 195 A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~ 230 (314)
-...+-..|...+ +. +..+....++.+-.+.+..
T Consensus 176 L~~Ffp~y~~s~~-~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSP-EN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCH-HH-HHHHHHHHHHHHHHHHhCc
Confidence 6666666777664 33 4555556677777766543
No 174
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.01 E-value=3.6 Score=39.88 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHH
Q 021317 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILT 179 (314)
Q Consensus 101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~ 179 (314)
.+++..+.-|+..|......-+. ....++..+++++.+.+. .++..|..-|..+|.+ ++....++ ..
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~--~iR~~aik~lp~~ck~~~~~v~kva------Dv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDV--QIRKQAIKGLPQLCKDNPEHVSKVA------DV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSH--HHHHHHHHHGGGG--T--T-HHHHH------HH
T ss_pred cCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHhHHHHHhHHH------HH
Confidence 35788888888888877744322 123467788999988643 8889999999999987 45555555 48
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH-HhhcCCch----
Q 021317 180 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERARTLLD-LLRDTPQE---- 251 (314)
Q Consensus 180 Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~-~l~~~~~~---- 251 (314)
|+++|.++++.-...+-.+|..|-..++. +.+..|...+. .+++.+++.+..-|. .+-.-..+
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p 171 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTP 171 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS--
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhc
Confidence 99999988766666666666666555432 24455555443 578888998886553 33322211
Q ss_pred -hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----HHH---HHhHHHHHHHhhhcCCCCCC
Q 021317 252 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ----RSM---ELSMTRIQQRAASSAPSKIP 312 (314)
Q Consensus 252 -~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~----~s~---~~~~~~~~~~~~~~~~~~~~ 312 (314)
+.++.-+++.+ ..+. .|-+...=+..-.+|+.+.- .++ ..-+..+...|.++.|-+.+
T Consensus 172 ~~E~e~~i~~~i-kkvL--~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 172 QKEMEEFIVDEI-KKVL--QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPS 237 (556)
T ss_dssp -HHHHHHHHHHH-HHHC--TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SS
T ss_pred hHHHHHHHHHHH-HHHH--HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCc
Confidence 11222222222 2222 23344444556666666653 123 23355566677777765443
No 175
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.98 E-value=7 Score=35.96 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=111.2
Q ss_pred cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHH
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv 96 (314)
+.....|..++..|.-=..+++.+..+...|.+..+++.+.. ++..+...++.++.. ++.+..+-..+.+.+.+..++
T Consensus 33 ~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~ 112 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLL 112 (361)
T ss_pred CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHH
Confidence 344567777777777333578999999999999999999943 333244444444444 443333333333444555555
Q ss_pred HHhc--cC-------C-----------------------------------HHHHHHHHHHHHHhcC-------------
Q 021317 97 QILH--SG-------S-----------------------------------VQGRVDAVTALHYLST------------- 119 (314)
Q Consensus 97 ~lL~--~~-------~-----------------------------------~~~~~~a~~~L~nLs~------------- 119 (314)
+++. .. + ..-+.-|..+|..++.
T Consensus 113 ~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~ 192 (361)
T PF07814_consen 113 KLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSS 192 (361)
T ss_pred HHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhh
Confidence 5555 00 0 0112223333333320
Q ss_pred --CCCCchhhhhcCCcHHHHHHhhc----cC-----C-----chHHHHHHHHHHHHhcCC-hhhhhHHHhcc-CCHHHHH
Q 021317 120 --CKENSSPILDATAVPPLINLLKD----CK-----K-----YSKFAEKATALLEILSSS-EEGRIAITNSD-GGILTLV 181 (314)
Q Consensus 120 --~~~~~~~i~~~g~i~~Lv~lL~~----~~-----~-----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~-g~v~~Lv 181 (314)
.+.-|+.+...|++..+++++.+ .. + .......++.+|-+.+.. .+++....... +.++.+.
T Consensus 193 ~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~ 272 (361)
T PF07814_consen 193 RAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLL 272 (361)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHH
Confidence 11235556667889999999862 10 0 012346788888887655 45665554322 2333322
Q ss_pred H-Hhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC
Q 021317 182 E-TVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG 218 (314)
Q Consensus 182 ~-ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g 218 (314)
. ++. .........+++.+.|++.+++ +..+.+...+
T Consensus 273 ~~l~~~~~~~~~~~l~~~lrlllNlTn~n~-~~c~~~~s~~ 312 (361)
T PF07814_consen 273 STLLRQCDDQVIQLLLLALRLLLNLTNNNP-SACEEFASPK 312 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeeCCCCCc-cchHhhhhhH
Confidence 2 222 2234456789999999998886 4555565543
No 176
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.98 E-value=0.58 Score=39.94 Aligned_cols=83 Identities=28% Similarity=0.264 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcCCcHH-------HHHHhhccCCchHHHHHHHHHHHHhcCChhh-hhHHHhccCC
Q 021317 105 QGRVDAVTALHYLSTCKENSSPILDATAVPP-------LINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGG 176 (314)
Q Consensus 105 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~-------Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~ 176 (314)
.-+..|+.+|+.|+..+.|-+.+...+-... |++++.. ..++-.++-|..+|++|+..++. ...+..+.++
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~-~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM-REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3478999999999999999999988664443 3444444 34457889999999999988654 3345557899
Q ss_pred HHHHHHHhhcCC
Q 021317 177 ILTLVETVEDGS 188 (314)
Q Consensus 177 v~~Lv~ll~~~~ 188 (314)
|..|+.++.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999997643
No 177
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.93 E-value=0.34 Score=39.85 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=67.2
Q ss_pred HHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcC---------CCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHH
Q 021317 27 LNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKF---------QNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPL 94 (314)
Q Consensus 27 ~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~ 94 (314)
..+..|. .+...+ .--..|++.||+..|+++|.. .+.+....++.+|..|..+..+...+. ..+++..
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence 4444555 333333 344677788999999998832 245678888999999988876666665 6899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLS 118 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs 118 (314)
++..|.+++..++..++..|..+|
T Consensus 163 i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 163 IALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998775
No 178
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.84 E-value=1.2 Score=37.64 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh---ccCCchHHHHHHHHHHHHhcCChh--hhhHHHhccCCHHH
Q 021317 105 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCKKYSKFAEKATALLEILSSSEE--GRIAITNSDGGILT 179 (314)
Q Consensus 105 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~g~v~~ 179 (314)
.-..+++..|..+++.++.|..++++.+--.+-..|. +..+-+-++-.+++++..|..+++ ....+. ...+||.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence 3457788889999999999999999765444444443 333333456778999999887743 345555 6889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHH----Hc----CChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 180 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL----KE----GAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 180 Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~----~~----g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
+++++..+++.-+..|..++..+-.++ ..-+.+. +. ..+..++. +...++.+.-+++.++--.|+..+.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 999999999888888998888776554 2222222 21 23333443 4455778888888888777877664
No 179
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.79 E-value=0.56 Score=39.60 Aligned_cols=144 Identities=17% Similarity=0.068 Sum_probs=93.3
Q ss_pred HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC--hhHHhhcCcHHHHHH
Q 021317 25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQ 97 (314)
Q Consensus 25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~~Lv~ 97 (314)
...|+..|.-...+++.|..+.++.+--.+-.+|.. +.+..|..++.+++.|..+++. -..+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 334444444556679999999888775555566632 2345788889999999887653 344557899999999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc----CCc----HHHHHHh-hccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILDA----TAV----PPLINLL-KDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~----g~i----~~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
+++.+++-.+..|+.++..+..++..-..+-+. -++ ..++.-+ +.+. .++...+.++.-.||..+..|.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~--~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGS--TRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHheeecCCHhHHH
Confidence 999999999999999998888777665554431 112 2222222 2222 2555566666555665555554
Q ss_pred HH
Q 021317 169 AI 170 (314)
Q Consensus 169 ~i 170 (314)
.+
T Consensus 275 lL 276 (315)
T COG5209 275 LL 276 (315)
T ss_pred HH
Confidence 43
No 180
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.74 E-value=0.84 Score=39.96 Aligned_cols=173 Identities=16% Similarity=0.052 Sum_probs=102.2
Q ss_pred HHHHHHHHHhHhhccCchhHHHHHhcC--CcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCCChhHHhhcC--cHHH
Q 021317 23 YARRLNLMGPLWQLSKTRNKVKIATAG--AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASG--AAPL 94 (314)
Q Consensus 23 ~~~~~a~~al~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~~ 94 (314)
+.+--++..++++.-++..-..+...+ ....+..++.. ..+..+.-++++++|+-.++.++..+.+.. .+..
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 445566666665555666555555433 23444444432 367788899999999999999888887543 3444
Q ss_pred HHHHhccC----CHHHHHHHHHHHHHhcCC-CCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 95 LVQILHSG----SVQGRVDAVTALHYLSTC-KENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 95 Lv~lL~~~----~~~~~~~a~~~L~nLs~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
.+..+... +..++..++..+.|++.. ...+ ..=.....+..+++.+.....+++....++-++.+|...++...
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 44444444 688999999999999842 1111 11111224555556444333345777888999999997777766
Q ss_pred HHHhccCCHHHHHHHh-hcCCHHHHHHH
Q 021317 169 AITNSDGGILTLVETV-EDGSLVSTQHA 195 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll-~~~~~~~~~~A 195 (314)
......|+-..+-..- ...++.+++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 238 QLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 6663233333333332 22345555544
No 181
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.62 E-value=2 Score=38.99 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=147.2
Q ss_pred HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChh-----HHh-h-cCcHHHHHHHhccCCHHHHHHHHHHHH
Q 021317 44 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKP-----AIA-A-SGAAPLLVQILHSGSVQGRVDAVTALH 115 (314)
Q Consensus 44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~-----~i~-~-~g~l~~Lv~lL~~~~~~~~~~a~~~L~ 115 (314)
.+...|.+..|+..|..-+-+.+..++....++-... +++. .+. . ...+..|+..-+ ++++-..+...|+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHH
Confidence 4456788899999998888899999999999877643 3332 232 2 334444444433 4556667778888
Q ss_pred HhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHH-hcCChhhhhHHHhc--cCCHHHHHHHhhcCCHHHH
Q 021317 116 YLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI-LSSSEEGRIAITNS--DGGILTLVETVEDGSLVST 192 (314)
Q Consensus 116 nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~--~g~v~~Lv~ll~~~~~~~~ 192 (314)
.....+.....+.....+..+.+..+.+ ..++...|..++.. |..+...-...... ...+...-.+|.+++--++
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 8888887777888877888888888775 34777788888876 45655554444421 1345677788888898899
Q ss_pred HHHHHHHHHhhccCcH-HHHHHHH-HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcc--hhhhHHHHHHH
Q 021317 193 QHAVGALLSLCQSCRD-KYRQLIL-KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS--SSVLEKIVYDI 266 (314)
Q Consensus 193 ~~A~~~L~~L~~~~~~-~~~~~i~-~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~--~~~~~~lv~~l 266 (314)
..++..|..|-.+..+ ......+ +..-+..++.++++.+..+|-.|.-+..-+...+.. ++.. ..=.+.++..+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999998766433 2222333 345688888999999999999999999888766642 2222 22344666666
Q ss_pred hh
Q 021317 267 AA 268 (314)
Q Consensus 267 ~~ 268 (314)
..
T Consensus 307 ~~ 308 (335)
T PF08569_consen 307 KD 308 (335)
T ss_dssp HT
T ss_pred Hh
Confidence 63
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.20 E-value=0.53 Score=32.45 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 107 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 107 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
++.|++++.+++..+.....+.+.++++.++++....+. ..++-.|.-+|.-++...+..+.+- +.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T~~G~~~L~-~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISSTEEGAEILD-ELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCCHHHHHHHH-HcC
Confidence 478999999999998888888888999999999988644 3778888888988899888887775 454
No 183
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.19 E-value=4.2 Score=37.69 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CC---CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 22 GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQ---NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 22 ~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~---~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
+.+--.|+..+. .....|..-..+.+.|.++.+++.+. .+ +.++...--.+|..|+.+..+.+.+.+.+.++.++
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 455566666677 77778888888889999999999887 43 56777777788999999999999999999999999
Q ss_pred HHhccC
Q 021317 97 QILHSG 102 (314)
Q Consensus 97 ~lL~~~ 102 (314)
+++.++
T Consensus 203 ~if~s~ 208 (379)
T PF06025_consen 203 EIFTSP 208 (379)
T ss_pred HHhCCH
Confidence 887653
No 184
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.19 E-value=0.94 Score=31.21 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219 (314)
Q Consensus 150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~ 219 (314)
.+.++.++.|+++.+.....+- +.+.++.++++..+ +...+|--|..+|.-++... +..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~--~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE--EGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH--HHHHHHHHcCC
Confidence 3578999999999888887777 68999999999975 45889999999999999764 56777777664
No 185
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.07 E-value=6.3 Score=39.78 Aligned_cols=220 Identities=14% Similarity=0.041 Sum_probs=115.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcC
Q 021317 53 PLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT 131 (314)
Q Consensus 53 ~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 131 (314)
.++..+++..+.++..-...+..+-.. +..-.......-+|.++.+-.+...+++......+.-++.... ..+.+.-
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~ 518 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEK 518 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHH
Confidence 334444444555555444433332221 2222333344556666666555566777777777776664432 2222221
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR 211 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~ 211 (314)
.-+.+...+.+. .-.++++|+..+..++.... ..... .-.++.++.+..+++-..|...+.++..++.-- -
T Consensus 519 ~~~l~~~~l~d~--v~~Ir~~aa~~l~~l~~~~G-~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~----g 589 (759)
T KOG0211|consen 519 LAELLRTWLPDH--VYSIREAAARNLPALVETFG-SEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL----G 589 (759)
T ss_pred HHHHHHhhhhhh--HHHHHHHHHHHhHHHHHHhC-cchhH--HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh----c
Confidence 122222222221 12566777777766665433 22222 235677777776665556666666666555322 2
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317 212 QLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD 286 (314)
Q Consensus 212 ~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~ 286 (314)
..+.....++.+.++..+..+.+|-+++..|..+-..-.....+. .+.++...|.. |.+.+.+..|..+...
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~-~v~pll~~L~~--d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE-EVLPLLETLSS--DQELDVRYRAILAFGS 661 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH-HHHHHHHHhcc--CcccchhHHHHHHHHH
Confidence 334445678889999999999999999999988765433222222 22234344442 3333444444444333
No 186
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=1.6 Score=41.11 Aligned_cols=153 Identities=13% Similarity=0.051 Sum_probs=91.8
Q ss_pred CcHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh
Q 021317 90 GAAPLLVQIL----HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 165 (314)
Q Consensus 90 g~l~~Lv~lL----~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 165 (314)
|.+..++..+ .+++...+..|+..|.|.+.....+..--..-.+..++.-|-++.. .++.-.++.+|..+..-..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhh
Confidence 4444444443 4567788999999999999763322222222244455555555433 3676667776665443333
Q ss_pred h---hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCCHHHHHHHHH
Q 021317 166 G---RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERART 240 (314)
Q Consensus 166 ~---~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~~~~~A~~ 240 (314)
+ ...++ .+.-.+..+.++.+++.+..|...+..|+.......++.+.+ .+...+++-.+.+.+|.+-.++-.
T Consensus 333 ~~~l~~~~l---~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 333 NDDLESYLL---NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hcchhhhch---hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 3 33333 244567778888888888888888777765433344555654 344555666677778877766666
Q ss_pred HHHHhh
Q 021317 241 LLDLLR 246 (314)
Q Consensus 241 ~L~~l~ 246 (314)
.++.+.
T Consensus 410 ~~~~c~ 415 (533)
T KOG2032|consen 410 ELRTCY 415 (533)
T ss_pred HHHhcC
Confidence 666553
No 187
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=1.4 Score=38.94 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=88.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-hh
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RI 168 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~ 168 (314)
++...+..|.+.+.+.+...+..|..|+. .++....... ..|..+++-++.. +..+...|+-++..+.+.-.+ ..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888899999999999999984 4433333222 3566666666664 336666677666666544222 22
Q ss_pred HHHhccCCHHHHHH-Hhhc---CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 169 AITNSDGGILTLVE-TVED---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~-ll~~---~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
. ....++. ++.. ++.=+++.|..+|-.+..+-.. . -+++.|+..+++..++++..++.+..+
T Consensus 166 ~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~------~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 166 Q------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--Q------KLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred H------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--H------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2 2223333 3332 3345788888888888866432 1 256777778888999999888776655
Q ss_pred h
Q 021317 245 L 245 (314)
Q Consensus 245 l 245 (314)
+
T Consensus 232 ~ 232 (334)
T KOG2933|consen 232 C 232 (334)
T ss_pred c
Confidence 4
No 188
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.35 E-value=1.5 Score=38.37 Aligned_cols=158 Identities=20% Similarity=0.129 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcC--CcHHHHHHhhccC--CchHHHHHHHHHHHHhcCChhhh
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGR 167 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~lL~~~~--~~~~~~~~a~~~L~~L~~~~~~~ 167 (314)
...+...+...+++-+.-++..++-+..++..-..+...+ ....+..++.... .....+-.++++++|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4455666666666667788888888877766555554432 3555666665543 33466778999999999999999
Q ss_pred hHHHhccC-CHHHHHHHhhcC----CHHHHHHHHHHHHHhhccCcHHHH-HHHHHcCChHHHHHhh-hc-CCHHHHHHHH
Q 021317 168 IAITNSDG-GILTLVETVEDG----SLVSTQHAVGALLSLCQSCRDKYR-QLILKEGAIPGLLRLT-VE-GTFEAQERAR 239 (314)
Q Consensus 168 ~~i~~~~g-~v~~Lv~ll~~~----~~~~~~~A~~~L~~L~~~~~~~~~-~~i~~~g~v~~Lv~ll-~~-~~~~~~~~A~ 239 (314)
..+....+ .+...+..+... +..++..++..+.|++-.... .+ ..-.....+..+.+.+ .. .+++....+.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~-~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK-NRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH-CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 98885444 344444434333 577888888888998753210 01 0000111344455522 22 5889999999
Q ss_pred HHHHHhhcCCc
Q 021317 240 TLLDLLRDTPQ 250 (314)
Q Consensus 240 ~~L~~l~~~~~ 250 (314)
.+|.+|...+.
T Consensus 224 vAlGtL~~~~~ 234 (268)
T PF08324_consen 224 VALGTLLSSSD 234 (268)
T ss_dssp HHHHHHHCCSH
T ss_pred HHHHHHhccCh
Confidence 99999986553
No 189
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.13 E-value=13 Score=34.53 Aligned_cols=125 Identities=11% Similarity=0.081 Sum_probs=88.6
Q ss_pred CcHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCCchh-hhhcCCcHHHHHHhh-ccC-CchHHHHHHHHHHHHhcCC
Q 021317 90 GAAPLLVQILHSG---SVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLK-DCK-KYSKFAEKATALLEILSSS 163 (314)
Q Consensus 90 g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~Lv~lL~-~~~-~~~~~~~~a~~~L~~L~~~ 163 (314)
..+..|..++++. .+.+-..|+.++..+..+++..-. +.+.|.++.+++.+. .+- +..++....-.++..||-+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 3444555556655 467888999999999977776655 456899999999998 432 3345555566778899999
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcCC-------HHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 164 EEGRIAITNSDGGILTLVETVEDGS-------LVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~~-------~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
.++.+.+. +.+.++.+++++.+.+ .+....--..+-.|..+.| ..|..+++
T Consensus 186 ~~Gl~~~~-~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p-~Lk~~i~~ 243 (379)
T PF06025_consen 186 NRGLEKVK-SSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP-SLKPDIID 243 (379)
T ss_pred HHHHHHHH-hcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH-HHHHHHHH
Confidence 99999999 6899999999996532 1223334445566777765 66666665
No 190
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.93 E-value=1.8 Score=37.48 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=73.9
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
..|-.+++-+..++.-.|..++.+++-|-.. -+|+.|.+.|.+....+-++..|..+|..++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 3566777777778888888888888766433 38999999999877777788888888877654
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
..+++.|.+++++..+-+++.|..+|..+-..
T Consensus 250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 45788899999988888888888888765543
No 191
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.77 E-value=0.33 Score=45.43 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=89.5
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-----CC---ChhHHhhcCcHHHHHHHhc---cCCHHHHHHHHHHHHH
Q 021317 48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAA-----AP---NKPAIAASGAAPLLVQILH---SGSVQGRVDAVTALHY 116 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-----~~---~~~~i~~~g~l~~Lv~lL~---~~~~~~~~~a~~~L~n 116 (314)
......++..+.+..-..++.++++++|++.. +. ....+. .--+..+++.-. -.+.+++.++..+|.|
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 34445555666555667889999999998862 11 122221 122333333322 2356899999999999
Q ss_pred hcCCCC-C-c--hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhc-CCHH
Q 021317 117 LSTCKE-N-S--SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVED-GSLV 190 (314)
Q Consensus 117 Ls~~~~-~-~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~-~~~~ 190 (314)
+.+--+ . . -.....|.+..+....-.. ...+++.+++-++.||-.++..+-+-.+ ..-..+.|..++.+ .+-+
T Consensus 511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 511 LLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred HHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 984211 1 1 1111123333332222111 1237889999999999988765322211 12356778887765 4578
Q ss_pred HHHHHHHHHHHhhc
Q 021317 191 STQHAVGALLSLCQ 204 (314)
Q Consensus 191 ~~~~A~~~L~~L~~ 204 (314)
+|..|+++|..-..
T Consensus 590 VRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 590 VRIRAAAALSVPGK 603 (728)
T ss_pred EeehhhhhhcCCCC
Confidence 88899988876554
No 192
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.47 E-value=22 Score=36.09 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh
Q 021317 20 FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL 99 (314)
Q Consensus 20 ~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL 99 (314)
.+++++..+..-+...+.... ......++++.++++..+....+++.|...+.++...-.... =...-..+.+++..
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~ 325 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAV 325 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHh
Confidence 344555554444442221111 155677888999999988888899999888888766311110 12234567777777
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCc---------------------hHH-HHHHHHHH
Q 021317 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY---------------------SKF-AEKATALL 157 (314)
Q Consensus 100 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---------------------~~~-~~~a~~~L 157 (314)
.+++..++.........|...-+- ......-+++...++++...+ ..+ ....+-.+
T Consensus 326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~ 403 (759)
T KOG0211|consen 326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV 403 (759)
T ss_pred cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence 777776666655555444421000 011111122222222111000 000 00111222
Q ss_pred HHhcCChh--hhhHHHh----------c----cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH
Q 021317 158 EILSSSEE--GRIAITN----------S----DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP 221 (314)
Q Consensus 158 ~~L~~~~~--~~~~i~~----------~----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~ 221 (314)
..++.+.. .+..... . .-..|.++..+++..+.++.+-...+..+-..++ ...........++
T Consensus 404 ~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~-v~g~~~~s~slLp 482 (759)
T KOG0211|consen 404 QVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND-VIGISTVSNSLLP 482 (759)
T ss_pred HHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC-cccchhhhhhhhh
Confidence 22222211 1111110 0 1124555666666677777777765544433332 2233344445677
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHH
Q 021317 222 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 222 ~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+..+..+..-+++.....-+..++........... +...+..+ .+....+++.|...|..++..
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~----~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~ 548 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK----LAELLRTWLPDHVYSIREAAARNLPALVET 548 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH----HHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence 777777666666666666666666553322222222 22222222 233346778888888777744
No 193
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.45 E-value=12 Score=37.25 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC
Q 021317 65 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 144 (314)
Q Consensus 65 ~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~ 144 (314)
+...++..+..+-..+..-. ++ .|.+..+++-.++++..+|..++..|.-++....-...-+-.+....+..-+.+..
T Consensus 62 Il~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 34444444444443322111 22 56777888888899999999999999999875444444444566666666666654
Q ss_pred CchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHH
Q 021317 145 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGAL 199 (314)
Q Consensus 145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L 199 (314)
+ .++..|.-+|+.+=.++.+- +..++..+..+++. +++++|..|+..+
T Consensus 140 p--~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 P--NVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred c--hHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 4 67778888887765432211 22355577888875 5688888776443
No 194
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=1.5 Score=45.30 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=95.7
Q ss_pred cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
.++|++|..|..||. +..-+.+ +++ --.|.|+..+. ++++-+|.+++.+++.++..-.+- + .-.-+.|-
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---i-e~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---I-EPWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc---c-chhhHHHH
Confidence 356999999999998 6665533 333 23688999997 889999999999999998742221 1 22345677
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
..|.+.++.+|..|.-+|.+|-.++ +++ .|-+..+..++.+++. .+...|-.....|+.-
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~--~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNA--EISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcH--HHHHHHHHHHHHhhhc
Confidence 8889999999999999999998654 333 6888888999988654 7777676666655543
No 195
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.35 E-value=1.3 Score=37.79 Aligned_cols=84 Identities=23% Similarity=0.150 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChhhhhHHHhccCC-------HHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH
Q 021317 150 AEKATALLEILSSSEEGRIAITNSDGG-------ILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP 221 (314)
Q Consensus 150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~-------v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~ 221 (314)
+..|+.+|+.|+..+.|-.-+. ..+- +..|++++.. ++.-.||-|+..|.+||..+....|..-.+.+.|.
T Consensus 141 qrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 5679999999999888877666 3444 3455555543 56788999999999999987544444445689999
Q ss_pred HHHHhhhcCCHHH
Q 021317 222 GLLRLTVEGTFEA 234 (314)
Q Consensus 222 ~Lv~ll~~~~~~~ 234 (314)
.|+.++.+.+...
T Consensus 220 ~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 220 HLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998765433
No 196
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.91 E-value=14 Score=34.89 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHH
Q 021317 62 NGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLI 137 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv 137 (314)
..+-++.|..-|..+... ...-+.=.-...+..+++.|.+ .+...+..|+++|..++.+...+ +.+ .=++..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHH
Confidence 344556666655554432 2222222223456677888888 67888999999999999765322 222 22444555
Q ss_pred HHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-
Q 021317 138 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK- 216 (314)
Q Consensus 138 ~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~- 216 (314)
+.-.+..+. -+..++=.++.-++++..-+. |..+..++.+.+....-.++..+-.++..-+ ++.+..
T Consensus 378 eaa~ds~~~-v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~---~EeL~~l 445 (516)
T KOG2956|consen 378 EAAKDSQDE-VMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLS---AEELLNL 445 (516)
T ss_pred HHHhCCchh-HHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC---HHHHHHh
Confidence 554444331 222333334444555544332 2233344444444444445556666665432 344443
Q ss_pred -cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 217 -EGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 217 -~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
....|.+++--.+.+..+|+.|+.+|-.+
T Consensus 446 l~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 56889999988888999999999887665
No 197
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=18 Score=39.01 Aligned_cols=236 Identities=15% Similarity=0.085 Sum_probs=116.5
Q ss_pred cccCCCcceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHh--cCCcHHHHHHhcCCCHHHHHHH---HHHHHHhcc
Q 021317 5 CWESPRGVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIAT--AGAIPPLVELLKFQNGTLRELA---AAAILTLSA 78 (314)
Q Consensus 5 ~~~~~~~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~~~~~~~~a---~~~L~~La~ 78 (314)
+||=-+-+++. +.+....+|+.++.||. +..+.+... +.+ .-.+..+.+.+++-.+.+|+.| +.+|..|+.
T Consensus 1037 ~neIl~eLL~~-lt~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1037 LNEILDELLVN-LTSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34433333333 46777899999999999 776654422 222 2345556666666566777655 445554443
Q ss_pred C--CC-C--hhHHhhcCcHHHHHHH--hccCCHHHHHHHHHHHHHhcCCCCC--chhhhhcCCcHHHHHHhhccCCchHH
Q 021317 79 A--AP-N--KPAIAASGAAPLLVQI--LHSGSVQGRVDAVTALHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKF 149 (314)
Q Consensus 79 ~--~~-~--~~~i~~~g~l~~Lv~l--L~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~ 149 (314)
. +. + +..=.-..++|.|+.- + +.-+++|..++.++..|+.+... +..+ ...||.|++....-.+ ..+
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~-~vL 1189 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEP-QVL 1189 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccch-HHH
Confidence 1 11 1 1111112345554432 2 44578999999999999955432 2222 2356666666654322 111
Q ss_pred HHHHHHHHHHhcCC--hhhhhHHHhc-------------------cCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCc
Q 021317 150 AEKATALLEILSSS--EEGRIAITNS-------------------DGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 150 ~~~a~~~L~~L~~~--~~~~~~i~~~-------------------~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~~~~ 207 (314)
-..++++ .|.... +.-|..+... ...+|.+.++++++ ....+--++..+..|+..-+
T Consensus 1190 nYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1190 NYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred HHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc
Confidence 1112221 111110 1111111110 12455666666542 12223334444444442211
Q ss_pred HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
.+..-. ....+..+...+++.++.+++..+.+...|.+.+.
T Consensus 1269 ~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1269 SEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred cccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 110000 01245556666777889999888888888876553
No 198
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.62 E-value=11 Score=38.31 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=115.0
Q ss_pred hHHHHHhcCCcHHHH----HHhcCCCHHHHHHHHHHHHHhccCCCChhHH-hhcCcHHHHHHH-hccCCHHHHHHHHHHH
Q 021317 41 NKVKIATAGAIPPLV----ELLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQI-LHSGSVQGRVDAVTAL 114 (314)
Q Consensus 41 ~~~~l~~~g~v~~Lv----~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i-~~~g~l~~Lv~l-L~~~~~~~~~~a~~~L 114 (314)
+...+-..++.+.+. .-+.+.+..-+..|+..+........ +... ...|.+..++.. +.+.+..+...++..|
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l 319 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQIL 319 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHH
Confidence 333333445444333 33345667777778777777555443 1111 122333344443 2455778888888888
Q ss_pred HHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHH
Q 021317 115 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 194 (314)
Q Consensus 115 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~ 194 (314)
.-++..-..-..=...+..+.+++-+.+... .+++....++-.++. ...-....+.+..+++++++.++..
T Consensus 320 ~~ia~~lr~~~~~~~~~v~p~lld~lkekk~--~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~ 390 (815)
T KOG1820|consen 320 ELIAKKLRPLFRKYAKNVFPSLLDRLKEKKS--ELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGE 390 (815)
T ss_pred HHHHHhcchhhHHHHHhhcchHHHHhhhccH--HHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHH
Confidence 8887432111111124678888888887544 566666555544333 1112335667888899999998888
Q ss_pred HHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 195 A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+...+.-............-.-.+.++.++....+.+..+|..|..++.-+-+
T Consensus 391 ~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 391 CLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 77666544432211111111113578888888889999999999988777644
No 199
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.39 E-value=2 Score=31.43 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=64.4
Q ss_pred HHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc
Q 021317 23 YARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH 100 (314)
Q Consensus 23 ~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~ 100 (314)
++|..|+..+. -..++--.-..+. ..+.+..|++-...++....+.++..+..+..++.....+.+-|++..|-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 57788888766 3332222223333 445556666666766666888899999999999999999999999999777765
Q ss_pred cCCHHHHHHHHHHHH
Q 021317 101 SGSVQGRVDAVTALH 115 (314)
Q Consensus 101 ~~~~~~~~~a~~~L~ 115 (314)
..++..+...-.++.
T Consensus 82 ~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 82 NVEPNLQAEIDEILD 96 (98)
T ss_pred cCCHHHHHHHHHHHh
Confidence 566666655554443
No 200
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.04 E-value=15 Score=34.68 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHhH-hhccC-chhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH
Q 021317 21 EGYARRLNLMGPL-WQLSK-TRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 97 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~-~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~ 97 (314)
..+.++.|+..|. ....+ ..-+..... -.+..+++.|.+ .++..+..|++.|..+..+...+-.=...-++..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 4556777777666 44433 333333222 234567788876 6788999999999999876543222122345666666
Q ss_pred HhccCCHHHHHHHHH-HHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhcc
Q 021317 98 ILHSGSVQGRVDAVT-ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSD 174 (314)
Q Consensus 98 lL~~~~~~~~~~a~~-~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~ 174 (314)
.-.+..+++...|.. ++.-++...+.+ .|..+..++...++ +....++..+..+... .+.-..++ .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~--~~~~~~iKm~Tkl~e~l~~EeL~~ll--~ 447 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADE--PRAVAVIKMLTKLFERLSAEELLNLL--P 447 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcc--hHHHHHHHHHHHHHhhcCHHHHHHhh--h
Confidence 666666666555544 455555433222 23333444444322 3333444445555443 22333333 4
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 175 GGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
...|.+++.-.+.+..+|..|+.||-.+...
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 5888899988999999999999999887643
No 201
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.94 E-value=2.2 Score=33.65 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=61.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~ 247 (314)
++..|..-|.+.++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++....++...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 455777777888999999999999999998877788888889999999998887 789999999998888764
No 202
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=3.5 Score=44.04 Aligned_cols=173 Identities=15% Similarity=0.100 Sum_probs=99.9
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
.||.|.+.=.+|+..++.. ..-+|| |..++.....-.-...++-|+.-|.+..-++|+.++.+|..|-...++-...-
T Consensus 999 LIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 3566666656777777754 455566 54443333333345677788888888899999999999999998765433322
Q ss_pred h-cCCcHHHHHHhhccCCchHHH---HHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh-----cCCHHHHHHHHHH
Q 021317 129 D-ATAVPPLINLLKDCKKYSKFA---EKATALLEILSSS-EEGRIAITNSDGGILTLVETVE-----DGSLVSTQHAVGA 198 (314)
Q Consensus 129 ~-~g~i~~Lv~lL~~~~~~~~~~---~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~-----~~~~~~~~~A~~~ 198 (314)
. ...+..+...+.+=.+ .++ +.++.+|..|+.. .+.-.-. ....++..++.+|- +.-++++.-++.+
T Consensus 1078 ~lpelw~~~fRvmDDIKE--sVR~aa~~~~~~lsKl~vr~~d~~~~~-~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKE--SVREAADKAARALSKLCVRICDVTNGA-KGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcccCCcc-cHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 2 3466667777665322 333 4455666655432 1110000 00112333333332 3347899999999
Q ss_pred HHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317 199 LLSLCQSCRDKYRQLILKEGAIPGLLRLTV 228 (314)
Q Consensus 199 L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 228 (314)
+..|+.+.+...+..+ ...++.|+....
T Consensus 1155 l~dl~Kssg~~lkP~~--~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHF--PKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHhchhhhcchh--hHHHHHHHHHcc
Confidence 9999988653222222 235555555443
No 203
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=12 Score=38.70 Aligned_cols=150 Identities=18% Similarity=0.118 Sum_probs=94.4
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHH
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDK 209 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~ 209 (314)
+++..|+..+++.+. .++..|+.-+.-+....+ ..+. ..+|...+.++.-.+ +..-.-|+-+|+.|+...--
T Consensus 341 ~vie~Lls~l~d~dt--~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL- 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT--VVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL- 413 (1133)
T ss_pred HHHHHHHHhccCCcc--hhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc-
Confidence 466666667766544 777888888887777644 3333 236666777664433 55556788888888864310
Q ss_pred HHHHHHHcCChHHHHHhhh--------cCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh--hcCCCHHHHHHH
Q 021317 210 YRQLILKEGAIPGLLRLTV--------EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA--ARVDGADKAAET 279 (314)
Q Consensus 210 ~~~~i~~~g~v~~Lv~ll~--------~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~--~~~~~~~~~~~~ 279 (314)
.=..+ ..++|.+++-+. .....+|+.|+-+++.+++..+...++. ++..+.+.|. ...|..-..++.
T Consensus 414 lps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred chHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHH
Confidence 00001 124555554322 2357899999999999998776544444 5555555443 335766677999
Q ss_pred HHHHHHHHHHH
Q 021317 280 AKRLLQDMVQR 290 (314)
Q Consensus 280 A~~~L~~l~~~ 290 (314)
|..++..++.|
T Consensus 491 AsAAlqE~VGR 501 (1133)
T KOG1943|consen 491 ASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHhcc
Confidence 99999998876
No 204
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.27 E-value=27 Score=35.69 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhh--hcCCcHH
Q 021317 60 FQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPIL--DATAVPP 135 (314)
Q Consensus 60 ~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~ 135 (314)
+..|.....+..++...+... .+...+ .-.+...++.+. +..+.++..|+.+++.-+.. ..+. ..++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHH
Confidence 345555556666665444322 111111 112223333333 34556777777777766611 1122 2567777
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHH
Q 021317 136 LINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQL 213 (314)
Q Consensus 136 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 213 (314)
|.++....++ ++....+.+|+..+..+....... ++...|..+.++. +.++-+...+-.++-.++... .+..-
T Consensus 535 L~qlas~~s~--evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~ 609 (1005)
T KOG2274|consen 535 LLQLASKSSD--EVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGP 609 (1005)
T ss_pred HHHHcccccH--HHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--Hhhcc
Confidence 7777766544 666778888888887766665655 5778888777764 345666666777776666432 12222
Q ss_pred HHHcCChHHHHHhhhcCC----HHHHHHHHHHHHHhhcCCchhh---cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317 214 ILKEGAIPGLLRLTVEGT----FEAQERARTLLDLLRDTPQEKR---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQD 286 (314)
Q Consensus 214 i~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~l~~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~ 286 (314)
+. +-.+|.|+..+.... +....-|..+|.-+-+..+.+. .-.-+.+++..-.. .+++......|.++|+-
T Consensus 610 m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl--HsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 610 MQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL--HSDDHETLQNATECLRA 686 (1005)
T ss_pred hH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee--ecCChHHHHhHHHHHHH
Confidence 22 247999999887654 5556666777776555443322 22224444443332 23345667889999999
Q ss_pred HHHHHHHH
Q 021317 287 MVQRSMEL 294 (314)
Q Consensus 287 l~~~s~~~ 294 (314)
+...+.|.
T Consensus 687 ~Is~~~eq 694 (1005)
T KOG2274|consen 687 LISVTLEQ 694 (1005)
T ss_pred HHhcCHHH
Confidence 99655443
No 205
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.53 E-value=4 Score=31.66 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=59.9
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc---CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE---GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~---~~~~~~~~A~~~L~~l~~ 247 (314)
++..|-.-|+++++.++..|+..|-.+..++.......+.+...+..|+.++.. .++.+++.+..++...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455788888889999999999999999988765677788877788889998865 478999999998888764
No 206
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=87.44 E-value=13 Score=34.28 Aligned_cols=198 Identities=21% Similarity=0.189 Sum_probs=113.9
Q ss_pred cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC-CHHHHHHHHHHHHHhc-CCCCCchhh
Q 021317 51 IPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLS-TCKENSSPI 127 (314)
Q Consensus 51 v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~~~~i 127 (314)
|..+++=+.+. +..+|..++--|+.-..+++.+..+...|.++.+++.+.+. +......++.++..+. .+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 45666666533 45677777777777777889999999999999999999554 3324444444444444 433333333
Q ss_pred hhcCCcHHHHHHhhc--c-----CCc-------hHH----------------------------HHHHHHHHHHhc----
Q 021317 128 LDATAVPPLINLLKD--C-----KKY-------SKF----------------------------AEKATALLEILS---- 161 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~--~-----~~~-------~~~----------------------------~~~a~~~L~~L~---- 161 (314)
.+.+....++.++.- . ... .+. +..|+.++-.++
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~ 182 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR 182 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence 344455555555550 0 000 000 112223333332
Q ss_pred ----C-------ChhhhhHHHhccCCHHHHHHHhhc----C-------C-----HHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317 162 ----S-------SEEGRIAITNSDGGILTLVETVED----G-------S-----LVSTQHAVGALLSLCQSCRDKYRQLI 214 (314)
Q Consensus 162 ----~-------~~~~~~~i~~~~g~v~~Lv~ll~~----~-------~-----~~~~~~A~~~L~~L~~~~~~~~~~~i 214 (314)
. .+..|..+. +.|++..++..+.+ . . ....+.++.+|-+.+..+. +++..+
T Consensus 183 ~~~~~~~t~~~~~~~fkeelr-~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~-~nq~~l 260 (361)
T PF07814_consen 183 EAGDLSETSSRAGEWFKEELR-ELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE-ENQSYL 260 (361)
T ss_pred hcccchhhhhhccccchhhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc-cchHHH
Confidence 0 011244444 57789999988852 1 1 2245778999999887764 556666
Q ss_pred HH--cCChHHHHH-hhhcCC---HHHHHHHHHHHHHhhcCCc
Q 021317 215 LK--EGAIPGLLR-LTVEGT---FEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 215 ~~--~g~v~~Lv~-ll~~~~---~~~~~~A~~~L~~l~~~~~ 250 (314)
.. .+.++.+.. +++... ......+.+++-|++++++
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 65 333333333 333332 3445677889999998874
No 207
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.38 E-value=2 Score=43.39 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=97.1
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh--hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS 125 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~ 125 (314)
..+|.|++.....+...+..=..+|.+.-.+-. +..+. -+..+|.|++.|.-+|..++..+..+|..+..- +....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 567888888775445555444555555433322 22332 246788999999999999999999998887733 22222
Q ss_pred hhhhcCCcHHHHHHhhccCCc-hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317 126 PILDATAVPPLINLLKDCKKY-SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 199 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 199 (314)
.=++ -.+|.++.+-++.+.+ ..+++.|+.+|..|... +...-.-. ...++..|...|++....+|+.|..+=
T Consensus 946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1111 2667777666665432 46788999999999884 44333333 356777888999887788888888763
No 208
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.32 E-value=8.7 Score=37.68 Aligned_cols=165 Identities=7% Similarity=0.045 Sum_probs=96.4
Q ss_pred ccccCCHHHHHHHHHHhHhhccCchhHHHHHh----cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhc--
Q 021317 16 METYFEGYARRLNLMGPLWQLSKTRNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS-- 89 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~-- 89 (314)
++....++.+.-|+..++++..+...-..++. ...+..++..+. .++.-+..++++|.|+-.++.++..+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445567788888888844333333333332 234555555554 56777888999999998887777776643
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcCCcHHHHHHhhccC---CchHHHHHHHHHHHHhcCCh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLST--CKENSSPILDATAVPPLINLLKDCK---KYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~~L~~~~ 164 (314)
-.+.++++.=..++..++...+....|++. ..++-+ .|..+.+...+.... ++-+..-..+-+|.+|+..+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 222233332223345666655556666652 122211 445555555554322 11123345667788889888
Q ss_pred hhhhHHHhccCCHHHHHHHhhc
Q 021317 165 EGRIAITNSDGGILTLVETVED 186 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~ 186 (314)
....++. ..-.|..+..-+++
T Consensus 707 ~~~~~~A-~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLA-KNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHH-HhcCHHHHHHHHHH
Confidence 8888887 46677888777765
No 209
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.99 E-value=3.6 Score=32.41 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~ 247 (314)
++..|-+-|.++++.++..|+..|-.+..++.......+.+.+.+..|++++. ..++.+++.+..++..-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 55678888888999999999999999988876678888888999999999886 4578999999998888764
No 210
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=15 Score=38.41 Aligned_cols=214 Identities=17% Similarity=0.135 Sum_probs=132.6
Q ss_pred HHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCC----
Q 021317 29 LMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS---- 103 (314)
Q Consensus 29 ~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~---- 103 (314)
..+|. +...+++|...+.+..++..++.++-+ .+-|...++.+..|-..+..+ ++..-+-.++..|+++-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 44555 888999999999999999988888844 333444445554444332211 12233456777777641
Q ss_pred --------HHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhcc------CCchHH-------------------
Q 021317 104 --------VQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDC------KKYSKF------------------- 149 (314)
Q Consensus 104 --------~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~------------------- 149 (314)
-..+....++++... .+...+..+.+.|+...|...|-.- .+..+.
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 134555667777776 4445556666777766666555210 000000
Q ss_pred ----------------------------------------HHHHH------------HHHHHhcCC--------------
Q 021317 150 ----------------------------------------AEKAT------------ALLEILSSS-------------- 163 (314)
Q Consensus 150 ----------------------------------------~~~a~------------~~L~~L~~~-------------- 163 (314)
.+.++ ++++.+-..
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 00010 111111111
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHH
Q 021317 164 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT---VEGTFEAQERART 240 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll---~~~~~~~~~~A~~ 240 (314)
...++.+. ..|++..+++.+-...++.+..-+..|..++..++ .+.+.....|+++.|++++ .+++...-.++..
T Consensus 898 npdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRasp-fnaelltS~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 898 NPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASP-FNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred CchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCC-CchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 12255666 68889999998888888988888988988888775 5677777789999988854 3466666777888
Q ss_pred HHHHhhcCC
Q 021317 241 LLDLLRDTP 249 (314)
Q Consensus 241 ~L~~l~~~~ 249 (314)
++..|+-.+
T Consensus 976 IvemLgayr 984 (2799)
T KOG1788|consen 976 IVEMLGAYR 984 (2799)
T ss_pred HHHHHhhcc
Confidence 888877544
No 211
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=36 Score=34.15 Aligned_cols=67 Identities=18% Similarity=0.055 Sum_probs=52.3
Q ss_pred ccCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhhcCC
Q 021317 173 SDGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT-VEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 173 ~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
++++|..|+.. +.+.+++++..|..+|.-++..+++ .++..++++ .+.++.+|-.|+.+|...|.+.
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecChh----------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 35566777776 5677899999999999998888765 466677755 5568999999999999877655
No 212
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.13 E-value=4.3 Score=31.84 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=60.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~ 247 (314)
++..+..-|.++++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++....++..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 556788888889999999999999999888776788888888999999998853 468999999888877654
No 213
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.03 E-value=35 Score=37.01 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=94.4
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cCChhh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SSSEEG 166 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~ 166 (314)
+.+..++..|..+...+|..|+.+|.++...+. -...-++.|+...+ .+. ...++++|+..+.-. ..+++.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----~Ds--sasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----NDS--SASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh----ccc--hhHHHHHHHHHHhhhhhccHHH
Confidence 467888889998999999999999999985543 22333444444443 222 237889999988743 333444
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERARTLLD 243 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~---~~~~~~~~~A~~~L~ 243 (314)
..+.. ..+.+-+.+..-.+|..+..+|+.+|...|+ . .. .+....++++ ++...+++-+..++.
T Consensus 890 ~~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f-~~-----i~~~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 890 IFQYY------DQIIERILDTGVSVRKRVIKILRDICEETPD-F-SK-----IVDMCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-h-hh-----HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44433 2566666777889999999999999988764 1 11 2233334333 344558888888888
Q ss_pred HhhcCC
Q 021317 244 LLRDTP 249 (314)
Q Consensus 244 ~l~~~~ 249 (314)
.+.-.+
T Consensus 957 klWF~p 962 (1692)
T KOG1020|consen 957 KLWFTP 962 (1692)
T ss_pred HHhccC
Confidence 887555
No 214
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.96 E-value=13 Score=37.13 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=51.5
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
.+..+..+|.+.++.++..|++.|.+|+.++..-.. +...+++++...+++ .+..-.+--|..+. .....+
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdn-nvklIvldrl~~l~---~~~~~i 314 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDN-NVKLIVLDRLSELK---ALHEKI 314 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCc-chhhhhHHHHHHHh---hhhHHH
Confidence 444555555555555555555555555554422211 122233333322111 11111222222222 222333
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
. .|.+-.++++|.+.+-+++..++..-..|..+
T Consensus 315 l--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 315 L--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred H--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 3 34666777888888888888888888777654
No 215
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.92 E-value=6.4 Score=39.99 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=116.2
Q ss_pred hHHHHHhcCCcHHHHHHhcCC--------CHHHHHHHHHHHHHhccCCCChhHHhhc--------CcHHHHHHHhcc---
Q 021317 41 NKVKIATAGAIPPLVELLKFQ--------NGTLRELAAAAILTLSAAAPNKPAIAAS--------GAAPLLVQILHS--- 101 (314)
Q Consensus 41 ~~~~l~~~g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~~~~~~i~~~--------g~l~~Lv~lL~~--- 101 (314)
-...+.+.|++..++++..-+ ..+....|+.+|+-+..-++.+..+.++ .|+.-++..-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 345677888888888877432 3466778888888888777777777642 134333333221
Q ss_pred -CCHHHHHHHHHHHHHhcCCC-CCchhhhhc-C---CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 102 -GSVQGRVDAVTALHYLSTCK-ENSSPILDA-T---AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 102 -~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~-g---~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
-+++++..|+.+|.|+...+ +++..+... | +-+.. .+..+... ...+..++=.|+- ++.+.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks-~~le~~l~~mw~~----------Vr~nd 739 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKS-AKLEQVLRQMWEA----------VRGND 739 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCch-HHHHHHHHHHHHH----------HhcCc
Confidence 27899999999999998655 666554331 1 11110 11111111 2223444444432 23688
Q ss_pred CHHHHHHHhhcCC-----HHHHHHHHHHHHHhhccCcHHHHHHHHHc-----CChHHHHH--hhhc-CCHHHH--HHHHH
Q 021317 176 GILTLVETVEDGS-----LVSTQHAVGALLSLCQSCRDKYRQLILKE-----GAIPGLLR--LTVE-GTFEAQ--ERART 240 (314)
Q Consensus 176 ~v~~Lv~ll~~~~-----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~-----g~v~~Lv~--ll~~-~~~~~~--~~A~~ 240 (314)
+|..|+++|.-.. ..++..|+.+|.-|+.++ ++|+.+.+- ..++.|+. +..+ .+..++ ..|+.
T Consensus 740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~--tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~ 817 (1516)
T KOG1832|consen 740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD--TVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASA 817 (1516)
T ss_pred cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc--HHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHH
Confidence 9999999997532 578999999999999886 778877653 34444444 2222 233333 34556
Q ss_pred HHHHhhcC
Q 021317 241 LLDLLRDT 248 (314)
Q Consensus 241 ~L~~l~~~ 248 (314)
+|......
T Consensus 818 Ll~~~~g~ 825 (1516)
T KOG1832|consen 818 LLKEAQGT 825 (1516)
T ss_pred HHHHHhCC
Confidence 66665443
No 216
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=2.7 Score=40.43 Aligned_cols=66 Identities=26% Similarity=0.252 Sum_probs=48.8
Q ss_pred cCCHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhhcCC
Q 021317 174 DGGILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT-VEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 174 ~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
.|+|..++.. +.+++++++..|..+|.-+|..+++ .+...++++ .+.++.++-..+-+|...|...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----------~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----------LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc----------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4566777776 5677899999999999999887653 556666654 4567888887777887766544
No 217
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.78 E-value=23 Score=30.76 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred cCCcHHHHHHhcCC-----------CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHH--------HHH
Q 021317 48 AGAIPPLVELLKFQ-----------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ--------GRV 108 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~-----------~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~--------~~~ 108 (314)
.-.+|.|+.+|... +.....+|...|..+ .+..++|+++++++.++.- +-+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 34578888877431 112233444443333 6678999999999766531 111
Q ss_pred HHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHH
Q 021317 109 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVET 183 (314)
Q Consensus 109 ~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~l 183 (314)
....+|.+ +-.|-++.|.+++.+++.+.=++..|+++|..++.. +..|..+++ .+..++..
T Consensus 100 ~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~---~f~~ll~~ 161 (249)
T PF06685_consen 100 DLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ---YFRELLNY 161 (249)
T ss_pred HHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHH
Confidence 22222222 235678999999988766656677888999888766 556777774 56666655
No 218
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.60 E-value=8.7 Score=30.99 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=74.3
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCch
Q 021317 175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~~~ 251 (314)
..+..+..+|.+.++.-+..++..+..++..++ .+.+.+ ...+..|+.+++.. .+.+++.|+.+|..+.....+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 355678888888888888888888888886652 355545 33688888888765 467788888888888653322
Q ss_pred --hhc---chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 252 --KRL---SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 252 --~~~---~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
... ..-.+++++..+....++ ....+.+...|..+.++.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHH 145 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHC
Confidence 111 122344555554433322 466788888888888754
No 219
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.23 E-value=4.9 Score=39.64 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=91.5
Q ss_pred hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCch
Q 021317 47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSS 125 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~ 125 (314)
+..++|.|..-+++.+..+++.++..+...+..-+ ...+..-.+|.+-.+. ...+..++.+++-++..+. +
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q 458 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------Q 458 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------H
Confidence 34556666677777788899999998888877544 4445566677777763 4567889999999999888 2
Q ss_pred hhhhcCCcHHHHHHhhcc-CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHH
Q 021317 126 PILDATAVPPLINLLKDC-KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 191 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~ 191 (314)
.+-...+++.+..+++.- ..++.+.-..+.+..++.........++ ...++|.++.+...+.-..
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~-~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM-AENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee-hhhhhhhhhhhhhcccccH
Confidence 222334444444444432 2334777778888888887766643444 3668888888887765433
No 220
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.85 E-value=4.3 Score=42.21 Aligned_cols=140 Identities=21% Similarity=0.172 Sum_probs=98.1
Q ss_pred CcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCc
Q 021317 50 AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENS 124 (314)
Q Consensus 50 ~v~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~ 124 (314)
..|.+++..++ .+|+++..|.-+|+.+..-+. . .-...+|.|+..|+ +++|.+|.++.-+++.|+..-+|-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---E-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---H-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 35666666643 479999999999998643211 1 11345789999998 789999999999999998654441
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
++ -.-+.|..-|.+. ++.++..|.-+|.+|-.++..| --|-++-+..++.++++.++..|=..+-.|+.
T Consensus 996 ---ie-~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 996 ---IE-PWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ---cc-hhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 1223344555554 4488999999999988766554 46888889999999998888887755444443
No 221
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.03 E-value=3 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 120 (314)
...+.-+.++.+.+|.+++..|..|....+ ...+-..+.+..+...|+++++-+--+|+.+|..|+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 345667778888899999999999988766 33333467788888889999999999999999998854
No 222
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.61 E-value=29 Score=34.29 Aligned_cols=134 Identities=22% Similarity=0.129 Sum_probs=77.0
Q ss_pred cHHHHHHHhcc----CCHHHHHHHHHHHHHhcC----CC------CCchhhhhcCCcHHHHHHhhcc--CCchHHHHHHH
Q 021317 91 AAPLLVQILHS----GSVQGRVDAVTALHYLST----CK------ENSSPILDATAVPPLINLLKDC--KKYSKFAEKAT 154 (314)
Q Consensus 91 ~l~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~~~a~ 154 (314)
.+..+..++.+ .++.++..|+.++..|.. .. ..+........++.+...+... ..+..-...++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 44555566654 356677777777777753 21 1122233345677777777632 11223455678
Q ss_pred HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--
Q 021317 155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-- 229 (314)
Q Consensus 155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-- 229 (314)
.+|.|+.. ...++.|..++.+. +..+|..|+.+|..++...++. +.+.|..+..+
T Consensus 512 kaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---------v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 512 KALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---------VREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---------HHHHHHHHHH-TT
T ss_pred HHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---------HHHHHHHHhcCCC
Confidence 88888753 34677777777665 5788999999999887776543 34556666555
Q ss_pred CCHHHHHHHHHHHHH
Q 021317 230 GTFEAQERARTLLDL 244 (314)
Q Consensus 230 ~~~~~~~~A~~~L~~ 244 (314)
.++++|-.|..+|-.
T Consensus 572 e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 572 EDPEVRIAAYLILMR 586 (618)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHh
Confidence 357777777655533
No 223
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.48 E-value=6.7 Score=38.59 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=115.8
Q ss_pred hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 87 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 87 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
.+.+.+|.+++++...+..+|..-+.-+-+... -.-..+++..+.|.+..-+.+.++ .+++.++..+..|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~DTn~--~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLDTNA--TLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcccCCH--HHHHHHHHHHHHHHhhhch
Confidence 456789999999999988777665554444332 234456667788888888888655 7888888888777665333
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+ .. .......+-++-.+....++.+...||..++.+-.... +..-.+-+..+-+++.-+..|..+...+....
T Consensus 403 ~--~L-n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 R--NL-NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred h--hh-cHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 3 11 11122222222233456788899988888886642221 22223444555566666777888888887776
Q ss_pred cCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 247 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 247 ~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
..-....+...+++.+++... +.+...+..|-..+.-+-.
T Consensus 476 ~~~~~~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQSEVANKILPSLVPLTV---DPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccchhhhhhhcccccccccc---CcccchhhHHHHHHHHHHh
Confidence 655544555566666654444 4334456666666655553
No 224
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.29 E-value=7.8 Score=30.04 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=58.6
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC--HHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~l~~ 247 (314)
++..|-+-|+++++.++..|+..|-.+..++.......+.+..++..|..++.... +.+++.+..++..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 44567778888999999999999999998876678888888899999999887643 4488888888877654
No 225
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.94 E-value=68 Score=33.25 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHhH-hh---ccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHH
Q 021317 19 YFEGYARRLNLMGPL-WQ---LSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAP 93 (314)
Q Consensus 19 ~~~~~~~~~a~~al~-l~---~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~ 93 (314)
..++....-|+..+. ++ .+....+.. .+.-.++.+...++++..-+|.+|++++...+.-+ .+.... ..++.
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale 505 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALE 505 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHH
Confidence 345666666766655 32 233333333 24445566677778888889999999999998533 222222 34566
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhcCCCC-Cchhhhh--cCCcHHHHHHhhc
Q 021317 94 LLVQILH-SGSVQGRVDAVTALHYLSTCKE-NSSPILD--ATAVPPLINLLKD 142 (314)
Q Consensus 94 ~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~--~g~i~~Lv~lL~~ 142 (314)
...+.|. +++..++..|+-+|..+-.+.+ ....+.. .+.++.|+++.+.
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 6677777 7778899999999999986544 3343443 3455555555544
No 226
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.59 E-value=24 Score=35.85 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=119.3
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
.+..+...+|-+++.-+. ++... .....+...+++...+..|++.++-+-..|...+..|+.- ..+..+|.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 355666777888888888 55544 4444555778999999999998887777777766565432 44566777
Q ss_pred HHHH-hccC---CHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-h
Q 021317 95 LVQI-LHSG---SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-I 168 (314)
Q Consensus 95 Lv~l-L~~~---~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~ 168 (314)
+.+. .+.. .++.+...-.++.++... .+....-.+ -.+...+...+++ +...+..+++.+.+||.-.+.+ .
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhhhh
Confidence 7763 3221 122333333556555522 121111111 1233333333432 3355677888888887653321 1
Q ss_pred HHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhcCC-HHHHHHHHHHHHH
Q 021317 169 AITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGT-FEAQERARTLLDL 244 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~ 244 (314)
..+ ..++..++.+.+ +++.-+|+.|+-.+..+-.+...+.-..... -+....+..+.+.++ +..+.+|..++..
T Consensus 884 d~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 884 DFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 122 124555666555 4668888999988888765543222221111 234455556666543 4455566555443
No 227
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=62 Score=32.43 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhc--CCCCC----chhhhhcCCcHHHHHHhhccCCchHHHHHH-HHHHHHhcCChh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLS--TCKEN----SSPILDATAVPPLINLLKDCKKYSKFAEKA-TALLEILSSSEE 165 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a-~~~L~~L~~~~~ 165 (314)
|.|.+-|+-++..++.+|+..+.++- .+++. .+.+.+ .-...|.++|++..+ .++-.| .+++...+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p--~VRS~a~~gv~k~~s---- 249 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYP--MVRSTAILGVCKITS---- 249 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCc--hHHHHHHHHHHHHHH----
Confidence 34445566679999999999999987 34433 223333 245678889988755 443222 22222111
Q ss_pred hhhHHHhccCCHHHHHHHh-----hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 021317 166 GRIAITNSDGGILTLVETV-----EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART 240 (314)
Q Consensus 166 ~~~~i~~~~g~v~~Lv~ll-----~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~ 240 (314)
--..++ -...+..++.-+ .+...++|-.....|-.+..++. ..-+.+ .++|.|-..+.+.+..++-+++.
T Consensus 250 ~fWe~i-P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le-~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 250 KFWEMI-PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLE-QLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HHHHHc-CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHH-HHHHhcchhhhccchhHHHHHHH
Confidence 112222 122222222222 22345777777888877776642 233333 24667777888888999998888
Q ss_pred HHHHhhcCCc
Q 021317 241 LLDLLRDTPQ 250 (314)
Q Consensus 241 ~L~~l~~~~~ 250 (314)
.|-.+..+.-
T Consensus 325 ~ll~ik~vra 334 (1005)
T KOG1949|consen 325 MLLKIKAVRA 334 (1005)
T ss_pred HHHHHHhhhh
Confidence 8888776553
No 228
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.46 E-value=36 Score=29.14 Aligned_cols=138 Identities=21% Similarity=0.225 Sum_probs=83.5
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 52 PPLVELL-KFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 52 ~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
+.|+.-+ +..+++.+...+.+|..++.++ .+...+ +..+..+.+.++...+.-+.+.+..+-... ++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH---
Confidence 4455434 4558889999999999999887 444444 345566666666666555565555554332 2221
Q ss_pred cCCcHHHHHHh--------hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHh-hcCCHHHHHHHHHHHH
Q 021317 130 ATAVPPLINLL--------KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLVSTQHAVGALL 200 (314)
Q Consensus 130 ~g~i~~Lv~lL--------~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll-~~~~~~~~~~A~~~L~ 200 (314)
+.+..++..+ .+++...+........++.+|...+++ - ...++.+..++ +++++.++..++.+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~--g---~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH--G---VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh--H---HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3344444331 111111233333345677777765552 1 23677888888 7788889999999999
Q ss_pred Hhhc
Q 021317 201 SLCQ 204 (314)
Q Consensus 201 ~L~~ 204 (314)
.||.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9994
No 229
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.91 E-value=57 Score=31.11 Aligned_cols=255 Identities=13% Similarity=-0.001 Sum_probs=131.0
Q ss_pred cccCCHHHHHHHHHHhHhhccC-chhHHHHHhcCCcHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHH-hhcCcHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSK-TRNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAP 93 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~-~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i-~~~g~l~ 93 (314)
..+++...+..|++.|.+.... ++....... -.+..++.-| +..+.++...+..+|..+...-.+...- .=-.+.-
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 4566788899999999944443 444444333 3345555544 4457788888888887765532221111 0113344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
.+..+.++.+++.+..+......|+.. .+.+..+.+ .+...+++..+++.++ .+ ..|++...-.+.-.-.++.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p--~v-a~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP--YV-ARACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh--HH-HHHHHHHHHhcCchhHHHH
Confidence 666778888999999998888888743 345555554 3455566666666544 33 3555655555554444444
Q ss_pred HHhccCCHHHHHHHhhcCCH-HHHH-HHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 170 ITNSDGGILTLVETVEDGSL-VSTQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~-~~~~-~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
.. +.++..+ +... ..+. ..-++ -.+....++ .-... ......++...-+.+++.+...-.++-.
T Consensus 423 ~~---~~~q~~l----d~~~~~~q~Fyn~~c-~~L~~i~~d-~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 423 LY---HLFQESL----DTDMARFQAFYNQWC-IQLNHIHPD-ILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred HH---HHHhhhh----HHhHHHHHHHHHHHH-HHHhhhCHH-HHHHH-----HHhchhheecchHHHHHHHHHHHHHHHH
Confidence 43 1333221 1111 1100 00000 012222221 11111 1112223444446667666665566655
Q ss_pred CCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 021317 248 TPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 248 ~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L~~l~~ 289 (314)
+.....-.......+...+... .+.-++....|..+|..+.+
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5543333333333344444422 45457778888888877654
No 230
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=79.89 E-value=5.9 Score=39.00 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=117.8
Q ss_pred HhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 021317 46 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 124 (314)
Q Consensus 46 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 124 (314)
.+.+++|.|++++.+.+..+|. ..|.++-.. +.-...+++.-.+|.+...+.+.++.+|+.++.++..|+..=.-+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 3456889999999999988885 445554443 344566778889999999999999999999999998887421111
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
..+...+..+-.+ +. +....++.+.+-+|..++.+.... +++.-.+..+.+-+++.-...|..+..+++..+.
T Consensus 404 --~Ln~Ellr~~ar~-q~-d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 --NLNGELLRYLARL-QP-DEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred --hhcHHHHHHHHhh-Cc-cccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1111122222222 22 223356666666666666652211 1112123456667777777778888888887766
Q ss_pred cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 205 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 205 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
.-+. .+ +....++.++.+..+.+..++..|-.++..+-
T Consensus 477 ~~~~--~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 477 YFDQ--SE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccch--hh--hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 5421 11 12346778888877888888887777666553
No 231
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=79.43 E-value=65 Score=31.51 Aligned_cols=57 Identities=23% Similarity=0.125 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 120 (314)
-..+...+++.++.++...-. ...+ .-.+..|-.+|.+.....|..|+++|-.|+..
T Consensus 277 ~emV~lE~Ar~v~~~~~~nv~-~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~ 333 (898)
T COG5240 277 FEMVFLEAARAVCALSEENVG-SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK 333 (898)
T ss_pred chhhhHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 355667778888887763311 1111 12455666777888889999999999999853
No 232
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=51 Score=34.10 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=78.5
Q ss_pred cCCcHHHHHHhc------CC--CHHHHHHHHHHHHHhccC----CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHH
Q 021317 48 AGAIPPLVELLK------FQ--NGTLRELAAAAILTLSAA----APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH 115 (314)
Q Consensus 48 ~g~v~~Lv~lL~------~~--~~~~~~~a~~~L~~La~~----~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~ 115 (314)
.|.++.+++.|. .+ ++..+.-|++++++|+.. ...+.. .+.=.++.+...+.++-.-.|..||+++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 355677777775 22 455667788888888742 122222 22224455556667888889999999999
Q ss_pred Hhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHh-ccCCHHHHHHHhhcCC
Q 021317 116 YLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITN-SDGGILTLVETVEDGS 188 (314)
Q Consensus 116 nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~-~~g~v~~Lv~ll~~~~ 188 (314)
..+ .+-.+...+.+ +++...+.|..++.- .++..|+-+|..+-.+ ......+.. -.+.++.|+.+.+.-+
T Consensus 488 ~~~~~df~d~~~l~~--ale~t~~~l~~d~~l-PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSE--ALELTHNCLLNDNEL-PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHhccCCChHHHHH--HHHHHHHHhccCCcC-chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 998 33333333333 566677777754443 4444455555555444 444444431 0234455666665533
No 233
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.37 E-value=71 Score=31.31 Aligned_cols=135 Identities=18% Similarity=0.025 Sum_probs=76.6
Q ss_pred CcHHHHHHHhccC----CHHHHHHHHHHHHHhcC----CCCCchhhhhcCCcHHHHHHhhccC--CchHHHHHHHHHHHH
Q 021317 90 GAAPLLVQILHSG----SVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLLKDCK--KYSKFAEKATALLEI 159 (314)
Q Consensus 90 g~l~~Lv~lL~~~----~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~~L~~ 159 (314)
..+..+..++.++ ++.++..|+-++.+|.. +.+.+...+....++.+...|.... .+..-....+.+|.|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3456667777653 45666777766666653 2222212222336666666665421 111223456677776
Q ss_pred hcCChhhhhHHHhccCCHHHHHHHhh-c--CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHH
Q 021317 160 LSSSEEGRIAITNSDGGILTLVETVE-D--GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEA 234 (314)
Q Consensus 160 L~~~~~~~~~i~~~~g~v~~Lv~ll~-~--~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~ 234 (314)
+.. ...++.+..++. + .+..+|..|+.+|..++...+.. +-+.|+.+..+ .++++
T Consensus 473 ~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 473 AGH-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred cCC-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHH
Confidence 544 233445555554 2 34678999999999998665543 34455665544 46788
Q ss_pred HHHHHHHHHH
Q 021317 235 QERARTLLDL 244 (314)
Q Consensus 235 ~~~A~~~L~~ 244 (314)
|..|..+|-.
T Consensus 533 RiaA~~~lm~ 542 (574)
T smart00638 533 RMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHh
Confidence 8777665544
No 234
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.35 E-value=36 Score=27.98 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=83.2
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhc-CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS-GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~-g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
++.++++..+++..++..|+..+.-+.. ..++.+ ..+|.++.+..++++.++..|...+..+....+.-..-.-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567777788899999999888877632 111222 3789999999999999999999999999854332111111
Q ss_pred cCCcHHHHHHhhcc--CCchHH---HHHHHHHHHHhcC-ChhhhhHHHhccCCHHHHHHHhhcC--------CHHHHHHH
Q 021317 130 ATAVPPLINLLKDC--KKYSKF---AEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDG--------SLVSTQHA 195 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~--~~~~~~---~~~a~~~L~~L~~-~~~~~~~i~~~~g~v~~Lv~ll~~~--------~~~~~~~A 195 (314)
..++..-.+.-..- +..... ...-++-+..+.. +...|..++ ..+++.+... ...-....
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl------~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL------KSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH------HHHHHHHHhhccccccccchhHHHHH
Confidence 12333333333321 110000 2334455555544 455666665 3566666432 23334455
Q ss_pred HHHHHHhhccC
Q 021317 196 VGALLSLCQSC 206 (314)
Q Consensus 196 ~~~L~~L~~~~ 206 (314)
..+..||+.-+
T Consensus 159 ~Fla~nLA~l~ 169 (187)
T PF12830_consen 159 LFLAENLATLP 169 (187)
T ss_pred HHHHHHHhcCC
Confidence 55666666543
No 235
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=77.96 E-value=12 Score=37.05 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=93.0
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
..++|.|..-+++.+..+++.++..+..++..-+ ...++.-++|.+-.+... .....++.+++.++..+. ..-.+.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~-tt~~~vkvn~L~c~~~l~-q~lD~~ 463 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFK-TTNLYVKVNVLPCLAGLI-QRLDKA 463 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhc-ccchHHHHHHHHHHHHHH-HHHHHH
Confidence 3577777777888899999999999998886544 455666677777777433 334477788888888777 111122
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 238 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A 238 (314)
.++ .-+..+.+..+..++.+....+.+..++....++ ...+.-+.++|.++-+.....-...+.+
T Consensus 464 ~v~---d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~--g~ev~~~~VlPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 464 AVL---DELLPILKCIKTRDPAIVMGFLRIYEALALIIYS--GVEVMAENVLPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred HhH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc--ceeeehhhhhhhhhhhhhcccccHHHHH
Confidence 222 1344555555567788888888887777765543 2455567888888887766654444433
No 236
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.41 E-value=7.6 Score=30.38 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=58.2
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHH---HHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFE---AQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~---~~~~A~~~L~~l~~ 247 (314)
++..|-.-|.++++.++..|+..|-.+..++.+..+..+.+...+..|..++.+. ... +++.+..++...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4557888888899999999999999999887667788887778899999977754 333 88888888877653
No 237
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.25 E-value=5.4 Score=40.52 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=75.5
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCC---HHHHHHHHHHHHHhcC-CCCC
Q 021317 48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS---VQGRVDAVTALHYLST-CKEN 123 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~---~~~~~~a~~~L~nLs~-~~~~ 123 (314)
....|.|++.|.-+|..+|..+.+++.-+......-..-.-...+|.++.+=.+.+ ..+|..|+.+|..|.. .|.+
T Consensus 908 ~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 908 PMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 35567888888888999998888888775543222111122346777777755554 6789999999999996 6766
Q ss_pred chhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317 124 SSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157 (314)
Q Consensus 124 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 157 (314)
.-.-.+..++..|...|.+... .++..|..+=
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKR--lVR~eAv~tR 1019 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKR--LVRKEAVDTR 1019 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHH--HHHHHHHHHh
Confidence 6666667788899999987543 5666666553
No 238
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.81 E-value=14 Score=29.66 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=71.9
Q ss_pred cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 51 IPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 51 v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
++.|+++|+.+ +.++|..+.++|+.|-.-|..+-+-...+ .+.-. -.+.+...... .+.+....+ ..+...-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~---~l~~~~~~~-~~ee~y~ 84 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTDI---SLPMMGISP-SSEEYYP 84 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchhh---HHhhccCCC-chHHHHH
Confidence 45667777655 68899999999999977555443322110 00000 00000011111 111111111 1222222
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~ 203 (314)
.-++..|+..|++.+-. .....+..++.++-.. ...+.... .-.+|.++..+++.++..++.-..-|..|.
T Consensus 85 ~vvi~~L~~iL~D~sLs-~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLS-SHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34677788888775432 2223444444444322 11122222 347889999998777787777666666554
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.61 E-value=25 Score=28.29 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=64.6
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhcC-CHHHHHHHHHHHHHhhc---cC
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVEDG-SLVSTQHAVGALLSLCQ---SC 206 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~L~~---~~ 206 (314)
.+..+..+|++++. .-+..++..+..++...+ .+.+.. ..-.+..++.+|+.. +..+.+.|+.+|..|.. +.
T Consensus 26 l~~ri~~LL~s~~~--~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSA--YSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCCh--hhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45557778877654 344566666665555432 233331 122467888888764 46778888888877754 33
Q ss_pred cHHHHHHHHH---cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 207 RDKYRQLILK---EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 207 ~~~~~~~i~~---~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+ +..+++.. .+.++.++++++. +...+.+..+|..+-.+
T Consensus 103 p-~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 P-TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred C-chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 3 33334433 2344555555543 56667777777776543
No 240
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=76.58 E-value=59 Score=29.45 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=108.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcC-CC-CCchhhhhc--CCcHHHHHHhhccC---Cc--------hHHHHHHHHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLST-CK-ENSSPILDA--TAVPPLINLLKDCK---KY--------SKFAEKATAL 156 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-~~~~~i~~~--g~i~~Lv~lL~~~~---~~--------~~~~~~a~~~ 156 (314)
++.+.+.|.+..+.....++..|..++. +. .....+.+. =-.+.+-+++.... .. ..++......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999986 44 334444441 23334444442211 11 1455555555
Q ss_pred HHHhcC--ChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH-hhccC--cHHHHHHHHHcCChHHHHHhhhcCC
Q 021317 157 LEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS-LCQSC--RDKYRQLILKEGAIPGLLRLTVEGT 231 (314)
Q Consensus 157 L~~L~~--~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~-L~~~~--~~~~~~~i~~~g~v~~Lv~ll~~~~ 231 (314)
+..+.. ++..+..+..+.+.+..+.+.|..++..+....+.+|.. +..+. +...+-.+..+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 444433 356788887677889999999999899999999999875 43322 1245667777888999999887777
Q ss_pred H----HHHHHHHHHHHHhhcCC
Q 021317 232 F----EAQERARTLLDLLRDTP 249 (314)
Q Consensus 232 ~----~~~~~A~~~L~~l~~~~ 249 (314)
+ .+.+.+-..|..+|-++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 7 88888888888877554
No 241
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.53 E-value=84 Score=31.20 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=93.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhh----cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 54 LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA----SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 54 Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~----~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
.+..+.+-..+.+.-|+.+|+-+..+...-..+.. ...+..++..+. .++..+.-++++|.|+-.++.++.-+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 44555566788888899999888877544333332 235556666655 5677788899999999988877776665
Q ss_pred c--CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhcC-----CHHHHHHHHHHHH
Q 021317 130 A--TAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVEDG-----SLVSTQHAVGALL 200 (314)
Q Consensus 130 ~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~~-----~~~~~~~A~~~L~ 200 (314)
. -.+.++... ++.+ +..+..+..+...|++.. .++- +.|..+.+...+... +-+..-..+.+|.
T Consensus 628 ~~~~i~~~~~~~-~s~~-~knl~ia~atlaln~sv~l~~~~~-----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 628 RLESILDPVIEA-SSLS-NKNLQIALATLALNYSVLLIQDNE-----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred HHHHHhhhhhhh-hccc-chhHHHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 3 222222222 2222 113333322333344322 2211 234555555555431 2223445677888
Q ss_pred HhhccCcHHHHHHHHHcCChHHHHHhhhc
Q 021317 201 SLCQSCRDKYRQLILKEGAIPGLLRLTVE 229 (314)
Q Consensus 201 ~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~ 229 (314)
+|+..++ ....+...-.+..+..-+++
T Consensus 701 tL~t~~~--~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 701 TLMTVDA--SVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred hhccccH--HHHHHHHhcCHHHHHHHHHH
Confidence 8887753 35555554457777765554
No 242
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.99 E-value=5.8 Score=31.29 Aligned_cols=72 Identities=6% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCC
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~ 120 (314)
.++..|..-|.+.++.++..|+..|-.+..+- .....|.+...+..|++++.. .++.++...+..|...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 34567888888999999999999999998864 356677888999999999988 6899999999999888743
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.75 E-value=13 Score=26.84 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=51.4
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH
Q 021317 135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 208 (314)
Q Consensus 135 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~ 208 (314)
..+..+.++. ..++..++..|..|....+ .....-.+.+..+...|++.++=+--+|..+|..|+...++
T Consensus 7 ~al~~L~dp~--~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPL--PPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCC--cchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455555543 3788899999999988766 22222345777888888888888889999999999987754
No 244
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.42 E-value=59 Score=28.44 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhcc--CCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHS--GSVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
+.|=+.|.++++.+|..|+..|...-. -+... ....-+..|++..-+ .|......++.++..|.....-
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~----- 73 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF----- 73 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----
Confidence 345567888999999999988888544 23211 112223444544433 3555555556666666633221
Q ss_pred hcCCcHHHHHHhhc----cCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 021317 129 DATAVPPLINLLKD----CKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSL 202 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~----~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L 202 (314)
..+....+++.+.. ..-....+..+..++..+..+. +.-..+. .+.+..+++.+.. .+|.-.-.+...+..+
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 11112222222221 1111234455666666665442 2222222 3456677777754 3454444444444444
No 245
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.72 E-value=33 Score=25.13 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=51.9
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 243 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~ 243 (314)
..+.+..|++.+...+....+.++..|..+..++ ...+.+.+-|+++-|-++-...++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3445667777777777668899999999999886 34777888898888777777777777766655554
No 246
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.63 E-value=8.5 Score=30.17 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=57.7
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHHHHHhcc------CCHHHHHHHHHHHHHhcC
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQILHS------GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 119 (314)
++..+..-|.++++.++..|+..|-.+..+ +.....|.+.+.+..|++++.. .++.++...+..|..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999998886 3456778888999999999963 468899999988887763
No 247
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.54 E-value=82 Score=35.45 Aligned_cols=265 Identities=11% Similarity=0.042 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHH---HHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKV---KIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~---~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
.+..+...|+..|. ++.+.-+... .=.+...+.++..++. +.+.++++..+.++.+|..... ..| .. |=+.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWkt 1224 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKS 1224 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHH
Confidence 45678888888876 4443332211 1123456677777775 4578999999999998765322 112 12 3333
Q ss_pred HHHHh----ccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHh----hccCCchHHHHHHHHHHHHhcCCh
Q 021317 95 LVQIL----HSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLL----KDCKKYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 95 Lv~lL----~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~~L~~~~ 164 (314)
+..++ .+.++.+...|..++..+..+.- ..+.. .+....++..+ .... ..++.-.|+..|++++..-
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHHHHHHHHHH
Confidence 34443 35577788888888776653311 11111 23333344444 3221 2356667777787652210
Q ss_pred -hh------h------------------h---HHHh----ccCCHHHHHHH---hhcCCHHHHHHHHHHHHHhhccCcHH
Q 021317 165 -EG------R------------------I---AITN----SDGGILTLVET---VEDGSLVSTQHAVGALLSLCQSCRDK 209 (314)
Q Consensus 165 -~~------~------------------~---~i~~----~~g~v~~Lv~l---l~~~~~~~~~~A~~~L~~L~~~~~~~ 209 (314)
+. + . .+.. ....+|.|..+ ..+...++|..|+.+|..+-......
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00 0 0 0000 01234444433 44567889999999987764332222
Q ss_pred HHHHHHH---cCChHHHHHhhhcC-----------------------CHHHHHHHHHHHHHhhcCCch--hhcchhhhHH
Q 021317 210 YRQLILK---EGAIPGLLRLTVEG-----------------------TFEAQERARTLLDLLRDTPQE--KRLSSSVLEK 261 (314)
Q Consensus 210 ~~~~i~~---~g~v~~Lv~ll~~~-----------------------~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~ 261 (314)
.....++ .+++-++...++.. +....+-+.-+|..+..-=.. ..+ .+.++.
T Consensus 1382 Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L-~~~L~~ 1460 (1780)
T PLN03076 1382 FSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV-NPLLKK 1460 (1780)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2333332 24555565544321 011234444455555432111 111 224444
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHH
Q 021317 262 IVYDIAARV-DGADKAAETAKRLLQDMVQRSM 292 (314)
Q Consensus 262 lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~s~ 292 (314)
++..|.... ..++...+-...+|.+|...+.
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 444443222 2245667888888888886653
No 248
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=29 Score=33.77 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=71.4
Q ss_pred cCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317 89 SGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 167 (314)
Q Consensus 89 ~g~l~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 167 (314)
.|++..++.. .++++..+|..|..+|.-++..+. ..++..+++|.... +..++....-+|.--|.+...+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~sh-N~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESH-NFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhcc-chhhhhhhHHHhhhhhcCCccH
Confidence 3455666665 566788899999888888876543 36777788887753 3355443333444333332222
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE 229 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~ 229 (314)
-++..|-.++.+..+-+|..|+.++..+.....++.-..+ .+.++.+.+++.+
T Consensus 621 -------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 621 -------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred -------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence 1334556666777778888888888777543322211111 2344555555544
No 249
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.54 E-value=11 Score=29.06 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=58.1
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc---CCHHHHHHHHHHHHHhcCC
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS---GSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~---~~~~~~~~a~~~L~nLs~~ 120 (314)
++..|..-|+++++.++..|+..|-.+..+- .....+.....+..|+.++.. .++.++..++..|.+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999998874 346667777888889999975 4789999999999888744
No 250
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=72.39 E-value=49 Score=26.53 Aligned_cols=144 Identities=17% Similarity=0.110 Sum_probs=75.0
Q ss_pred CcHHHHHHHhccC-CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 90 GAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 90 g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
..++.|.++|+.. +..+|..++.+|+.|-.-|+.+-.....+.- .-. -..... .... ..+.+....+ .-.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~--~~~~---~~l~~~~~~~-~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSND--ESTD---ISLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccc--cchh---hHHhhccCCC-chH
Confidence 3456777888765 6899999999999997655544442221100 000 000000 1111 1121111111 122
Q ss_pred HHHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 169 AITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
... -..++..|++.|++.+ ..-...++.++.++...........+ ...+|.+++.+++.++..++.-..-|..|
T Consensus 81 e~y-~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYY-PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222 2346778899888765 22334556666665533211222222 34788999999887777776655444443
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.03 E-value=23 Score=34.58 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
|.+..+++.+.+++..+|..++..|..+...-.--....-.|.+..|.+-+.+..+.+|..|..+|..+-....|-+..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~- 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR- 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH-
Confidence 5566667777788888999888888888764333333445677888888888889999999999998876444333222
Q ss_pred hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
....|+.+++.+ +...++.. ++.|+..++..
T Consensus 170 ---~~n~l~~~vqnD-PS~EVRr~---allni~vdnsT 200 (885)
T COG5218 170 ---IVNLLKDIVQND-PSDEVRRL---ALLNISVDNST 200 (885)
T ss_pred ---HHHHHHHHHhcC-cHHHHHHH---HHHHeeeCCCc
Confidence 223566677663 33466554 34466655433
No 252
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.55 E-value=17 Score=27.73 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=48.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhc-----C---CHHHHHHHHHHHHHh
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVE-----G---TFEAQERARTLLDLL 245 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~-----~---~~~~~~~A~~~L~~l 245 (314)
++..|.+-|.+.++.++..++.+|..+|...++..+..+.+ ...|..+.++-.. | ...++..|-.++..+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 44578888888889999999999999998877677777765 4455555554331 1 235566665555554
No 253
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.31 E-value=56 Score=35.55 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=66.1
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPI 127 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i 127 (314)
+.+..++.+|..+...+|..|+.+|.++..-|.. .+....+-..+..-+.+.+..+|+.|+..++... ..++.-...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3456778888888899999999999999875431 1122333344455567788889999999887554 333221111
Q ss_pred hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
.+ .+.+-+.+. ...++..+..++..+|...+.
T Consensus 894 Y~-----~i~erIlDt--gvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 894 YD-----QIIERILDT--GVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HH-----HHHhhcCCC--chhHHHHHHHHHHHHHHhCCC
Confidence 11 111112222 225677777777777765444
No 254
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.81 E-value=46 Score=29.37 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=46.5
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch--hhhhcCCcHHHHHHhhc----------cCCchHHHHHHHHH
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS--PILDATAVPPLINLLKD----------CKKYSKFAEKATAL 156 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~--~i~~~g~i~~Lv~lL~~----------~~~~~~~~~~a~~~ 156 (314)
.-.+|+++.++++.++..|..++.+|..+...-.... .+.+.|..+.+-+.+.. ..+...+...+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3579999999999999999999999999986543222 24456655544443321 01122455556666
Q ss_pred HHHh
Q 021317 157 LEIL 160 (314)
Q Consensus 157 L~~L 160 (314)
+..|
T Consensus 198 L~~L 201 (282)
T PF10521_consen 198 LLSL 201 (282)
T ss_pred HHHH
Confidence 6555
No 255
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.76 E-value=42 Score=33.52 Aligned_cols=127 Identities=12% Similarity=0.084 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--c----CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 177 ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--E----GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 177 v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~----g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
...++.+|.+.+-..|..-+.+.+|+..+-.. ...+++ . ..+..|.+=+.+..|-++..|...+..+++-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~--d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKK--DGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhc--chhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 35678888888888888888888888754211 122333 1 234444444566789999999998888877553
Q ss_pred h-hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHhhhcCC
Q 021317 251 E-KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMT------RIQQRAASSAP 308 (314)
Q Consensus 251 ~-~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~------~~~~~~~~~~~ 308 (314)
. .-....+.+-++..+. |.+.-+++.|..++..|.-++|=..+. .+|.+...+++
T Consensus 379 k~~~~r~ev~~lv~r~lq---Drss~VRrnaikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E 440 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQ---DRSSVVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAE 440 (1128)
T ss_pred cccchHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhcCChhhhccchhhhHHHHhhcchhH
Confidence 2 2223445554444444 777889999999998877555444433 45555444433
No 256
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=70.58 E-value=52 Score=27.07 Aligned_cols=108 Identities=18% Similarity=0.090 Sum_probs=66.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh----------------------cCCcHHHHHHhhccCCchHHHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD----------------------ATAVPPLINLLKDCKKYSKFAE 151 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~----------------------~g~i~~Lv~lL~~~~~~~~~~~ 151 (314)
.+--++.|+++.+|..|+.+|..|-... +..+.. ...-..|+..|+.... .....
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~-~~~l~ 120 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS-PPVLT 120 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-cHHHH
Confidence 3344467889999999999999887542 111110 1122345556665433 24556
Q ss_pred HHHHHHHHhcCChh-hh--hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 152 KATALLEILSSSEE-GR--IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 152 ~a~~~L~~L~~~~~-~~--~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
..+.++..|..+.. +| ..+. ...+..+-.++.+.+.+++..++.++..+....
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 67777777766632 22 2222 234555566667788889999999998887543
No 257
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=1.3e+02 Score=30.40 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=73.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHH-hhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINL-LKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
+-+++.+.+|-.|......+..--... .+.++|..|+.. .++.++ +++..|..+|.-++.. +
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nD--DVrRaAVialGFVl~~---------d 586 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVND--DVRRAAVIALGFVLFR---------D 586 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccch--HHHHHHHHHheeeEec---------C
Confidence 334455556666655544432211110 123466666666 334333 6777777776654432 2
Q ss_pred cCCHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 174 DGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 174 ~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
...++..+.+|. +-++-+|--++.+|.--|.+... ++.+ ..|=.+..+...-+|+.|+-++..+.
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--~eAi------~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--KEAI------NLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--HHHH------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 233456667775 45789999999999988887643 4333 23333555667888998887777654
No 258
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.59 E-value=47 Score=29.08 Aligned_cols=145 Identities=15% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHH
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT 171 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~ 171 (314)
+.|-..|.+.++..|..|+..|..+... +... ....-+..|++...+.-.+......++..+..|...........
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3455678889999999999998887633 3221 22223455555554432222334445555655554332211111
Q ss_pred hccCCHHHHHHHhh--cCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhc-CCHHHHHHHHHHHHHhh
Q 021317 172 NSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE-GTFEAQERARTLLDLLR 246 (314)
Q Consensus 172 ~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~ 246 (314)
...+..+..... +-....|..+...|..+.... +..+.+ .+.+..+++.+.+ .||+--..+..++..+.
T Consensus 79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~----~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH----REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh----HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 112333333222 223567888888888887553 333333 3467777777765 47888777777666664
No 259
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.13 E-value=9.7 Score=29.51 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=57.8
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
.++..|-+-|.++++.++..|+.+|-.+..+- .-...+...+.+..|..++......+.++..++.++...+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999998653 345566778899999999988655444888888888776654
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.77 E-value=11 Score=29.60 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=58.9
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCC
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~ 120 (314)
.++..|..-|.++++.++..|+..|-.+..+- .....+.+.+.+..|+.++. ..++.++..++..+.+-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 44667888889999999999999998888863 35667778899999999987 45789999999999888743
No 261
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.60 E-value=99 Score=28.56 Aligned_cols=136 Identities=16% Similarity=0.120 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhc--C-CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHH
Q 021317 103 SVQGRVDAVTALHYLSTCKENSSPILDA--T-AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT 179 (314)
Q Consensus 103 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~ 179 (314)
+.++..+|+.+|..+..+++.-..+-+. . .+...+..+.+++....+ +...++.|+...-... ++ ....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i---~~~~l~~ls~Q~f~~~-~~-~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSI---CTHYLWCLSDQKFSPK-IM-TSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCCCc-cc-chhhHHH
Confidence 5678899999999998877655555542 1 455666677666554344 4444555454432222 22 3445555
Q ss_pred HHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHH-c-CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 180 LVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILK-E-GAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 180 Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~-g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
++..+.. ++..+....+.++.+|....+ +.|.+ . -.++.++..+-+....++..|..++..+..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p----~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFP----QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 6655532 457788889999999986653 34444 3 378888887777778888888777666653
No 262
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.47 E-value=95 Score=30.55 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=59.4
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
..++ .|.+..+++-+.+.+.++|..++.+|+-+...-.+ -....-.|.+..|.+=+-+..+.++..|+.+|+.+-.
T Consensus 86 ~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 5565 46788888888888899999999999998855432 2344556777788876667889999999999988865
Q ss_pred CC
Q 021317 248 TP 249 (314)
Q Consensus 248 ~~ 249 (314)
..
T Consensus 162 ~~ 163 (885)
T COG5218 162 ME 163 (885)
T ss_pred cc
Confidence 43
No 263
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=67.21 E-value=7.1 Score=29.05 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHH
Q 021317 25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRE 67 (314)
Q Consensus 25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~ 67 (314)
.-..+..+..++..|+--..+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3445566675667788888899999999999999999877643
No 264
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.89 E-value=20 Score=27.60 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-C--------Cch-h----hhh-
Q 021317 65 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-E--------NSS-P----ILD- 129 (314)
Q Consensus 65 ~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~--------~~~-~----i~~- 129 (314)
++.+.+.++..++..+-- -.....++.+++++.+ ++......+.+|..+...- + .|. . +.+
T Consensus 4 i~~kl~~~l~~i~~~~~P---~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWP---QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCh---hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 455666777777653210 0245678888888877 4666667777777765311 0 111 1 111
Q ss_pred -cCCcHHHHHHhhccCCc--hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317 130 -ATAVPPLINLLKDCKKY--SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 199 (314)
Q Consensus 130 -~g~i~~Lv~lL~~~~~~--~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 199 (314)
..++..+.+.+...... ..+...++.++......-+.. .+. +...++.+.+++.+ +..++.|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-~i~-~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-LII-NSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-HHH-SSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-Hhc-cHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 23444455555554321 477788889988877744433 344 46789999999944 44577888775
No 265
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=66.69 E-value=56 Score=28.87 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChh--HHhhcCcHHH----HHHHhc--------cCCHHHHHHHHHHH
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPL----LVQILH--------SGSVQGRVDAVTAL 114 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--~i~~~g~l~~----Lv~lL~--------~~~~~~~~~a~~~L 114 (314)
-++|+++.++++.++.++..++.+|..+..+-.... .+.+.|..+. +...|. +.+..+...+.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 458999999999999999999999999877533222 2445554443 333333 33456667777777
Q ss_pred HHhc
Q 021317 115 HYLS 118 (314)
Q Consensus 115 ~nLs 118 (314)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 266
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.24 E-value=44 Score=24.84 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=51.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh------hcCCHHHHHHHHHHHHHh
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT------VEGTFEAQERARTLLDLL 245 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll------~~~~~~~~~~A~~~L~~l 245 (314)
++..|-.-|.+.++.++-.|+..|-.+..+..+.....+.+......++++. ...+..+|+.+..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 5557777778888999999999999999888777777777766666565431 112578888887776654
No 267
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=65.73 E-value=4.4 Score=21.79 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc
Q 021317 65 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS 101 (314)
Q Consensus 65 ~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~ 101 (314)
+|..|+.+|+++ .+..++++|++.|++
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhcC
Confidence 466777777777 446678888887753
No 268
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.51 E-value=1.8e+02 Score=29.66 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=109.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch--------hhh
Q 021317 57 LLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS--------PIL 128 (314)
Q Consensus 57 lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~--------~i~ 128 (314)
+|++....+...|++++.+|..... ..... ++..|-.+|.++...+|..|..+|..++.....+. .++
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~---r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lI 328 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNS---RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLI 328 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCH---hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhh
Confidence 4455567777788888888865311 11111 66777777888999999999999999985432221 111
Q ss_pred -hcC---CcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHh------------ccCCHHHHHHHhhc-CCH
Q 021317 129 -DAT---AVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITN------------SDGGILTLVETVED-GSL 189 (314)
Q Consensus 129 -~~g---~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~------------~~g~v~~Lv~ll~~-~~~ 189 (314)
+.+ +..++..+|+.|.+. -.+.-+.-+.+...+ ++.+..+++ ..+.+..|.++|++ |.-
T Consensus 329 td~NrsIat~AITtLLKTG~e~--sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 329 TDSNRSIATLAITTLLKTGTES--SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred cccccchhHHHHHHHHHhcchh--HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 111 345566667666542 122222222222221 111111110 12233445555543 334
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc
Q 021317 190 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR 269 (314)
Q Consensus 190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~ 269 (314)
+-+.....++..+...++ +.++ -++..|+.++.+. +-..-+..+|..|....+..-.....+..+-..+.
T Consensus 407 e~K~aivd~Ii~iie~~p-dsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi-- 476 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENP-DSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI-- 476 (865)
T ss_pred hHHHHHHHHHHHHHHhCc-chhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh--
Confidence 445555555555554443 2221 2466677776544 33455677888877544321111112222211111
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 021317 270 VDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 270 ~~~~~~~~~~A~~~L~~l~ 288 (314)
-.+...+..|..+|.++.
T Consensus 477 -LEn~ivRaaAv~alaKfg 494 (865)
T KOG1078|consen 477 -LENAIVRAAAVSALAKFG 494 (865)
T ss_pred -hhhhhhHHHHHHHHHHHh
Confidence 113566777777777776
No 269
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.17 E-value=88 Score=28.30 Aligned_cols=197 Identities=15% Similarity=0.051 Sum_probs=99.1
Q ss_pred cCCcHHHHHHhcC-CCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCch
Q 021317 48 AGAIPPLVELLKF-QNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS 125 (314)
Q Consensus 48 ~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~ 125 (314)
.-++..|..++.. .++......+.++.. +... ..-.....+..+.+-+.+..+.+|..-+..++.......+..
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3445667777754 467777777776665 3222 011223455667777777777788888888887776222322
Q ss_pred hhhh-cCCcHHHHHHhhccCCc--hH----HHHHHHHHHHHhcCC--hhhhh-HHHh---ccCCHHHHH---HHhhc-CC
Q 021317 126 PILD-ATAVPPLINLLKDCKKY--SK----FAEKATALLEILSSS--EEGRI-AITN---SDGGILTLV---ETVED-GS 188 (314)
Q Consensus 126 ~i~~-~g~i~~Lv~lL~~~~~~--~~----~~~~a~~~L~~L~~~--~~~~~-~i~~---~~g~v~~Lv---~ll~~-~~ 188 (314)
..-- ...++.|++.++..... +. ....+..++. +... +.... .... ..+-=|.++ ++... .+
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 2222 34778888888542111 01 1112222222 1110 00000 0000 000001110 22222 34
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCc
Q 021317 189 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~ 250 (314)
++-..+.+.+|..+..+......... ....-+.++.++-+. ...+|+.|..++..+....+
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 44556677777766654332222222 233566777777776 78899999888887765443
No 270
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=62.05 E-value=1.1e+02 Score=31.12 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=86.7
Q ss_pred HHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH--HHHHHhhc-CC
Q 021317 113 ALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL--TLVETVED-GS 188 (314)
Q Consensus 113 ~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~--~Lv~ll~~-~~ 188 (314)
+|+++. ..++++..+.+.|++..+.+.++.- +...+...+++.+.|++...+.+....- --.+. .+-.++.. .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcch
Confidence 677888 6678999999999999999999976 4457888999999999887655433321 11121 33333333 33
Q ss_pred HHHHHHHHHHHHHhhccCc--------HHHHHHHHHc--------------CChHH-HHHhhhc-CCHHHHHHHHHHHHH
Q 021317 189 LVSTQHAVGALLSLCQSCR--------DKYRQLILKE--------------GAIPG-LLRLTVE-GTFEAQERARTLLDL 244 (314)
Q Consensus 189 ~~~~~~A~~~L~~L~~~~~--------~~~~~~i~~~--------------g~v~~-Lv~ll~~-~~~~~~~~A~~~L~~ 244 (314)
.+.-..|+++|+.+..+.+ +...+.+++. ..+.+ +.++++. ..+..+.-|.+++.+
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~ 651 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN 651 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence 3666788888888876521 1222233321 12222 4444443 356677778888888
Q ss_pred hhcCCc
Q 021317 245 LRDTPQ 250 (314)
Q Consensus 245 l~~~~~ 250 (314)
+.....
T Consensus 652 ~~~~~~ 657 (699)
T KOG3665|consen 652 VLEQNK 657 (699)
T ss_pred HHHcCh
Confidence 876554
No 271
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.63 E-value=18 Score=35.81 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=58.6
Q ss_pred cCCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC---CHHHHHHHHHHHHHhcCC
Q 021317 48 AGAIPPLVELLK----FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 48 ~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~ 120 (314)
.-.++.|...+. .++.+-+..++.+|+|+ .....++.+...+.+. +..+|..|+++|+.++..
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----------g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----------GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----------CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 345666776664 34567778889999998 3356778888887766 678899999998877533
Q ss_pred CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH
Q 021317 121 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 157 (314)
Q Consensus 121 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 157 (314)
.. ..+.+.++.+..+.....+++..|..+|
T Consensus 555 ~~-------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 555 CP-------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -H-------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 21 1244566777776555556665554444
No 272
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=61.06 E-value=12 Score=28.26 Aligned_cols=41 Identities=22% Similarity=0.072 Sum_probs=34.5
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
.=+++.|++.|.++++++...|..+|...+.++.....++.
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 34789999999999999999999999999987766555554
No 273
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=60.73 E-value=1.1e+02 Score=26.22 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=74.0
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
.-+..+++.+...+.+|. ++.++..+... ++..|..+.+.++.+.+.-+.+.+..+-..++ +. + +.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f--~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F--PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H--HHHHH
Confidence 345678899999999999 55544133222 23456666666666654445555555543221 11 1 34444
Q ss_pred HHHH--hc------c--CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh-hccCCchHHHHHHHHHHHHhc
Q 021317 95 LVQI--LH------S--GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-KDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 95 Lv~l--L~------~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~~L~~L~ 161 (314)
++.. ++ + ...+.....+..++.++...++ -....++.+..++ ++++ +..+..++..|..|+
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~--~~~~alale~l~~Lc 150 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCD--EVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHH
Confidence 4444 11 1 1234455556788888855444 2234677788888 4433 356677788888888
No 274
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.02 E-value=9.7 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHH
Q 021317 66 RELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQG 106 (314)
Q Consensus 66 ~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~ 106 (314)
.......+..||..++....+++.|+++.|+.+|.+.+..+
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 44567888899999999999999999999999999887654
No 275
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=59.57 E-value=37 Score=22.18 Aligned_cols=49 Identities=31% Similarity=0.404 Sum_probs=35.9
Q ss_pred HHHhhccCcHHHHHHHHHcCChHHHHHh-hhcCCHHHHHHHHHHHHHhhcCC
Q 021317 199 LLSLCQSCRDKYRQLILKEGAIPGLLRL-TVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 199 L~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
|.-||... ..|+.+++.|+.+.|-.+ ....++.+++.+-.+...|-...
T Consensus 2 LllL~~T~--~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCATR--EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhccH--HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 45567654 669999999977777663 44467999988888888876544
No 276
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=59.33 E-value=1.6e+02 Score=27.70 Aligned_cols=135 Identities=14% Similarity=0.078 Sum_probs=83.7
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh---cc-----CCchHHHHHHHHHHHHhcCC
Q 021317 93 PLLVQILHSGS-VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DC-----KKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 93 ~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~---~~-----~~~~~~~~~a~~~L~~L~~~ 163 (314)
..+...|.++. +..+..++.+++-|+.+.+.-..+....-++.|+.+-. .. ..+..+...++.+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 45677777775 56677888888888887766555554434444444332 11 11236677899999999887
Q ss_pred hh-hhhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHH-HHcCChHHHHHhhhc
Q 021317 164 EE-GRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLI-LKEGAIPGLLRLTVE 229 (314)
Q Consensus 164 ~~-~~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i-~~~g~v~~Lv~ll~~ 229 (314)
.. .+.... +......+++.+.. -...+.-.=++.|.-++.-.. +.|.++ .+.+|++-+.+.+.+
T Consensus 128 Sq~~q~~~~-~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~-~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFL-ENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET-DHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHH-hhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH-HHHHHHHHHhcccHHHHHHhhc
Confidence 54 455555 56666666665532 123344445566666666554 456555 458888888887764
No 277
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.66 E-value=85 Score=24.55 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=55.0
Q ss_pred CHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVE---GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~-Lv~ll~~---~~~~~~~~A~~~L~~l~~ 247 (314)
++..|-+-|.. .++.++..|+..|-.+..++.......+.....+.. |++++.. .+..++.....++...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34456666653 478888889999999888877678888888889987 8998863 235888888888888764
No 278
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=57.24 E-value=29 Score=29.02 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=44.1
Q ss_pred hhhcCCcHHHHHHhhccCCc----------------hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCH
Q 021317 127 ILDATAVPPLINLLKDCKKY----------------SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSL 189 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~----------------~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~ 189 (314)
+.+.|++..++++|+.+... .++...|...|..++.+ .+|+..+.. .++.++..+.....
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~---~~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK---HLDFLISIFMQLQI 115 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HHH-----HHCCCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH---HHhHHHHHHHHhhc
Confidence 44567777777777653221 35677888999999877 567777764 34444444443222
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 190 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 190 ~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
..--.+..+|..+-.+++ +....+.+.. +..++.+++..... ..-...|..++....
T Consensus 116 ~~~~~~~d~l~~i~~dN~-~L~~~i~e~~-I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 116 GYGLGALDVLTEIFRDNP-ELCESISEEH-IEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp -TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred cCCchHHHHHHHHHHCcH-HHHHHhhHHH-HHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 222346677777777764 5566665544 88899888763321 123356666665443
No 279
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=57.10 E-value=55 Score=30.54 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=100.6
Q ss_pred CchhHHHHHhcCCcHHHHHHhcCCC-HHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc--c--------CCHHH
Q 021317 38 KTRNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH--S--------GSVQG 106 (314)
Q Consensus 38 ~~~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~--~--------~~~~~ 106 (314)
+.++|..+. ..++++|.++. +..+...+.++.-|+.+..+-..+...--+..|+.+-+ . ++..+
T Consensus 39 ~~d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~v 113 (532)
T KOG4464|consen 39 NSDDRKELG-----ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHV 113 (532)
T ss_pred chhhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHH
Confidence 334455554 35778887765 55666778888888887655444443333444444421 1 24578
Q ss_pred HHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCC---chHHHHHHHHHHHHhcC-ChhhhhHHHhccCCHHHHH
Q 021317 107 RVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKK---YSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLV 181 (314)
Q Consensus 107 ~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~v~~Lv 181 (314)
...+..+|+|+.. ++..+....+......+++.+..... .-++...-++.|.-|.. ..+.|.++..+.++++-+-
T Consensus 114 i~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt 193 (532)
T KOG4464|consen 114 IMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLT 193 (532)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHH
Confidence 8999999999995 45566677776666666665543211 01222334455544433 3577888877889999999
Q ss_pred HHhhcC---------C------HHHHHHHHHHHHHhhccC
Q 021317 182 ETVEDG---------S------LVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 182 ~ll~~~---------~------~~~~~~A~~~L~~L~~~~ 206 (314)
..+.+. + .+....++.++.|++.+.
T Consensus 194 ~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 194 NWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 888541 1 134456777788887654
No 280
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.97 E-value=55 Score=29.88 Aligned_cols=110 Identities=18% Similarity=0.037 Sum_probs=63.7
Q ss_pred cHHHHHHhcCC-------CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc----------CCHHHHHHHHHH
Q 021317 51 IPPLVELLKFQ-------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS----------GSVQGRVDAVTA 113 (314)
Q Consensus 51 v~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~----------~~~~~~~~a~~~ 113 (314)
+|.++.++... +-........++..|..++...-...=.-.+|.++.++-. .+..+|..|+..
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 56666666332 3445556677777777776654444434488888887732 234789999999
Q ss_pred HHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 114 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 114 L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
|..++..-.+...-+...++..+.+.+.+........-.|+..|..|
T Consensus 292 l~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99998544433333444445556666655432222233444444444
No 281
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.89 E-value=68 Score=32.18 Aligned_cols=153 Identities=15% Similarity=0.037 Sum_probs=88.8
Q ss_pred CcHHHHHHHhccC--CHHHHHHHHHHHHHhcCCC-CCch--h----hhh-----cCC----cHHHHHHhhccCCchHHHH
Q 021317 90 GAAPLLVQILHSG--SVQGRVDAVTALHYLSTCK-ENSS--P----ILD-----ATA----VPPLINLLKDCKKYSKFAE 151 (314)
Q Consensus 90 g~l~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~-~~~~--~----i~~-----~g~----i~~Lv~lL~~~~~~~~~~~ 151 (314)
|.+..++..+.+. .+...+.-...|.+++.+. +... . +.+ .|. ...++++|.+.+- .++-
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~--tlRc 317 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESF--TLRC 317 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccch--hHHH
Confidence 3444445554442 4455666677788887543 2211 1 111 232 3456677766433 4555
Q ss_pred HHHHHHHHhcCChhhhhHHHhc-----cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH--HHHHHHHHcCChHHHH
Q 021317 152 KATALLEILSSSEEGRIAITNS-----DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD--KYRQLILKEGAIPGLL 224 (314)
Q Consensus 152 ~a~~~L~~L~~~~~~~~~i~~~-----~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~--~~~~~i~~~g~v~~Lv 224 (314)
..+.++.|+..+.....+++.+ +..+..+++-+.+.++-+|..|+..+..++.-+.. .-|.. ++...+
T Consensus 318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~ 392 (1128)
T COG5098 318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVG 392 (1128)
T ss_pred HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHH
Confidence 5566677776654333334310 12344555556677889999999999888865421 22333 344455
Q ss_pred HhhhcCCHHHHHHHHHHHHHhh-cCC
Q 021317 225 RLTVEGTFEAQERARTLLDLLR-DTP 249 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l~-~~~ 249 (314)
+-+++.+..++++|+.++..|- .||
T Consensus 393 r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 393 RRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 6677889999999999887764 555
No 282
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=55.78 E-value=1.7e+02 Score=27.00 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=98.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhc--------cCC-chHHHHHHHHHHHHhcCChhhhhH
Q 021317 100 HSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKD--------CKK-YSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 100 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~--------~~~-~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
...+...|..|...|.+.-...++...... ..-++.+++.++. +++ +.++...|+.++..+-.+++.-..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 445556677787777776644433322211 2234444444432 122 347778899999888877766555
Q ss_pred HHhccC--CHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-----CCHHHHHHHHH
Q 021317 170 ITNSDG--GILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-----GTFEAQERART 240 (314)
Q Consensus 170 i~~~~g--~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-----~~~~~~~~A~~ 240 (314)
+-.+.+ .+...+..+.+.+ ..+....+++ |+..+- ...++....+..++..+.+ ++..+......
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~---ls~Q~f---~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWC---LSDQKF---SPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHcCCC---CCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 542222 3456666665433 3444444444 443211 1223344445555554332 45677777788
Q ss_pred HHHHhhcCCchhhcchh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 241 LLDLLRDTPQEKRLSSS--VLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 241 ~L~~l~~~~~~~~~~~~--~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
++.+|....++.+.... -.+.++..+. +...+.+.+|..++..+.
T Consensus 157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~---~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHADIWFPILFPDLL---SSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHH
Confidence 88888766655454432 4566766666 333566666777766665
No 283
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=55.42 E-value=1.3e+02 Score=25.64 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC-------------CHH-----HHHHHHHHHHHhcCCCCCc
Q 021317 63 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-------------SVQ-----GRVDAVTALHYLSTCKENS 124 (314)
Q Consensus 63 ~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~-------------~~~-----~~~~a~~~L~nLs~~~~~~ 124 (314)
......++..+..|...+++...+.+.+.++.+.+.|..- ++. .-..=...|+-|+.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4445567788888888888888888899999998888543 111 1222345788889888888
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~ 203 (314)
..+-+.|....+.++....+. .++ ..-++.+|=...++..++ .|-..|.+++..+|..|..-|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~-~~l---~klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR-DDL---LKLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch-HHH---HHHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888889999999999987532 243 233566664333322222 2445778889999999999888764
No 284
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.73 E-value=1.6e+02 Score=26.48 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhh
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSV 258 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 258 (314)
..+..|.+.+=...-.++-.+.-|+...++ ....+.. -.+-.+++-+++-...+-..|+.++.-+-..-.....+ .
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e-~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--~ 167 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPE-SLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--E 167 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHH-HHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 344444444444444555555556554432 1111111 13444445455555566666666666654433332322 4
Q ss_pred hHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHH
Q 021317 259 LEKIVYDIAARVDGA-DKAAETAKRLLQDMVQR 290 (314)
Q Consensus 259 ~~~lv~~l~~~~~~~-~~~~~~A~~~L~~l~~~ 290 (314)
...++..|....+.+ .=.++.|-.+|..|+.+
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 555555555222111 11356666666666643
No 285
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=54.66 E-value=32 Score=25.85 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=32.3
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA 88 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 88 (314)
+++.|+.-|.++++++...|..+|...+.++.+...++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 478899999999999999999999999887766555553
No 286
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.32 E-value=19 Score=19.53 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhcc
Q 021317 64 TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS 101 (314)
Q Consensus 64 ~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~ 101 (314)
.+|..|+.+|+++ ....+++.|++.|.+
T Consensus 2 ~vR~~aa~aLg~~----------~~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL----------GDEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc----------CCHhHHHHHHHHhcC
Confidence 3677788888887 345567777777765
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.72 E-value=2.4e+02 Score=27.57 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=24.4
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh----h---cCCcHHHHHHhhccCC
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL----D---ATAVPPLINLLKDCKK 145 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~----~---~g~i~~Lv~lL~~~~~ 145 (314)
.+-.|+++|+.-+.+-......-+.. .. ...+..+. . ..++..+.+.+..+..
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34456666666555444444433332 11 11222222 2 2356666666766543
No 288
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=50.79 E-value=1.2e+02 Score=27.55 Aligned_cols=101 Identities=11% Similarity=-0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHHhH--hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHH-hccC----CCChhHHhhcCcHHH
Q 021317 23 YARRLNLMGPL--WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILT-LSAA----APNKPAIAASGAAPL 94 (314)
Q Consensus 23 ~~~~~a~~al~--l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~-La~~----~~~~~~i~~~g~l~~ 94 (314)
.+|...+.-+. +...++..+..+.+ .+.+..+.+-|..+++++....+.+|.. +..+ ...|..+.....+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 67777777655 44566777776664 5678888999988888888888888886 4333 234677778889999
Q ss_pred HHHHhccCCH----HHHHHHHHHHHHhcCCCCC
Q 021317 95 LVQILHSGSV----QGRVDAVTALHYLSTCKEN 123 (314)
Q Consensus 95 Lv~lL~~~~~----~~~~~a~~~L~nLs~~~~~ 123 (314)
|..+....++ .+...+-..|..++.++..
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 9998777766 8888888899998876543
No 289
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=50.36 E-value=55 Score=29.67 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCCCChhHHhhcC--cHHHHHHHhccC---CHHHHHHHHHHHHHhcCCCCCchhhh
Q 021317 65 LRELAAAAILTLSAAAPNKPAIAASG--AAPLLVQILHSG---SVQGRVDAVTALHYLSTCKENSSPIL 128 (314)
Q Consensus 65 ~~~~a~~~L~~La~~~~~~~~i~~~g--~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~ 128 (314)
+|..|...+..+...+.....+...+ .+..|+++++.+ ...++..|+.+|..++....-...+.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34445555555554556677777555 999999999875 46889999999999997654444433
No 290
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.90 E-value=99 Score=28.59 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh----ccCCchHHHHHHHHHHHHhcCChhhhhH-HHhccCC---
Q 021317 105 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK----DCKKYSKFAEKATALLEILSSSEEGRIA-ITNSDGG--- 176 (314)
Q Consensus 105 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~~a~~~L~~L~~~~~~~~~-i~~~~g~--- 176 (314)
..|..|+..|+.|+..-+ ..+.. -....+-.++. ++..+.+-++.|+.++..|+........ +...+..
T Consensus 226 TrR~AA~dfl~~L~~~~~--~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE--KQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CcHHHHHHHHHHHHHHHh--HHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 346788888988884311 11111 01122222332 3333446788899999888876543221 1100111
Q ss_pred HHHHHH----Hhh---cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317 177 ILTLVE----TVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 242 (314)
Q Consensus 177 v~~Lv~----ll~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 242 (314)
.+-+.. -|. +..+-++..|+..+...-..-+ ++.+. +.+|.+++.+.+++.-+...|+.++
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 111111 112 2346678888888887776543 34444 3899999999999999999988764
No 291
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.83 E-value=90 Score=24.21 Aligned_cols=70 Identities=26% Similarity=0.201 Sum_probs=49.0
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHHHHHHHhhcCCCHHH--HHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGADK--AAETAKRLLQDMVQ 289 (314)
Q Consensus 219 ~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~lv~~l~~~~~~~~~--~~~~A~~~L~~l~~ 289 (314)
++..|.+-+.++++.++..|..+|..|..++.. .+....++..++..+.. ....+. +++++..++.....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~-~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS-KKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH-TTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc-CCCCchhHHHHHHHHHHHHHHH
Confidence 466677778889999999999999999887743 23344566666554442 222333 78899888887764
No 292
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.74 E-value=93 Score=28.20 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=45.0
Q ss_pred hccCchhHHHHHhcC--CcHHHHHHhcCC---CHHHHHHHHHHHHHhccCCCChhHHh-------hcCcHHHHHHH
Q 021317 35 QLSKTRNKVKIATAG--AIPPLVELLKFQ---NGTLRELAAAAILTLSAAAPNKPAIA-------ASGAAPLLVQI 98 (314)
Q Consensus 35 ~~~~~~~~~~l~~~g--~v~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~i~-------~~g~l~~Lv~l 98 (314)
+...+.....+...+ .+..|++++..+ ..+++..|+.+|..++.+......|. ..|.++.+++-
T Consensus 249 ~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~ 324 (329)
T PF06012_consen 249 IHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRK 324 (329)
T ss_pred hCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHH
Confidence 444556666777655 899999999754 46789999999999998655444433 24677766653
No 293
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.49 E-value=1.7e+02 Score=27.14 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc------cCCHHHHHHHHHHHHHhcCCCCCchh-----------
Q 021317 64 TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH------SGSVQGRVDAVTALHYLSTCKENSSP----------- 126 (314)
Q Consensus 64 ~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~------~~~~~~~~~a~~~L~nLs~~~~~~~~----------- 126 (314)
+-+..|+..|..|+..-+ .-+..-....+-.+|. +.+...+..|+..+..|+........
T Consensus 226 TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 345677778888875311 1111111112223333 24678899999999999965543322
Q ss_pred --hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHH
Q 021317 127 --ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 199 (314)
Q Consensus 127 --i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 199 (314)
+...-++|.|. .+.+..+-++..|+..+...... -.+..+. +.+|.++.+|.+++.-+...|+.++
T Consensus 303 ~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11222334332 12233334555666666554443 2233333 4899999999999988888888764
No 294
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.04 E-value=15 Score=33.38 Aligned_cols=61 Identities=13% Similarity=-0.013 Sum_probs=50.6
Q ss_pred HHHHHHHhcc-CCCChhHHhhcCcHHHHHHHh--ccCCHHHHHHHHHHHHHhcC-CCCCchhhhh
Q 021317 69 AAAAILTLSA-AAPNKPAIAASGAAPLLVQIL--HSGSVQGRVDAVTALHYLST-CKENSSPILD 129 (314)
Q Consensus 69 a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL--~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~ 129 (314)
..+.+.+|+. +++++..+.+-||++.++.-. ++.+|-+++..+.++++|.. +.+|++.|.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4567888887 689999999999999988775 45689999999999999994 5578877765
No 295
>PLN03205 ATR interacting protein; Provisional
Probab=48.19 E-value=82 Score=29.37 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=66.4
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHH----HhcCChhhhhHHHhccCCHHHHHHHhh-----cCCHHHHHHHHHHHHHh
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLE----ILSSSEEGRIAITNSDGGILTLVETVE-----DGSLVSTQHAVGALLSL 202 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~----~L~~~~~~~~~i~~~~g~v~~Lv~ll~-----~~~~~~~~~A~~~L~~L 202 (314)
.+++|+++..-++. .++..+++.|+ +++.+...-..-- +...+. |.+++. +....++-.|+.++--+
T Consensus 324 LlEaLLdLC~v~n~--a~V~RsLRvLh~vLqHl~~~~~~~~~~~-~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 324 LVEPLLDLCKAETA--VLVHRSLRVLHVLLEHICGDEKRFEASW-DANWHS-LFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred HHHHHHHHHhcCch--hhhHHHHHHHHHHHHHHhCCcccccccc-cccHHH-HHHHHHHHHhccchhheeeehhhhhHHh
Confidence 34566666666544 55566666655 3444332211112 233333 333332 34466777888887666
Q ss_pred hccCcH-HHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCC
Q 021317 203 CQSCRD-KYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 203 ~~~~~~-~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~~~ 249 (314)
...... .-|+.+...-+++.+-++++.+ ...+|+.|.-+|+.|-+++
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 544322 3366666666788888888764 5889999998877765544
No 296
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.67 E-value=3.2e+02 Score=27.80 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=86.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHh
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITN 172 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~ 172 (314)
...+..+++..-...+.++.++..-+. .+. ...-+++-..-.... ...+......+|..++.. ++.-..+..
T Consensus 447 ~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~--~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 447 LKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKS--LGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHH--HHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 333445566666777777777764331 111 111122222222211 124556677788888877 556677776
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHHHHc-------CChHHHHHhhhc----CCHHHHHHHHH
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKE-------GAIPGLLRLTVE----GTFEAQERART 240 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i~~~-------g~v~~Lv~ll~~----~~~~~~~~A~~ 240 (314)
+.++...++.++-+++.++.+.|...|........ .+.-+++.+. |....|-++.+. ..|+.-+...-
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~D 601 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLMD 601 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 78999999999999999999999999999885431 1223333332 222222223222 23555555556
Q ss_pred HHHHhhcCCc
Q 021317 241 LLDLLRDTPQ 250 (314)
Q Consensus 241 ~L~~l~~~~~ 250 (314)
++..||+...
T Consensus 602 Ii~~Lcdp~~ 611 (727)
T PF12726_consen 602 IIEVLCDPVS 611 (727)
T ss_pred HHHHHcCCCC
Confidence 7777776543
No 297
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=47.47 E-value=2.6e+02 Score=26.68 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHHhhc--CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhcCC-
Q 021317 179 TLVETVED--GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDTP- 249 (314)
Q Consensus 179 ~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~~~- 249 (314)
.++..|.+ +..+....+-.++.||+..... . -.+..|..++++ .+..+-+.|+..++.+.-..
T Consensus 217 ~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g--~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 217 PCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG--H------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHhhHhcccccchhHHHHHHHHHcCccH--H------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 34444432 2346667788889999876421 1 145667776632 34566678888888876444
Q ss_pred ch--hhcch---hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 250 QE--KRLSS---SVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 250 ~~--~~~~~---~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
+. ..+.. -+++.+...+. .+.+..-.....++.++.
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~---~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALK---SNSPRVDYEILLLINRLL 329 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHh---CCCCeehHHHHHHHHHHH
Confidence 22 11111 14555544444 223444445555555555
No 298
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=47.39 E-value=79 Score=29.27 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=60.8
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~ 247 (314)
++..+.+.|.+.++.+...|+..|..+..++....|..+....+...|..++. ...+.+.+.-..++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56688888888899999999999999988877678888888899999999888 5678888888788888775
No 299
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=47.11 E-value=2.2e+02 Score=25.72 Aligned_cols=207 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhh-----cCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 021317 43 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAA-----SGAAPLLVQILHSGSVQGRVDAVTALHY 116 (314)
Q Consensus 43 ~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~-----~g~l~~Lv~lL~~~~~~~~~~a~~~L~n 116 (314)
..+.++|..+.|+..+...+-+.+..++....|+-..+ +.+...++ ...+..|+.-=.. .++.-..+-..|+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Q ss_pred hcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCC----HHHHHHHhhcCCHHH
Q 021317 117 LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGG----ILTLVETVEDGSLVS 191 (314)
Q Consensus 117 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~----v~~Lv~ll~~~~~~~ 191 (314)
-...+...+.+....-.......++.+.- ++..-|..+...+-+. ......+. .... .+.--.++.+++--+
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~F--diasdA~~tfK~llt~Hk~~vaEfl-~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNF--DIASDAFSTFKELLTRHKSVVAEFL-IRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccch--HHHHHHHHHHHHHHHHhHHHHHHHH-HhChhhhHHHHHHHHhcccceeh
Q ss_pred HHHHHHHHHHhhccCcH--HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317 192 TQHAVGALLSLCQSCRD--KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 253 (314)
Q Consensus 192 ~~~A~~~L~~L~~~~~~--~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 253 (314)
+..+...|..+-.+.++ ...+-+.+...++.++.++++.+..+|-.|--.-+-....++.+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q 292 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ 292 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc
No 300
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=46.82 E-value=1.8e+02 Score=29.52 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCC--ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhh
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPIL 128 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~ 128 (314)
..+...+.++++..-...+.++.++..-.. .+. ...-+++-..-.+..-.........+|..++. +++....+.
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345555566677766667777777765321 111 22233333333333344567778889999994 444444444
Q ss_pred -hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 129 -DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 129 -~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
+.++...++.++-++.+ ++.+.|..+|..... .+.|..
T Consensus 521 ~d~~~~~~i~s~lfsp~~--~l~qaA~~llk~~~d-~~~R~e 559 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDD--DLYQAAQDLLKQAFD-VDGRLE 559 (727)
T ss_pred cCcchhhHHHhheeCCCh--HHHHHHHHHHHHHhc-CCcHHH
Confidence 57899999999988755 788999999988764 444433
No 301
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=19 Score=32.74 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHcCChHHHHH--hhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 195 AVGALLSLCQSCRDKYRQLILKEGAIPGLLR--LTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 195 A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~--ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
..+.+++||...+ +.++.+.+-||++.++. .+.+.+|-+++..+-++++|..++.
T Consensus 376 vir~ia~lcyk~~-~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~ 432 (478)
T KOG2676|consen 376 VIRFIAFLCYKFS-TAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNI 432 (478)
T ss_pred HHHHHHHHHHhCC-chHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcch
Confidence 5568899998765 77889999999998887 4566789999999999999988774
No 302
>PRK14707 hypothetical protein; Provisional
Probab=43.50 E-value=5.9e+02 Score=29.68 Aligned_cols=270 Identities=16% Similarity=0.053 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLK--FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
.++..++..+.........++.-+..+ ...+|..+++-+. .++++.+..+...-..++.++.-+..+-..|.--.|=
T Consensus 176 ~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN 254 (2710)
T PRK14707 176 SDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALN 254 (2710)
T ss_pred CCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCC
Q 021317 97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGG 176 (314)
Q Consensus 97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 176 (314)
-+.+=++...-.+++.+|..=...+.....-.+..-+...+.-|+.-.+...-...+..+-..|..+.+-+..+- ..++
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~ 333 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGL 333 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHH
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCch-hh
Q 021317 177 ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTPQE-KR 253 (314)
Q Consensus 177 v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~~~~-~~ 253 (314)
-..|=.+-+..+..+...|+.+|..=-..+++ ...-++..++...+.-+.. +++..+..|..+-..+..+..- +.
T Consensus 334 ~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~--l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~ 411 (2710)
T PRK14707 334 STALNALSKWPDNPVCAAAVSALAERLVADPE--LRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG 411 (2710)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHhccCHh--hhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317 254 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 294 (314)
Q Consensus 254 ~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~ 294 (314)
+....+...+..|+.+.+ ..+-..|+..|..-+.+..+.
T Consensus 412 ~~~Q~van~lnalsKWPd--~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 412 LDPQGVSNALNALAKWPD--LPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred cchhhHHHHHHHhhcCCc--chhHHHHHHHHHHHHhccHHH
No 303
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=43.22 E-value=1.4e+02 Score=31.26 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317 150 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 228 (314)
Q Consensus 150 ~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 228 (314)
+..+.-+|.++|..++.- . -..+|.|++-|.- ....+|.+-.-+++.+|.+. .++++ ..+|.+..-++
T Consensus 948 ra~~vvTlakmcLah~~L---a--Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHDRL---A--KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHhhhhHH---H--HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHHHhc
Confidence 344555566776643321 1 1256677777754 34667777777777777542 23333 46899999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 229 EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 229 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
+.++-+++.+..+|.+|-...--+-...-+++.+ ....|.+++.+..|.-.+..+.+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~----l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIVKWNGELFIRFM----LALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHH----HHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999865443223333344433 33458889999999999988775
No 304
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=42.11 E-value=3.6e+02 Score=26.78 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHH
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINL 139 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~l 139 (314)
++.+|..+...|.--...- =..+..-.++.+....|.+.+..++.....+|..|+....+...+++ ...-..+++.
T Consensus 288 ~d~IRv~c~~~L~dwi~lv--P~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~ 365 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLV--PDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEF 365 (740)
T ss_pred hHHHHHHHHHHHHHHHhcc--hHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 4556655555554432210 12223445778888899999999999999999999988777775554 4566777788
Q ss_pred hhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 140 LKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 140 L~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
+..+.+ -++..+...+..+... ..-+...+..+..++-+..+.-++.-...+.++|..
T Consensus 366 ~r~D~d--~VRi~sik~l~~lr~l------g~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~ 423 (740)
T COG5537 366 LRTDSD--CVRICSIKSLCYLRIL------GVLSSSEILIVSSCMLDIIPDSRENIVESVESICKI 423 (740)
T ss_pred Hhhccc--hhhHHHHHHHHHHHHh------cccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 877654 2454555555443221 011223344444555565555455555556666644
No 305
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.29 E-value=81 Score=25.98 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=47.7
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~ 120 (314)
+|.+++=|...+...+..|...+..|-.. ...+-.-+=.-.+.++-+.|.+.++++...++.+|..|..+
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 44555555555555666677776666555 22232223456777888889999999999999999999644
No 306
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.90 E-value=2e+02 Score=23.60 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHH-HhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcC-------------------ChHHHHHhhhcC-CHHHHH
Q 021317 178 LTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG-------------------AIPGLLRLTVEG-TFEAQE 236 (314)
Q Consensus 178 ~~Lv~-ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g-------------------~v~~Lv~ll~~~-~~~~~~ 236 (314)
+.|+. ++.+.++++|..|+.+|..|-.+... +-...-+.. .=..|+..+..+ ++....
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 34444 45677899999999999998765421 111111111 112344444443 566777
Q ss_pred HHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHH
Q 021317 237 RARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 237 ~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~ 289 (314)
....+|..|....+-..+..|.+..++..+.... +.+...+..+..++..+..
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7788888888776655666777777666544222 3345667777777777663
No 307
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=40.32 E-value=5.4e+02 Score=30.25 Aligned_cols=198 Identities=17% Similarity=0.115 Sum_probs=99.2
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cC
Q 021317 85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SS 162 (314)
Q Consensus 85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~ 162 (314)
+..+.+-+..+...++++.-..+..+...+++|+.... ..-.-...--+..+-++-.++.. ...+.+..-+..+ ..
T Consensus 560 ~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~--r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMA--RTKEESAKLLCELIIS 637 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchH--HhHHHHHHHhhHHHHH
Confidence 34556667777777888888888889889988885432 11011111112222222222211 1111111111111 11
Q ss_pred ChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHH
Q 021317 163 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTL 241 (314)
Q Consensus 163 ~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~ 241 (314)
....-...+ ......++..+.+.+..+...+..++..||.....+. ....+ -.++.+.+.+.+ ++..-+..+.++
T Consensus 638 ~~~~i~~~v--~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~ 713 (2341)
T KOG0891|consen 638 SPVLISPYV--GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VKWVD-ELFSLIIKMLQDQSSLGKRLAALKA 713 (2341)
T ss_pred HHHHHHhhc--CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hhccc-hHHHHHHHHHHHhhhhhchhHHHHH
Confidence 122222222 2244566666677777778888889999987653222 22222 345555554444 445566677789
Q ss_pred HHHhhcCCch---hh-cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 242 LDLLRDTPQE---KR-LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 242 L~~l~~~~~~---~~-~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+.++.....- +. ...-.+..++..+. ..-..-.+..|...++++...
T Consensus 714 l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~--te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 714 LGQLESSTGYVVDPYLDYPELLDILINILK--TEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhhhhcccceEecccccChHHHHHHHHHHh--HhhhhHHHHHHHHHhhhhccc
Confidence 9998765532 11 12233333333333 111233566677777665543
No 308
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.23 E-value=67 Score=26.40 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=49.7
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhcc---CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQS---CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~---~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
.++.++++..+.+..++..|+..+.-+-.. +|. -.+|.|+.+..+.++.++..|...+..+.+-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---------QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 345667777778888888888888776542 222 27899999998899999999999999986533
No 309
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.13 E-value=1.8e+02 Score=29.25 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=69.0
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---chhhhh----cC---Cc-----------HHHHHHhhccCCchH
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN---SSPILD----AT---AV-----------PPLINLLKDCKKYSK 148 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~---~~~i~~----~g---~i-----------~~Lv~lL~~~~~~~~ 148 (314)
.-|..|+.+|++++..+.+.+-..+..+...+.. ...+++ .| ++ ..+++.|.+.-..+.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch
Confidence 3455667777777666666665555544432211 011111 11 11 123333333211224
Q ss_pred HHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcH
Q 021317 149 FAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRD 208 (314)
Q Consensus 149 ~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~ 208 (314)
.+..++.+|+.+... +..-..|. +...++.|+.+|.. .+..+...|+-+|..|-..-+.
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~i~-~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYKIL-QTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHh-cChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 456788999988876 55566666 78899999999875 4577778888888887655543
No 310
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.55 E-value=4e+02 Score=26.03 Aligned_cols=110 Identities=18% Similarity=-0.005 Sum_probs=64.3
Q ss_pred cHHHHHHhcC--------CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC----------CHHHHHHHHH
Q 021317 51 IPPLVELLKF--------QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG----------SVQGRVDAVT 112 (314)
Q Consensus 51 v~~Lv~lL~~--------~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~----------~~~~~~~a~~ 112 (314)
+|.++.++.. .+-.........++.|..++...-.-.=.-.+|.++.++-+. .-.+|..|+.
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ 320 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAAR 320 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHH
Confidence 4556666632 244566677777788877765544444456778888776432 3467888888
Q ss_pred HHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 113 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 113 ~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
.+..++.+..+.-.-.+..++..+.+.+.+........-.++..|..|
T Consensus 321 ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 321 LLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 888877655444333455566666666666433223333444444433
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.81 E-value=1.3e+02 Score=31.30 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcH-HHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIP-PLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~-~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
|+++++.|+.+|. ..+.-+++|...+. -|.-+ .=-.++. .+.....++.+.-.+ ..+....||+.|+
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw---------~~Vr~ndGIkiLl 745 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMW---------EAVRGNDGIKILL 745 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHH---------HHHhcCccHHHHH
Confidence 7999999999999 44555577754432 11100 0001111 112223333333322 2345678999999
Q ss_pred HHhccCC-----HHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317 97 QILHSGS-----VQGRVDAVTALHYLSTCKENSSPILDA 130 (314)
Q Consensus 97 ~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i~~~ 130 (314)
++|.-.. ..+|.-|+.+|.-|+.++..++.+.+.
T Consensus 746 ~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 746 KLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 9998653 367899999999999999887766663
No 312
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.59 E-value=56 Score=25.97 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=15.2
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
-+.+|+++|.+.+. .+...|..+|.+
T Consensus 95 NV~~LI~~L~~~d~--~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 95 NVQPLIDLLKSDDE--ELAEEAAEALKN 120 (154)
T ss_dssp THHHHHHGG--G-T--TTHHHHHHHHHT
T ss_pred cHHHHHHHHcCCcH--HHHHHHHHHHHh
Confidence 46778888865443 555667777764
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=35.77 E-value=1.8e+02 Score=21.46 Aligned_cols=69 Identities=16% Similarity=0.044 Sum_probs=41.7
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc----hhhhHHHHHHHhh---cCCCHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS----SSVLEKIVYDIAA---RVDGADKAAETAKRLLQDM 287 (314)
Q Consensus 219 ~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~----~~~~~~lv~~l~~---~~~~~~~~~~~A~~~L~~l 287 (314)
++..|.+-+.+.++.++..|..+|..|.++....... ..+...++..... ..+-+..+++++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4555555566778999999999999998877543322 2233333321011 1122466788888877654
No 314
>PF15573 Imm27: Immunity protein 27
Probab=35.52 E-value=1.5e+02 Score=25.22 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 52 PPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 52 ~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
+.|++++.+. +..+...+.+..+..|.|++-+. .+-+ +.|.+.+ ..+-..+.+++..|+..
T Consensus 49 ~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~~----~nNl----~FLs~asE~~v~TF~s~A~~tlSye--------- 111 (259)
T PF15573_consen 49 NLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLRD----SNNL----RFLSSASEFGVFTFASGAITTLSYE--------- 111 (259)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhcchHhhhc----ccce----ehHhhhhHHHHHHHHHHhhccchhh---------
Confidence 5678888755 67788889999999999866432 2222 2333333 34556677777776655
Q ss_pred cCCcHHHHHHhhc
Q 021317 130 ATAVPPLINLLKD 142 (314)
Q Consensus 130 ~g~i~~Lv~lL~~ 142 (314)
+||.|+.++.+
T Consensus 112 --VIPYLLaLlee 122 (259)
T PF15573_consen 112 --VIPYLLALLEE 122 (259)
T ss_pred --HHHHHHHHHHH
Confidence 89999999986
No 315
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.87 E-value=3.1e+02 Score=23.95 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred hHHHHHhcCCcH-HHHHHhcCC--CHHHHHHHHHHHHHhccCC-------------------------CChhHHhhcCcH
Q 021317 41 NKVKIATAGAIP-PLVELLKFQ--NGTLRELAAAAILTLSAAA-------------------------PNKPAIAASGAA 92 (314)
Q Consensus 41 ~~~~l~~~g~v~-~Lv~lL~~~--~~~~~~~a~~~L~~La~~~-------------------------~~~~~i~~~g~l 92 (314)
.++.+.+.++++ -|+.+|.+. ++.+-..++..|.+|+..- ..|..+.+.+++
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l 111 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVL 111 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 356777778776 788888643 6788888999999998721 124444556777
Q ss_pred HHHHHHhcc-----------CCHHHHHHHHHHHHHhcCCC
Q 021317 93 PLLVQILHS-----------GSVQGRVDAVTALHYLSTCK 121 (314)
Q Consensus 93 ~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~ 121 (314)
..+++.+.. .+....+..+..++|+..-+
T Consensus 112 ~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip 151 (266)
T PF04821_consen 112 KALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIP 151 (266)
T ss_pred HHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 777766632 13456788889999998543
No 316
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.01 E-value=1.5e+02 Score=22.09 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=43.3
Q ss_pred CHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHH-HHHHHHHHHHhhcCC
Q 021317 176 GILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEA-QERARTLLDLLRDTP 249 (314)
Q Consensus 176 ~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~-~~~A~~~L~~l~~~~ 249 (314)
.+|.+...+. +..++.+..+..++..|+...+ ... ..+..+++ ++.+..+.. ++.+..+|..++.+.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~-----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSD-----EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567777777 6678899999999999986542 111 24445554 344433333 477888888888655
No 317
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=33.43 E-value=47 Score=29.53 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=43.4
Q ss_pred hhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC---------------CCchhhhhcCCcHHHHHHhhc
Q 021317 87 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK---------------ENSSPILDATAVPPLINLLKD 142 (314)
Q Consensus 87 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---------------~~~~~i~~~g~i~~Lv~lL~~ 142 (314)
.+...+..+++-|.+++...+..|+.+|..++... .|...+.+.|++++|+.+|+.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34567788999999999999999999999998642 244455667888888888864
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.14 E-value=1.5e+02 Score=22.71 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=44.6
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhc-----C---CHHHHHHHHHHHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVED-----G---SLVSTQHAVGALLS 201 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~-----~---~~~~~~~A~~~L~~ 201 (314)
++..|.+-|++.++ .++..++.+|..|+.. ++.+..+....-.|..+..+-.. | ...+|..|-.++..
T Consensus 39 i~d~L~kRL~~~~~--hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 39 LLEYLLKRLKRSSP--HVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHhcCCCC--cchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 45566777776543 6778899999998876 34456665445556665555431 1 24567777766666
Q ss_pred hhc
Q 021317 202 LCQ 204 (314)
Q Consensus 202 L~~ 204 (314)
|..
T Consensus 117 if~ 119 (122)
T cd03572 117 IFS 119 (122)
T ss_pred Hhc
Confidence 543
No 319
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=3.4e+02 Score=29.17 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=63.5
Q ss_pred ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhh---ccCCchHHHHHHHHHH
Q 021317 82 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLK---DCKKYSKFAEKATALL 157 (314)
Q Consensus 82 ~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~~~a~~~L 157 (314)
.+..|...|++..+++.+-...+..+..-+..+..++ .++.|....-..|+++.|++++. +++. .....++.++
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgss--pfLshalkIv 977 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSS--PFLSHALKIV 977 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCc--hHhhccHHHH
Confidence 4788899999999999988888889888999999999 67788888888999999988874 2322 4555666666
Q ss_pred HHhcCC
Q 021317 158 EILSSS 163 (314)
Q Consensus 158 ~~L~~~ 163 (314)
..|+..
T Consensus 978 emLgay 983 (2799)
T KOG1788|consen 978 EMLGAY 983 (2799)
T ss_pred HHHhhc
Confidence 665544
No 320
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=32.83 E-value=3.7e+02 Score=24.16 Aligned_cols=126 Identities=12% Similarity=0.204 Sum_probs=81.7
Q ss_pred hhhhhcCCcHHHHHHhhc---------------------cCCchHHHHHHHHHHHHhcCChhhhhHH-------------
Q 021317 125 SPILDATAVPPLINLLKD---------------------CKKYSKFAEKATALLEILSSSEEGRIAI------------- 170 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~---------------------~~~~~~~~~~a~~~L~~L~~~~~~~~~i------------- 170 (314)
..+.+.|.||.|-++... .++...++..-+++++++|..+.++..+
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 345566777777666642 0111134556778888888754332211
Q ss_pred --------HhccCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHH-hhhcCC--HHHHH
Q 021317 171 --------TNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLR-LTVEGT--FEAQE 236 (314)
Q Consensus 171 --------~~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~-ll~~~~--~~~~~ 236 (314)
..+.|.+..++..+... +...+-+-+.++-..-.+.+. .-+..+.+.|.++.|+. ++.++. ..+-+
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 12356677788877653 466788888888888776554 34667788999999998 444443 45677
Q ss_pred HHHHHHHHhhcCCc
Q 021317 237 RARTLLDLLRDTPQ 250 (314)
Q Consensus 237 ~A~~~L~~l~~~~~ 250 (314)
.+--+|.-|.+.+.
T Consensus 163 ~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 163 SNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHCCCH
Confidence 77789999888774
No 321
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.15 E-value=7.6e+02 Score=27.60 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=83.2
Q ss_pred cCcHHHHHHH----hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317 89 SGAAPLLVQI----LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 89 ~g~l~~Lv~l----L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 164 (314)
...++.++.+ |++.++.++..+...-..+-...+ ...+..++..|+..+-+++. .-...|+.+|..|+..
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~--~ev~~aL~vL~~L~~~- 503 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNS--QEVDAALDVLCELAEK- 503 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhc-
Confidence 3566666655 567888888888777666654432 23344578888888877654 3347899999999863
Q ss_pred hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHH-HHH
Q 021317 165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERAR-TLL 242 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~-~~L 242 (314)
+...+...+-.+..++..+.+-+..=......+|+.|+...+.. -..+.+ -+..+++ .+.+.++..+..++ +++
T Consensus 504 -~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~-~s~i~d--el~ivIRKQLss~~~~~K~~GIIGav 579 (1426)
T PF14631_consen 504 -NPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSS-SSSIQD--ELHIVIRKQLSSSNPKYKRIGIIGAV 579 (1426)
T ss_dssp --HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS----HHHH--HHHHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCccc-chhhHH--HHHHHHHHhhcCCcHHHHHHhHHHHH
Confidence 33333322335566666666655444456678888887543211 111221 1455554 66667777776544 344
Q ss_pred HHh
Q 021317 243 DLL 245 (314)
Q Consensus 243 ~~l 245 (314)
..+
T Consensus 580 ~~i 582 (1426)
T PF14631_consen 580 MMI 582 (1426)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 322
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=31.39 E-value=3.7e+02 Score=25.94 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHhcCCc---HHHHHHh---cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhc-----------cCCHHH
Q 021317 44 KIATAGAI---PPLVELL---KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-----------SGSVQG 106 (314)
Q Consensus 44 ~l~~~g~v---~~Lv~lL---~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~-----------~~~~~~ 106 (314)
.+...|+. ..++.++ .+++.++...|-..|..+... .-+...+..|..+.. ..++.+
T Consensus 226 ~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~l 299 (501)
T PF13001_consen 226 KFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRL 299 (501)
T ss_pred HHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHH
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHH---HHhcCC-hhhhhHHHhccCCHHHHHH
Q 021317 107 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL---EILSSS-EEGRIAITNSDGGILTLVE 182 (314)
Q Consensus 107 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L---~~L~~~-~~~~~~i~~~~g~v~~Lv~ 182 (314)
|...+..|.. .....-.-...+..+..-+.+.....+++..++..+ .....+ .......+ .......+..
T Consensus 300 q~kIL~~L~k-----S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l-~~~i~~~g~p 373 (501)
T PF13001_consen 300 QEKILSLLSK-----SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLL-RPVILSQGWP 373 (501)
T ss_pred HHHHHHHHHH-----hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHH-HHHHHhcCcc
Q ss_pred Hhh--------cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 183 TVE--------DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 183 ll~--------~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
.+. ..+...|..+-.+|+.|+...+ .-..-+-+.++.|.+-+.+++++++-.-..+|..++.+
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p---~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP---SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHccCc---ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
No 323
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.02 E-value=1.3e+02 Score=23.46 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=53.6
Q ss_pred CcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHH-HHHHhcc---CCHHHHHHHHHHHHHhcCC
Q 021317 50 AIPPLVELLKF-QNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPL-LVQILHS---GSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 50 ~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~-Lv~lL~~---~~~~~~~~a~~~L~nLs~~ 120 (314)
++..|..-|.+ .++.+...|+..|-.+..+- .....|...+.+.. |++++.. .+..++...+..|...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 34567777764 58888888988888888763 44667778889987 9999863 3468899999998888743
No 324
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.96 E-value=1.7e+02 Score=28.09 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=53.2
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHH
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDL 244 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~ 244 (314)
+|..|-+.+.+.++.++-.|+..|-.+..++..-+...+.+.+++.-+|...+.. +..+|+....+|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 3446666666777888999999888887777656677888899999999887765 67888888877754
No 325
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=29.55 E-value=13 Score=35.41 Aligned_cols=59 Identities=17% Similarity=0.051 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 146 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 146 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
+++++..+.-++.+++.+.++|...+-+...-..+++++....+.+-+.+..++..+-.
T Consensus 341 n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 341 NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34788999999999999999988776455555677788877777777777777777663
No 326
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=6.6e+02 Score=26.06 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.5
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHH
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAP 93 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~ 93 (314)
.+|.++.+|.+++..+...|+.++-.+-.- +.+...|..++-++
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~ia 543 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIA 543 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcc
Confidence 467889999999999999999988885553 33455566554444
No 327
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=28.74 E-value=6.6e+02 Score=25.83 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=52.9
Q ss_pred HHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC
Q 021317 44 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 123 (314)
Q Consensus 44 ~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~ 123 (314)
.+.+.=+++.++..++++..=++.+|+..+..+..+ .+..-.-..+.+...++|.+++-.++..|+.+|.-+-.+...
T Consensus 455 n~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~ 532 (970)
T COG5656 455 NVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS 532 (970)
T ss_pred HHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh
Confidence 333444556666677777777788888888888443 222222234556667778888888888888888887766544
Q ss_pred chhhh
Q 021317 124 SSPIL 128 (314)
Q Consensus 124 ~~~i~ 128 (314)
...+.
T Consensus 533 h~k~s 537 (970)
T COG5656 533 HEKFS 537 (970)
T ss_pred hHHHH
Confidence 33333
No 328
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.49 E-value=1.3e+02 Score=22.95 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317 189 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 242 (314)
Q Consensus 189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 242 (314)
......++.++......-+ -..+.+.+.++.+.+++. ++..++.|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~---~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP---IELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC---HHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 7788999999999887543 566777788999999884 445577777665
No 329
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.24 E-value=1.4e+02 Score=21.39 Aligned_cols=59 Identities=24% Similarity=0.065 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 102 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
++-.+|..|+..|..++..-...-.-.+..++..+.+.+.+.+......-.|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999998654444444444566677777776554434445555555555
No 330
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.92 E-value=1.7e+02 Score=20.90 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC--CHHHHHHHHHHHHHh
Q 021317 61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYL 117 (314)
Q Consensus 61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~nL 117 (314)
++-.+|+.|+..|..++..-.....-.+...+..+.+.+.++ +....-.|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999886422221222234556667776654 455667777777666
No 331
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=26.75 E-value=4.1e+02 Score=25.54 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHhhc-CCHHHHHHHHHHHHHhhccC------------cHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHH
Q 021317 173 SDGGILTLVETVED-GSLVSTQHAVGALLSLCQSC------------RDKYRQLILKEGAIPGLLRLTVE-GTFEAQERA 238 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~------------~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A 238 (314)
+.+.|+.|+.+|.. .+..++.+|+..|..+..-. ++..-+.+.....+..|+..+-. .....-.++
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~ 139 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNG 139 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHH
Confidence 68899999999973 45778999998888874321 23556667777788888885442 334445556
Q ss_pred HH-HHHHhhc
Q 021317 239 RT-LLDLLRD 247 (314)
Q Consensus 239 ~~-~L~~l~~ 247 (314)
+. ++..+.+
T Consensus 140 v~IlieLIRk 149 (475)
T PF04499_consen 140 VSILIELIRK 149 (475)
T ss_pred HHHHHHHHHh
Confidence 65 4444433
No 332
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.49 E-value=3.7e+02 Score=22.17 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=50.0
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
-.+|.+++-|.......+..|...+..|... .....+.- ...+.++-..|.+.++ ++...++.+|..|+..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~--~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDP--EVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHh
Confidence 4667777777777777777888887777755 33333443 4577777777777644 8889999999988554
No 333
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.15 E-value=1.8e+02 Score=31.58 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=49.8
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 021317 48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 118 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs 118 (314)
.|++|.|-.-|.+++.+.|..|+..++.+-.....+-.=-........+.-+.+.+.++|..++....+.-
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH
Confidence 47788888888888999999999999998765433222012234455566677788888888877665554
No 334
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.14 E-value=1.1e+02 Score=21.59 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=39.8
Q ss_pred hcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh----ccCCHHHHHHHHHHH
Q 021317 47 TAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL----HSGSVQGRVDAVTAL 114 (314)
Q Consensus 47 ~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL----~~~~~~~~~~a~~~L 114 (314)
+...+.|+..++. ..+.++|+..+.++.++..... ..| .+| =+.+...+ .++++.+...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~--~~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG--ENI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH--HHH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4456677888764 4588999999999999876432 122 333 33444443 345666666666554
No 335
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.52 E-value=82 Score=28.01 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=40.7
Q ss_pred hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC---------------CCChhHHhhcCcHHHHHHHhcc
Q 021317 47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---------------APNKPAIAASGAAPLLVQILHS 101 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~---------------~~~~~~i~~~g~l~~Lv~lL~~ 101 (314)
+...+..+++-|.+.+...+..|+.+|..++.- ..|...+.+.|++++++.+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345566788889888899999999999999862 1234445567888888887753
No 336
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=1.5e+02 Score=30.80 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=0.0
Q ss_pred ccccCCHHHHHHHHHHhH---hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCc
Q 021317 16 METYFEGYARRLNLMGPL---WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGA 91 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~---l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~ 91 (314)
+|+.++..+|-+++..+. ..-.+.+|.-.=.-.-.+|.++..++..++-+...|..++.++.. ..+.-..=.-...
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dv 890 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDV 890 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHHHhcc
Q 021317 92 APLLVQILHS 101 (314)
Q Consensus 92 l~~Lv~lL~~ 101 (314)
+|.+-.++.+
T Consensus 891 lP~l~~~~~~ 900 (1014)
T KOG4524|consen 891 LPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHH
No 337
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=24.75 E-value=4.4e+02 Score=22.48 Aligned_cols=131 Identities=16% Similarity=0.079 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccC-----Cc------h-H----HHHHHHHHHHHhcCChhh
Q 021317 103 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK-----KY------S-K----FAEKATALLEILSSSEEG 166 (314)
Q Consensus 103 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~------~-~----~~~~a~~~L~~L~~~~~~ 166 (314)
++.....++..+..|...++....+.+.+.++.+.+.|..-+ .. + . +...-...|.-++.++.+
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 355566778888899988888888888888888888886431 10 0 1 122234557788888888
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHHHh
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l 245 (314)
.+.+- +.|....+..+....+. .....-++.+|=-.. .|-...++. .+.+++..+|..|..-|+.+
T Consensus 157 l~lLe-~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~----------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 157 LKLLE-RWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV----------DGHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHH-HCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC----------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 88887 68899998888876432 122333445542222 133444444 67788999999999888776
Q ss_pred h
Q 021317 246 R 246 (314)
Q Consensus 246 ~ 246 (314)
.
T Consensus 224 l 224 (226)
T PF14666_consen 224 L 224 (226)
T ss_pred h
Confidence 4
No 338
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.63 E-value=8.2e+02 Score=25.23 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=65.6
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH-hhcCCchhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL-LRDTPQEKRL 254 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~-l~~~~~~~~~ 254 (314)
.|+.|..+.++.-..++..++.++.+|-.+.|+ ++. +.+..|+.-+.+.+..+-..|.-.|.. ++.|+.-+.+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 667777777776688999999999998776664 222 346667777777777777777765555 4677764443
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 255 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 255 ~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
..+.++.+ +. ..+-+.++...|...|-.++
T Consensus 379 vi~EIer~---~F-Rpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VIDEIERL---AF-RPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHHHHHHH---Hc-ccCccccceeehhhhhhhhH
Confidence 33333332 22 23334566666666666555
No 339
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=23.17 E-value=1.6e+02 Score=23.42 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc
Q 021317 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED 186 (314)
Q Consensus 148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~ 186 (314)
.++-.|++.|..++..+.+...+..+.-+++.|+..|.+
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 467789999999999988888888788999999999865
No 340
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.80 E-value=1.4e+02 Score=28.91 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317 60 FQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLST 119 (314)
Q Consensus 60 ~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 119 (314)
+.+++++.+|..++.+++.+.++|.... +...-..+++++..+.+++-+.+..++..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3468899999999999999988877654 55566677888888877777777777666553
No 341
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.51 E-value=3.4e+02 Score=26.06 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=53.1
Q ss_pred hhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC--------------CChhHHhhcCcHHHHHHHhcc-CC
Q 021317 40 RNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA--------------PNKPAIAASGAAPLLVQILHS-GS 103 (314)
Q Consensus 40 ~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--------------~~~~~i~~~g~l~~Lv~lL~~-~~ 103 (314)
.....+.+.+.|+.|+.+|.. .+++.+..|+..|+.+..-. .-...+..+..+..|+..+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 344566689999999999973 37788889988888865421 113445566677777777543 33
Q ss_pred HHHHHHHHHHHHHhc
Q 021317 104 VQGRVDAVTALHYLS 118 (314)
Q Consensus 104 ~~~~~~a~~~L~nLs 118 (314)
.....+++.++..|-
T Consensus 133 ~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 133 GSSLVNGVSILIELI 147 (475)
T ss_pred cchHHHHHHHHHHHH
Confidence 555667777766665
No 342
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.07 E-value=2.2e+02 Score=26.55 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=55.9
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcC
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLST 119 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~ 119 (314)
++..+.+-|.+.++.+...|+..|..+..+- ..+..|....+...|-.++. +..+.+++.-..++.+.+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999988763 44666777788888888988 5677887777777777764
No 343
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=20.75 E-value=1.2e+02 Score=24.08 Aligned_cols=55 Identities=25% Similarity=0.220 Sum_probs=41.3
Q ss_pred hcCCcHHHHHHhcCCC--------------HHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhcc
Q 021317 47 TAGAIPPLVELLKFQN--------------GTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHS 101 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~--------------~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~~ 101 (314)
+.-+|..+-.+|.... .++|..|+..|..++.++.+...++ ...+++.|++.|.+
T Consensus 78 e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 78 ENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 4455667777774321 2578889999999999988777777 56899999998865
No 344
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=20.54 E-value=6.3e+02 Score=22.70 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=70.9
Q ss_pred hcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh--hhHHHhccCCHHHHHHHhhcC---CHHHHHHHHHHHHHhh
Q 021317 129 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG--RIAITNSDGGILTLVETVEDG---SLVSTQHAVGALLSLC 203 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~ 203 (314)
+.|.+..+++.+.........+-.-+.++-..-+.... .+.+..+.|.++.++.-+-++ +..+.......|+.|.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 35788888888876544434444455566666555433 333343789999999988654 3568889999999999
Q ss_pred ccCcHHHHHHH--HHcCChHHHHHhhhcC--CH-HHHHHHHHHHHHhhcCC
Q 021317 204 QSCRDKYRQLI--LKEGAIPGLLRLTVEG--TF-EAQERARTLLDLLRDTP 249 (314)
Q Consensus 204 ~~~~~~~~~~i--~~~g~v~~Lv~ll~~~--~~-~~~~~A~~~L~~l~~~~ 249 (314)
+.+.+..+..- ......+.+++.+... |. .--+.-.-.+..+....
T Consensus 173 K~n~~~f~~l~~~l~~~kF~~fl~~v~~nlVDSNvfiRsi~Ls~~~f~~~~ 223 (303)
T PF12463_consen 173 KFNRDAFQRLNKYLNNDKFQRFLEVVSDNLVDSNVFIRSIVLSLDHFKNEN 223 (303)
T ss_pred CCCHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcC
Confidence 98764322221 1111344555543331 22 22333345666666544
No 345
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.22 E-value=67 Score=23.87 Aligned_cols=27 Identities=37% Similarity=0.324 Sum_probs=19.9
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTL 76 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L 76 (314)
.-..|+.+|+++++.++..|+..+..+
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHh
Confidence 357889999999999998877654443
Done!