Query 021317
Match_columns 314
No_of_seqs 184 out of 1896
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 8.4E-36 2.9E-40 270.5 16.6 284 21-309 45-354 (354)
2 3nmz_A APC variant protein; pr 100.0 1.7E-33 5.7E-38 262.8 16.4 263 25-292 165-453 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 1.5E-31 5E-36 251.6 23.8 279 13-293 7-410 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 1.8E-31 6E-36 254.7 23.5 282 13-295 53-438 (584)
5 3nmw_A APC variant protein; AR 100.0 5.7E-32 1.9E-36 245.4 18.7 239 21-261 97-348 (354)
6 3ul1_B Importin subunit alpha- 100.0 1.4E-29 4.8E-34 241.3 25.5 281 14-300 106-398 (510)
7 3nmz_A APC variant protein; pr 100.0 1.9E-30 6.4E-35 242.2 17.8 232 20-253 212-456 (458)
8 4db8_A Armadillo-repeat protei 100.0 2.6E-30 8.8E-35 223.6 16.3 231 14-248 18-252 (252)
9 3now_A UNC-45 protein, SD10334 100.0 7.5E-30 2.6E-34 251.0 20.0 276 13-291 500-784 (810)
10 1xm9_A Plakophilin 1; armadill 100.0 2.9E-29 9.9E-34 236.0 22.6 271 13-290 49-450 (457)
11 3tpo_A Importin subunit alpha- 100.0 1.4E-28 4.8E-33 235.4 27.3 281 14-300 125-417 (529)
12 4hxt_A De novo protein OR329; 100.0 2.9E-29 1E-33 216.2 20.2 233 14-250 8-244 (252)
13 3now_A UNC-45 protein, SD10334 100.0 1.2E-29 4.3E-34 249.5 19.5 273 14-293 427-741 (810)
14 3ul1_B Importin subunit alpha- 100.0 2.3E-29 7.8E-34 239.8 20.5 276 14-293 63-349 (510)
15 3tpo_A Importin subunit alpha- 100.0 2.1E-28 7.3E-33 234.2 23.2 276 14-293 82-368 (529)
16 4b8j_A Importin subunit alpha- 100.0 1.3E-27 4.4E-32 228.4 26.0 270 14-290 123-401 (528)
17 3l6x_A Catenin delta-1; cateni 100.0 4.5E-28 1.5E-32 231.2 22.2 285 13-305 95-489 (584)
18 4hxt_A De novo protein OR329; 100.0 1.4E-27 4.6E-32 205.8 21.5 236 49-291 2-243 (252)
19 4b8j_A Importin subunit alpha- 100.0 4.8E-27 1.7E-31 224.4 24.7 273 14-292 80-361 (528)
20 1wa5_B Importin alpha subunit; 100.0 1.4E-26 4.8E-31 221.4 26.4 271 14-291 136-414 (530)
21 4db8_A Armadillo-repeat protei 99.9 2.8E-27 9.5E-32 204.5 16.2 234 49-289 12-251 (252)
22 2jdq_A Importin alpha-1 subuni 99.9 1.4E-25 4.8E-30 209.2 27.3 269 14-290 70-348 (450)
23 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-27 6.4E-32 202.4 11.9 196 49-248 8-230 (233)
24 1wa5_B Importin alpha subunit; 99.9 2.1E-25 7.1E-30 213.3 27.4 273 14-293 179-461 (530)
25 2jdq_A Importin alpha-1 subuni 99.9 3.5E-25 1.2E-29 206.5 28.2 272 14-293 113-394 (450)
26 1jdh_A Beta-catenin; beta-cate 99.9 5.1E-26 1.8E-30 216.6 21.7 270 14-291 23-297 (529)
27 4db6_A Armadillo repeat protei 99.9 5.1E-26 1.7E-30 191.3 18.3 198 47-248 10-210 (210)
28 3tt9_A Plakophilin-2; cell adh 99.9 5E-27 1.7E-31 199.7 12.1 191 14-205 14-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.2E-25 4.1E-30 219.9 22.5 271 14-292 20-295 (644)
30 1jdh_A Beta-catenin; beta-cate 99.9 4.9E-26 1.7E-30 216.7 17.2 271 14-291 65-341 (529)
31 2z6h_A Catenin beta-1, beta-ca 99.9 7.7E-25 2.6E-29 214.2 21.6 272 14-290 62-383 (644)
32 4db6_A Armadillo repeat protei 99.9 8E-25 2.7E-29 183.9 14.7 191 11-204 15-209 (210)
33 2z6g_A B-catenin; FULL-length, 99.9 3.1E-24 1.1E-28 213.9 21.1 270 14-291 156-430 (780)
34 2z6g_A B-catenin; FULL-length, 99.9 1.2E-23 4.2E-28 209.7 22.0 273 14-291 198-520 (780)
35 1xqr_A HSPBP1 protein; armadil 99.9 5.3E-23 1.8E-27 181.9 17.3 221 64-288 55-286 (296)
36 1xqr_A HSPBP1 protein; armadil 99.9 3.3E-22 1.1E-26 176.8 15.5 184 20-206 52-240 (296)
37 3opb_A SWI5-dependent HO expre 99.9 7.1E-21 2.4E-25 184.6 21.5 272 15-289 341-683 (778)
38 3opb_A SWI5-dependent HO expre 99.9 1.9E-21 6.4E-26 188.6 16.8 246 41-289 449-728 (778)
39 3grl_A General vesicular trans 99.5 1.4E-12 4.6E-17 123.9 21.3 266 18-291 32-344 (651)
40 3grl_A General vesicular trans 99.5 1.9E-12 6.6E-17 122.9 19.6 274 20-294 74-399 (651)
41 3ltm_A Alpha-REP4; protein eng 99.5 5.6E-12 1.9E-16 105.4 18.7 189 47-291 17-205 (211)
42 3ltm_A Alpha-REP4; protein eng 99.4 3E-12 1E-16 107.1 16.3 182 14-250 25-206 (211)
43 3ltj_A Alpharep-4; protein eng 99.4 5.1E-12 1.7E-16 104.8 17.3 179 13-246 19-197 (201)
44 3ltj_A Alpharep-4; protein eng 99.4 2.1E-11 7E-16 101.1 19.6 185 48-288 13-197 (201)
45 1oyz_A Hypothetical protein YI 99.4 6.5E-12 2.2E-16 109.6 16.7 220 14-288 29-249 (280)
46 1oyz_A Hypothetical protein YI 99.3 9.3E-11 3.2E-15 102.3 19.5 199 45-288 19-220 (280)
47 4gmo_A Putative uncharacterize 99.3 3.9E-12 1.3E-16 124.9 10.8 195 49-246 34-257 (684)
48 4fdd_A Transportin-1; heat rep 99.3 6.1E-11 2.1E-15 119.3 16.4 267 15-291 181-473 (852)
49 4fdd_A Transportin-1; heat rep 99.1 5.7E-10 1.9E-14 112.2 14.1 268 13-291 133-431 (852)
50 1b3u_A Protein (protein phosph 99.1 7.8E-10 2.7E-14 105.8 14.5 255 15-288 331-586 (588)
51 1b3u_A Protein (protein phosph 99.1 7.5E-10 2.6E-14 105.9 13.5 188 51-247 166-353 (588)
52 2vgl_B AP-2 complex subunit be 99.1 8E-10 2.7E-14 106.7 12.8 252 15-291 56-313 (591)
53 2vgl_B AP-2 complex subunit be 99.1 3.5E-09 1.2E-13 102.3 16.9 262 15-293 128-423 (591)
54 4gmo_A Putative uncharacterize 99.1 3.9E-10 1.3E-14 110.7 10.2 189 14-203 40-257 (684)
55 1ibr_B P95, importin beta-1 su 98.9 1.1E-08 3.7E-13 94.8 14.0 267 14-291 134-439 (462)
56 1qgr_A Protein (importin beta 98.9 4.3E-08 1.5E-12 98.2 19.0 269 17-291 181-481 (876)
57 1ibr_B P95, importin beta-1 su 98.9 5.4E-09 1.8E-13 96.9 10.7 246 15-267 179-457 (462)
58 2bpt_A Importin beta-1 subunit 98.7 2.8E-07 9.6E-12 92.1 17.9 263 17-290 188-483 (861)
59 1w63_A Adapter-related protein 98.7 5.5E-07 1.9E-11 87.3 18.1 249 15-289 77-379 (618)
60 2bpt_A Importin beta-1 subunit 98.7 1.3E-07 4.3E-12 94.7 13.0 267 15-290 376-669 (861)
61 1w63_A Adapter-related protein 98.7 1.1E-06 3.7E-11 85.3 18.7 246 15-289 149-414 (618)
62 3b2a_A TON_1937, putative unch 98.6 2.3E-06 7.9E-11 71.0 17.1 222 49-286 33-258 (265)
63 1qgr_A Protein (importin beta 98.6 2.6E-07 9E-12 92.5 12.9 223 16-248 225-480 (876)
64 2qk2_A LP04448P; mini spindles 98.5 7E-07 2.4E-11 75.9 11.4 183 52-248 18-206 (242)
65 2qk2_A LP04448P; mini spindles 98.5 4.9E-06 1.7E-10 70.6 15.2 184 94-293 19-209 (242)
66 1u6g_C TIP120 protein, CAND1; 98.4 3.9E-07 1.3E-11 95.0 9.3 262 15-290 13-285 (1230)
67 2vgl_A Adaptor protein complex 98.4 1.1E-05 3.7E-10 78.3 18.8 134 15-163 81-217 (621)
68 3b2a_A TON_1937, putative unch 98.4 3.2E-06 1.1E-10 70.1 12.4 215 12-242 37-256 (265)
69 1te4_A Conserved protein MTH18 98.4 3.4E-08 1.1E-12 76.0 0.5 121 47-201 10-130 (131)
70 1te4_A Conserved protein MTH18 98.3 1E-07 3.5E-12 73.2 1.3 116 11-159 15-130 (131)
71 2qk1_A Protein STU2; STU2P, XM 98.3 2.2E-05 7.5E-10 67.1 14.4 189 53-247 20-220 (249)
72 1u6g_C TIP120 protein, CAND1; 98.3 3.5E-06 1.2E-10 87.9 11.1 228 51-290 8-244 (1230)
73 2vgl_A Adaptor protein complex 98.2 3.9E-05 1.3E-09 74.3 17.0 212 18-248 158-399 (621)
74 3dad_A FH1/FH2 domain-containi 98.2 6E-05 2.1E-09 66.2 15.0 154 92-248 120-287 (339)
75 1ho8_A Vacuolar ATP synthase s 98.0 6E-05 2.1E-09 69.4 13.1 224 22-247 182-476 (480)
76 4ady_A RPN2, 26S proteasome re 98.0 0.0021 7.1E-08 64.2 24.5 228 22-294 451-681 (963)
77 2qk1_A Protein STU2; STU2P, XM 98.0 0.00016 5.4E-09 61.7 14.0 196 95-298 21-229 (249)
78 2iw3_A Elongation factor 3A; a 97.9 0.00037 1.2E-08 70.2 17.4 246 26-290 70-325 (986)
79 3dad_A FH1/FH2 domain-containi 97.8 0.00025 8.7E-09 62.2 13.0 183 52-236 121-325 (339)
80 1ho8_A Vacuolar ATP synthase s 97.7 0.00074 2.5E-08 62.2 15.0 231 54-291 172-478 (480)
81 3tjz_B Coatomer subunit gamma; 97.7 0.00015 5E-09 65.0 9.9 256 15-311 75-333 (355)
82 4ady_A RPN2, 26S proteasome re 97.7 0.0072 2.4E-07 60.5 22.1 230 17-285 481-715 (963)
83 2db0_A 253AA long hypothetical 97.6 0.0072 2.5E-07 48.4 17.1 184 88-289 30-246 (253)
84 3tjz_B Coatomer subunit gamma; 97.5 0.00054 1.9E-08 61.3 10.2 207 17-251 113-320 (355)
85 2fv2_A RCD1 required for cell 97.0 0.005 1.7E-07 51.8 10.5 173 25-202 73-266 (268)
86 2db0_A 253AA long hypothetical 97.0 0.088 3E-06 42.2 18.5 205 14-246 38-245 (253)
87 2iw3_A Elongation factor 3A; a 97.0 0.017 5.7E-07 58.3 15.4 223 49-289 54-280 (986)
88 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0096 3.3E-07 55.8 11.6 237 14-285 180-432 (800)
89 2fv2_A RCD1 required for cell 96.7 0.03 1E-06 47.1 12.6 219 20-245 13-266 (268)
90 4ffb_C Protein STU2; tubulin f 96.7 0.061 2.1E-06 46.1 15.3 183 15-206 16-214 (278)
91 3ebb_A Phospholipase A2-activa 96.4 0.02 6.9E-07 50.0 9.9 188 51-242 105-301 (304)
92 1lrv_A LRV, leucine-rich repea 96.3 0.024 8.1E-07 47.9 9.6 18 14-31 56-73 (244)
93 1wa5_C Importin alpha RE-expor 96.1 0.14 4.8E-06 51.9 15.9 220 19-246 416-669 (960)
94 1wa5_C Importin alpha RE-expor 96.0 0.16 5.6E-06 51.4 15.7 217 23-248 261-526 (960)
95 4ffb_C Protein STU2; tubulin f 95.8 0.3 1E-05 41.6 14.9 181 95-289 14-212 (278)
96 2of3_A ZYG-9; multifunctional 95.5 0.2 6.8E-06 42.7 12.1 184 16-214 54-246 (266)
97 1upk_A MO25 protein; transfera 95.4 1.3 4.4E-05 38.8 18.7 204 85-294 73-287 (341)
98 1lrv_A LRV, leucine-rich repea 95.3 0.03 1E-06 47.3 6.2 62 180-241 151-217 (244)
99 3oc3_A Helicase MOT1, MOT1; re 95.3 0.028 9.7E-07 52.7 6.3 185 22-243 242-432 (800)
100 3ebb_A Phospholipase A2-activa 95.2 0.14 4.7E-06 44.7 10.3 173 23-196 117-298 (304)
101 2of3_A ZYG-9; multifunctional 94.8 0.53 1.8E-05 40.0 12.7 178 51-247 48-236 (266)
102 4hat_C Exportin-1; heat repeat 94.1 0.22 7.4E-06 50.9 10.2 143 102-250 465-621 (1023)
103 3c2g_A SYS-1 protein; beta-cat 94.0 0.8 2.7E-05 40.5 12.0 112 73-186 266-378 (619)
104 2f31_A Diaphanous protein homo 93.9 0.5 1.7E-05 39.4 10.6 161 27-191 20-215 (233)
105 3eg5_B Protein diaphanous homo 93.9 3.5 0.00012 37.0 17.5 161 27-191 86-281 (383)
106 2x1g_F Cadmus; transport prote 93.7 1.5 5.2E-05 44.2 15.6 132 61-205 476-616 (971)
107 2f31_A Diaphanous protein homo 93.6 0.33 1.1E-05 40.4 8.9 104 148-251 69-184 (233)
108 3eg5_B Protein diaphanous homo 93.4 0.55 1.9E-05 42.3 10.4 125 125-250 104-249 (383)
109 2bnx_A Diaphanous protein homo 93.3 2.2 7.5E-05 38.4 14.3 105 147-251 72-188 (386)
110 2x1g_F Cadmus; transport prote 93.0 2.9 0.0001 42.1 16.4 134 102-248 476-616 (971)
111 2x19_B Importin-13; nuclear tr 93.0 6.6 0.00023 39.4 18.9 136 59-206 459-601 (963)
112 2x19_B Importin-13; nuclear tr 92.6 4.3 0.00015 40.7 17.0 138 100-249 459-601 (963)
113 2bnx_A Diaphanous protein homo 92.1 2.2 7.4E-05 38.4 12.5 160 28-191 25-219 (386)
114 1lsh_A Lipovitellin (LV-1N, LV 90.5 2 6.9E-05 44.0 11.8 166 91-291 392-578 (1056)
115 3l9t_A Putative uncharacterize 90.4 3.5 0.00012 34.2 11.1 140 55-216 77-219 (240)
116 3c2g_A SYS-1 protein; beta-cat 90.1 5.3 0.00018 35.4 12.3 134 107-245 260-401 (619)
117 3u0r_A Apoptosis inhibitor 5; 89.3 2.3 7.8E-05 39.2 9.9 120 100-242 38-158 (507)
118 3u0r_A Apoptosis inhibitor 5; 89.1 13 0.00045 34.2 14.7 121 18-158 38-159 (507)
119 4hat_C Exportin-1; heat repeat 88.7 1.5 5E-05 44.8 9.2 140 147-291 467-620 (1023)
120 1upk_A MO25 protein; transfera 88.2 13 0.00043 32.6 14.3 221 43-267 72-307 (341)
121 3m1i_C Exportin-1; heat repeat 87.7 3.5 0.00012 42.0 11.4 140 102-247 465-618 (1049)
122 3l9t_A Putative uncharacterize 85.8 2.9 0.0001 34.7 7.8 135 94-251 75-211 (240)
123 3ldz_A STAM-1, signal transduc 84.1 2.4 8.1E-05 32.2 6.1 72 176-247 43-114 (140)
124 1lsh_A Lipovitellin (LV-1N, LV 82.5 15 0.00053 37.5 13.1 118 62-201 408-540 (1056)
125 1x5b_A Signal transducing adap 81.7 3.4 0.00012 32.2 6.3 72 176-247 53-125 (163)
126 1mhq_A ADP-ribosylation factor 79.9 4.2 0.00014 31.1 6.2 72 176-247 39-116 (148)
127 3ibv_A Exportin-T; karyopherin 78.7 59 0.002 32.9 17.5 210 19-249 19-262 (980)
128 3g2s_A C-terminal fragment of 78.6 5.5 0.00019 30.5 6.4 72 176-247 49-126 (149)
129 1juq_A ADP-ribosylation factor 77.7 5.1 0.00017 31.5 6.1 72 176-247 51-128 (171)
130 3ibv_A Exportin-T; karyopherin 77.2 25 0.00086 35.6 12.6 178 21-206 56-262 (980)
131 3m1i_C Exportin-1; heat repeat 74.9 42 0.0014 34.0 13.7 100 188-291 466-571 (1049)
132 3gae_A Protein DOA1; UFD3, CDC 74.4 6.7 0.00023 32.9 6.4 104 59-165 100-220 (253)
133 3qml_C Protein SLS1, nucleotid 73.6 28 0.00094 30.0 9.9 136 21-161 41-188 (315)
134 3qml_C Protein SLS1, nucleotid 72.5 46 0.0016 28.6 13.2 152 133-289 24-189 (315)
135 1vdy_A Hypothetical protein (R 69.8 17 0.00057 27.5 7.0 74 176-249 50-132 (140)
136 1vsy_5 Proteasome activator BL 68.9 2.7 9.3E-05 42.6 3.2 190 91-290 761-967 (997)
137 3gjx_A Exportin-1; transport, 67.3 1.2E+02 0.004 31.1 15.2 204 20-248 40-276 (1073)
138 3gae_A Protein DOA1; UFD3, CDC 64.8 3.2 0.00011 34.9 2.3 101 19-122 101-220 (253)
139 3ldz_A STAM-1, signal transduc 64.4 5 0.00017 30.3 3.2 70 50-119 43-114 (140)
140 3zyq_A Hepatocyte growth facto 62.4 12 0.00042 30.6 5.5 72 176-247 46-118 (226)
141 3a6p_A Exportin-5; exportin-5, 61.3 39 0.0013 35.0 10.2 181 18-206 57-278 (1204)
142 3gjx_A Exportin-1; transport, 59.7 23 0.0008 36.2 8.0 100 103-206 492-597 (1073)
143 1dvp_A HRS, hepatocyte growth 59.7 16 0.00056 29.7 5.7 72 176-247 43-115 (220)
144 1x5b_A Signal transducing adap 58.1 8.9 0.0003 29.8 3.6 69 51-119 54-125 (163)
145 1elk_A Target of MYB1; superhe 56.9 26 0.00089 26.8 6.2 72 176-247 54-130 (157)
146 3g2s_A C-terminal fragment of 56.0 10 0.00035 28.9 3.6 70 50-119 49-126 (149)
147 3a6p_A Exportin-5; exportin-5, 54.4 1.8E+02 0.0061 30.1 13.7 124 62-204 26-162 (1204)
148 3o2t_A Symplekin; heat repeat, 51.4 1.2E+02 0.004 27.0 10.2 65 49-117 63-127 (386)
149 3vld_A DNA mismatch repair pro 51.1 1.5E+02 0.0051 27.3 13.1 129 62-200 92-221 (500)
150 4atg_A TAF6; transcription, TF 51.0 73 0.0025 25.4 8.0 112 51-162 42-162 (196)
151 1juq_A ADP-ribosylation factor 50.1 14 0.00049 28.8 3.7 69 51-119 52-128 (171)
152 1mhq_A ADP-ribosylation factor 48.8 45 0.0016 25.2 6.3 71 219-289 39-116 (148)
153 3pst_A Protein DOA1; protein d 47.8 1.6E+02 0.0054 26.6 10.5 131 66-206 243-391 (425)
154 3zyq_A Hepatocyte growth facto 46.0 14 0.00049 30.2 3.2 69 51-119 47-118 (226)
155 3gs3_A Symplekin, LD45768P; he 41.4 1.5E+02 0.0052 24.6 9.9 63 176-244 54-116 (257)
156 3gs3_A Symplekin, LD45768P; he 39.4 1.6E+02 0.0056 24.4 10.7 61 52-116 56-116 (257)
157 1elk_A Target of MYB1; superhe 36.9 86 0.0029 23.8 6.3 71 219-289 54-130 (157)
158 3o2t_A Symplekin; heat repeat, 36.0 69 0.0024 28.5 6.2 66 174-245 62-127 (386)
159 3l3f_X Protein DOA1, DOA1/UFD3 35.1 1.3E+02 0.0044 26.5 7.8 131 66-206 180-328 (362)
160 1vdy_A Hypothetical protein (R 34.0 1.4E+02 0.0048 22.3 6.8 70 219-288 50-129 (140)
161 1dvp_A HRS, hepatocyte growth 32.7 1.1E+02 0.0038 24.6 6.6 69 219-289 43-115 (220)
162 3pst_A Protein DOA1; protein d 32.2 1.1E+02 0.0037 27.6 6.9 99 19-120 273-390 (425)
163 3l3f_X Protein DOA1, DOA1/UFD3 30.7 1E+02 0.0034 27.2 6.3 99 19-120 210-327 (362)
164 2xpp_A IWS1, ECU08_0440; trans 29.0 1.8E+02 0.0063 21.8 9.8 79 78-159 49-133 (145)
165 3v69_A Protein filia; RNA-bind 28.7 51 0.0018 24.6 3.4 35 271-305 105-139 (140)
166 4atg_A TAF6; transcription, TF 28.7 1.7E+02 0.0058 23.2 6.8 112 91-203 41-161 (196)
167 3rru_A TOM1L1 protein; structu 27.6 1.1E+02 0.0039 23.1 5.4 72 176-247 54-130 (152)
168 3vld_A DNA mismatch repair pro 21.7 4.7E+02 0.016 24.0 10.5 166 64-248 51-226 (500)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=8.4e-36 Score=270.52 Aligned_cols=284 Identities=18% Similarity=0.135 Sum_probs=231.7
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA 88 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~-~~~~i~~ 88 (314)
+...+..|+++|.+++.++++|..+++.|++++|+.+|.. .+++++..|+++|.||+..++ ++..|..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4466778999999777789999999999999999999952 246789999999999998765 7777765
Q ss_pred c-CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-Ch
Q 021317 89 S-GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SE 164 (314)
Q Consensus 89 ~-g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~ 164 (314)
. |+||+|+++|+++++++++.|+++|+||+.. +++|..+++.|++++|+++|.... +..+++.++++|+||+. ++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccCh
Confidence 4 5599999999999999999999999999974 468999999999999999865432 23788899999999999 67
Q ss_pred hhhhHHHhccCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 021317 165 EGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER 237 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~~~~----~~~~~A~~~L~~L~~---~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~ 237 (314)
+++..++...|+++.|+.+|.++++ .+++.|+++|+||+. .+ +++++.+.+.|+++.|++++++++..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 8888887568999999999987654 589999999999997 34 378999999999999999999999999999
Q ss_pred HHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC
Q 021317 238 ARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPS 309 (314)
Q Consensus 238 A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~~~~~ 309 (314)
|+++|+||+...++ .+.+.|+++.++..|. +++++.++.|..+|.+|...++++-....+...+.+-||
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s~~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~~~~~~~~ 354 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCCGGGC-------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCcCcCCC
Confidence 99999999954432 4567899998876654 567899999999999999887777666666666666664
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=262.82 Aligned_cols=263 Identities=18% Similarity=0.151 Sum_probs=225.2
Q ss_pred HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCC-ChhHHhh-cCc
Q 021317 25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA-SGA 91 (314)
Q Consensus 25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~-~~~~i~~-~g~ 91 (314)
+.+|+++|.+.+.++++|..+.+.|++++|+.+|.. .++.++..|+++|.||+..++ ++..+.. .|+
T Consensus 165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 348999999778889999999999999999999942 246789999999999998765 6667764 456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-Chhhhh
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRI 168 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~ 168 (314)
+|+|+++|++++++++..|+++|+||+.. +++|..+++.|++++|+++|.+.. +..+++.++++|+||+. +++++.
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHHH
Confidence 99999999999999999999999999974 468899999999999999865432 33788999999999999 778888
Q ss_pred HHHhccCCHHHHHHHhhcCCH----HHHHHHHHHHHHhhc---cCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 021317 169 AITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL 241 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~----~~~~~A~~~L~~L~~---~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~ 241 (314)
.++...|+++.|+.+|.++++ .+++.|+++|+||+. .+ +++++.+++.|+++.|++++++++..+++.|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHH
Confidence 887568999999999987654 489999999999997 44 4789999999999999999999999999999999
Q ss_pred HHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317 242 LDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 292 (314)
Q Consensus 242 L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~ 292 (314)
|+||+...++ .+.+.|+++.++..|. .++++.++.|..+|.+|..+++
T Consensus 403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~---s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 403 LWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHSSCHHHHHHHHHHTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCCH
Confidence 9999954432 4567889998876654 5678899999999999997654
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.5e-31 Score=251.61 Aligned_cols=279 Identities=19% Similarity=0.210 Sum_probs=232.3
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcC
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASG 90 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g 90 (314)
.+.+|++++++.|..|+++|. ++..++.++..+++.|++|.|+++|++++++++..|+++|.||+.. ++++..|++.|
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G 86 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQN 86 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 357889999999999999999 6667777888999999999999999999999999999999999986 78999999999
Q ss_pred cHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh--------ccC------CchHHHHHHHH
Q 021317 91 AAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK--------DCK------KYSKFAEKATA 155 (314)
Q Consensus 91 ~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~--------~~~------~~~~~~~~a~~ 155 (314)
++|+|+++|. ++++++++.++++|.||+.+++++..+++ |++++|+++|. ++. .+..+...|++
T Consensus 87 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 87 GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 9999999999 88999999999999999988999999999 99999999993 221 23466779999
Q ss_pred HHHHhcCChhhhhHHHhcc-CCHHHHHHHhhc------------------------------------------------
Q 021317 156 LLEILSSSEEGRIAITNSD-GGILTLVETVED------------------------------------------------ 186 (314)
Q Consensus 156 ~L~~L~~~~~~~~~i~~~~-g~v~~Lv~ll~~------------------------------------------------ 186 (314)
+|+||+.+++++..+. +. |+++.|+.+|.+
T Consensus 166 aL~nLs~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (457)
T 1xm9_A 166 CLRNLSSADAGRQTMR-NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244 (457)
T ss_dssp HHHHHTTSHHHHHHHT-TSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------
T ss_pred HHHHHccCHHHHHHHH-HcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccc
Confidence 9999999988888888 66 999999988763
Q ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhhccCcH---HH-H
Q 021317 187 ---------------------------------------------------GSLVSTQHAVGALLSLCQSCRD---KY-R 211 (314)
Q Consensus 187 ---------------------------------------------------~~~~~~~~A~~~L~~L~~~~~~---~~-~ 211 (314)
.++.+++.|+++|+|||..+.+ .. +
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~ 324 (457)
T 1xm9_A 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324 (457)
T ss_dssp ---------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH
T ss_pred cccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHH
Confidence 1245667789999999976432 22 3
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCC---CHHHHHHHHHHHHHHH
Q 021317 212 QLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKRLLQDM 287 (314)
Q Consensus 212 ~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~---~~~~~~~~A~~~L~~l 287 (314)
..+.+.|++|.|++++.++++.+++.|+++|++|+.+.+. ..+..+++++++..|..... .+++....|..+|.++
T Consensus 325 ~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni 404 (457)
T 1xm9_A 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404 (457)
T ss_dssp HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3344689999999999999999999999999999987643 45567889988877762211 1356778889999998
Q ss_pred HHHHHH
Q 021317 288 VQRSME 293 (314)
Q Consensus 288 ~~~s~~ 293 (314)
...+.+
T Consensus 405 ~~~~~~ 410 (457)
T 1xm9_A 405 MASQPQ 410 (457)
T ss_dssp HTTCTH
T ss_pred HhcCHH
Confidence 865543
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.8e-31 Score=254.65 Aligned_cols=282 Identities=17% Similarity=0.187 Sum_probs=229.4
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhc
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAAS 89 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~ 89 (314)
.|.+|.++++.+|..|+++|. ++..++++|..+++.|+||+|+++|.++++++++.|+++|.||+.. +++|..|.+.
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~ 132 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC 132 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc
Confidence 378899999999999999999 7778999999999999999999999999999999999999999984 6899999999
Q ss_pred CcHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc----------------cCCchHHHHH
Q 021317 90 GAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD----------------CKKYSKFAEK 152 (314)
Q Consensus 90 g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~----------------~~~~~~~~~~ 152 (314)
|+||+|+++|.+ ++.+++++++++|+||+.+++++..|++ +++++|++++.. ...+..++++
T Consensus 133 GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~n 211 (584)
T 3l6x_A 133 DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211 (584)
T ss_dssp THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHH
Confidence 999999999998 5889999999999999999999999996 579999998721 1224588999
Q ss_pred HHHHHHHhcCChh-hhhHHHhccCCHHHHHHHhhc---------------------------------------------
Q 021317 153 ATALLEILSSSEE-GRIAITNSDGGILTLVETVED--------------------------------------------- 186 (314)
Q Consensus 153 a~~~L~~L~~~~~-~~~~i~~~~g~v~~Lv~ll~~--------------------------------------------- 186 (314)
|+++|.||+.+.+ +|..++...|+++.|+.++++
T Consensus 212 Aa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~ 291 (584)
T 3l6x_A 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVAN 291 (584)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccc
Confidence 9999999998864 477777445666666666542
Q ss_pred -----------------------------CCHHHHHHHHHHHHHhhccCc---HHHHHHHHHcCChHHHHHhhhcCCHHH
Q 021317 187 -----------------------------GSLVSTQHAVGALLSLCQSCR---DKYRQLILKEGAIPGLLRLTVEGTFEA 234 (314)
Q Consensus 187 -----------------------------~~~~~~~~A~~~L~~L~~~~~---~~~~~~i~~~g~v~~Lv~ll~~~~~~~ 234 (314)
.++.+++.|+++|+|||.+.. ..++..+.+.|+++.|++++.++++.+
T Consensus 292 ~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v 371 (584)
T 3l6x_A 292 NTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV 371 (584)
T ss_dssp ----CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHH
T ss_pred cccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 234556677777777765431 133444555789999999999999999
Q ss_pred HHHHHHHHHHhhcCCch-hhcchhhhHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHHHHHHh
Q 021317 235 QERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG-----ADKAAETAKRLLQDMVQRSMELS 295 (314)
Q Consensus 235 ~~~A~~~L~~l~~~~~~-~~~~~~~~~~lv~~l~~~~~~-----~~~~~~~A~~~L~~l~~~s~~~~ 295 (314)
++.|+++|+||+.++.. ..+..|+++.+|..|...... .++....|..+|.|++..+++..
T Consensus 372 ~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 372 VKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999987743 456788899888777632111 36778899999999986655443
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.7e-32 Score=245.36 Aligned_cols=239 Identities=21% Similarity=0.230 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHhH-hhccCchhHHHHHhc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHHH
Q 021317 21 EGYARRLNLMGPL-WQLSKTRNKVKIATA-GAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLV 96 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~~~~~~~~~l~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~Lv 96 (314)
++.+|+.|+++|. ++..++++|..+... |++|.|+++|+++++++++.|+++|.||+.. +++|..|.+.|++|+|+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 5788999999999 666677788888654 5599999999999999999999999999985 46899999999999999
Q ss_pred HHh-ccCCHHHHHHHHHHHHHhcC-CCCCchhhh-hcCCcHHHHHHhhccCCc--hHHHHHHHHHHHHhcC----Chhhh
Q 021317 97 QIL-HSGSVQGRVDAVTALHYLST-CKENSSPIL-DATAVPPLINLLKDCKKY--SKFAEKATALLEILSS----SEEGR 167 (314)
Q Consensus 97 ~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~~--~~~~~~a~~~L~~L~~----~~~~~ 167 (314)
++| +++++.+++.|+.+|+||+. +++++..++ ..|+++.|+++|.++++. ..+++.|+++|+||+. +++++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 975 66789999999999999997 678899998 689999999999886542 1578899999999995 78888
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
..+. +.|+++.|+.+|++++..+++.|+++|+||+..++ +.++.+++.|+++.|+++++++++.+++.|+++|.+|+.
T Consensus 257 ~~i~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 257 QILR-ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHH-TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHH-HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8888 79999999999999999999999999999997654 789999999999999999999999999999999999999
Q ss_pred CCchhhcchhhhHH
Q 021317 248 TPQEKRLSSSVLEK 261 (314)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (314)
+.+.++.+..++.+
T Consensus 335 ~~~~~~~~~~~~~~ 348 (354)
T 3nmw_A 335 NRPAKYKDANIMSP 348 (354)
T ss_dssp TCCGGGC-------
T ss_pred CCHHHHhhhcccCC
Confidence 88766665555443
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=1.4e-29 Score=241.30 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=240.4
Q ss_pred eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
|.+|+ ++++.+|..|+++|. +++.+++++..+++.|++|.|+.+|.++++++++.|+++|+||+.+. .++..+.+.|
T Consensus 106 V~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G 185 (510)
T 3ul1_B 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHG 185 (510)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 56675 456899999999999 77889999999999999999999999999999999999999999874 6788889999
Q ss_pred cHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317 91 AAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 91 ~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 164 (314)
++++|+.+|.+++ ...+..++++|.|++.+......+.. .|+++.|+.++.+.++ +++..++++|++|+.+.
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGP 263 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSC
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhch
Confidence 9999999998754 45788999999999987766655554 7899999999988654 78899999999999887
Q ss_pred hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
+.+..++.+.|+++.|+.+|.+++..++..++++|+|++..++ ..+..+.+.|+++.|+.++++.++.+++.|+|+|.|
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6665555489999999999999999999999999999998764 678889999999999999999999999999999999
Q ss_pred hhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021317 245 LRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ 300 (314)
Q Consensus 245 l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~ 300 (314)
++.+... .+...|+++.++..+. +++.+.++.|..+|.|+...........++
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~ 398 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKEAAWAITNYTSGGTVEQIVYLV 398 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9987643 3556788998887776 566899999999999999764444444443
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=242.22 Aligned_cols=232 Identities=22% Similarity=0.241 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHHHHHh-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC--CCChhHHhhcCcHHHH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLL 95 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~l~~L 95 (314)
.++..|+.|+++|. ++..++.++..+.. .|++|.|+.+|.++++++++.|+++|.||+.. +++|..|.+.|++|+|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 35778999999999 66666668877765 45699999999999999999999999999985 4688999999999999
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHhcC-CCCCchhhh-hcCCcHHHHHHhhccCCch--HHHHHHHHHHHHhcC----Chhh
Q 021317 96 VQIL-HSGSVQGRVDAVTALHYLST-CKENSSPIL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEG 166 (314)
Q Consensus 96 v~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~--~~~~~a~~~L~~L~~----~~~~ 166 (314)
+++| +++++.+++.++.+|+||+. +++++..|+ ..|+++.|+.+|.++++.. .+++.|+++|+||+. ++++
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 9975 56789999999999999997 778999998 6899999999999865421 478899999999995 7888
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+..+. +.|+++.|+.+|++++..+++.|+++|+||+..++ +.+..+++.|+++.|+++++++++.+++.|+++|.||+
T Consensus 372 ~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 372 RQILR-ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHH-HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 88888 79999999999999999999999999999997654 78999999999999999999999999999999999999
Q ss_pred cCCchhh
Q 021317 247 DTPQEKR 253 (314)
Q Consensus 247 ~~~~~~~ 253 (314)
.+.+.++
T Consensus 450 ~~~p~ky 456 (458)
T 3nmz_A 450 ANRPAKY 456 (458)
T ss_dssp TCCSCC-
T ss_pred cCCHhhh
Confidence 8876554
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=2.6e-30 Score=223.62 Aligned_cols=231 Identities=23% Similarity=0.230 Sum_probs=210.6
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~ 91 (314)
+.+|+++++++|..|+++|. +++.+++++..+.+.|++|.|+++|++++++++..|+.+|.+++. +++++..+.+.|+
T Consensus 18 ~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (252)
T 4db8_A 18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (252)
T ss_dssp HHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 57889999999999999996 666688899999999999999999999999999999999999998 5688999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~ 169 (314)
++.|+++|.++++.++..|+++|.||+.+++++ ..+.+.|+++.|+++|.+++ ..++..++++|+||+.+. +.+..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999999999999998888 88889999999999998864 388999999999999864 55566
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+. +.|+++.|+.++.++++.+++.|+++|.+|+..++ +.+..+.+.|+++.|+++++++++.+++.|+++|.+|+.+
T Consensus 176 ~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 176 VI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 66 79999999999999999999999999999997764 6788899999999999999999999999999999999753
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=7.5e-30 Score=251.02 Aligned_cols=276 Identities=15% Similarity=0.091 Sum_probs=235.6
Q ss_pred eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh---hc
Q 021317 13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA---AS 89 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~---~~ 89 (314)
.+.+++++++.+|+.|+++|.+.+.++++|..+++.|++|+|+.+|.++++..++.|+++|.||+.+.+....+. ..
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~ 579 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence 368889999999999999999666788999999999999999999999999999999999999987644333221 24
Q ss_pred CcHHHHHHHhccC-CHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh
Q 021317 90 GAAPLLVQILHSG-SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR 167 (314)
Q Consensus 90 g~l~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 167 (314)
|++|+|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+|.++++ .++..|+++|+||+.+++.+
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~--~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL--YLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT--THHHHHHHHHHHHTTSHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCChHHH
Confidence 6999999999876 455667899999999976 5788999999999999999998765 78899999999999999999
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
..++...|+++.|+.++.+.+..+++.|+++|+||+.+++ +..+.+++ .|+++.|+++++++++.+|+.|+++|.|+.
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV-KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH-HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8888337999999999999999999999999999998653 56778888 899999999999999999999999999998
Q ss_pred cCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 247 DTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 247 ~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.+..+ .+.+.|+++.++..+......+.+..+.|..+|.++.+..
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 86542 4567888888765554221235788999999999998653
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.9e-29 Score=235.97 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=223.9
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASG 90 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g 90 (314)
.+.+|+++++.+|+.|+++|. ++..++++|..+++.|++|+|+++|. ++++++++.|+++|+||+.++++|..+.+ |
T Consensus 49 Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g 127 (457)
T 1xm9_A 49 LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-D 127 (457)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-H
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-c
Confidence 367889999999999999999 66666999999999999999999998 88999999999999999999999999999 9
Q ss_pred cHHHHHHHhc--------cC--------CHHHHHHHHHHHHHhcCCCCCchhhhhc-CCcHHHHHHhhcc------CC--
Q 021317 91 AAPLLVQILH--------SG--------SVQGRVDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKDC------KK-- 145 (314)
Q Consensus 91 ~l~~Lv~lL~--------~~--------~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~lL~~~------~~-- 145 (314)
++|+|+++|. ++ ++.+..+|+++|+||+.+++++..+++. |++++|+.+|+++ +.
T Consensus 128 ~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~ 207 (457)
T 1xm9_A 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS 207 (457)
T ss_dssp HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTT
T ss_pred cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHH
Confidence 9999999993 22 4566679999999999888899999997 9999999988741 00
Q ss_pred --------------------------------------------------------------------------------
Q 021317 146 -------------------------------------------------------------------------------- 145 (314)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (314)
T Consensus 208 ~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 287 (457)
T 1xm9_A 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287 (457)
T ss_dssp HHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHH
T ss_pred HHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHH
Confidence
Q ss_pred ---------chHHHHHHHHHHHHhcCChhh-----hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317 146 ---------YSKFAEKATALLEILSSSEEG-----RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR 211 (314)
Q Consensus 146 ---------~~~~~~~a~~~L~~L~~~~~~-----~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~ 211 (314)
.+.+++.|+++|+||+.+... .+.++.+.|++|.|+++|.+++..++..|+++|.||+.+. +++
T Consensus 288 L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~ 365 (457)
T 1xm9_A 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLH 365 (457)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHH
Confidence 124556678899999876432 1334446899999999999999999999999999999864 445
Q ss_pred HHHHHcCChHHHHHhhhcCC------HHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCC-HHHHHHHHH
Q 021317 212 QLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDG-ADKAAETAK 281 (314)
Q Consensus 212 ~~i~~~g~v~~Lv~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~-~~~~~~~A~ 281 (314)
..+ ..|+++.|++++.+++ +++...++++|.++..+..+ .+.+.|++++++..+. .+ +++++++|.
T Consensus 366 ~~i-~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~---~~~~~~i~~~A~ 441 (457)
T 1xm9_A 366 RVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR---SSASPKAAEAAR 441 (457)
T ss_dssp HHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHH-HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHc---CCCcHHHHHHHH
Confidence 544 4579999999998864 36788899999999765543 4567899999987665 44 689999999
Q ss_pred HHHHHHHHH
Q 021317 282 RLLQDMVQR 290 (314)
Q Consensus 282 ~~L~~l~~~ 290 (314)
.+|.++-.+
T Consensus 442 ~~L~~~~~~ 450 (457)
T 1xm9_A 442 LLLSDMWSS 450 (457)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHHcc
Confidence 999987643
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.4e-28 Score=235.42 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=240.3
Q ss_pred eeccc-cCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMET-YFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~-~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
|.+|+ ++++.+|..|+++|. ++..+++++..+++.|++|.|+.+|.++++++++.|+++|+||+.+. +++..+.+.|
T Consensus 125 v~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g 204 (529)
T 3tpo_A 125 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHG 204 (529)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcC
Confidence 44554 566999999999999 77788888899999999999999999999999999999999999864 7788999999
Q ss_pred cHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317 91 AAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 91 ~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 164 (314)
++++|+.+|..++ ......++++|.|++.+......+.. .|++|.|+.++.++++ +++..++++|.+++.+.
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGP 282 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhhh
Confidence 9999999998653 45788999999999987766555544 7899999999988654 78889999999999887
Q ss_pred hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 165 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 165 ~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
+.+..++.+.|+++.|+.+|.+.+..++..|+.+|+|++.+++ ..+..+.+.|+++.|+.++.++++.+++.|+|+|.|
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6665554489999999999999999999999999999998764 778889999999999999999999999999999999
Q ss_pred hhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021317 245 LRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ 300 (314)
Q Consensus 245 l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~ 300 (314)
++.+... .+...|+++.++..+. +++.+.++.|..+|.++...........++
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~ 417 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKAAAWAITNYTSGGTVEQIVYLV 417 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9987743 3556889998887776 566899999999999999764444444444
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.9e-29 Score=216.22 Aligned_cols=233 Identities=21% Similarity=0.248 Sum_probs=213.7
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~ 91 (314)
+.++.++++++|..|+++|. ++..+++++..+.+.|+++.|+++|.+++++++..++.+|.+++.+ ++++..+.+.|+
T Consensus 8 ~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 87 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 56788899999999999999 7777778999999999999999999999999999999999999998 688999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~ 169 (314)
++.|+.+|.++++.++..|+++|.||+ .+++++..+.+.|+++.|++++.++++ .++..++++|+||+.+.+ .+..
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999 677888999999999999999998654 889999999999998654 4566
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+. +.|+++.|+.++.++++.++..|+++|.+++..++ +.++.+.+.|+++.|+++++++++.+++.|+++|.+++.+.
T Consensus 166 ~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 166 IV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 66 79999999999999999999999999999998654 77888999999999999999999999999999999999766
Q ss_pred c
Q 021317 250 Q 250 (314)
Q Consensus 250 ~ 250 (314)
.
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 4
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.2e-29 Score=249.46 Aligned_cols=273 Identities=17% Similarity=0.132 Sum_probs=230.9
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCc------------------------------hhH---HHHHhcCCcHHHHHHhcC
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKT------------------------------RNK---VKIATAGAIPPLVELLKF 60 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~------------------------------~~~---~~l~~~g~v~~Lv~lL~~ 60 (314)
|.+++++++.++..|+++|.+...+. .++ ..+++.|++|.|+.+|++
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 67788899999999999999544432 123 677899999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh---hcCCcHHHH
Q 021317 61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL---DATAVPPLI 137 (314)
Q Consensus 61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~Lv 137 (314)
+++.+++.|+++|.||+.+++++..+.+.|++|+|+.+|.++++..+..|+++|.||+.+.+....+. ..|++++|+
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv 586 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999996544333221 247999999
Q ss_pred HHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 021317 138 NLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 216 (314)
Q Consensus 138 ~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~ 216 (314)
.+|.++.. ......|+.+|.||+.. ++++..++ +.|+++.|+.+|.++++.+++.|+++|+||+.++ +.+..+.+
T Consensus 587 ~LL~~~~~-~l~~~eAl~AL~NLa~~~d~~~~~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~ 662 (810)
T 3now_A 587 NLLQQDCT-ALENFESLMALTNLASMNESVRQRII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEG 662 (810)
T ss_dssp HTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHS
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHh
Confidence 99986432 23345799999999988 56788888 6899999999999999999999999999999864 56777776
Q ss_pred -cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc---hhhcc-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 217 -EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---EKRLS-SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 217 -~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~-~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.|+++.|+.++.+.+..+|+.|+|+|.+++.+.+ ..++. .|+++.++..+. +++++.++.|.++|.|+...+
T Consensus 663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA---NPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999999998432 24555 789998887665 567999999999999999765
Q ss_pred HH
Q 021317 292 ME 293 (314)
Q Consensus 292 ~~ 293 (314)
.+
T Consensus 740 ~e 741 (810)
T 3now_A 740 EE 741 (810)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2.3e-29 Score=239.83 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=233.8
Q ss_pred eeccccCCHHHHHHHHHHhH-hhc-cCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQL-SKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAA-APNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~-~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~-~~~~~~i~~~ 89 (314)
|.++.|+|++.|..|+.+++ +++ +.......+++.|+||+|+++|++ ++++++..|+++|.||+.. ++++..+++.
T Consensus 63 v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~ 142 (510)
T 3ul1_B 63 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 142 (510)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 57889999999999999998 443 333446788999999999999974 4689999999999999875 5778889999
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCChh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSSEE 165 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~ 165 (314)
|++|.|+++|.++++.+++.|+++|+||+.+ ++.+..+.+.|++++|+.++...+.. ..+...+++++.|++.+..
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 222 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999965 56788899999999999999875422 2466789999999999876
Q ss_pred hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 166 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 166 ~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
....+....|++|.|+.++.++++.++..|+++|.+|+..+. +..+.+.+.|+++.|++++.+.++.++..|+++|.++
T Consensus 223 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh-hhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 665554357899999999999999999999999999998764 5667788899999999999999999999999999999
Q ss_pred hcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 246 RDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 246 ~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+.+... ..+..|+++.++..|. +.++..++.|.++|.++...+.+
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~v~~~A~~aL~nl~a~~~~ 349 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQD 349 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTT---CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhc---CCCHHHHHHHHHHHHHHHcCcHH
Confidence 876643 3556788887765554 45688999999999999875544
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=2.1e-28 Score=234.16 Aligned_cols=276 Identities=16% Similarity=0.145 Sum_probs=235.6
Q ss_pred eeccccCCHHHHHHHHHHhH-hh-ccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCC-CChhHHhhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQ-LSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA-PNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~-~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~ 89 (314)
+..+.++|++.|..|+.++. ++ .+.......+++.|++|.|+++|. +++++++..|+++|.|++..+ +++..+++.
T Consensus 82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~ 161 (529)
T 3tpo_A 82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 161 (529)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 56788999999999999998 44 444455678899999999999996 456899999999999999865 567788999
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCc---hHHHHHHHHHHHHhcCChh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKY---SKFAEKATALLEILSSSEE 165 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~ 165 (314)
|++|.|+.+|.++++.+++.|+++|+||+. +++++..+++.|++++|+.+|..++.. ..+...+++++++++.+..
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999996 467889999999999999999875321 2466789999999999876
Q ss_pred hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 166 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 166 ~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
....+....|++|.|+.++.++++.++..|+++|.+++.... +..+.+.+.|+++.|++++.+.++.++..|+++|.++
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-hhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 655554357899999999999999999999999999998764 6677788899999999999999999999999999999
Q ss_pred hcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 246 RDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 246 ~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+.+... .....|+++.++..|. +..+..++.|.++|.++...+.+
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHH
Confidence 876643 4567889998876665 45688999999999999976544
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=1.3e-27 Score=228.42 Aligned_cols=270 Identities=18% Similarity=0.152 Sum_probs=237.5
Q ss_pred eeccccCC-HHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMETYFE-GYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~~~~-~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
+.+|.+++ +.+|..|+++|. ++..+++++..+++.|++|.|+.+|.+++++++..|+++|++|+.+. .++..+.+.|
T Consensus 123 v~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g 202 (528)
T 4b8j_A 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANG 202 (528)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCC
Confidence 56777776 999999999999 77777999999999999999999999999999999999999999874 5688888999
Q ss_pred cHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh-
Q 021317 91 AAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI- 168 (314)
Q Consensus 91 ~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~- 168 (314)
++++|+.+| .+.++.++..++++|.+|+...+........|+++.|+.++.+.+. .++..++++|.+|+...+.+.
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~aL~~l~~~~~~~~~ 280 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE--EVLTDACWALSYLSDGTNDKIQ 280 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHTSSCHHHHH
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999 6779999999999999999876666666678999999999988643 888999999999998876654
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRD 247 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~~~A~~~L~~l~~ 247 (314)
.++ +.|+++.|+.+|.++++.++..|+++|.||+..++ ..++.+.+.|+++.|+.++.++ ++.++..|+++|.+++.
T Consensus 281 ~~~-~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 281 AVI-EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHH-HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 455 78999999999999999999999999999998764 6778888999999999999998 99999999999999997
Q ss_pred CCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 248 TPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 248 ~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+... .....++++.++..|. +++++.++.|..+|.++...
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQ---TAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHcC
Confidence 6543 3456788898887776 34688999999999999976
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=4.5e-28 Score=231.19 Aligned_cols=285 Identities=16% Similarity=0.142 Sum_probs=222.3
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhcc-CchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhc
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLS-KTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS 89 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~-~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~ 89 (314)
+|.+|.++++.+|+.|+++|. ++.. +++||..+++.|+||+|+.+|.+ ++.++++.++.+|+||+.++++|..|++
T Consensus 95 LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~- 173 (584)
T 3l6x_A 95 LVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD- 173 (584)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-
Confidence 368899999999999999999 5553 58999999999999999999986 5788999999999999999999999995
Q ss_pred CcHHHHHHHhc------------------cCCHHHHHHHHHHHHHhcCCC-CCchhhhhc-CCcHHHHHHhhcc----CC
Q 021317 90 GAAPLLVQILH------------------SGSVQGRVDAVTALHYLSTCK-ENSSPILDA-TAVPPLINLLKDC----KK 145 (314)
Q Consensus 90 g~l~~Lv~lL~------------------~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~-g~i~~Lv~lL~~~----~~ 145 (314)
+++|+|++++. ..++.++.+|+++|+||+.+. +++..+++. |+++.|+.++++. ..
T Consensus 174 ~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~ 253 (584)
T 3l6x_A 174 HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253 (584)
T ss_dssp HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc
Confidence 67999999872 225799999999999999765 458888874 5566888877531 11
Q ss_pred --------------------------------------------------------------------chHHHHHHHHHH
Q 021317 146 --------------------------------------------------------------------YSKFAEKATALL 157 (314)
Q Consensus 146 --------------------------------------------------------------------~~~~~~~a~~~L 157 (314)
...+++.|+++|
T Consensus 254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL 333 (584)
T 3l6x_A 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI 333 (584)
T ss_dssp SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 123445566666
Q ss_pred HHhcCCh----hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC---
Q 021317 158 EILSSSE----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--- 230 (314)
Q Consensus 158 ~~L~~~~----~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--- 230 (314)
+||+.+. ..-+.++.+.|+++.|+.+|.+++..+++.|+++|+||+.+.. ++..| +.|+++.|++++.++
T Consensus 334 ~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I-~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELI-GKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHH-HHHHHHHHHHTSSSSSCS
T ss_pred HHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHH-HhCCHHHHHHHhcCCccc
Confidence 6665542 1112234467899999999999999999999999999998764 46555 779999999999876
Q ss_pred -----CHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021317 231 -----TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQR 302 (314)
Q Consensus 231 -----~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~ 302 (314)
+..++..|+++|.|++....+ .+.+.|+++.++..+.... ..+++++.|..+|.+|..+ ...+...++
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~vL~nl~~~---~elr~~~kk 486 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAALVLQTIWGY---KELRKPLEK 486 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHHHHHHHHTS---HHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHHHHHHHHcC---HHHHHHHHH
Confidence 467889999999999765532 4567899999987776221 2589999999999999974 333333444
Q ss_pred hhh
Q 021317 303 AAS 305 (314)
Q Consensus 303 ~~~ 305 (314)
.++
T Consensus 487 ~G~ 489 (584)
T 3l6x_A 487 EGW 489 (584)
T ss_dssp TTC
T ss_pred cCC
Confidence 444
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.4e-27 Score=205.76 Aligned_cols=236 Identities=21% Similarity=0.288 Sum_probs=211.5
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSP 126 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 126 (314)
|++|.|+++|.+++++++..|+.+|.+++..+ +++..+.+.|+++.|+++|.++++.++..++++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67899999999999999999999999999876 4888999999999999999999999999999999999976 788999
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc-CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
+.+.|+++.|+.++++++ ..++..++++|.+|+ .+++.+..+. +.|+++.|+.+++++++.++..|+++|++|+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999864 488999999999999 5577888888 699999999999999999999999999999987
Q ss_pred CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317 206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR 282 (314)
Q Consensus 206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~ 282 (314)
++ +.++.+.+.|+++.|++++.++++.++..|+++|.+++.+.+. .....|+++.++..+. +++++.++.|..
T Consensus 159 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~ 234 (252)
T 4hxt_A 159 PD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT---STDSEVQKEAQR 234 (252)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHH
T ss_pred CH-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC---CCcHHHHHHHHH
Confidence 64 6678889999999999999999999999999999999986543 3556788888876664 556899999999
Q ss_pred HHHHHHHHH
Q 021317 283 LLQDMVQRS 291 (314)
Q Consensus 283 ~L~~l~~~s 291 (314)
+|.++....
T Consensus 235 ~L~~l~~~~ 243 (252)
T 4hxt_A 235 ALENIKSGG 243 (252)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999998654
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=4.8e-27 Score=224.39 Aligned_cols=273 Identities=15% Similarity=0.119 Sum_probs=236.5
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcCCC-HHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAA-APNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~La~~-~~~~~~i~~~ 89 (314)
+.+|.++++..|..|+++|. +++... .+...+++.|++|.|+++|.+++ +.++..|+++|.+++.. ++++..+.+.
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 159 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH 159 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 56788999999999999998 655544 77888999999999999999886 99999999999999996 5778888999
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhh
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI 168 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 168 (314)
|++|.|+.+|.++++.++..|+++|.||+.+ +.++..+.+.|++++|+.++..+. +..++..++++|++|+...+...
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999955 567888889999999999995432 34888999999999999865555
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
... ..|+++.|+.++.++++.++..|+++|.+|+...+ ...+.+.+.|+++.|+.++.+.++.++..|+++|.+++.+
T Consensus 239 ~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 316 (528)
T 4b8j_A 239 FEQ-TRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG 316 (528)
T ss_dssp HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC
Confidence 555 48999999999999999999999999999998763 5567788899999999999999999999999999999986
Q ss_pred Cch---hhcchhhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHH
Q 021317 249 PQE---KRLSSSVLEKIVYDIAARVDG-ADKAAETAKRLLQDMVQRSM 292 (314)
Q Consensus 249 ~~~---~~~~~~~~~~lv~~l~~~~~~-~~~~~~~A~~~L~~l~~~s~ 292 (314)
... ..+..|+++.++..|. ++ ++..++.|..+|.++...+.
T Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~A~~~L~nl~~~~~ 361 (528)
T 4b8j_A 317 DDAQTQCIIDHQALPCLLSLLT---QNLKKSIKKEACWTISNITAGNK 361 (528)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHc---CCCcHHHHHHHHHHHHHHHCCCH
Confidence 643 4556888998887776 33 68899999999999996443
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1.4e-26 Score=221.44 Aligned_cols=271 Identities=15% Similarity=0.097 Sum_probs=237.3
Q ss_pred eeccccC-CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMETYF-EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~~~-~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
+.+|.++ ++.+|..|+++|. ++..+++++..+++.|+++.|+.+|.+++++++..|+++|++|+.+. .++..+...|
T Consensus 136 v~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 215 (530)
T 1wa5_B 136 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCN 215 (530)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcC
Confidence 5677786 8999999999999 77777888899999999999999999999999999999999999874 6788888999
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhh
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRI 168 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~ 168 (314)
++++|+.+|.++++.++..++++|.+|+... +........|+++.|+.++.+++ ..++..++++|.+|+... +...
T Consensus 216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999765 56666667899999999998864 488899999999999874 4566
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
.++ +.|+++.|+.+|.+.+..++..|+++|.+++..++ ...+.+.+.|+++.|+.++.++++.+++.|+++|.+++.+
T Consensus 294 ~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 294 AVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 666 68999999999999999999999999999998764 6677888899999999999999999999999999999976
Q ss_pred Cch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 249 PQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 249 ~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
... ..+..++++.++..|. +++++.+..|..+|.++....
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLE---VAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcC
Confidence 543 3445788888887775 345889999999999999753
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.8e-27 Score=204.50 Aligned_cols=234 Identities=21% Similarity=0.253 Sum_probs=206.7
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhc-cCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLS-AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSP 126 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~ 126 (314)
...+.++..|.+++++++..|+.+|.++. .+++++..+.+.|++|.|+++|.++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45789999999999999999999997744 456778889999999999999999999999999999999996 6789999
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
+.+.|+++.|+.+|++++ ..++..|+++|.||+.+.+.+ ..+. +.|+++.|+.+|.++++.+++.|+++|.+|+..
T Consensus 92 i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCchHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999864 488999999999999998888 6677 799999999999999999999999999999987
Q ss_pred CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 021317 206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR 282 (314)
Q Consensus 206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~ 282 (314)
++ +.++.+.+.|+++.|++++.++++.+++.|+++|.+++.+.+. ...+.|+++.++..+. +++++.++.|..
T Consensus 169 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~A~~ 244 (252)
T 4db8_A 169 GN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS---HENEKIQKEAQE 244 (252)
T ss_dssp CH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT---CSSSHHHHTHHH
T ss_pred Ch-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC---CCCHHHHHHHHH
Confidence 64 6788888999999999999999999999999999999976543 3456788887765554 556799999999
Q ss_pred HHHHHHH
Q 021317 283 LLQDMVQ 289 (314)
Q Consensus 283 ~L~~l~~ 289 (314)
+|.++.+
T Consensus 245 ~L~~l~~ 251 (252)
T 4db8_A 245 ALEKLQS 251 (252)
T ss_dssp HHHTTC-
T ss_pred HHHHHhc
Confidence 9998864
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=1.4e-25 Score=209.24 Aligned_cols=269 Identities=16% Similarity=0.111 Sum_probs=231.7
Q ss_pred eeccccC-CHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcC
Q 021317 14 VFMETYF-EGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~~~-~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g 90 (314)
+.+++++ ++.+|..|+++|. ++..++++...+.+.|++|.|+++|+++++++++.|+++|.+++.+. +++..+.+.|
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 149 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCN 149 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence 4567777 8999999999999 66667788888889999999999999999999999999999999875 5778888999
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hh
Q 021317 91 AAPLLVQILHS-GSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EG 166 (314)
Q Consensus 91 ~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~ 166 (314)
+++.|++++.+ .++.++..++++|.+|+... ..+..++ .|+++.|+.++.+++ ..++..++++|.+++.+. +.
T Consensus 150 ~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 150 ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSD--TDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCC--HHHHHHHHHHHHHHTSSSHHH
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCC--HHHHHHHHHHHHHHHCCCcHH
Confidence 99999999996 68999999999999999654 3344444 789999999998764 378899999999999874 55
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+..+. ..|+++.|+.++.+.++.++..|+++|.+++...+ ..++.+.+.|+++.|++++.+.++.+++.|+++|.+++
T Consensus 227 ~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 227 IQAVI-DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp HHHHH-HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHH-HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 66666 68999999999999999999999999999998864 56677888999999999999999999999999999999
Q ss_pred cCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 247 DTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 247 ~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+... .....++++.++..+. +++++.+..|..+|.++...
T Consensus 305 ~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 305 AGNRAQIQTVIDANIFPALISILQ---TAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHcC
Confidence 76533 3445788888877776 44688999999999999976
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=202.37 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=171.8
Q ss_pred CCcHHHHHHhcCCCH--HHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCc
Q 021317 49 GAIPPLVELLKFQNG--TLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENS 124 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~ 124 (314)
-.+|.|+++|.++++ +++..|+.+|.+|+. +++++..|.+.|+||+|+++|+++++++++.|+++|+||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 357999999999887 899999999999997 56789999999999999999999999999999999999996 57899
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh---c-------------CC
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE---D-------------GS 188 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~---~-------------~~ 188 (314)
..|++.|+||+|+++|.++. +..+++.++++||||+..+++|..++ + ++++.|+.++. + .+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999998532 23788999999999999999999998 4 46999988662 1 24
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhcC------CHHHHHHHHHHHHHhhcC
Q 021317 189 LVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG------TFEAQERARTLLDLLRDT 248 (314)
Q Consensus 189 ~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~~------~~~~~~~A~~~L~~l~~~ 248 (314)
..++++|.++|+||+..++ ++|+.|++ .|+|+.|+.+++.+ +...+|+|+.+|+||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGA-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCH-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998763 78999998 56789999998863 568999999999999864
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=2.1e-25 Score=213.28 Aligned_cols=273 Identities=14% Similarity=0.133 Sum_probs=235.2
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~ 91 (314)
+.++.++++.+++.|+++|. ++..++.++..+.+.|+++.|+.++.+++++++..|+++|.+|+.+. .........|+
T Consensus 179 v~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 258 (530)
T 1wa5_B 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258 (530)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence 56778899999999999999 66667889999999999999999999999999999999999999875 55566667899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~ 169 (314)
+|.|+.+|.++++.++..++++|.+|+... +....+.+.|+++.|+.+|.+.+ ..++..|+.+|.+++... .....
T Consensus 259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~ 336 (530)
T 1wa5_B 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--TLVQTPALRAVGNIVTGNDLQTQV 336 (530)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC--hhhHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999654 56677888999999999998754 488899999999999774 44555
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+. +.|+++.|+.+|.+++..++..|+++|.+++..++ +..+.+++.|+++.|+.++.++++.++..|+++|.+++.+.
T Consensus 337 ~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 337 VI-NAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 66 68999999999999999999999999999998764 56777889999999999999999999999999999998643
Q ss_pred -c--h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 250 -Q--E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 250 -~--~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+ + .....|+++.++..+. +.+++.++.|..+|.++......
T Consensus 415 ~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 415 LQRPDIIRYLVSQGCIKPLCDLLE---IADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp TTCTHHHHHHHHTTCHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhhhh
Confidence 2 1 3445778888876665 44688999999999999976544
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=3.5e-25 Score=206.54 Aligned_cols=272 Identities=15% Similarity=0.139 Sum_probs=232.0
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC--CChhHHhhc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA--PNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--~~~~~i~~~ 89 (314)
+.+++++++.+|+.|+++|. ++..+++++..+.+.|+++.|+.++.+ ++++++..++++|.+++... ..+..+. .
T Consensus 113 ~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 191 (450)
T 2jdq_A 113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-S 191 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-G
T ss_pred HHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-H
Confidence 56788899999999999999 666777899999999999999999985 68999999999999999764 3333333 8
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR- 167 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~- 167 (314)
+++|.|++++.++++.++..++++|.+|+... +++..+.+.|+++.|+.++.+.+ ..++..++.+|.+++.+.+..
T Consensus 192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND--YKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--hhHHHHHHHHHHHHhhCChHHH
Confidence 99999999999999999999999999999754 56677788999999999998754 488999999999999886554
Q ss_pred hHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 168 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 168 ~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
..+. +.|+++.|+.++.++++.++..|+++|.+++.+++ +..+.+.+.|+++.|++++.++++.++..|+++|.+++.
T Consensus 270 ~~~~-~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 270 QVIL-NCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHH-TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 4455 68999999999999999999999999999998764 667788889999999999999999999999999999986
Q ss_pred C-Cch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 248 T-PQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 248 ~-~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+ .++ .....++++.++..+. +++++.++.|..+|.++......
T Consensus 348 ~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 348 GGSAEQIKYLVELGCIKPLCDLLT---VMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HCCHHHHHHHHHHTCHHHHHHGGG---SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhchh
Confidence 4 322 2445788888877665 44688999999999999976543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=5.1e-26 Score=216.61 Aligned_cols=270 Identities=17% Similarity=0.145 Sum_probs=232.8
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
+.+++++++.+|+.|+.+|...+.+++++..+.. .|+++.|+++|.++ +++++..++.+|.+|+.+++++..+.+.|+
T Consensus 23 v~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~ 102 (529)
T 1jdh_A 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 102 (529)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCC
Confidence 5678899999999999999966666778877775 48999999999754 899999999999999999889999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~ 169 (314)
+|.|+++|.++++.++..++++|.||+.+ ++.+..+.+.|+++.|++++.+++ .++...+..+|.+++.. ++++..
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999966 556777888999999999999864 37788888999999975 678888
Q ss_pred HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+. +.|+++.|+.++++++ ...++.++.+|++++... +++..+.+.|+++.|++++.++++.+++.++++|.+|+.+
T Consensus 181 i~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 181 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HH-HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HH-HCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 88 6899999999998765 566778899999999765 5699999999999999999999999999999999999987
Q ss_pred CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
........++++.++..+. +.+++.++.|..+|.++...+
T Consensus 258 ~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 258 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTC
T ss_pred ChhhHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCC
Confidence 6543334577777766654 456889999999999998654
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=5.1e-26 Score=191.30 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=178.0
Q ss_pred hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCc
Q 021317 47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENS 124 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~ 124 (314)
..|+.+.|+.+|.+++++++..|+++|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.||+ .+++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 46888999999999999999999999999996 4577888999999999999999999999999999999999 566788
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC 203 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~ 203 (314)
..+++.|+++.|+.+|++++ ..++..|+++|+|++.+ ++.+..+. +.|+++.|+.++.+++..+++.|+++|.|++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999875 48899999999999976 45556676 7999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 204 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 204 ~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
..++ +.+..+.+.|+++.|++++.++++.+++.|.++|.+|+.+
T Consensus 167 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 167 SGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp TSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 8764 6788899999999999999999999999999999999763
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=199.75 Aligned_cols=191 Identities=21% Similarity=0.171 Sum_probs=169.0
Q ss_pred eeccccCCH--HHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhhc
Q 021317 14 VFMETYFEG--YARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAAS 89 (314)
Q Consensus 14 v~~l~~~~~--~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~ 89 (314)
|.+|+++++ +.|..|+.++. ++.+++++|..+++.|+||+|+++|+++++++++.|+++|.||+. ++++|..|.+.
T Consensus 14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~ 93 (233)
T 3tt9_A 14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAEL 93 (233)
T ss_dssp HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 678899988 88999999999 777899999999999999999999999999999999999999998 46899999999
Q ss_pred CcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh---ccC-----------CchHHHHHHH
Q 021317 90 GAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCK-----------KYSKFAEKAT 154 (314)
Q Consensus 90 g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~---~~~-----------~~~~~~~~a~ 154 (314)
|+||+|+++|+ +++.+++++++.+|+||+..+++|..|++. ++++|++++. ++. .+..++++|+
T Consensus 94 GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~ 172 (233)
T 3tt9_A 94 NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT 172 (233)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHH
Confidence 99999999998 479999999999999999999999999875 6999998763 111 2458899999
Q ss_pred HHHHHhcCC-hhhhhHHHhccCCHHHHHHHhhcC------CHHHHHHHHHHHHHhhcc
Q 021317 155 ALLEILSSS-EEGRIAITNSDGGILTLVETVEDG------SLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 155 ~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~~~------~~~~~~~A~~~L~~L~~~ 205 (314)
++|.||+.. +++|+.+....|.|+.|+.+++.+ +.+.+|+|+.+|+||+..
T Consensus 173 ~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999885 689999985567899999999752 467899999999999964
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=219.94 Aligned_cols=271 Identities=17% Similarity=0.144 Sum_probs=233.5
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
+.+|+++++.+|+.|+.+|...+.++.++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.+++++..+.+.|+
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~ 99 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG 99 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCC
Confidence 5778899999999999999955556677777775 48999999999865 899999999999999999889999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC-ChhhhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~ 169 (314)
++.|+++|.++++.++..|+++|.||+.. ++.+..+.+.|+++.|+++|++++. ++...++.+|.+|+. +++++..
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--HHHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999999999999999965 4566677789999999999998743 777778889999996 6788888
Q ss_pred HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+. +.|+++.|+.++++.+ ..+++.++.+|++|+... +++..+++.|+++.|++++.++++.+++.++++|.+|+.+
T Consensus 178 i~-~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 178 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HH-HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT--THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HH-HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88 6899999999998765 677899999999999765 5699999999999999999999999999999999999986
Q ss_pred CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 021317 249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 292 (314)
Q Consensus 249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~ 292 (314)
........++++.++..+. +.+++.++.|..+|.++...+.
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~---~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCH
T ss_pred chhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCH
Confidence 6443334567777766654 4568899999999999986543
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=4.9e-26 Score=216.74 Aligned_cols=271 Identities=19% Similarity=0.177 Sum_probs=233.4
Q ss_pred eecccc-CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317 14 VFMETY-FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~-~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~ 91 (314)
+.+|.+ ++++.+..++.+|...+.+++++..+.+.|++|.|+++|.+++++++..|+.+|.+|+.++ ..+..+.+.|+
T Consensus 65 v~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 144 (529)
T 1jdh_A 65 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCC
Confidence 344554 4899999999999966667789999999999999999999999999999999999999974 56777889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
+|.|+++|.+++++++..++.+|.+++. +++++..+.+.|+++.|+.++++++. ......+..+|++|+.+++++..+
T Consensus 145 i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999999999996 56788999999999999999998754 467788999999999999999999
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
+ +.|+++.|+.++.++++.+++.++++|.+|+...+. .. ...|+++.|++++.++++.+++.|+++|.+|+.+.+
T Consensus 224 ~-~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 224 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp H-HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred H-HCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 8 699999999999999999999999999999987532 11 124789999999999999999999999999998763
Q ss_pred h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 251 E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 251 ~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
+ ...+.|+++.++..+....+ .+..++.|..+|+++...+
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~-~~~v~~~a~~~L~nl~~~~ 341 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRH 341 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHcCChHHHHHHHHccCC-HHHHHHHHHHHHHHHHcCC
Confidence 2 45567889988887763222 3688999999999998653
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=7.7e-25 Score=214.20 Aligned_cols=272 Identities=19% Similarity=0.165 Sum_probs=227.2
Q ss_pred eecccc-CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317 14 VFMETY-FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~-~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~ 91 (314)
+..|.+ ++++++..|+.+|..++.+++++..+.+.|+++.|+++|.++++.++..|+.+|.||+..+ ..+..+.+.|+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~ 141 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCC
Confidence 445555 4899999999999966666789999999999999999999999999999999999999874 56777889999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
+|.|+++|.++++.++..++.+|.+|+. +++++..+.+.|+++.|+.+++++.. ..++..++.+|+||+.+++++..+
T Consensus 142 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~~~~~l 220 (644)
T 2z6h_A 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI 220 (644)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999999999995 77899999999999999999998653 477788999999999999999988
Q ss_pred HhccCCHHHHHHHh---------------------------------------hcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317 171 TNSDGGILTLVETV---------------------------------------EDGSLVSTQHAVGALLSLCQSCRDKYR 211 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll---------------------------------------~~~~~~~~~~A~~~L~~L~~~~~~~~~ 211 (314)
+ +.|+++.|+.++ .++++.+++.|+++|.+|+..++ +.+
T Consensus 221 ~-~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~-~~~ 298 (644)
T 2z6h_A 221 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 298 (644)
T ss_dssp H-HTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred H-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 8 677777666554 44567778888888888887653 678
Q ss_pred HHHHHcCChHHHHHhhhcC-C-HHHHHHHHHHHHHhhcCCch------hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 021317 212 QLILKEGAIPGLLRLTVEG-T-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRL 283 (314)
Q Consensus 212 ~~i~~~g~v~~Lv~ll~~~-~-~~~~~~A~~~L~~l~~~~~~------~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~ 283 (314)
+.+.+.|+++.|++++.+. + +.+++.|+++|.+|+.+... .++..++++.++..|. ...++..++.|..+
T Consensus 299 ~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~--~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH--PPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhC--ccCchHHHHHHHHH
Confidence 8899999999999998863 3 79999999999999865321 2445678887776665 22236889999999
Q ss_pred HHHHHHH
Q 021317 284 LQDMVQR 290 (314)
Q Consensus 284 L~~l~~~ 290 (314)
|.++...
T Consensus 377 L~nLa~~ 383 (644)
T 2z6h_A 377 IRNLALC 383 (644)
T ss_dssp HHHHTTS
T ss_pred HHHHccC
Confidence 9999864
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=8e-25 Score=183.94 Aligned_cols=191 Identities=24% Similarity=0.231 Sum_probs=173.6
Q ss_pred cceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCCChhHHhh
Q 021317 11 GVEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAA 88 (314)
Q Consensus 11 ~~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~ 88 (314)
...+.+++++++.+|..|+++|. ++..+++++..+.+.|++|.|+++|.+++++++..|+++|.|++. +++++..+.+
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45568899999999999999999 666889999999999999999999999999999999999999996 4577888999
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhh
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG 166 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~ 166 (314)
.|+++.|+++|+++++.++..|+++|.||+. +++.+..+.+.|+++.|++++++++ ..++..|+++|+|++.+ ++.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999999999999995 4556677889999999999999864 38899999999999988 667
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
+..+. +.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 173 ~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 77777 79999999999999999999999999999985
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=3.1e-24 Score=213.94 Aligned_cols=270 Identities=17% Similarity=0.146 Sum_probs=231.0
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
+.+|.++++.+|+.|+.+|...+.++.++..+.+ .|+++.|+++|.++ +++++..|+.+|.+|+.+++++..+.+.|+
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 4567788999999999999966666778887775 48999999999755 899999999999999998888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIA 169 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~ 169 (314)
++.|+++|.++++.++..|+++|.||+.. ++.+..+.+.|+++.|+.+|.+.+ .++...++.+|.+++.. .+++..
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~--~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999999999999999965 456666778999999999999854 37788899999999964 788888
Q ss_pred HHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 170 ITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
++ +.|+++.|+.++++++ ...++.++.+|++|+... +.+..+++.|+++.|+.++.++++.+++.|+++|.+|+..
T Consensus 314 i~-~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 314 IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HH-TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 88 6899999999998765 456678999999999765 5689999999999999999999999999999999999987
Q ss_pred CchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 249 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 249 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
........++++.++..|. +.+++.++.|..+|.++...+
T Consensus 391 ~~~~~~~~~~i~~Lv~lL~---~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 391 ATKQEGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp CTTCSCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSC
T ss_pred chhhhhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCC
Confidence 6543334667777766654 456889999999999998654
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=1.2e-23 Score=209.65 Aligned_cols=273 Identities=19% Similarity=0.167 Sum_probs=225.1
Q ss_pred eeccccC-CHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCc
Q 021317 14 VFMETYF-EGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~-~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~ 91 (314)
+..|.++ ++++++.|+.+|..++.+++++..+.+.|+++.|+++|+++++.++..|+.+|.||+... ..+..+.+.|+
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~ 277 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGG 277 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCC
Confidence 3455544 899999999999966667888999999999999999999999999999999999999975 55667778999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
++.|+++|.+++..++..++.+|.+|+. +++++..+++.|+++.|+.++++++. ....+.+..+|++|+.+.+++..+
T Consensus 278 v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i 356 (780)
T 2z6g_A 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAI 356 (780)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSTTHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHHHHHH
Confidence 9999999999999999999999999995 57889999999999999999998754 356678899999999988888887
Q ss_pred HhccCCHHHHHH---------------------------------------HhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317 171 TNSDGGILTLVE---------------------------------------TVEDGSLVSTQHAVGALLSLCQSCRDKYR 211 (314)
Q Consensus 171 ~~~~g~v~~Lv~---------------------------------------ll~~~~~~~~~~A~~~L~~L~~~~~~~~~ 211 (314)
+ +.|+++.|+. +|.+.+..+++.|+++|.+|+..++ +.+
T Consensus 357 ~-~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~ 434 (780)
T 2z6g_A 357 V-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 434 (780)
T ss_dssp H-HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHH
T ss_pred H-HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHH
Confidence 7 5666655554 4445567788889999999988763 678
Q ss_pred HHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhcCCch------hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 021317 212 QLILKEGAIPGLLRLTVE-GT-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRL 283 (314)
Q Consensus 212 ~~i~~~g~v~~Lv~ll~~-~~-~~~~~~A~~~L~~l~~~~~~------~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~ 283 (314)
..+.+.|+++.|++++.+ ++ +.+++.|+++|.+|+....+ .+...++++.++..|. ....+..++.|..+
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~--~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH--PPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc--CCChHHHHHHHHHH
Confidence 888999999999998876 33 49999999999999865422 3445778887776665 22335889999999
Q ss_pred HHHHHHHH
Q 021317 284 LQDMVQRS 291 (314)
Q Consensus 284 L~~l~~~s 291 (314)
|.++...+
T Consensus 513 L~nLa~~~ 520 (780)
T 2z6g_A 513 IRNLALCP 520 (780)
T ss_dssp HHHHHSSH
T ss_pred HHHHhcCH
Confidence 99999643
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=5.3e-23 Score=181.86 Aligned_cols=221 Identities=17% Similarity=0.111 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH-HhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhh
Q 021317 64 TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK 141 (314)
Q Consensus 64 ~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~ 141 (314)
+-+..|+..|.++..+.++...+.+.|++|+|+. +|.++++.++..|+++|.|++.+ +..+..+++.|++++|+.+|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 5677888999999988889999999999999999 99999999999999999999965 567888999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCCh
Q 021317 142 DCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 220 (314)
Q Consensus 142 ~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v 220 (314)
++. ...++..|+++|+|++.+. +....+. +.|+++.|+.+|++++..++..|+++|.+|+..++ +.++.+++.|++
T Consensus 135 ~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i 211 (296)
T 1xqr_A 135 RDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV 211 (296)
T ss_dssp HCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHH
T ss_pred cCC-CHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCH
Confidence 742 3478999999999999874 5566777 68999999999999999999999999999998764 678999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchh--------hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 221 PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS--------VLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 221 ~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~--------~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
+.|+.++.+.++.+++.|+.+|.+|....+......+ .++.....+.. .+...+..++|..++.++-
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~-~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ-HEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987543221111 12222222221 1113566677877777654
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3.3e-22 Score=176.80 Aligned_cols=184 Identities=22% Similarity=0.159 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHH-HhcCCCHHHHHHHHHHHHHhccCC-CChhHHhhcCcHHHHHH
Q 021317 20 FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVE-LLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQ 97 (314)
Q Consensus 20 ~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~l~~Lv~ 97 (314)
.+.+.+..|+..|.....+.+|...+.+.|++|+|+. +|.+++++++..|+++|++++.++ .++..+.+.|++|+|++
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3456788888888866667789999999999999999 999999999999999999999864 67888999999999999
Q ss_pred Hhcc-CCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC-hhhhhHHHhcc
Q 021317 98 ILHS-GSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSD 174 (314)
Q Consensus 98 lL~~-~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~ 174 (314)
+|++ +++.++..|+++|.||+.+ ++....+.+.|+++.|+.+|++++ ..++..|+++|.+|+.+ ++.+..++ +.
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d--~~v~~~A~~aLs~L~~~~~~~~~~vv-~~ 208 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV--QKLKVKSAFLLQNLLVGHPEHKGTLC-SM 208 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHH-HT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCChHHHHHHH-Hc
Confidence 9996 4899999999999999965 456678888999999999999864 48899999999999876 56677777 79
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 175 GGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 175 g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
|+++.|+.+|.+++..+++.|+.+|.+|+...
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999875
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.1e-21 Score=184.56 Aligned_cols=272 Identities=12% Similarity=0.056 Sum_probs=215.8
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchhHHHHHh-cCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCC-----------
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIAT-AGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAP----------- 81 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~----------- 81 (314)
.++..++...++.|++.|..++.+++.|..+++ .|+++.|+.++++ ++.++.-.++.+|.||+...+
T Consensus 341 ~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~ 420 (778)
T 3opb_A 341 NAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXX 420 (778)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----
T ss_pred HHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhh
Confidence 455666666699999999977778899998886 5779999999985 677888899999999997422
Q ss_pred ----------------------------ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCc
Q 021317 82 ----------------------------NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAV 133 (314)
Q Consensus 82 ----------------------------~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i 133 (314)
++..+.+.|++|+|+.++.++++.++..++++|.||+.++++|..+++.|++
T Consensus 421 Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal 500 (778)
T 3opb_A 421 XXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAV 500 (778)
T ss_dssp --------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHH
T ss_pred hhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 2445668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCc-hHHHHHHHHHHHHhcCChhhhhHHHh--ccCCHHHHHHHhhc--CCH------------HHHHHHH
Q 021317 134 PPLINLLKDCKKY-SKFAEKATALLEILSSSEEGRIAITN--SDGGILTLVETVED--GSL------------VSTQHAV 196 (314)
Q Consensus 134 ~~Lv~lL~~~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~--~~g~v~~Lv~ll~~--~~~------------~~~~~A~ 196 (314)
++|+.++.++... ...+..|+.+|.++....+....+.. ..|+|+.|+.+|.. +.. .-+..|+
T Consensus 501 ~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL 580 (778)
T 3opb_A 501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEAL 580 (778)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHH
Confidence 9999999987542 13678999999998855444443321 14899999999983 211 1267999
Q ss_pred HHHHHhhccCc---HHHHHHHHHc-CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch---hhcchh------hhHHHH
Q 021317 197 GALLSLCQSCR---DKYRQLILKE-GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSS------VLEKIV 263 (314)
Q Consensus 197 ~~L~~L~~~~~---~~~~~~i~~~-g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~~------~~~~lv 263 (314)
.+|.||+..+. ++.|..+++. |+++.|..++.++++.+|++|++++.||+.++.. +....+ .++.+|
T Consensus 581 ~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV 660 (778)
T 3opb_A 581 LALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILV 660 (778)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHH
Confidence 99999998763 2568888885 9999999999999999999999999999987753 232211 244454
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 264 YDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 264 ~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
..+. .++++.++.|..+|.++..
T Consensus 661 ~Ll~---s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 661 KLLQ---LSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HGGG---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHHhcC
Confidence 4443 4568999999999999974
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-21 Score=188.57 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=196.8
Q ss_pred hHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHH---HHHHHHHHHHHh
Q 021317 41 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ---GRVDAVTALHYL 117 (314)
Q Consensus 41 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~---~~~~a~~~L~nL 117 (314)
++..+.+.|++|.|+.++.++++.+++.++++|.||+.++++|..+++.|++++|+.+|.+++.. .+..|+.+|.+|
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999988654 899999999999
Q ss_pred cCCCCCchhhhh---cCCcHHHHHHhhccCC-----------ch-HHHHHHHHHHHHhcCCh-----hhhhHHHhccCCH
Q 021317 118 STCKENSSPILD---ATAVPPLINLLKDCKK-----------YS-KFAEKATALLEILSSSE-----EGRIAITNSDGGI 177 (314)
Q Consensus 118 s~~~~~~~~i~~---~g~i~~Lv~lL~~~~~-----------~~-~~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~v 177 (314)
+.+.+....+.. .|++++|+.+|..+.. .. .-...|+.+|.||+..+ +.|..++.+.|++
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 966554443321 4899999999983211 11 12557999999999986 3478788334999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH-HHHHH------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 021317 178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR-QLILK------EGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TP 249 (314)
Q Consensus 178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~i~~------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~ 249 (314)
+.|..+|.+++..++..|+.+++||+.+. +.+ +.+.+ .+.++.|+.++..++..+|++|+++|.+++. ++
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999764 333 23432 2248899999999999999999999999964 43
Q ss_pred c--hhhcch-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 250 Q--EKRLSS-SVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 250 ~--~~~~~~-~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
. ...++. ++++.++..+..+ ..++..+.++..++.||+.
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 2 234443 6888787766633 2458899999999999995
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.52 E-value=1.4e-12 Score=123.92 Aligned_cols=266 Identities=13% Similarity=0.147 Sum_probs=203.2
Q ss_pred ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCC------------
Q 021317 18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPN------------ 82 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~------------ 82 (314)
++.-.+.|+.|+..|. ++. +++..+ ..++++.|+..|+.+ |.++...++.+|.++...++.
T Consensus 32 ~~tl~eDRR~Av~~Lk~~sk---~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 32 SSTLLDDRRNAVRALKSLSK---KYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HCCSHHHHHHHHHHHHHTTT---TTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred hccchhHHHHHHHHHHHHHH---HhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 3455788999999998 543 455554 457799999999754 788888899999886553211
Q ss_pred ------hhH-HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CC-Cchhhhh-cCCcHHHHHHhhccCCchHHHHH
Q 021317 83 ------KPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KE-NSSPILD-ATAVPPLINLLKDCKKYSKFAEK 152 (314)
Q Consensus 83 ------~~~-i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~ 152 (314)
... +.+.+.++.|+.+|++.+-.+|.+++.+|..|+.. ++ +++.|.. .++++.|+.+|.+..+ .++..
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--~iRne 185 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--VIRND 185 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--HHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--HHHHH
Confidence 112 23578999999999999999999999999999944 33 6788885 6999999999998643 88889
Q ss_pred HHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC----HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317 153 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 228 (314)
Q Consensus 153 a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 228 (314)
++.+|.+|+.++.+.++++.-.|+++.|+.++.... ..+.+.|+.+|.||...++ .++..+.+.|+++.|..++.
T Consensus 186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~-sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN-SNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCGGGGGGGGC
T ss_pred HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHhC
Confidence 999999999998777777656899999999997643 4788999999999999985 67999999999999999987
Q ss_pred cCCH------HHHHH---HHHHHHHhhcCCc---------hhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 229 EGTF------EAQER---ARTLLDLLRDTPQ---------EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 229 ~~~~------~~~~~---A~~~L~~l~~~~~---------~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+.+ ..-.+ +..+++.|..... ..+.+.|+++.++..+.. ..-....+..|..++..+.+.
T Consensus 265 ~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~-~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 265 VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA-TGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHTT
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhC
Confidence 5432 12223 5567777765422 134567888877766552 222477889999999988754
Q ss_pred H
Q 021317 291 S 291 (314)
Q Consensus 291 s 291 (314)
+
T Consensus 344 N 344 (651)
T 3grl_A 344 C 344 (651)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.48 E-value=1.9e-12 Score=122.89 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHhH-hhccCch-----------------hHHHHH-hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 021317 20 FEGYARRLNLMGPL-WQLSKTR-----------------NKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA 80 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~-----------------~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 80 (314)
.|.++.+.++..|. +...+++ +...+. +.+.++.|+.+|++++..+|..++..|..|+.+.
T Consensus 74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence 57888999999987 4443332 222333 5788999999999999999999999999998864
Q ss_pred --CChhHHh-hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccC--CchHHHHHHH
Q 021317 81 --PNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCK--KYSKFAEKAT 154 (314)
Q Consensus 81 --~~~~~i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~--~~~~~~~~a~ 154 (314)
..+..|. .++|++.|+.+|.++.+.+|..++..|.+|+.+..+.+.++. +|+++.|++++.... +...++..|+
T Consensus 154 ~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 154 GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 3678887 569999999999999999999999999999977666555555 799999999998632 2346778999
Q ss_pred HHHHHhcCCh-hhhhHHHhccCCHHHHHHHhhcCCHH------HHHH---HHHHHHHhhccCc-----HHHHHHHHHcCC
Q 021317 155 ALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSLV------STQH---AVGALLSLCQSCR-----DKYRQLILKEGA 219 (314)
Q Consensus 155 ~~L~~L~~~~-~~~~~i~~~~g~v~~Lv~ll~~~~~~------~~~~---A~~~L~~L~~~~~-----~~~~~~i~~~g~ 219 (314)
.++.||..++ .|+..+. +.|+++.|..+++.+... ...+ ++.++.-|+..+. ..++..+.+.|+
T Consensus 234 ~ll~nLLr~N~sNQ~~Fr-Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 234 ILLQNLLKNNNSNQNFFK-EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHTTCHHHHHHHH-HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhcCHHHHHHHH-HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 9999999885 4666666 899999999999754321 2233 6666666765421 257889999999
Q ss_pred hHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCch--hhcc-h-----hhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHH
Q 021317 220 IPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLS-S-----SVLEKIVYDIAAR--VDGADKAAETAKRLLQDM 287 (314)
Q Consensus 220 v~~Lv~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~-~-----~~~~~lv~~l~~~--~~~~~~~~~~A~~~L~~l 287 (314)
++.|++++... ...++..|..++..+.++++. ..+. . ...+.++..|... .....+.+..|..+++.+
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99999987765 578889999999998876642 1111 0 0112333322211 122477889999999999
Q ss_pred HHHHHHH
Q 021317 288 VQRSMEL 294 (314)
Q Consensus 288 ~~~s~~~ 294 (314)
...+.+.
T Consensus 393 ~~~N~~~ 399 (651)
T 3grl_A 393 LYKNQKG 399 (651)
T ss_dssp HTTCHHH
T ss_pred HhCCHHH
Confidence 9776543
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.46 E-value=5.6e-12 Score=105.36 Aligned_cols=189 Identities=19% Similarity=0.153 Sum_probs=153.3
Q ss_pred hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchh
Q 021317 47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP 126 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 126 (314)
..+.++.|+..|.++++.++..|+..|..+. ..++++.|+++|.++++.++..++.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567899999999999999999999998873 35789999999999999999999999998753
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
.+.++.|+.+|.+.++ .++..++.+|..+.. .+.++.|+.++.+.++.++..|+.+|..+...
T Consensus 80 ---~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 142 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDG--WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 142 (211)
T ss_dssp ---GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-
T ss_pred ---HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-
Confidence 3578999999987643 788889999987643 45789999999999999999999999998532
Q ss_pred cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 021317 207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQD 286 (314)
Q Consensus 207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~ 286 (314)
..++.|..++.+.++.++..|+.+|..+.. ..+++.+...+. +.++..+..|..+|.+
T Consensus 143 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 143 -----------RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAE---TGTGFARKVAVNYLET 200 (211)
T ss_dssp -----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHH---HCCHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHh---CCCHHHHHHHHHHHHh
Confidence 368889999999999999999999999843 345555554444 4568899999999998
Q ss_pred HHHHH
Q 021317 287 MVQRS 291 (314)
Q Consensus 287 l~~~s 291 (314)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 87543
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=3e-12 Score=107.07 Aligned_cols=182 Identities=23% Similarity=0.160 Sum_probs=149.5
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
+..|.++++.+|..|+.+|..... ...++.|+++|.++++.++..|+.+|..+. ..+.++
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~ 84 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------DERAVE 84 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------CHHHHH
Confidence 567888999999999998874322 367899999999999999999999999884 357899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
.|+++|.++++.++..++.+|.++.. .+.++.|+.++.+.+. .++..++.+|..+..
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~--~vr~~a~~aL~~~~~----------- 141 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW--FVRIAAAFALGEIGD----------- 141 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCC-----------
Confidence 99999999999999999999998853 3578999999977543 788899999988742
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCc
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~ 250 (314)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|.+++.++++.++..|..+|.++.....
T Consensus 142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E----------RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----------HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 3578899999999999999999999999863 1 267888899999999999999999999876553
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.44 E-value=5.1e-12 Score=104.80 Aligned_cols=179 Identities=23% Similarity=0.159 Sum_probs=151.2
Q ss_pred eeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcH
Q 021317 13 EVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 92 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l 92 (314)
.+.+|+++++.+|..|+.+|..... .+.++.|+++|.++++.++..|+.+|..+. ..+++
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----------~~~~~ 78 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------DERAV 78 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------CHHHH
Confidence 3678999999999999999974332 356899999999999999999999998873 34789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
+.|+.+|.++++.++..|+.+|.++.. ..+++.|+.++.+.+ ..++..+..+|..+..
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC----------
Confidence 999999999999999999999998753 347899999997754 4788899999987742
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
.+.++.|..++.+.++.++..|+.+|..+. .+ .+++.|..++.+.++.++..|..+|..+.
T Consensus 137 -~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE----------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH----------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch----------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999985 22 16788888999999999999999998874
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=2.1e-11 Score=101.10 Aligned_cols=185 Identities=19% Similarity=0.163 Sum_probs=152.3
Q ss_pred cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhh
Q 021317 48 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 127 (314)
Q Consensus 48 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i 127 (314)
.+..+.+++.|.++++.++..|+.+|..+. ..+.++.|+++|.++++.++..++.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 355788999999999999999999999874 35789999999999999999999999988753
Q ss_pred hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317 128 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 128 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 207 (314)
.++++.|+.+|.+.+ +.++..|+.+|..+.. ...++.|+.++.+.++.++..|+.+|..+...
T Consensus 75 --~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-- 137 (201)
T 3ltj_A 75 --ERAVEPLIKALKDED--GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-- 137 (201)
T ss_dssp --GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG--
T ss_pred --HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH--
Confidence 357899999998754 4788889999987643 45788999999999999999999999998632
Q ss_pred HHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 021317 208 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 287 (314)
Q Consensus 208 ~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l 287 (314)
..++.|..++.+.++.++..|+.+|..+.. ..+++.+...+. +.++..+..|..+|.++
T Consensus 138 ----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 ----------RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAE---TGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHH---HCCHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 378899999999999999999999999832 335555555454 45688999999999876
Q ss_pred H
Q 021317 288 V 288 (314)
Q Consensus 288 ~ 288 (314)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 5
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.41 E-value=6.5e-12 Score=109.64 Aligned_cols=220 Identities=11% Similarity=0.020 Sum_probs=161.7
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
+..|.++++.+|..|+.+|.... ..+.++.|+.+|.++++.++..|+.+|..+...+.... ..++
T Consensus 29 ~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-----~l~~ 93 (280)
T 1oyz_A 29 FRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-----NVFN 93 (280)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-----HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-----HHHH
Confidence 56788899999999999988443 12467889999999999999999999999865332211 1233
Q ss_pred HHH-HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 94 LLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 94 ~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
.|. .++.++++.++..++.+|.++..... .....+++.|+.++.+.+ ..++..++.+|.++..
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~--~~vR~~a~~aL~~~~~---------- 157 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKS--TNVRRATAFAISVIND---------- 157 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSC--HHHHHHHHHHHHTC------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCC--HHHHHHHHHHHHhcCC----------
Confidence 333 24577899999999999999873221 112346788888888754 3788888888876542
Q ss_pred ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh
Q 021317 173 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK 252 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 252 (314)
.+.++.|+.++.+.++.++..|+.+|..+....+ .+++.|+.++.+.++.++..|+.+|..+..
T Consensus 158 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----- 221 (280)
T 1oyz_A 158 -KATIPLLINLLKDPNGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----- 221 (280)
T ss_dssp --CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence 3589999999999999999999999999864432 257888899999999999999999998852
Q ss_pred hcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 253 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 253 ~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
..+++.++..+. + ++.+..|..+|..+.
T Consensus 222 ---~~~~~~L~~~l~---d--~~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 ---KRVLSVLCDELK---K--NTVYDDIIEAAGELG 249 (280)
T ss_dssp ---GGGHHHHHHHHT---S--SSCCHHHHHHHHHHC
T ss_pred ---HhhHHHHHHHhc---C--ccHHHHHHHHHHhcC
Confidence 345666655554 2 226677777777665
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=9.3e-11 Score=102.26 Aligned_cols=199 Identities=16% Similarity=0.053 Sum_probs=151.6
Q ss_pred HHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc
Q 021317 45 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 124 (314)
Q Consensus 45 l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 124 (314)
....+.++.|+..|.++++.++..|+.+|.++. ..+.++.|+.+|.++++.++..|+.+|..+...+.
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-- 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-- 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--
Confidence 345788999999999999999999999999985 35678999999999999999999999999875432
Q ss_pred hhhhhcCCcHHHHHHhhc---cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 021317 125 SPILDATAVPPLINLLKD---CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 201 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~---~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 201 (314)
.++.++.++.+ .+++..++..+..+|.++....... ....++.|+.++.+.++.++..|+.+|.+
T Consensus 87 -------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 87 -------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp -------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred -------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 23333333321 1234478889999998886422111 13467899999999999999999999988
Q ss_pred hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317 202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK 281 (314)
Q Consensus 202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~ 281 (314)
+.. ...++.|+.++.+.++.++..|+++|..+.... ..+++.++..+. +.++..+..|.
T Consensus 155 ~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~~~L~~~l~---d~~~~vR~~A~ 213 (280)
T 1oyz_A 155 IND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------SDIRDCFVEMLQ---DKNEEVRIEAI 213 (280)
T ss_dssp C---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------HHHHHHHHHHTT---CSCHHHHHHHH
T ss_pred cCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------HHHHHHHHHHhc---CCCHHHHHHHH
Confidence 753 148999999999999999999999999885322 345555655443 56688899999
Q ss_pred HHHHHHH
Q 021317 282 RLLQDMV 288 (314)
Q Consensus 282 ~~L~~l~ 288 (314)
..|.++.
T Consensus 214 ~aL~~~~ 220 (280)
T 1oyz_A 214 IGLSYRK 220 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9998875
No 47
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.33 E-value=3.9e-12 Score=124.94 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=152.3
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCC--CCCch
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTC--KENSS 125 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~ 125 (314)
..+.++++.|++++++.|..|+.+|.+|+.++..+..+...|++.+++ .+|.+++.+++..|+++|+||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456778889999999999999999999999888888899999998765 568899999999999999999954 46788
Q ss_pred hhhhcCCcHHHHHHhhccCC------------c-------hHHHHHHHHHHHHhcCC-hhhhhHHHhccCCHHHHHHHhh
Q 021317 126 PILDATAVPPLINLLKDCKK------------Y-------SKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE 185 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~~~~------------~-------~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~v~~Lv~ll~ 185 (314)
.+.+.|++++|..+++.... . ..+...++.+|++||.. .+....+. ..|.++.|+..|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHHHHHHH
Confidence 89999999999999863110 0 12445678899999866 44556666 6899999999885
Q ss_pred cC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChH---HHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 186 DG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP---GLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 186 ~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~---~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+. ...++..|+.+|..++.+++ +..+.+.+.+... .+..+ ..++...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~-~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNL-KVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCH-HHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 42 36899999999999999875 6677777766433 22223 3344555777889999874
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.28 E-value=6.1e-11 Score=119.26 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=183.4
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
..++++++.+|..|+.++. +....+..... .-...++.++.++.+++++++..++.+|..++......-.-.-.+.++
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~ 259 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE 259 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4567789999999999998 54433321111 112567888888889999999999999999987432111101125788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhh----------cc---C-------CchHHHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLK----------DC---K-------KYSKFAE 151 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~----------~~---~-------~~~~~~~ 151 (314)
.++.++.+.++.++..|+..+.+++.....+..+.. ...++.++..+. .. + ....++.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 888999999999999999999999876533332211 235566666662 11 0 1113566
Q ss_pred HHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC
Q 021317 152 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT 231 (314)
Q Consensus 152 ~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~ 231 (314)
.+..+|..++.... ..+. ...++.+..++.+.+..+|+.|+.+|.+++....+... . .-.+.++.|+..+.+.+
T Consensus 340 ~a~~~L~~la~~~~--~~~~--~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~-~l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 340 CSAAALDVLANVYR--DELL--PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-P-YLPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHG--GGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-G-GHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-H-HHHHHHHHHHHHcCCCC
Confidence 77788877775433 2333 24677888888888899999999999999987642211 1 12457889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCch---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 232 FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 232 ~~~~~~A~~~L~~l~~~~~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
+.++..|++++.+++..... ......+++.++..+. +.+++.++.|..+|.++.+..
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999864322 1112344555544443 556899999999999998653
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.11 E-value=5.7e-10 Score=112.19 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=178.5
Q ss_pred eeeccccCCHHHHHHHHHHhH-hhccCchhHHHHH----hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh
Q 021317 13 EVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIA----TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 87 (314)
Q Consensus 13 ~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~----~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 87 (314)
.+..++++++..++.++.++. ++...+..-..-. -...+|.+++.+.++++.+|..|+.+|.++.........-.
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 456778889999999999988 5543322211000 12356777888888899999999999988765432111111
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
-.+.++.+..++.++++.++..++.+|.+++...... .... .+.++.++.++++. +..++..|+..+..++.....
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhH
Confidence 2357888999999999999999999999998543211 1111 24677788887764 347888999999998876544
Q ss_pred hhHHHh-ccCCHHHHHHHhh-----------c-----------CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHH
Q 021317 167 RIAITN-SDGGILTLVETVE-----------D-----------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGL 223 (314)
Q Consensus 167 ~~~i~~-~~g~v~~Lv~ll~-----------~-----------~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~L 223 (314)
+..+.. -...++.++..+. + .+-.++..|..+|..++...++ .+. ...++.+
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~-~~l~~~l 364 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELL-PHILPLL 364 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH----HHH-HHHHHHH
Confidence 332210 0134566666662 2 1224688889999888865322 111 1356777
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhhcCCchhhc--chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 224 LRLTVEGTFEAQERARTLLDLLRDTPQEKRL--SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 224 v~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~--~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.+++.+.++.+|+.|+++|..++.+...... ...+++.++..+ .+..++.+..|..+|.++....
T Consensus 365 ~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 365 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---SDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHh
Confidence 7788888999999999999999987754221 123444443333 3667899999999999988754
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=7.8e-10 Score=105.80 Aligned_cols=255 Identities=12% Similarity=0.057 Sum_probs=180.8
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
.+++++++.+|..++.++. ++..-.. . ......+|.+..++++++++++..++.+|..+...-... ......+|
T Consensus 331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp 405 (588)
T 1b3u_A 331 ELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLP 405 (588)
T ss_dssp HHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHH
Confidence 4567788999999999988 4432111 1 122357788999999889999999998888876532111 12245788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
.+..++.+++..++..++.+|..++..-.. .+.....++.++.++.+.+ ..+++.|+.++..++....... ..
T Consensus 406 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~~~-~~-- 478 (588)
T 1b3u_A 406 AIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHV--YAIREAATSNLKKLVEKFGKEW-AH-- 478 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHHHHCHHH-HH--
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHhCchh-HH--
Confidence 999999999999999999999998742111 1122346778888887753 3788899999988876533221 22
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 253 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 253 (314)
...+|.+..++.+.+..+|..++.++..++..-+ . .......++.|++++++.++.+|..++.+|..+...-....
T Consensus 479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---Q-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---H-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 3578888888888889999999999999986432 1 22334688999999999999999999999999987543333
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 021317 254 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV 288 (314)
Q Consensus 254 ~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~ 288 (314)
....+.+.+ ..+. .+.+.+.++.|..+|..+.
T Consensus 555 ~~~~~~p~l-~~l~--~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 555 LQSEVKPIL-EKLT--QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHH-HHHT--TCSSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHH-HHHc--CCCchhHHHHHHHHHHHhh
Confidence 223334333 3343 5777899999999987653
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.09 E-value=7.5e-10 Score=105.94 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=130.8
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA 130 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~ 130 (314)
+|.+..++.++++.+|..|+.+|..++..-... ......+|.+..++.++++.+|..|+.+|..++..-+. .....
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~ 241 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEA 241 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHH
Confidence 455666777888899999999999887653321 22356788888899899999999999999888743221 11223
Q ss_pred CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH
Q 021317 131 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 210 (314)
Q Consensus 131 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~ 210 (314)
..++.+..++.+. +..++..++.+|..++...... .. ....++.++.++++.++.++..|+.+|..++...+.+.
T Consensus 242 ~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 242 LVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcc--cc-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 4677777777664 3378888888888887542221 12 24578899999999999999999999999987543221
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 211 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 211 ~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+....-...++.+..++.+.++.+|..++++|..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2112223456777777777777888777777766654
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.08 E-value=8e-10 Score=106.74 Aligned_cols=252 Identities=13% Similarity=0.063 Sum_probs=172.4
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
.++++++..+++.+-.++. ++..+++.. .-++..+.+-|.++++.++..|+.+|+++.. ++ .....++
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~-----~~~~l~~ 124 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK-----ITEYLCE 124 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-----GHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-----HHHHHHH
Confidence 3456677777777766666 433333321 1234567777788889999888888888752 11 1234567
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhc
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS 173 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 173 (314)
.+.++|.++++.+|..|+.+|.++....+ ..+.+.+.++.+..+|.+.+ +.++..|+.+|..++........+...
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSN--PMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 89999999999999999999999985322 23333578899999998754 488899999999998765422111001
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--ch
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP--QE 251 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~--~~ 251 (314)
.+.+..|+..+.+.++..+...+.+|..++..++++ . ...++.+..++++.++.++..|++++..+.... ..
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-A-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-H-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 345778888888888888889999998888654321 1 235778888889999999999999999987532 11
Q ss_pred hhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 252 KRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 252 ~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.... ..+.+.++ .+. ++++..+..|...|..+.+..
T Consensus 275 ~~~~~~~~~~~~~L~-~L~---~~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLV-TLL---SGEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp BSHHHHHHHTHHHHH-HHT---TSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHh---cCCccHHHHHHHHHHHHHHhC
Confidence 1111 22333343 233 345788888998888888654
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.07 E-value=3.5e-09 Score=102.27 Aligned_cols=262 Identities=12% Similarity=0.065 Sum_probs=177.1
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh-hHHhhcCcH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAA 92 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~g~l 92 (314)
..+.++++.+|+.|+.++. +...+++. +.+.++++.|..+|.++++.++..|+.+|..++.++... ..-...+.+
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 5677889999999999998 66555542 233577899999999999999999999999998865322 111223567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC----Chhhhh
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGRI 168 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~----~~~~~~ 168 (314)
+.|++.+.+.++-.+...+.+|..+...++. . ....++.+..++++.+. .++..|..++..+.. +++...
T Consensus 205 ~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~~~~--~V~~ea~~~i~~l~~~~~~~~~~~~ 278 (591)
T 2vgl_B 205 NKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSHANS--AVVLSAVKVLMKFLELLPKDSDYYN 278 (591)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCSSTT--HHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred HHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHhhccCCCHHHHH
Confidence 8888888889998888888888888743221 0 12456677777776544 788889999988864 223333
Q ss_pred HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-----------------HHHHHHHHH-------c----CCh
Q 021317 169 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-----------------DKYRQLILK-------E----GAI 220 (314)
Q Consensus 169 ~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-----------------~~~~~~i~~-------~----g~v 220 (314)
.+. ....+.|+.++. .++.+|..|+.+|..+....+ ...|..-.+ . ..+
T Consensus 279 ~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv 355 (591)
T 2vgl_B 279 MLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL 355 (591)
T ss_dssp HHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred HHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence 333 345677776654 677888888888887764211 112222111 1 134
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 221 PGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 221 ~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+.|..++++.++..+..+++.+..++..-.. .....++.++..+. +..+.....+...++.+.+..++
T Consensus 356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~---~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQ---TKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHCcc
Confidence 5566677778899999999999999875432 22445666665554 33466777777788888765544
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.06 E-value=3.9e-10 Score=110.69 Aligned_cols=189 Identities=12% Similarity=0.014 Sum_probs=143.6
Q ss_pred eeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcC
Q 021317 14 VFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASG 90 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g 90 (314)
+..|++++++.|..|+.+|.+...++.++..+...|+|..++ .+|.+++.+++..|+.+|+||+.+. +.+..+...|
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence 356899999999999999995567899999999999988765 5688889999999999999999864 5577788999
Q ss_pred cHHHHHHHhccCC---------------------HHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccC-Cch
Q 021317 91 AAPLLVQILHSGS---------------------VQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCK-KYS 147 (314)
Q Consensus 91 ~l~~Lv~lL~~~~---------------------~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~ 147 (314)
++++|..+|+... ..+..+++.+|.+|+ .+++....+.+.+.++.|+..|.+.+ ...
T Consensus 120 il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~ 199 (684)
T 4gmo_A 120 VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQ 199 (684)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCH
T ss_pred hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcH
Confidence 9999999986421 124457888999999 45556667888899999999986543 234
Q ss_pred HHHHHHHHHHHHhcCChh-hhhHHHhccCCHH--HHHHHhhcCCHHHHHHHHHHHHHhh
Q 021317 148 KFAEKATALLEILSSSEE-GRIAITNSDGGIL--TLVETVEDGSLVSTQHAVGALLSLC 203 (314)
Q Consensus 148 ~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~v~--~Lv~ll~~~~~~~~~~A~~~L~~L~ 203 (314)
++...++.+|.+++.+.. ....+. +.|... .++..+...+...+..++++|.|+.
T Consensus 200 ~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 200 DIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 788899999999998854 445555 555432 2222223344445678889999974
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.94 E-value=1.1e-08 Score=94.85 Aligned_cols=267 Identities=11% Similarity=0.060 Sum_probs=173.3
Q ss_pred eeccccC--CHHHHHHHHHHhH-hhccC-chhHHHHHhcCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCC-Ch-hH
Q 021317 14 VFMETYF--EGYARRLNLMGPL-WQLSK-TRNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-NK-PA 85 (314)
Q Consensus 14 v~~l~~~--~~~~~~~a~~al~-l~~~~-~~~~~~l~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~-~~-~~ 85 (314)
+..+.++ ++..++.++.++. ++... ++.-... -...++.++..+.++ ++.+|..|+.++.++...-. +- ..
T Consensus 134 ~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 212 (462)
T 1ibr_B 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212 (462)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556677 8999999999998 55432 2111111 124678888889877 78999999999998654211 00 00
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh
Q 021317 86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE 164 (314)
Q Consensus 86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 164 (314)
....-.++.+.+.+.++++.++..++.+|..++...... ......+.++.++..+.+.+ ..++..++..+..++...
T Consensus 213 ~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHH
Confidence 011114666667778889999999999999998433211 11111256777777776643 378888888887776543
Q ss_pred hhh------------------hHHHh--ccCCHHHHHHHhhcC-------CHHHHHHHHHHHHHhhccCcHHHHHHHHHc
Q 021317 165 EGR------------------IAITN--SDGGILTLVETVEDG-------SLVSTQHAVGALLSLCQSCRDKYRQLILKE 217 (314)
Q Consensus 165 ~~~------------------~~i~~--~~g~v~~Lv~ll~~~-------~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~ 217 (314)
... ..++. -...+|.++..+.+. +..++..|+.+|..++...++ .+. .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~-~ 365 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV-P 365 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THH-H
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHH-H
Confidence 110 01110 023566677777432 346889999999999876432 111 2
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 218 GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 218 g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
..++.+.+.+.+.+..+|+.|+.++..++.+...+.+. ..+++.++..+. +..++.+..|..+|.++....
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhc
Confidence 45677777888889999999999999999765422221 345555554443 666899999999999999754
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.93 E-value=4.3e-08 Score=98.22 Aligned_cols=269 Identities=11% Similarity=0.054 Sum_probs=175.6
Q ss_pred cccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-ChhHHhhcCc
Q 021317 17 ETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGA 91 (314)
Q Consensus 17 l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~g~ 91 (314)
+.++ ++.+|..++.++. ++.....+- ........++.+...+.+++++++..++.+|..+..... .-........
T Consensus 181 l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 260 (876)
T 1qgr_A 181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260 (876)
T ss_dssp HSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444 6889999999988 443222110 011112356677777778889999999999999886422 1111223478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCC------------------CCchhhhh---cCCcHHHHHHhhcc-----CC
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLSTCK------------------ENSSPILD---ATAVPPLINLLKDC-----KK 145 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~lL~~~-----~~ 145 (314)
++.++..+.+.++.++..++..+.+++... ........ ...++.++..+... ++
T Consensus 261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~ 340 (876)
T 1qgr_A 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD 340 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence 888888888889999999999998887431 00001111 23566777777532 12
Q ss_pred chHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHHHHcCChHHHH
Q 021317 146 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKEGAIPGLL 224 (314)
Q Consensus 146 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i~~~g~v~~Lv 224 (314)
+..++..+..++..++.... ..++ ...++.+...+.+.+..+|+.|+.+|..++.... +.....+ ...++.|+
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~ 414 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLI 414 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHH
Confidence 23567778888877765433 1233 2466777778888889999999999999997654 2222222 34788999
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 225 RLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
..+.+.++.++..|+++|.+++............++.+++.+......+++.++.|..+|.++....
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764332111222333444333222224788999999999998653
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.90 E-value=5.4e-09 Score=96.92 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=161.7
Q ss_pred eccccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC--hhHHhh
Q 021317 15 FMETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAA 88 (314)
Q Consensus 15 ~~l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~--~~~i~~ 88 (314)
..+..+ ++.+|..|+.++. .+...+++- ......-.++.+...+.+++++++..++.+|..++..... ...+ .
T Consensus 179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~ 257 (462)
T 1ibr_B 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G 257 (462)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-T
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345555 6899999999987 332111110 0111111356666777788999999999999998864321 1222 1
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCC------------------CCchhhhh---cCCcHHHHHHhhcc----
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK------------------ENSSPILD---ATAVPPLINLLKDC---- 143 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~lL~~~---- 143 (314)
.+.++.++..+.+.++.++..++..+.+++... .....+.+ ...+|.++..+...
T Consensus 258 ~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~ 337 (462)
T 1ibr_B 258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 337 (462)
T ss_dssp TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc
Confidence 277888888899999999999999998887432 01111222 23566666777542
Q ss_pred -CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHH-HHHHHHHcCChH
Q 021317 144 -KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK-YRQLILKEGAIP 221 (314)
Q Consensus 144 -~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~-~~~~i~~~g~v~ 221 (314)
++...++..|..+|..++.... ..+. ...++.+...+.+.+..+++.|+.+|..++.+...+ .+..+ ...++
T Consensus 338 ~~~~~~~r~~a~~~L~~l~~~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~ 411 (462)
T 1ibr_B 338 DDDDWNPCKAAGVCLMLLATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMP 411 (462)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHH
Confidence 1122567788888888776533 2333 346778888888888999999999999999754311 11111 46889
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHh
Q 021317 222 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA 267 (314)
Q Consensus 222 ~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~ 267 (314)
.|+..+.+.++.+|..|+++|.+++............++.+++.|.
T Consensus 412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 9999999999999999999999998755432222345566666554
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.75 E-value=2.8e-07 Score=92.12 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=172.4
Q ss_pred cccC--CHHHHHHHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-C-ChhHHhhcC
Q 021317 17 ETYF--EGYARRLNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-P-NKPAIAASG 90 (314)
Q Consensus 17 l~~~--~~~~~~~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~-~~~~i~~~g 90 (314)
+.++ ++.+|..++.++. .+..-..+- ........++.|...+.+++++++..++.+|..++... + ....+ ...
T Consensus 188 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~ 266 (861)
T 2bpt_A 188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQA 266 (861)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3444 7899999999987 432211110 00011224566777778889999999999999987632 1 12222 126
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--------------Cchhhhh---cCCcHHHHHHhhccC-----CchH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--------------NSSPILD---ATAVPPLINLLKDCK-----KYSK 148 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--------------~~~~i~~---~g~i~~Lv~lL~~~~-----~~~~ 148 (314)
.++.+...+.+.++.++..++..+..++.... ....+.. ...++.++..+.... ++..
T Consensus 267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 267 LYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCc
Confidence 67777888888899999999999998875321 0111111 346777877776521 1236
Q ss_pred HHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc-HHHHHHHHHcCChHHHHHhh
Q 021317 149 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-DKYRQLILKEGAIPGLLRLT 227 (314)
Q Consensus 149 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~i~~~g~v~~Lv~ll 227 (314)
++..+..+|..++.... ..++ ...++.+...+.+.+...++.|+.+|..++.... +.....+ ...++.|+..+
T Consensus 347 ~r~~a~~~L~~l~~~~~--~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l 420 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCG--NHIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLM 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcc--HhHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHc
Confidence 77788888888776432 2222 2356677777778888999999999999997653 2222222 24788889989
Q ss_pred hcCCHHHHHHHHHHHHHhhcCCchhh----cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 228 VEGTFEAQERARTLLDLLRDTPQEKR----LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 228 ~~~~~~~~~~A~~~L~~l~~~~~~~~----~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+.++.++..+++++..++....... .-..+++.++..+. +. ++.+..|..+|.++.+.
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ---DH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT---SC-HHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc---cC-hHHHHHHHHHHHHHHHh
Confidence 99999999999999999886432211 12334444444442 33 78889999999988864
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.71 E-value=5.5e-07 Score=87.29 Aligned_cols=249 Identities=14% Similarity=0.065 Sum_probs=158.7
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
.++.+++...++-+-.++. ++..+++-.. -++..|.+-|.++++.++..|+++|+++... .+. ...++
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~-~~l~~ 145 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC-RDLAG 145 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH-HHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH-HHHHH
Confidence 3456777777777777777 4444433211 2345678888899999999999999999731 222 45688
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN 172 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 172 (314)
.+.++|.++++.+|..|+.++.++.. +++. + .+.++.+..++.+.+ +.++..|+.+|..++..........
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v-~~~~~~l~~lL~D~d--~~V~~~Al~~L~~i~~~~~~~~~~~- 217 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----M-EMFLPATKNLLNEKN--HGVLHTSVVLLTEMCERSPDMLAHF- 217 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----G-GGGGGGTTTSTTCCC--HHHHHHHHHHHHHHCCSHHHHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----H-HHHHHHHHHHhCCCC--HhHHHHHHHHHHHHHHhChHHHHHH-
Confidence 99999999999999999999999984 4332 2 257777888887754 4788899999999987754322222
Q ss_pred ccCCHHHHHHHhhc---------------CCHHHHHHHHHHHHHhhccCcHHHHHH-------HH---------------
Q 021317 173 SDGGILTLVETVED---------------GSLVSTQHAVGALLSLCQSCRDKYRQL-------IL--------------- 215 (314)
Q Consensus 173 ~~g~v~~Lv~ll~~---------------~~~~~~~~A~~~L~~L~~~~~~~~~~~-------i~--------------- 215 (314)
...++.++.+|.+ .++..+...+.+|..++..+++ ..+. +.
T Consensus 218 -~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 218 -RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp -HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHHHHHH
Confidence 2477888877753 3677777788888887765432 1111 00
Q ss_pred -------H--------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHH
Q 021317 216 -------K--------EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETA 280 (314)
Q Consensus 216 -------~--------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A 280 (314)
. ..+++.|..++.+.++.+|..|..+|..+....+. .+. .....++..+ .+.+...+.+|
T Consensus 296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-~~~-~~~~~i~~~l---~d~d~~Ir~~a 370 (618)
T 1w63_A 296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-AVQ-RHRSTIVDCL---KDLDVSIKRRA 370 (618)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-HHG-GGHHHHHHGG---GSSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-HHH-HHHHHHHHHc---cCCChhHHHHH
Confidence 0 02455666666667777777777777766643321 111 1111222222 23345566666
Q ss_pred HHHHHHHHH
Q 021317 281 KRLLQDMVQ 289 (314)
Q Consensus 281 ~~~L~~l~~ 289 (314)
..+|..+..
T Consensus 371 lelL~~l~~ 379 (618)
T 1w63_A 371 MELSFALVN 379 (618)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcc
Confidence 666666553
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.68 E-value=1.3e-07 Score=94.65 Aligned_cols=267 Identities=11% Similarity=0.031 Sum_probs=169.7
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCc-hhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh--hHHhhcC
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKT-RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK--PAIAASG 90 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~--~~i~~~g 90 (314)
..+.++++..|+.|+.++. ++.... +.-.... ...++.++..+.++++.++..+++++..++..-... ..-.-..
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 3456788999999999999 554322 2112222 246888999999999999999999999988631100 0001235
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC--Cchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKE--NSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE- 165 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~- 165 (314)
.++.++..+.++ +.++..++++|.+++..-. ....+.. ...++.|+.++.+.+.+..++..+..++..++....
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 678888888776 8999999999999985321 1111211 346778888887644334677788888887765422
Q ss_pred hhhHHHhccCCHHHHHHHhhcC---------------CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcC
Q 021317 166 GRIAITNSDGGILTLVETVEDG---------------SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 230 (314)
Q Consensus 166 ~~~~i~~~~g~v~~Lv~ll~~~---------------~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~ 230 (314)
.....+ ...++.++..+.+. ...++..++.+|.+++...++.....+ ...++.++..+++.
T Consensus 534 ~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 534 TVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKK 609 (861)
T ss_dssp GGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHST
T ss_pred hhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccC
Confidence 222222 23666777776531 345678899999998865532111111 23566777778777
Q ss_pred CH-HHHHHHHHHHHHhhcCCchhhc--chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 231 TF-EAQERARTLLDLLRDTPQEKRL--SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 231 ~~-~~~~~A~~~L~~l~~~~~~~~~--~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
++ .+++.+..++..++........ -...++.++..+. +.+.+.+..|..++..+.+.
T Consensus 610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~---~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN---QVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence 66 8899999999988764433221 1234444444442 33456778888888877753
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.67 E-value=1.1e-06 Score=85.27 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=152.0
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
..+.+.++.+|+.|+.++. +...+++.. .++++.+..+|.+.++.++..|+.+|..++..+..... .-...+|
T Consensus 149 ~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~-~~~~~v~ 222 (618)
T 1w63_A 149 KLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA-HFRKLVP 222 (618)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH-HHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH-HHHHHHH
Confidence 3456677888888888877 555555422 25677777888878888888888888888764311101 1136788
Q ss_pred HHHHHhcc---------------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhcc----CCchHHHHHHH
Q 021317 94 LLVQILHS---------------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC----KKYSKFAEKAT 154 (314)
Q Consensus 94 ~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~~a~ 154 (314)
.++++|.+ .++-.+...+.+|..++..++. .....++.|..++... +....+...|.
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 88888764 4788888899999999865321 1123445555555321 11225666677
Q ss_pred HHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHH
Q 021317 155 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEA 234 (314)
Q Consensus 155 ~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~ 234 (314)
.++..+...+..+ ..+++.|..++.+.++.++..|+.+|..++...+. ++. .....++..+.+.+..+
T Consensus 299 ~~i~~l~~~~~l~------~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~~-~~~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 299 LTIMDIKSESGLR------VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----AVQ-RHRSTIVDCLKDLDVSI 366 (618)
T ss_dssp HHHHHSCCCHHHH------HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----HHG-GGHHHHHHGGGSSCHHH
T ss_pred HHHHhcCCCHHHH------HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----HHH-HHHHHHHHHccCCChhH
Confidence 7777765533222 13566777888877788888888888888755321 121 23456666677777888
Q ss_pred HHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 235 QERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 235 ~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
+..|..+|..++...+- ..+++.+...+. +.+++.+..+...+..+..
T Consensus 367 r~~alelL~~l~~~~nv----~~iv~eL~~~l~---~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 367 KRRAMELSFALVNGNNI----RGMMKELLYFLD---SCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHCCSSST----HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccH----HHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 88888888777765431 112233333333 2235566666666666664
No 62
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=2.3e-06 Score=70.97 Aligned_cols=222 Identities=18% Similarity=0.131 Sum_probs=160.8
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Cchh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE-NSSP 126 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~ 126 (314)
+.+..|..+|...|+.++.+++.+|..+-.. +.......-...++.++.++.+.+..+...|+.+|..|-.+.+ ....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4567889999999999999999999998765 3333333345789999999999999999999999999986543 3444
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
+.. .+..|.+++.++++ -+...+...+..+......+ +.+..+.+++++.+..++..++.+|.+++...
T Consensus 113 y~K--l~~aL~dlik~~~~--il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDD--MMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHTTSCCH--HHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHhcCCCc--hHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 444 56778888887644 77888888888873222222 34457888888899999999999999999865
Q ss_pred cHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-chhhc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 021317 207 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QEKRL-SSSVLEKIVYDIAARVDGADKAAETAKRLL 284 (314)
Q Consensus 207 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~-~~~~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L 284 (314)
.+ ...+ .+.+.-+-.++++.|+.+++.|..+|..+...+ .+... +...+-..|..|. +..|.+..+.+|+-.-
T Consensus 182 ~D--~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 182 AD--SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV-YREGAPIIRLKAKKVS 256 (265)
T ss_dssp SS--CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG-GCSSCHHHHHHHHHHH
T ss_pred CC--HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHHH
Confidence 32 1111 135555667888999999999999998887766 33222 3334444555555 3456688888887655
Q ss_pred HH
Q 021317 285 QD 286 (314)
Q Consensus 285 ~~ 286 (314)
..
T Consensus 257 ~~ 258 (265)
T 3b2a_A 257 DL 258 (265)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.61 E-value=2.6e-07 Score=92.49 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=151.2
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--------------
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-------------- 80 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-------------- 80 (314)
.+.+++++++..++.++. ++...+..-........++.++..+.+.+++++..++..+.+++...
T Consensus 225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence 346778899999999988 66554443233333467888888888888999999998888886531
Q ss_pred -----CChhHHh--hcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCc
Q 021317 81 -----PNKPAIA--ASGAAPLLVQILHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY 146 (314)
Q Consensus 81 -----~~~~~i~--~~g~l~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 146 (314)
.....+. -...+|.+++.|.. .+..+|..|..+|..++..-. ..++. ..++.+...+.+. +
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~--~ 379 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNP--D 379 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCS--S
T ss_pred CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCC--C
Confidence 0111110 13456777777752 345788899999988874322 12222 3555566666554 3
Q ss_pred hHHHHHHHHHHHHhcCChh--hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH--HHHHHHcCChHH
Q 021317 147 SKFAEKATALLEILSSSEE--GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY--RQLILKEGAIPG 222 (314)
Q Consensus 147 ~~~~~~a~~~L~~L~~~~~--~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~--~~~i~~~g~v~~ 222 (314)
..++..++.++..++.... ...... ...++.++..+.+.++.++..|+++|.+++...++.. ...+ ...++.
T Consensus 380 ~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~ 455 (876)
T 1qgr_A 380 WRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQC 455 (876)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHH
Confidence 4888999999999987643 222232 3478999999999899999999999999997643210 0111 235677
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 223 LLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 223 Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
|+..+.+. +.++..|+++|.+++..
T Consensus 456 l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 456 LIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 77777764 89999999999998864
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.53 E-value=7e-07 Score=75.94 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=135.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
+.+.+.+.+.+...|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..- ...+..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l--~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL--AKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--GGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 4588888899999999999999998764 3211100 1245778888894 899999999999999999432 112222
Q ss_pred --cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc-C
Q 021317 130 --ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS-C 206 (314)
Q Consensus 130 --~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~-~ 206 (314)
...++.++..+.+.+. .+++.+..+|.++...... ...++.+...+++.++.++..++..|..+... .
T Consensus 95 ~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKP--NVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 3478889999888644 8889999999988765321 12567888889988999999999999996433 2
Q ss_pred cH-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 207 RD-KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 207 ~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
++ .....+ ...++.|+.++.+.++++|..|..++..++..
T Consensus 166 ~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 166 PTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 21 112222 24788999999999999999999999998753
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.47 E-value=4.9e-06 Score=70.60 Aligned_cols=184 Identities=10% Similarity=0.057 Sum_probs=129.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhh-ccCCchHHHHHHHHHHHHhcCChhh-hhHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLK-DCKKYSKFAEKATALLEILSSSEEG-RIAI 170 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~~-~~~i 170 (314)
.+.+.+.+.+...|..++..|..+... +.....-. ...++.|...+. +. +..++..|+.++..|+..-.. -...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 477888899999999999999999854 33111111 235667777774 54 347888999999988854221 1122
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD-TP 249 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~-~~ 249 (314)
+ ...++.++..+++.+..+++.|..+|.+++...+ . . ..++.|...+.+.++.+|..+...|..+.. +.
T Consensus 96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 2 3478999999999999999999999999987542 1 1 257778888899999999999999998654 33
Q ss_pred chhhcc---hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 021317 250 QEKRLS---SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME 293 (314)
Q Consensus 250 ~~~~~~---~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~ 293 (314)
+..... ...++.++..+ .|...+.+..|..++..+.+.-.+
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l---~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTL---NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHH---TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCccHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHcCH
Confidence 321111 23444444344 366788999999999998865433
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.44 E-value=3.9e-07 Score=95.03 Aligned_cols=262 Identities=13% Similarity=0.071 Sum_probs=170.6
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchh-HHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRN-KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
..+.++|..+|..|...|......+.. -..-.....++.+++.|.++++.+|..|+.+|.+++..-.. .. -...++
T Consensus 13 ~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~--~~~i~~ 89 (1230)
T 1u6g_C 13 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ--VETIVD 89 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH--HHHHHH
T ss_pred HhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH--HHHHHH
Confidence 446788999999999888732222111 00001124567788999888999999999999999864221 11 134677
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCc----hhh--hhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh-
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENS----SPI--LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG- 166 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~----~~i--~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~- 166 (314)
.++..|.++++.+|..++.+|..++..-... ... .-...+|.|+..+.+. ++..++..|+.++..++.....
T Consensus 90 ~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~~~~~ 168 (1230)
T 1u6g_C 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSRQGGL 168 (1230)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhHhH
Confidence 8888888888899999999999988432111 011 1245788888888742 2347888999999888742111
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHh
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLL 245 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~l 245 (314)
-.... ...++.++..+.+.++.+|..|+.+|..++...+++ + -...++.|++.+.+.+ +..+..++.++..+
T Consensus 169 l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 169 LVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp CTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 00111 235667777888888999999999999999765321 1 1245788888666543 46677788888888
Q ss_pred hcCCchhhcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 246 RDTPQEKRLS--SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 246 ~~~~~~~~~~--~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+......... ...++.++..+. +.++..++.|..++..+.+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~---d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 7654332211 234554544443 44567888888888888764
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.44 E-value=1.1e-05 Score=78.25 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=98.8
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
.++.+++...++.+-.++. .+..+++--.. ++..+.+=|.++++-++-.|+++|+++.. ..+. ...++
T Consensus 81 kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e~~-~~l~~ 149 (621)
T 2vgl_A 81 NLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS-----REMA-EAFAG 149 (621)
T ss_dssp HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HHHH-HHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HHHH-HHHHH
Confidence 4667888888888888888 44444432211 23456677788999999999999999954 1222 35678
Q ss_pred HHHHHh--ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC
Q 021317 94 LLVQIL--HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 163 (314)
Q Consensus 94 ~Lv~lL--~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 163 (314)
.+.++| .+.++.+|..|+.++.++....+ ..+-..+.++.+.++|.+.+ +.++..|+.++..++..
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d--~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQH--LGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCC--ccHHHHHHHHHHHHHHh
Confidence 889999 88999999999999999995322 12222578999999997654 37888999998888764
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.43 E-value=3.2e-06 Score=70.14 Aligned_cols=215 Identities=12% Similarity=0.002 Sum_probs=151.0
Q ss_pred ceeeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhc
Q 021317 12 VEVFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAAS 89 (314)
Q Consensus 12 ~~v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~ 89 (314)
+...+|...|+.++..++.+|- +...-+...+...-...++.++.++.+.+..+...|..+|..|-.+ +-......
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~-- 114 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL-- 114 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH--
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH--
Confidence 3457888999999999999999 6665333333333335689999999999999999999999998764 32333332
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
.....+..++.++++-.+..++..+..|.... ...+++..+..++.+. +.+++..+++++.|++...+....
T Consensus 115 Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 115 KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHH
Confidence 24567888889999999999999999993221 1234667788888554 448889999999999887654443
Q ss_pred HHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcH-HHHHHHHHcCChHHHHH-hh-hcCCHHHHHHHHHHH
Q 021317 170 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-KYRQLILKEGAIPGLLR-LT-VEGTFEAQERARTLL 242 (314)
Q Consensus 170 i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~i~~~g~v~~Lv~-ll-~~~~~~~~~~A~~~L 242 (314)
+- +.+..+-.++++.++.+++.|+.+|..+....-. +....+ -.+-..+. +. ..+.|.++..|-.+-
T Consensus 187 ~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 187 LT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp GG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 32 3666788888999999999999999998876421 111111 12222332 33 456777777766543
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.42 E-value=3.4e-08 Score=76.02 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=89.0
Q ss_pred hcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchh
Q 021317 47 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP 126 (314)
Q Consensus 47 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~ 126 (314)
....++.++.+|+++++.++..|+.+|.++.. . .++.|+.+|+++++.+|..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 44667889999999899899888877776531 1 36999999999999999999999988763
Q ss_pred hhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHH
Q 021317 127 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 201 (314)
Q Consensus 127 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 201 (314)
..+++.|+.++.+.+. .++..+..+|.++.. ..+++.|+.++++.++.++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~--~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSG--FVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCT--HHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999987644 788899999987752 3467889999988889999999988764
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.33 E-value=1e-07 Score=73.24 Aligned_cols=116 Identities=19% Similarity=0.067 Sum_probs=88.8
Q ss_pred cceeeccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcC
Q 021317 11 GVEVFMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG 90 (314)
Q Consensus 11 ~~~v~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g 90 (314)
...+.+|+++++.+|..|+++|..... ..++.|+.+|+++++.+|..|+.+|.++. ...
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~----------~~~ 73 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DER 73 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC----------CHH
Confidence 344677888888889888888863321 12689999999999999999999999884 245
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 91 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
.++.|+.+|+++++.++..|+++|.++.. ..+++.|..++++.+. .++..|..+|..
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~--~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG--FARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT--HHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH--HHHHHHHHHHHh
Confidence 68999999999999999999999998862 3478899999976543 777777777643
No 71
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.2e-05 Score=67.11 Aligned_cols=189 Identities=12% Similarity=0.066 Sum_probs=131.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hccC-CCChhHHhh-cCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcCCC---CCc-
Q 021317 53 PLVELLKFQNGTLRELAAAAILT-LSAA-APNKPAIAA-SGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCK---ENS- 124 (314)
Q Consensus 53 ~Lv~lL~~~~~~~~~~a~~~L~~-La~~-~~~~~~i~~-~g~l~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~~- 124 (314)
.+-+.+.+.+..-|..|+..|.. +... +.......+ ...+..|...+ .+.+..++..|+.+|..|+..- .-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35677788899999999999999 8642 221100111 24577888888 7889999999999999999421 211
Q ss_pred hhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCCh-hhhhHH-HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 125 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAI-TNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~i-~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
.+. .-.++.+++.+.+... .+++.+..++-.++..- +.-..- . ...++.|+..|++.++.+++.++.+|..+
T Consensus 100 ~y~--~~llp~ll~~l~dkk~--~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKP--SVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 122 2378889999987654 77778777777776532 111100 0 12667888889888999999999999998
Q ss_pred hccCcH--HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 203 CQSCRD--KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 203 ~~~~~~--~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
....+. +.-........++.|.+++.+.++.+|..|..++..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 865431 101111224689999999999999999999999999875
No 72
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.26 E-value=3.5e-06 Score=87.86 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=152.0
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCh-hHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD 129 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 129 (314)
++.|+.-+.++++++|..|...|.+....+... ..-.....++.+++.|.+.++.+|..|+.+|.+++..-.. ...
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~- 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV- 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH-
Confidence 566777888999999999999888865433211 0011235678899999999999999999999999854221 111
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhh-------hHHHhccCCHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-------IAITNSDGGILTLVETVE-DGSLVSTQHAVGALLS 201 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-------~~i~~~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~ 201 (314)
...++.|+..+.+.++ .++..+..+|..++..-... .... ...+|.|+..+. +.+..+++.|+.+|..
T Consensus 85 ~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 2356777777776544 67777888887776432211 1122 347889999998 4778999999999999
Q ss_pred hhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHH
Q 021317 202 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK 281 (314)
Q Consensus 202 L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~ 281 (314)
++...++.....+ ...++.|+..+.+.++.+|+.|+.+|..++....... ....++.++..+.... ++..+..|.
T Consensus 161 ~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~--~~~~r~~a~ 235 (1230)
T 1u6g_C 161 MLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKND--SMSTTRTYI 235 (1230)
T ss_dssp HHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTC--SSCSCTTHH
T ss_pred HHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCC--chhHHHHHH
Confidence 9853221111111 2356778888888889999999999999987665433 2345666666665321 123456677
Q ss_pred HHHHHHHHH
Q 021317 282 RLLQDMVQR 290 (314)
Q Consensus 282 ~~L~~l~~~ 290 (314)
.++..+...
T Consensus 236 ~~l~~l~~~ 244 (1230)
T 1u6g_C 236 QCIAAISRQ 244 (1230)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 73
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.22 E-value=3.9e-05 Score=74.30 Aligned_cols=212 Identities=15% Similarity=0.095 Sum_probs=137.1
Q ss_pred ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
.+.++.+|++|+.++. +...+++. +...+.++.+.++|.+.++.++..|+.++..++..+.. . -...+|.++
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~ 230 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAV 230 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHH
Confidence 6778999999999988 66655542 22258899999999988999999999999999874321 1 123455555
Q ss_pred HHhc----cC-------------CHHHHHHHHHHHHHhcCCC--CCchhhhhcCCcHHHHHHhhc---------cCCchH
Q 021317 97 QILH----SG-------------SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKD---------CKKYSK 148 (314)
Q Consensus 97 ~lL~----~~-------------~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~ 148 (314)
+.|. .+ ++-.+...+..|..++..+ +.+..+.+ .++.++..+.+ .+....
T Consensus 231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~a 308 (621)
T 2vgl_A 231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNA 308 (621)
T ss_dssp HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHH
Confidence 4443 21 5778888888888887532 22222222 33333333211 111124
Q ss_pred HHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhh
Q 021317 149 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV 228 (314)
Q Consensus 149 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 228 (314)
+.-.|..++..+...++... .++..|..++.+.++.++-.|+..|..++...++ ...+ . .....++..++
T Consensus 309 Vl~ea~~~i~~l~~~~~~~~------~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~-~-~~~~~i~~~L~ 378 (621)
T 2vgl_A 309 VLFEAISLIIHHDSEPNLLV------RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV-K-THIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHCCCHHHHH------HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH-H-TTHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcHHHHH------HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH-H-HHHHHHHHHhc
Confidence 55667777777764333222 2556788888777888888999999888876532 1222 2 34566667677
Q ss_pred -cCCHHHHHHHHHHHHHhhcC
Q 021317 229 -EGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 229 -~~~~~~~~~A~~~L~~l~~~ 248 (314)
+.+..++..|..+|..++..
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCH
T ss_pred cCCCHhHHHHHHHHHHHHcCh
Confidence 78888888888888888754
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.16 E-value=6e-05 Score=66.19 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=124.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH-hcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
+..+++-|.+++.+.+..++.-|.. ++.+.+-...++..+++..|+.+..+++ +.....+++++.+|-.+.++-..+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~--gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD--HNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC--hHHHHHHHHHHHHHHhccccccch
Confidence 4567777888888889999999998 6677888889999999999999998874 478899999999999998888788
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--------cC--ChHHHHHhhh---cCCHHHHHH
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--------EG--AIPGLLRLTV---EGTFEAQER 237 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--------~g--~v~~Lv~ll~---~~~~~~~~~ 237 (314)
+.+...|..+..++.+....+...|+..|..++...+. +...+.+ .| -.+.|+.++. ..+.+++.+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 76677899999999988899999999999999887632 2222222 12 3778999887 678999999
Q ss_pred HHHHHHHhhcC
Q 021317 238 ARTLLDLLRDT 248 (314)
Q Consensus 238 A~~~L~~l~~~ 248 (314)
|..++..+-..
T Consensus 277 amtLIN~lL~~ 287 (339)
T 3dad_A 277 TVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99988876543
No 75
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.03 E-value=6e-05 Score=69.37 Aligned_cols=224 Identities=10% Similarity=0.015 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhHhhccCchhHHHHHhcC--CcHHHHHHhcC---------------C--CHHHHHHHHHHHHHhccCCCC
Q 021317 22 GYARRLNLMGPLWQLSKTRNKVKIATAG--AIPPLVELLKF---------------Q--NGTLRELAAAAILTLSAAAPN 82 (314)
Q Consensus 22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~---------------~--~~~~~~~a~~~L~~La~~~~~ 82 (314)
...+-.++.++......+++|..+.+.+ .+|+++.++.. + ..+++-+++-+++-|+.+++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 3445667888884455789998887643 36777654431 1 245677889999999998877
Q ss_pred hhHHhhcCcH--HHHHHHhccC-CHHHHHHHHHHHHHhcCCC-CCch-----hhhhcCCcHHHHHHhhcc-CCchHHHHH
Q 021317 83 KPAIAASGAA--PLLVQILHSG-SVQGRVDAVTALHYLSTCK-ENSS-----PILDATAVPPLINLLKDC-KKYSKFAEK 152 (314)
Q Consensus 83 ~~~i~~~g~l--~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~-~~~~-----~i~~~g~i~~Lv~lL~~~-~~~~~~~~~ 152 (314)
...+...+.. +.|+.+++.. .+.+..-++.+|+||.... +... .++..++ +++++.|+.. -.++++.+.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence 7777766643 6677777764 6889999999999999654 2222 2222344 5566666542 233344322
Q ss_pred HH-------HHHHHhcCCh---------------hhh---------hHHHhc-cCCHHHHHHHhhc----------CCHH
Q 021317 153 AT-------ALLEILSSSE---------------EGR---------IAITNS-DGGILTLVETVED----------GSLV 190 (314)
Q Consensus 153 a~-------~~L~~L~~~~---------------~~~---------~~i~~~-~g~v~~Lv~ll~~----------~~~~ 190 (314)
-- ..+..+++.+ .++ .++..+ -..+..|+.+|++ .++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 11 1111222222 122 223211 1236789999973 2577
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 191 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 191 ~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+...||.=++.++.+.| ..|..+-+-|+=+.+++++.+.+++++.+|..++..+-.
T Consensus 421 ~laVAc~Digefvr~~P-~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 421 IIQVALNDITHVVELLP-ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCc-chhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 78889999999999886 678777778988888999999999999999999987643
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.01 E-value=0.0021 Score=64.24 Aligned_cols=228 Identities=13% Similarity=0.023 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh-c
Q 021317 22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-H 100 (314)
Q Consensus 22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL-~ 100 (314)
+.++..|+.+|.++.-...+. .+++.|.++|.+++...+..|+.+|+.+-.-..+. .++..|+..+ +
T Consensus 451 ~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhc
Confidence 455666666666443222221 23567888888777767777777777653322222 2455666664 4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHH
Q 021317 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTL 180 (314)
Q Consensus 101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~L 180 (314)
+.+..++..++.+|..+.... ...++.+++.|.... ++-++..++-++..-..+..+. .+|+.|
T Consensus 519 ~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~-------~aIq~L 582 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGR--------QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN-------SAVKRL 582 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH-------HHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH-------HHHHHH
Confidence 457888999999998776432 246788888888643 3345444444443322222222 234456
Q ss_pred HHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHHHhhcCCchhhcchhh
Q 021317 181 VETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSV 258 (314)
Q Consensus 181 v~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~ 258 (314)
+..+. +.+..+|..|+.+|+.+...+++ .++.++. +.+++++.+|..|+.+|..++.+.+. ..+
T Consensus 583 L~~~~~d~~d~VRraAViaLGlI~~g~~e----------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~a 648 (963)
T 4ady_A 583 LHVAVSDSNDDVRRAAVIALGFVLLRDYT----------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSA 648 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTSSSCS----------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHH
T ss_pred HHHhccCCcHHHHHHHHHHHHhhccCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHH
Confidence 66554 45688999999999998876542 5677776 55678999999999999999765542 233
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317 259 LEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 294 (314)
Q Consensus 259 ~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~ 294 (314)
++.| ..+. .|.++.++..|.-+|..+-..+.+.
T Consensus 649 id~L-~~L~--~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 649 IDVL-DPLT--KDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHH-HHHH--TCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHH-HHHc--cCCCHHHHHHHHHHHHHHhcCCccc
Confidence 4423 3333 4667778888888888777654444
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00016 Score=61.71 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=128.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hcC-CCCCchhhhh-cCCcHHHHHHh-hccCCchHHHHHHHHHHHHhcCChh--hhh
Q 021317 95 LVQILHSGSVQGRVDAVTALHY-LST-CKENSSPILD-ATAVPPLINLL-KDCKKYSKFAEKATALLEILSSSEE--GRI 168 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~n-Ls~-~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~~~a~~~L~~L~~~~~--~~~ 168 (314)
+.+.+.+.+..-|..++..|.. +.. .++....-.+ ...+..|...+ ++. +..++..|+.++..|+.+-. .-.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhccccccc
Confidence 4456788899999999999999 873 3221110112 23566777777 454 33778889999998885432 111
Q ss_pred -HHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 169 -AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 169 -~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
... .-.+|.++..+++....+++.+..+|..++...++. ...--=...++.|...+.+.++.+|+.+..+|..+..
T Consensus 99 ~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 222 227889999999888999999999998888644110 0000000256778888888899999999999988876
Q ss_pred CCch--hhc----chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 021317 248 TPQE--KRL----SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTR 298 (314)
Q Consensus 248 ~~~~--~~~----~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~ 298 (314)
.... ..+ ....++.+...+ .+.....++.|..+|..+.+.--++.+..
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l---~D~~~~VR~aA~~~l~~i~~~vG~~~~~p 229 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIV---NDTQPAIRTIGFESFAILIKIFGMNTFVK 229 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHHCSGGGHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 5432 111 123444444444 36668899999999999886554444443
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.92 E-value=0.00037 Score=70.20 Aligned_cols=246 Identities=13% Similarity=0.137 Sum_probs=170.7
Q ss_pred HHHHHHhH-hhccCch--hHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHhhcCcHHHHHHHhcc
Q 021317 26 RLNLMGPL-WQLSKTR--NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS 101 (314)
Q Consensus 26 ~~a~~al~-l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~l~~Lv~lL~~ 101 (314)
+.|+.++. ++..... .-..+. .+.+|.++..+.+....++..|..++..+... +.... ...+|.|+..|.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhcc
Confidence 66676666 4433221 112222 15678888888777888998887777776542 22111 4568999999977
Q ss_pred C-CHHHHHHHHHHHHHhcCCCCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317 102 G-SVQGRVDAVTALHYLSTCKENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 178 (314)
Q Consensus 102 ~-~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~ 178 (314)
. ....+..|+.+|..|+... ...+.. ...+|.+.+.+.+..+ ++...|..++..+|..-+|+..- ..||
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~--~v~~~~~~~~~~~~~~~~n~d~~----~~~~ 216 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKK--EVKAAATAAMTKATETVDNKDIE----RFIP 216 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHGGGCCCTTTG----GGHH
T ss_pred ccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcH--HHHHHHHHHHHHHHhcCCCcchh----hhHH
Confidence 6 5789999999999999654 344443 5688999999988655 88889999999888877776433 4789
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchh
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS 257 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~ 257 (314)
.|+..+.+.+. ...+...|..-++...-+. .-.+ .+|.|.+-++..+..+++.++-++.|+|+--.++....-
T Consensus 217 ~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~ 290 (986)
T 2iw3_A 217 SLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAP 290 (986)
T ss_dssp HHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhh
Confidence 99999987643 4556767666655432100 1111 356666667778899999999999999986665566677
Q ss_pred hhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHH
Q 021317 258 VLEKIVYDIAAR--VDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 258 ~~~~lv~~l~~~--~~~~~~~~~~A~~~L~~l~~~ 290 (314)
+++.|++.+..- .-..+++++.|.+++.-|.+.
T Consensus 291 f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 291 FLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 788777777632 334688999999998888653
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.84 E-value=0.00025 Score=62.24 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=127.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-hccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhh-h
Q 021317 52 PPLVELLKFQNGTLRELAAAAILT-LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL-D 129 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~ 129 (314)
..+++.|.+.+...+..++.-|.. ++.+.+....+++.+|+..|++....++...+..++.+|.+|-...+.-.-++ .
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 356677777777777777777777 55567788889999999999999999999999999999999998766665565 4
Q ss_pred cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh-hhhHHHhc-------cC--CHHHHHHHhh---cCCHHHHHHHH
Q 021317 130 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNS-------DG--GILTLVETVE---DGSLVSTQHAV 196 (314)
Q Consensus 130 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~-------~g--~v~~Lv~ll~---~~~~~~~~~A~ 196 (314)
...|..+..++.+. ...+...|+.+|..++...+ +...+... .| -.+.|+.+|. +++..++.+|.
T Consensus 201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 56888888888853 45888999999999887754 33332211 11 2679999997 56788888877
Q ss_pred HHHHHhhccCc-HHHHHHHH---HcCChH-HHHHhhhcC--CHHHHH
Q 021317 197 GALLSLCQSCR-DKYRQLIL---KEGAIP-GLLRLTVEG--TFEAQE 236 (314)
Q Consensus 197 ~~L~~L~~~~~-~~~~~~i~---~~g~v~-~Lv~ll~~~--~~~~~~ 236 (314)
..+-.+-...+ .+.+..+. +.-++. .+.++++.. ++..++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 76644433322 23233333 223344 444455543 445544
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.75 E-value=0.00074 Score=62.19 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=143.7
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHhccCCCChhHHhhcC--cHHHHHHHhcc---------------C--CHHHHHHHHHH
Q 021317 54 LVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASG--AAPLLVQILHS---------------G--SVQGRVDAVTA 113 (314)
Q Consensus 54 Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~l~~Lv~lL~~---------------~--~~~~~~~a~~~ 113 (314)
++..|++. +.+.+.-++.+|..|...++.|..+.+.+ .+|+++..+.. + ...++-+++.+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 55556553 45556678889999999889998887554 36777655431 1 24567889999
Q ss_pred HHHhcCCCCCchhhhhcCCc--HHHHHHhhccCCchHHHHHHHHHHHHhcCChh-h----hhHHHhccCCHHHHHHHhhc
Q 021317 114 LHYLSTCKENSSPILDATAV--PPLINLLKDCKKYSKFAEKATALLEILSSSEE-G----RIAITNSDGGILTLVETVED 186 (314)
Q Consensus 114 L~nLs~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~----~~~i~~~~g~v~~Lv~ll~~ 186 (314)
++-|+..++....+...+.. +.|+++++.... +++.+-+++++.|+..... . ...++...++ +.++..|..
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~K-EKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIK-EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 99999998877777766643 677788887543 4888999999999987641 1 1222212233 556666654
Q ss_pred ---CCHHHHHHHHHH-------HHHhhccCcHHHHHHH----------------HHc----------CChHHHHHhhhc-
Q 021317 187 ---GSLVSTQHAVGA-------LLSLCQSCRDKYRQLI----------------LKE----------GAIPGLLRLTVE- 229 (314)
Q Consensus 187 ---~~~~~~~~A~~~-------L~~L~~~~~~~~~~~i----------------~~~----------g~v~~Lv~ll~~- 229 (314)
.++++.+.--.. ...++.. ++++.++ +.+ ..++.|++++.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsf--DeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSF--DEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 344443322111 1222211 1223222 221 356788888873
Q ss_pred ---------CCHHHHHHHHHHHHHhhcCC-chh-hc-chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 230 ---------GTFEAQERARTLLDLLRDTP-QEK-RL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 230 ---------~~~~~~~~A~~~L~~l~~~~-~~~-~~-~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.++.+..-|+-=+..+.++. +++ .+ +.|+-+.+ ..|. .+.+++.+.+|-.+++.+..++
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V-M~Lm--~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI-MELL--NHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH-HHHT--SCSSHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH-HHHh--cCCCHHHHHHHHHHHHHHHHhc
Confidence 25666667777777777544 433 22 35665544 4444 2446899999999999988764
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.72 E-value=0.00015 Score=64.98 Aligned_cols=256 Identities=9% Similarity=-0.015 Sum_probs=138.0
Q ss_pred eccccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHH
Q 021317 15 FMETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL 94 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~ 94 (314)
....++|...++-.-..+......++. .+ =++..|.+=++++++-++-.|+++|+++...+- - ....++
T Consensus 75 kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~-----~~l~~~ 143 (355)
T 3tjz_B 75 KLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-L-----QAIERY 143 (355)
T ss_dssp GGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-H-----HHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-H-----HHHHHH
Confidence 356777888888777777633332211 11 335667788888999999999999999954321 1 234566
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD 174 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 174 (314)
+-+.|.+.++.++..|+-+...|....+ + +++ +.++.+-+++.+.++ .++.+|+++|..+...+. .
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v~-~~~~~l~~ll~d~n~--~V~~~Al~lL~ei~~~d~--~------ 209 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSF--D-VVK-RWVNEAQEAASSDNI--MVQYHALGLLYHVRKNDR--L------ 209 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCH--H-HHH-TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCH--H------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCH--H-HHH-HHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhhch--H------
Confidence 7778889999999999999999884432 1 232 588888888877644 677899999998876431 1
Q ss_pred CCHHHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317 175 GGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 175 g~v~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
.+..++..+..+ ++-.+-.-+..+..++..+.++ .....++.|...+++.++.+.-.|+.++..+...+..
T Consensus 210 -a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 210 -AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp -HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 334455555443 3444444444444444332001 1234567777788889999999999999888663332
Q ss_pred hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCCC
Q 021317 252 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI 311 (314)
Q Consensus 252 ~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~~~~~~~ 311 (314)
.. ..++..+...+. ..+...+--|.+.|..++...|+ .+++-+..++.-|
T Consensus 284 -~~-~~a~~~L~~fLs---s~d~niryvaLr~L~~l~~~~P~-----~v~~~n~~ie~li 333 (355)
T 3tjz_B 284 -EL-APAVSVLQLFCS---SPKAALRYAAVRTLNKVAMKHPS-----AVTACNLDLENLV 333 (355)
T ss_dssp ------CCCTHHHHHH---SSSSSSHHHHHHCC---------------------------
T ss_pred -HH-HHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHc
Confidence 22 222333333343 23356788888888888765433 3444454444433
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.69 E-value=0.0072 Score=60.45 Aligned_cols=230 Identities=14% Similarity=0.020 Sum_probs=144.3
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL 95 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~L 95 (314)
+..++...++.|..++.+..-...|... +..|+..+ ...+..++..++..|+.+.. .+...++.+
T Consensus 481 L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~l 546 (963)
T 4ady_A 481 LYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDL 546 (963)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHH
T ss_pred HhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHH
Confidence 3344444455555555533222222222 34556554 34577888888888887643 345677888
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317 96 VQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD 174 (314)
Q Consensus 96 v~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 174 (314)
++.|.. .++-+|..++.++.--.....| ..+|+.|+..+.++.. ..++..|.-.|..+....+
T Consensus 547 i~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~--------- 610 (963)
T 4ady_A 547 ITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDY--------- 610 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSC---------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCH---------
Confidence 888864 6888888888777654433323 2356777777766433 3677788887877655432
Q ss_pred CCHHHHHHHh-hcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhh
Q 021317 175 GGILTLVETV-EDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 253 (314)
Q Consensus 175 g~v~~Lv~ll-~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 253 (314)
..++.++.+| ++.++.+|..|..+|..++.+++. . .++..|..+..+.++.++..|+.+|..+.....+..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~ 682 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL 682 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcccc
Confidence 3566777755 467899999999999999987652 1 256777788889999999999999999876554321
Q ss_pred --cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317 254 --LSSSVLEKIVYDIAARVDGADKAAETAKRLLQ 285 (314)
Q Consensus 254 --~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~ 285 (314)
....+++.+...+.. ...+..++-.|+-++.
T Consensus 683 ~~rva~~l~~L~~~~~d-k~~d~~~~fga~iAqG 715 (963)
T 4ady_A 683 NPQVADINKNFLSVITN-KHQEGLAKFGACVAQG 715 (963)
T ss_dssp CTTHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH
Confidence 224455545444431 1122445544444443
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.64 E-value=0.0072 Score=48.42 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=102.2
Q ss_pred hcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhh
Q 021317 88 ASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG 166 (314)
Q Consensus 88 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 166 (314)
+...++.++.+|+++-..++.+|+.+|.+++. .++....++ ..|+-+++.+.. -++......++.-++. .
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEa-IpltqeIa~a~G~la~---i 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEA-IPLTQEIAKAFGQMAK---E 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCS-HHHHHHHHHHHHHHHH---H
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhccc-CchHHHHHHHHhHHHH---h
Confidence 56789999999999999999999999999984 343333222 223333333211 1222222222222221 1
Q ss_pred hhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH------------------------------
Q 021317 167 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------------------------------ 216 (314)
Q Consensus 167 ~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~------------------------------ 216 (314)
+-.++ .+.||.+..-..-++++++-+...+|..++..+|. ....+++
T Consensus 101 ~Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~ 177 (253)
T 2db0_A 101 KPELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK 177 (253)
T ss_dssp CHHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH
T ss_pred CHHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc
Confidence 11222 12333333333333444433333333333332221 0000000
Q ss_pred --cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 217 --EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 217 --~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
.-.+|.|..++.+++.-++..|+.+|.+++.-++. +... +...+....|.++..+.+.+..|..+.-
T Consensus 178 yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRki----i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKV----VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHH----HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 13678899999999999999999999999876642 2222 2222344457788899999999988874
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.50 E-value=0.00054 Score=61.31 Aligned_cols=207 Identities=11% Similarity=-0.047 Sum_probs=122.8
Q ss_pred cccCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 17 ETYFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 17 l~~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
++++|+-++-.|++++...... +.-. ...+.+.+.|.+.++.++..|+-+...|... +.+.+ .++++.+-
T Consensus 113 l~~~N~~iR~lALRtL~~I~~~-~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v--~~~~~~l~ 182 (355)
T 3tjz_B 113 MTGKEDSYRGPAVRALCQITDS-TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVV--KRWVNEAQ 182 (355)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCT-TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHH--HTTHHHHH
T ss_pred cCCCcHhHHHHHHHHHhcCCCH-HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHH
Confidence 4567888899999988844432 2222 2346688888999999999999998887643 22333 37899999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCC-chHHHHHHHHHHHHhcCChhhhhHHHhccC
Q 021317 97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK-YSKFAEKATALLEILSSSEEGRIAITNSDG 175 (314)
Q Consensus 97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 175 (314)
+++.+.++.+..+|+.+|..+...+. .++..|+.-+..+.. .+-.+..-+.++..++..++.. . ...
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~-~~~ 250 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---R-DSP 250 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred HHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---h-HHH
Confidence 99999999999999999999986541 144555666555321 1111122233333333322111 1 234
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
.++.+..+|++.++.+.-.|+.++..+..... . .. ..++..|..++.+.++.+|-.|...|..+....++
T Consensus 251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~-~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSA-K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 56677777888899999999999988875321 1 11 34577788888899999999999988888765443
No 85
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.04 E-value=0.005 Score=51.82 Aligned_cols=173 Identities=15% Similarity=0.092 Sum_probs=121.1
Q ss_pred HHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCC-----HHHHHHHHHHHHHhccCCCC--hhHHhhcCcHHHHHH
Q 021317 25 RRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQ 97 (314)
Q Consensus 25 ~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~--~~~i~~~g~l~~Lv~ 97 (314)
...|+.-+.-.+.+++.|..+.++...-.|..+|...+ +-+|..++.+++.|...++. -..+.+.+.+|..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 34444444544468999999999999888889996442 45788889999999986543 333347899999999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCCchhhhh--------cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 98 ILHSGSVQGRVDAVTALHYLSTCKENSSPILD--------ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 98 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
.++.+++-.+..|..++..+-.++.+...+-. ..++..++.-+.. .+.+++.....++..-|+.++..|..
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~-~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK-EPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT-SCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999877765554443 1234444444433 34558889999999999999888877
Q ss_pred HHhccCCHH------HHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 170 ITNSDGGIL------TLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 170 i~~~~g~v~------~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
+-. ++| .+-.+++ +++..+.+-...+.|+
T Consensus 232 L~~---~LP~~Lrd~tf~~~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 232 LRQ---CLPDQLKDTTFAQVLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH---HSCGGGTSSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred HHH---hCcHHhhChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 752 222 1222232 4566666666666655
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.088 Score=42.23 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=133.1
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCc
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGA 91 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~ 91 (314)
+.+|..+-..+|..|+..+. .+..-++-...+.+ .|+.+++ ++.-.....-+++++.++... ..++ .+.
T Consensus 38 I~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~v-~~v 108 (253)
T 2db0_A 38 IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PELV-KSM 108 (253)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHHH-HHH
T ss_pred HHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhC---HHHH-Hhh
Confidence 45566666778999988888 66666666555543 4666664 556666566678888887521 1111 234
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhc-CCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHH
Q 021317 92 APLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 170 (314)
Q Consensus 92 l~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i 170 (314)
+|.+..=.+-+++..+.+-..+|..++ .+|..-. +++..+..++.+.+.. + +-.|+..+ +.-.++.-.-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~-D-kl~aLnFi---~alGen~~~y 178 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNRE-D-KLTALNFI---EAMGENSFKY 178 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHH-H-HHHHHHHH---HTCCTTTHHH
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChH-H-HHHHHHHH---HHHhccCccc
Confidence 455555556689999999999999888 4443222 3445567777765432 2 23344444 4444455455
Q ss_pred HhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 021317 171 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 171 ~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
+ .-.+|.|..+|.+++.-++..|..+|.+++..++ +.|..+. .-++=+.+.+.-+++.....|..+.
T Consensus 179 v--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-klRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 179 V--NPFLPRIINLLHDGDEIVRASAVEALVHLATLND-KLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp H--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-HHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred c--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-HHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4 3489999999999999999999999999999875 5665443 2334445666777766666665553
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.96 E-value=0.017 Score=58.31 Aligned_cols=223 Identities=15% Similarity=0.148 Sum_probs=144.3
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChh--HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS 125 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~ 125 (314)
++++.|.+.+.+.... +.|+.++..|+....... .-.--+.+|.++..+.+....++..|-.++..+... +...
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a- 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA- 130 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-
Confidence 4566677777654333 889999999986532211 111125788888888888899998888888777632 2221
Q ss_pred hhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 021317 126 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 126 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~ 205 (314)
+ ...+|.|++.|.+...| +.+..|+.++..|+......-... =...||.+-..+.+..++++..|..+|..+|..
T Consensus 131 -~--~~~~~~~~~~~~~~~kw-~~k~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 131 -I--KALLPHLTNAIVETNKW-QEKIAILAAFSAMVDAAKDQVALR-MPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp -H--HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHSHHHHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred -H--HHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhHHHHHHh-ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 1 45789999999876666 667889999999886532222111 245788888888888899999999999999974
Q ss_pred CcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 021317 206 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR-VDGADKAAETAKRLL 284 (314)
Q Consensus 206 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~-~~~~~~~~~~A~~~L 284 (314)
-.+ ++. ...+|.|++.+.+.+. + -.++..|+.-.--..+..-.+--+++.|... ...+...+++++-+.
T Consensus 206 ~~n--~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 206 VDN--KDI---ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp CCC--TTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CCC--cch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEE
Confidence 322 111 2478889988876633 2 2345666543321223333333344444322 233456678888888
Q ss_pred HHHHH
Q 021317 285 QDMVQ 289 (314)
Q Consensus 285 ~~l~~ 289 (314)
.||.+
T Consensus 276 ~n~~~ 280 (986)
T 2iw3_A 276 DNMCK 280 (986)
T ss_dssp HHHHT
T ss_pred cchhh
Confidence 88875
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.86 E-value=0.0096 Score=55.78 Aligned_cols=237 Identities=16% Similarity=0.126 Sum_probs=146.1
Q ss_pred eeccccCCHHHHHHHHHHhH-hhccCchhHHHHHhc--CCcHHHHHHh--cC------C--CHHHHHHHHHHHHHhccCC
Q 021317 14 VFMETYFEGYARRLNLMGPL-WQLSKTRNKVKIATA--GAIPPLVELL--KF------Q--NGTLRELAAAAILTLSAAA 80 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~--g~v~~Lv~lL--~~------~--~~~~~~~a~~~L~~La~~~ 80 (314)
+..|-++..++|--|..+|. +...+.......... +..-.|+.++ +. + -..+|+.++.+|+.+ .+-
T Consensus 180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL 258 (800)
T 3oc3_A 180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL 258 (800)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT
T ss_pred HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC
Confidence 44567789999999999998 554443211100111 2222333333 11 1 246899999999999 642
Q ss_pred CChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 81 PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 81 ~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
+.. ..++..++..+..+.-+++..++-.|..+ ++.+.+ .++++.++..|++.++ +++..|+.+|.-
T Consensus 259 p~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DD--DVRAVAAetLiP 325 (800)
T 3oc3_A 259 IGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDE--DIKLLSAELLCH 325 (800)
T ss_dssp SCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSH--HHHHHHHHHHTT
T ss_pred Chh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCccc--HHHHHHHHHhhh
Confidence 221 45566777777788899999999999999 222222 4567777788887644 888888888887
Q ss_pred hcCChhhhhHHHhccCCHHHHHHHhhcCC--HHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 021317 160 LSSSEEGRIAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER 237 (314)
Q Consensus 160 L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~--~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~ 237 (314)
++ .++.. ...+..+-..|.+.+ ..-.......|+.|+..+.. .-.....+|.|-.++++.-+.+|..
T Consensus 326 IA-~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 326 FP-ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp SC-CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hc-chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHHHHHhhhcCCcHHHHHH
Confidence 77 11111 113334444444321 22234556677777766521 1112368999999999999999999
Q ss_pred HHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 021317 238 ARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ 285 (314)
Q Consensus 238 A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~ 285 (314)
...+|..+. ...+++-+.+.+. ....++..+.+..+.+
T Consensus 395 VL~TL~tfL--------~~~~LRLIFQNIL--LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--------EESIDFLVAEVVL--IEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--------CHHHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------hhhHHHHHHHHHH--hCCcHHHHHHHHHHHH
Confidence 999887765 2234444444444 3445777777777664
No 89
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.72 E-value=0.03 Score=47.11 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHhH-hhccCchhHHHHH-hcCCcHHHHHHh-------cCC--CHH--HH-HHHHHHHHHhccCCCChhH
Q 021317 20 FEGYARRLNLMGPL-WQLSKTRNKVKIA-TAGAIPPLVELL-------KFQ--NGT--LR-ELAAAAILTLSAAAPNKPA 85 (314)
Q Consensus 20 ~~~~~~~~a~~al~-l~~~~~~~~~~l~-~~g~v~~Lv~lL-------~~~--~~~--~~-~~a~~~L~~La~~~~~~~~ 85 (314)
-+++.|+.|+..|. .-...++---.+- ..|.+..|++=. ..+ +.. -| -+|+..|..+|.+++.|..
T Consensus 13 ~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~ 92 (268)
T 2fv2_A 13 SSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSA 92 (268)
T ss_dssp SSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred cCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhH
Confidence 35667999988887 3333333333333 457777775533 222 111 22 3455566778999999999
Q ss_pred HhhcCcHHHHHHHhccCC-----HHHHHHHHHHHHHhcCCCC--CchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317 86 IAASGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158 (314)
Q Consensus 86 i~~~g~l~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~ 158 (314)
+.+++.--.|-..|+..+ +.+|-.++++++.|...++ ....+.+.+++|..++.++.|++ --+.-|+-++.
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gse--lSKtvAtfIlq 170 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSE--LSKTVATFILQ 170 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCH--HHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccH--HHHHHHHHHHH
Confidence 999887666666676543 5788999999999995543 44556678999999999999876 33445777777
Q ss_pred HhcCChhhhhHHHhccCC-------HHHHHHH-hhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH------
Q 021317 159 ILSSSEEGRIAITNSDGG-------ILTLVET-VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL------ 224 (314)
Q Consensus 159 ~L~~~~~~~~~i~~~~g~-------v~~Lv~l-l~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv------ 224 (314)
.+-.++.+-..+.....- +..++.- .++.++.+.....++-.-|+.+. ..|+++.. .+|.-+
T Consensus 171 KIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~--rar~aL~~--~LP~~Lrd~tf~ 246 (268)
T 2fv2_A 171 KILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP--RAREALRQ--CLPDQLKDTTFA 246 (268)
T ss_dssp HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH--HHHHHHHH--HSCGGGTSSTTH
T ss_pred HHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH--HHHHHHHH--hCcHHhhChHHH
Confidence 777776665555432222 2222222 24567888899999999999764 56777765 122111
Q ss_pred HhhhcCCHHHHHHHHHHHHHh
Q 021317 225 RLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l 245 (314)
.++ .+|+..++.=..++.|+
T Consensus 247 ~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 247 QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHH-hcCHHHHHHHHHHHHhc
Confidence 122 25676666555566554
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.061 Score=46.06 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=116.2
Q ss_pred eccccCCHHHHHHHHHHhH-hhccCchh--HHHHH-hc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC---CC-hhH
Q 021317 15 FMETYFEGYARRLNLMGPL-WQLSKTRN--KVKIA-TA-GAIPPLVELLKFQNGTLRELAAAAILTLSAAA---PN-KPA 85 (314)
Q Consensus 15 ~~l~~~~~~~~~~a~~al~-l~~~~~~~--~~~l~-~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~---~~-~~~ 85 (314)
.-|.+.+...|..|+..+. .+...+.. ..... .- ...+.+-..+.+.+..+...++.++..++..- .. +..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 5688999999999999988 55433221 11111 12 33456667888889999999999998887531 11 221
Q ss_pred --HhhcCcHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317 86 --IAASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162 (314)
Q Consensus 86 --i~~~g~l~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~ 162 (314)
..-...+|.|+.- |.++.+.++..+..++..+......... .++.++..+.+.+ ++++..++.+|..+..
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Kn--pkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKL--PKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSC--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccC--HHHHHHHHHHHHHHHH
Confidence 1234567777764 6788899999999988877643322222 2344555555543 4788888877776543
Q ss_pred Chh----hhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 163 SEE----GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 163 ~~~----~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
... +....+ ..+++.+..++.+.++.+|..|..++..+-..-
T Consensus 169 ~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 211 111112 125567888889999999999999998887653
No 91
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.36 E-value=0.02 Score=50.02 Aligned_cols=188 Identities=12% Similarity=0.031 Sum_probs=108.1
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH----HHhcc-CCHHHHHHHHHHHHHhcCCCCCch
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV----QILHS-GSVQGRVDAVTALHYLSTCKENSS 125 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv----~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~ 125 (314)
+..+..++ +...+.+.-++..++-+..++.....+.+.+.-..++ ..+.+ +.+..+--+++++.|+..++..+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 34555555 4455556666666666665544444443332223333 33332 356678899999999999888877
Q ss_pred hhhhc--CCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 021317 126 PILDA--TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSL 202 (314)
Q Consensus 126 ~i~~~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~L 202 (314)
.+... .+++.+...+.+ .+..++..+.+++.|++...-.....-.....+..+..++.. .+.+....++.+|.+|
T Consensus 184 ~l~~~~~~il~~~~~~~~~--~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSG--SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSS--CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 77652 234444444333 244777788888999887522111110011133344444543 4678888999999999
Q ss_pred hccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHH
Q 021317 203 CQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLL 242 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L 242 (314)
...++ +.++....-|+-..+-++... ..+++.+.|..++
T Consensus 262 ~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 262 ISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 97653 444444445554444455544 3567777666555
No 92
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.28 E-value=0.024 Score=47.93 Aligned_cols=18 Identities=11% Similarity=-0.306 Sum_probs=13.4
Q ss_pred eeccccCCHHHHHHHHHH
Q 021317 14 VFMETYFEGYARRLNLMG 31 (314)
Q Consensus 14 v~~l~~~~~~~~~~a~~a 31 (314)
-.++.+++++++..+...
T Consensus 56 ~~ll~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRY 73 (244)
T ss_dssp GGGTTCSSHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHh
Confidence 356678888888888865
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.08 E-value=0.14 Score=51.87 Aligned_cols=220 Identities=13% Similarity=0.061 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHhH-hhccCchhHHHHHhc-----CCcHH----HHHHhcCC---CHHHHHHHHHHHHHhccCCCChhH
Q 021317 19 YFEGYARRLNLMGPL-WQLSKTRNKVKIATA-----GAIPP----LVELLKFQ---NGTLRELAAAAILTLSAAAPNKPA 85 (314)
Q Consensus 19 ~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~-----g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~ 85 (314)
+++...++.|+.++. ++......... ... ...+. ++..|.++ ++-+|..|+++++.++..- ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 566788999999888 54322111000 000 11222 33344555 8899999999999998752 122
Q ss_pred HhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC---------Cchhhhh--cCCcHHHHHHhhccCCc-hH--HHH
Q 021317 86 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE---------NSSPILD--ATAVPPLINLLKDCKKY-SK--FAE 151 (314)
Q Consensus 86 i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---------~~~~i~~--~g~i~~Lv~lL~~~~~~-~~--~~~ 151 (314)
.-...++.+++.|.++++.++..|+.+|.+++...+ .+..+.. ...++.|+.++...... .+ ..+
T Consensus 493 -~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 -QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 124567888888888899999999999999986421 2333433 34666666777664100 00 112
Q ss_pred HHHHHHHHhcCC--hhhhhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH
Q 021317 152 KATALLEILSSS--EEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 224 (314)
Q Consensus 152 ~a~~~L~~L~~~--~~~~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv 224 (314)
.++.++..++.. .+... .. ...++.|...+.. .++..+..++.++..++.....+.... .....+|.+.
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~ 647 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-LF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-HH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHH
Confidence 344444433221 11111 11 1244455555532 345666778888888876522121222 2234567777
Q ss_pred HhhhcCCHHHHHHHHHHHHHhh
Q 021317 225 RLTVEGTFEAQERARTLLDLLR 246 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l~ 246 (314)
..+........+.+..++..+.
T Consensus 648 ~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 648 TVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhhhHhhHHHHHHHHHHHH
Confidence 7776655556666666665554
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.96 E-value=0.16 Score=51.38 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=117.9
Q ss_pred HHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhc-----CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 23 YARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLK-----FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 23 ~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
.++..++.++. ++...++.-... -...++..+..+. ..+..+...++..+..++..+..+..+.....++.++
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li 339 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence 45666677766 444333211111 1233455555553 2356778888888888765433332222224455555
Q ss_pred H-H----hc----c-----CC--------------HHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc----cC
Q 021317 97 Q-I----LH----S-----GS--------------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD----CK 144 (314)
Q Consensus 97 ~-l----L~----~-----~~--------------~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~----~~ 144 (314)
+ + +. + ++ ...|..|..+|..|+..-. ..+.. -.++.+...+.. ++
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~ 416 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPS 416 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC---
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcc
Confidence 2 2 11 0 11 1346667777777774422 12211 122333333441 12
Q ss_pred CchHHHHHHHHHHHHhcCChhhhhHHHh----ccCCH----HHHHHHhhcC---CHHHHHHHHHHHHHhhccCcHHHHHH
Q 021317 145 KYSKFAEKATALLEILSSSEEGRIAITN----SDGGI----LTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQL 213 (314)
Q Consensus 145 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~----~~g~v----~~Lv~ll~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~ 213 (314)
.+...++.|+.++..++........-.. ..... ..++..+.+. ++-+|..|++++..++..-+. +.
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---~~ 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---AQ 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---HH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---HH
Confidence 2336788999999888753211110000 00111 2334445655 789999999999999875332 22
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 214 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 214 i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+ ...++.+++.+.+.++.++.+|+.+|.+++..
T Consensus 494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 2 23577788888888899999999999999874
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.3 Score=41.60 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=109.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCC---Cchhhh-hcC-CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChh---h
Q 021317 95 LVQILHSGSVQGRVDAVTALHYLSTCKE---NSSPIL-DAT-AVPPLINLLKDCKKYSKFAEKATALLEILSSSEE---G 166 (314)
Q Consensus 95 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---~~~~i~-~~g-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~---~ 166 (314)
+-+-|.+.+-..|..++..|..+..... ...... ..+ ..+.+-..+.+.+ ..+...++.++..++.... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--VVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--HHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHhhhhhc
Confidence 5577889999999999999888764321 111112 122 4455556676654 4788888888887765311 1
Q ss_pred -hhH--HHhccCCHHHHHH-HhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317 167 -RIA--ITNSDGGILTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 242 (314)
Q Consensus 167 -~~~--i~~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 242 (314)
+.. .. -...++.|+. .+.+....++..|..++..++..... ... .++.++..+.+.+|.++..+...|
T Consensus 92 ~~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~-----~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 92 KNAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQ-----SVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp CHHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHH-----HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred ccchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHH-----HHHHHHHHHhccCHHHHHHHHHHH
Confidence 111 11 1345677765 46677788999999888877654311 111 345667778889999999988777
Q ss_pred HHhhc-CCchhhcc-----hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 243 DLLRD-TPQEKRLS-----SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 243 ~~l~~-~~~~~~~~-----~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
..+-. .... ... ..+++.+...+ .+.+..+|+.|..++..+-+
T Consensus 164 ~~~l~~fg~~-~~~~k~~l~~i~~~l~k~l---~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 164 YELMAAFGLT-NVNVQTFLPELLKHVPQLA---GHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHTTT-TCCHHHHHHHHGGGHHHHH---TCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-cCCchhHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHHH
Confidence 76543 2211 111 11233333333 36678899999988876653
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.52 E-value=0.2 Score=42.72 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=113.2
Q ss_pred ccccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCc-HHHHHHhcCCCHHHHHHHHHHHHHhcc---CCCChhHHhh-c
Q 021317 16 METYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAI-PPLVELLKFQNGTLRELAAAAILTLSA---AAPNKPAIAA-S 89 (314)
Q Consensus 16 ~l~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v-~~Lv~lL~~~~~~~~~~a~~~L~~La~---~~~~~~~i~~-~ 89 (314)
.+-+.|...+.+|+..|. ....+++ ..+...+.+ +-+.-.+.+.+..+...++.+|..+.. ..+.+-.-.+ .
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 344557778888888877 4433322 222222221 111112235688888888887777643 1121111111 3
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhH
Q 021317 90 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 169 (314)
Q Consensus 90 g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 169 (314)
-.+|.|+.-+-++.+.+|..+-.+|..+..-. --....+.+++-+++.+ .+.++.++..+..+-......
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN--~R~R~e~l~~l~~li~~~G~~-- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGIS-- 201 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHHCSG--
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHhcCCC--
Confidence 47899999998888999999888887775310 11235666777777754 377788887777654332111
Q ss_pred HHhccCCH---HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHH
Q 021317 170 ITNSDGGI---LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 214 (314)
Q Consensus 170 i~~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i 214 (314)
...++ +.+..++.+.+..+|..|+.++..+-....+.....+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 13467 9999999999999999999999877655433444333
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.37 E-value=1.3 Score=38.82 Aligned_cols=204 Identities=14% Similarity=0.113 Sum_probs=147.0
Q ss_pred HHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCchhhhh--cCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317 85 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 85 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 161 (314)
.+...+.+..|+..|..=+-+.|..+..+..++... .+++...++ .. =+.++..|-.|.+.+++.-.+...|....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 346679999999999999999999999999998854 344444433 12 35555555555555577778888899999
Q ss_pred CChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHc---CChHHHHHhhhcCCHHHHHHH
Q 021317 162 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERA 238 (314)
Q Consensus 162 ~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~---g~v~~Lv~ll~~~~~~~~~~A 238 (314)
.+....+.+. ..+.+-.+...+..++=++...|..++..|-.... .....+... -.....-+++.+++--+++.+
T Consensus 152 r~e~la~~iL-~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 152 RHEPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp TSHHHHHHHH-HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HhHHHHHHHh-ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 9988888888 67889999999999998898999999987755543 344455443 356677778999999999999
Q ss_pred HHHHHHhhcCCc--h---hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 021317 239 RTLLDLLRDTPQ--E---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL 294 (314)
Q Consensus 239 ~~~L~~l~~~~~--~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s~~~ 294 (314)
..+|..+--.+. . +.+...---.++..|. .+.+...+-.|=-+.+-+++ +|++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL--~d~sk~Iq~EAFhVFKvFVA-NP~K 287 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLL--RDKSRNIQFEAFHVFKVFVA-NPNK 287 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHH-CSSC
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHh--cCchhchhhhhhhheeeeee-CCCC
Confidence 999999865442 2 2222222223333333 57778899999999999996 4433
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.27 E-value=0.03 Score=47.28 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHHHhhcCCHHHHHHHHHHH-----HHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 021317 180 LVETVEDGSLVSTQHAVGAL-----LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL 241 (314)
Q Consensus 180 Lv~ll~~~~~~~~~~A~~~L-----~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~ 241 (314)
+..++++.+..++..++..+ ..+..+...++|..+...-..+.|..++.+.+..++..++..
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~ 217 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH 217 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHc
Confidence 33455566666666666542 122233333455555554445666667777777777666654
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.25 E-value=0.028 Score=52.69 Aligned_cols=185 Identities=12% Similarity=0.013 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHh-hcCcHHHHHHHhc
Q 021317 22 GYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILH 100 (314)
Q Consensus 22 ~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~~Lv~lL~ 100 (314)
..+||.+..+|..+..-++. ..++..++..+..+..+++..++-.|..+. ..+. =.++++.++..|.
T Consensus 242 APVRETaAQtLGaL~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSLLS 309 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhhcC
Confidence 56788888888822332222 334444444556778999999998998881 1111 2567888999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCC
Q 021317 101 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGG 176 (314)
Q Consensus 101 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~ 176 (314)
+.+.+++..|+.+|..++ .+ +.++.++..+ .+.++-..-....+.+|..|+..+.. ... ....
T Consensus 310 D~DDDVRAVAAetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~-dp~L 376 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSI-PPER 376 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCC-CSGG
T ss_pred CcccHHHHHHHHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--ccc-ChHH
Confidence 999999999999999988 22 2344444333 33221112234566777777776632 122 3578
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHH-hhhcCCHHHHHHHHHHHH
Q 021317 177 ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLD 243 (314)
Q Consensus 177 v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~-ll~~~~~~~~~~A~~~L~ 243 (314)
||.|..++++....+|..++.+|..+. ... .++.+-+ ++-..++.+++.+..+-.
T Consensus 377 VPRL~PFLRHtITSVR~AVL~TL~tfL--~~~----------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 377 LKDIFPCFTSPVPEVRTSILNMVKNLS--EES----------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH----------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh----------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999999998877 211 2333333 555677777777666553
No 100
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.19 E-value=0.14 Score=44.69 Aligned_cols=173 Identities=9% Similarity=-0.013 Sum_probs=100.7
Q ss_pred HHHHHHHHHhHhhccCchhHHHHHhcCCcHHHH----HHhcC-CCHHHHHHHHHHHHHhccCCCChhHHhhc--CcHHHH
Q 021317 23 YARRLNLMGPLWQLSKTRNKVKIATAGAIPPLV----ELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLL 95 (314)
Q Consensus 23 ~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv----~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~--g~l~~L 95 (314)
+.+.-++..++++.-++..-..+.+.+.-..++ ..+.+ ..+..+.-++++++|+-.++..+..+... ..++.+
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 445556665665555565555555433323333 33332 35667889999999999988777776642 344555
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhcc
Q 021317 96 VQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD 174 (314)
Q Consensus 96 v~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~ 174 (314)
...+.+++..++..++.++.|++..- ..+..=....++..+..+++.. .+.+....++-+|.+|...+.....+.+.-
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~~~~~~lak~l 275 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLISDDSNAVQLAKSL 275 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCChhHHHHHHHc
Confidence 55555678999999999999998421 1111000112444455555543 344677788888999887655555555334
Q ss_pred CCHHHHHHHhhc-CCHHHHHHHH
Q 021317 175 GGILTLVETVED-GSLVSTQHAV 196 (314)
Q Consensus 175 g~v~~Lv~ll~~-~~~~~~~~A~ 196 (314)
|.-..+-+..+. .+.++.+.|-
T Consensus 276 ~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 276 GVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp THHHHGGGGGGCCSSHHHHHHHH
T ss_pred CHHHHHHHHHhCCCchhHHHHHH
Confidence 433333333333 3455555443
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.85 E-value=0.53 Score=40.04 Aligned_cols=178 Identities=9% Similarity=0.103 Sum_probs=112.5
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHH----hccCCHHHHHHHHHHHHHhcCC-CCCch
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI----LHSGSVQGRVDAVTALHYLSTC-KENSS 125 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~l----L~~~~~~~~~~a~~~L~nLs~~-~~~~~ 125 (314)
=+.+...|.+.+...+..|+..|...... +...+. ..+..+.+. +.+.+..+...++..|..+... .+.-.
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566666666777777777777664321 111211 122223332 3477888888888888776421 11101
Q ss_pred hhhh---cCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 021317 126 PILD---ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 202 (314)
Q Consensus 126 ~i~~---~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L 202 (314)
.+.+ .-.+|.|++-+.+..+ .+++.+-.++..++.. ..-...++.++.-+++.+...++.++..+..+
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~--~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKD--NMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1221 2377888888876543 7777777777665432 11223455677788888999999999998887
Q ss_pred hccCcHHHHHHHHHcCCh---HHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 203 CQSCRDKYRQLILKEGAI---PGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 203 ~~~~~~~~~~~i~~~g~v---~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
-....- . ...++ +.+..++.+.+..+|..|..++-.+-.
T Consensus 195 i~~~G~--~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGI--S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCS--G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCC--C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 643211 1 23478 999999999999999999988876644
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.12 E-value=0.22 Score=50.90 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhccCC---chHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317 102 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKK---YSKFAEKATALLEILSSSEEGRIAITNSDGGI 177 (314)
Q Consensus 102 ~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v 177 (314)
.+...++.++++++.++...... ..-.=..+++.|+.++..... ...++..++.+++..+..-....... ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 46889999999999999654321 211113477888888864221 11233334455544443322222333 2355
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH------cCChHHHHH----hhhcCCHHHHHHHHHHHHHhhc
Q 021317 178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGLLR----LTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~------~g~v~~Lv~----ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
..|+..|.+.++.+++.|++++.+||... +..+.. ...++.+++ ....-++........++..+..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777776677899999999999999643 444542 123444443 3333466667777778888776
Q ss_pred CCc
Q 021317 248 TPQ 250 (314)
Q Consensus 248 ~~~ 250 (314)
..+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
No 103
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.00 E-value=0.8 Score=40.45 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=83.8
Q ss_pred HHHhccCCC-ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHH
Q 021317 73 ILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE 151 (314)
Q Consensus 73 L~~La~~~~-~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 151 (314)
|.||-.++. .-..+++..|+..+.....-++.++....+..|.-.+.....+..=. ...+|.++..+.-.. +.++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~-eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP-DDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC-CcceEE
Confidence 455555654 46678899999999999999999999999999888876543332211 357888888887643 448888
Q ss_pred HHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhc
Q 021317 152 KATALLEILSSSEEGRIAITNSDGGILTLVETVED 186 (314)
Q Consensus 152 ~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~ 186 (314)
..++.|+|+..+...-+.+.-..|+|+.|-..+..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 99999999999866544443368999998887753
No 104
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.95 E-value=0.5 Score=39.35 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=102.9
Q ss_pred HHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC----C-------CHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317 27 LNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF----Q-------NGTLRELAAAAILTLSAAAPNKPAIA-ASGAA 92 (314)
Q Consensus 27 ~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l 92 (314)
..+..|. .+..++..+ ..+ ..+|+..|+..|.. + +.+.+..++.+|..+..+..+...+. .++++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence 3455555 334444444 444 57888888888842 1 24566778889988877665555554 67889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhhh----------cCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPILD----------ATAVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
..++..|.++++.++..++..|.-+|..++ + ...+.+ ..-...+++.+.... ..++...++..+-.
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINA 177 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 999999999999999999999988885543 5 443332 235667888776533 34677777777766
Q ss_pred hcCChhh-------hhHHHhccCCHHHHHHHhhc-CCHHH
Q 021317 160 LSSSEEG-------RIAITNSDGGILTLVETVED-GSLVS 191 (314)
Q Consensus 160 L~~~~~~-------~~~i~~~~g~v~~Lv~ll~~-~~~~~ 191 (314)
+....+. |..+. ..| +..++.-++. +++.+
T Consensus 178 li~~~~dl~~R~~lR~ef~-~~G-l~~il~~l~~~~~~~L 215 (233)
T 2f31_A 178 LITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM 215 (233)
T ss_dssp HHTTCCCHHHHHHHHHHHH-HTT-HHHHHHHHHHCCCHHH
T ss_pred HHCCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhccCCHHH
Confidence 6655432 44444 344 4444454443 44443
No 105
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.87 E-value=3.5 Score=36.99 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred HHHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCCChhHHh-hcCcH
Q 021317 27 LNLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAPNKPAIA-ASGAA 92 (314)
Q Consensus 27 ~a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l 92 (314)
+.+..|. .+...+..+ ..++ .+|+..|+.+|.. .+...+..++.+|..+..+..+...+. ...++
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 3455666 334444444 4554 6788999998841 134667788889998877765555554 67899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhh----------hcCCcHHHHHHhhccCCchHHHHHHHHHHHH
Q 021317 93 PLLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPIL----------DATAVPPLINLLKDCKKYSKFAEKATALLEI 159 (314)
Q Consensus 93 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 159 (314)
..++..|.+.++.++..++..|.-+|..++ + ...+. +..-...++..+.... ..++...++..+-.
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~-~~e~~~~~m~lIN~ 243 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINA 243 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccC-cHHHHHHHHHHHHH
Confidence 999999999999999999999999885543 4 33333 2356788888887743 34777778887776
Q ss_pred hcCChhh-------hhHHHhccCCHHHHHHHhhcC-CHHH
Q 021317 160 LSSSEEG-------RIAITNSDGGILTLVETVEDG-SLVS 191 (314)
Q Consensus 160 L~~~~~~-------~~~i~~~~g~v~~Lv~ll~~~-~~~~ 191 (314)
+....+. |..+. ..| +..++.-|+.. ++.+
T Consensus 244 li~~~~dl~~R~~lR~ef~-~~G-l~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 244 LITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM 281 (383)
T ss_dssp HHTTCCCHHHHHHHHHHHH-HTT-HHHHHHHHTTSCCHHH
T ss_pred HHcCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhcCCChhH
Confidence 6665332 44444 354 44445556543 4443
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.70 E-value=1.5 Score=44.17 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh---c--cCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcH
Q 021317 61 QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL---H--SGSVQGRVDAVTALHYLSTC-KENSSPILDATAVP 134 (314)
Q Consensus 61 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL---~--~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~ 134 (314)
.+...++.++.+++.++..-.... ...++.++.++ . ++++.++..++++|..++.. ..+...+- .+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHH
Confidence 456678889999999876422111 23445555544 2 35899999999999998842 22222111 2456
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhcC--CHHHHHHHHHHHHHhhcc
Q 021317 135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVEDG--SLVSTQHAVGALLSLCQS 205 (314)
Q Consensus 135 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~L~~~ 205 (314)
.|+..| + + .+...|+.++.+++.. .+..+.. -...+..+..++..+ +...+..+..++..++..
T Consensus 550 ~l~~~l-~--~--~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGL-N--S--SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH-H--S--SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-C--h--HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 666666 2 2 5678899999999843 2333321 123555666777663 467888888888888754
No 107
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.60 E-value=0.33 Score=40.44 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHH----------H
Q 021317 148 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLIL----------K 216 (314)
Q Consensus 148 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~----------~ 216 (314)
.....++.+|..+..+..+...+..+.+.+..+...|.+.++.++..++..|..+|..+.+++ ...+. +
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 556778899999999998888888778889999999988889999999999998887643112 22222 2
Q ss_pred cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCch
Q 021317 217 EGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 217 ~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
..-...+++.++. .+.+.+..+...+..+..++++
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~d 184 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 184 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCC
Confidence 2356667776663 4566777777777777776643
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.38 E-value=0.55 Score=42.30 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=91.8
Q ss_pred hhhhhcCCcHHHHHHhhcc---------CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHH
Q 021317 125 SPILDATAVPPLINLLKDC---------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA 195 (314)
Q Consensus 125 ~~i~~~g~i~~Lv~lL~~~---------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A 195 (314)
..++ .+|+..|+++|..- ..+......++.+|..+..+..+...+..+...|..+...+.+..+.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 56788888888531 1223556778999999999999988888788999999999999999999999
Q ss_pred HHHHHHhhccCc-HHHHHHHHH----------cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCc
Q 021317 196 VGALLSLCQSCR-DKYRQLILK----------EGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQ 250 (314)
Q Consensus 196 ~~~L~~L~~~~~-~~~~~~i~~----------~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~~~~ 250 (314)
+..|..+|..+. ..+...+.+ ..-...++..++. .+...+..+...+..+..+++
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 999999997653 111233222 3457788887776 467777777778877877664
No 109
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.27 E-value=2.2 Score=38.35 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHH-HHHHH----------
Q 021317 147 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLIL---------- 215 (314)
Q Consensus 147 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~i~---------- 215 (314)
......++.+|..+..+..+...+..+.+++..+...|.+.++.++..++..|..+|..+.+++ ...+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 3556778899999999988888888778899999999988889999999999988887653122 22222
Q ss_pred HcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCch
Q 021317 216 KEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 216 ~~g~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
+..-...|+..++ +.+...+..+...+..+..+++.
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence 2235667888766 44567777777788778777653
No 110
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.04 E-value=2.9 Score=42.09 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHh---hccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317 102 GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL---KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 178 (314)
Q Consensus 102 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~ 178 (314)
.+...++.++.++..++....... ...++.++.++ ...+..+.++..++.++..++..-....... ...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 466788999999999985432111 12344444444 2112245788888888887775522211222 23667
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcC
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~ 248 (314)
.++..| + +.++..|+.++.++|...+ ..+.. ...+..|.+++.. -+...+.....++..+...
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 777777 3 6789999999999996553 33332 3456666677776 3578888888888887654
No 111
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.96 E-value=6.6 Score=39.36 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=86.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh---ccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcH
Q 021317 59 KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL---HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVP 134 (314)
Q Consensus 59 ~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL---~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~ 134 (314)
.+.+...++.++.+++.++..-.. .....++.++..+ .++++.++..++++|...+.. .++. ... ..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 445677889999999999875221 0123445555554 335788999999999998842 2222 122 35788
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhc--CCHHHHHHHHHHHHHhhccC
Q 021317 135 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVED--GSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 135 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~L~~~~ 206 (314)
.++..|.+ +.++..|+.++.+++.. .+..+.. -...++.+..++.. -+...+..+..++..++...
T Consensus 533 ~l~~~l~~----~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGN----PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTC----GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCC----chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 88888854 36778899999999842 2333321 01233444555554 24678888889998887644
No 112
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.64 E-value=4.3 Score=40.72 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=88.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhc-cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317 100 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 178 (314)
Q Consensus 100 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~ 178 (314)
.+.+...++.++.+|..++...... ....++.++..+.. ..+.+.++..++.++..++..-....... ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 4457788999999999998543211 02234455554432 11345788888888887776532222444 46889
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH--cCChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCC
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~--~~~~~~~~A~~~L~~l~~~~ 249 (314)
.++..|.+ +.++..|+.+|.++|...+ ..+.. ...++.|..++.. -+...+.....++..+....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~----~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECK----YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTG----GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 99998854 7899999999999996542 22221 2234444455554 25678888888888887544
No 113
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.06 E-value=2.2 Score=38.38 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=103.4
Q ss_pred HHHHhH-hhccCchhH-HHHHhcCCcHHHHHHhcC----C-------CHHHHHHHHHHHHHhccCCCChhHHh-hcCcHH
Q 021317 28 NLMGPL-WQLSKTRNK-VKIATAGAIPPLVELLKF----Q-------NGTLRELAAAAILTLSAAAPNKPAIA-ASGAAP 93 (314)
Q Consensus 28 a~~al~-l~~~~~~~~-~~l~~~g~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~La~~~~~~~~i~-~~g~l~ 93 (314)
.+..|. .+...+..+ ..+ ..+|+..|+.+|.. + +.+.+..++.+|..+..+..+...+. .++++.
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred HHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence 445555 334444444 344 46788888888731 1 34567778889998877765555554 678999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCC--C-chhhh----------hcCCcHHHHHHhhccCCchHHHHHHHHHHHHh
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKE--N-SSPIL----------DATAVPPLINLLKDCKKYSKFAEKATALLEIL 160 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 160 (314)
.++..|.++++.++..++..|..+|..++ + ...+. +..-...+++.+..+. ..++...++..+-.+
T Consensus 104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Confidence 99999999999999999999988885543 4 33332 2346667888887543 347777888887777
Q ss_pred cCChhh-------hhHHHhccCCHHHHHHHhhc-CCHHH
Q 021317 161 SSSEEG-------RIAITNSDGGILTLVETVED-GSLVS 191 (314)
Q Consensus 161 ~~~~~~-------~~~i~~~~g~v~~Lv~ll~~-~~~~~ 191 (314)
....+. |..+. ..| +..++.-|+. .++.+
T Consensus 183 v~~~~dl~~R~~LR~Ef~-~~G-L~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELM-RLG-LHQVLQELREIENEDM 219 (386)
T ss_dssp HTTCSCHHHHHHHHHHHH-HTT-HHHHHHHHTTCCCHHH
T ss_pred HCCCCCHHHHHHHHHHHH-HCC-hHHHHHHHhccCChhH
Confidence 666433 45555 354 4445555554 44443
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.46 E-value=2 Score=43.98 Aligned_cols=166 Identities=15% Similarity=0.078 Sum_probs=100.5
Q ss_pred cHHHHHHHhcc----CCHHHHHHHHHHHHHhcC----CCCCchhhhhcCCcHHHHHHh----hccCCchHHHHHHHHHHH
Q 021317 91 AAPLLVQILHS----GSVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLL----KDCKKYSKFAEKATALLE 158 (314)
Q Consensus 91 ~l~~Lv~lL~~----~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~~a~~~L~ 158 (314)
.+..+..++.+ .++.++..++-++.+|.. ....+. ...++.+.+.+ ..++ ..-...++.+|.
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~--~~~~~~~LkaLG 465 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAK--EEEIVLALKALG 465 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhh
Confidence 44555666654 356677777777766652 222221 12345555444 4433 234567888898
Q ss_pred HhcCChhhhhHHHhccCCHHHHHHHhhc-------CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhh--hc
Q 021317 159 ILSSSEEGRIAITNSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT--VE 229 (314)
Q Consensus 159 ~L~~~~~~~~~i~~~~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll--~~ 229 (314)
|+.. ...++.|..++.. ....++..|+.+|..++...+.. +-+.|.++. +.
T Consensus 466 N~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---------v~~il~~i~~n~~ 525 (1056)
T 1lsh_A 466 NAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---------VQEIVLPIFLNVA 525 (1056)
T ss_dssp HHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---------HHHHHHHHHHCTT
T ss_pred ccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---------HHHHHHHHhcCCC
Confidence 8765 2355666666632 23568889999999998765432 234466666 34
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 230 GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 230 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
.++++|..|...|-.. ++. ...+..+...+. .+.+...+....+.|+++++.+
T Consensus 526 e~~EvRiaA~~~Lm~t--~P~-----~~~l~~ia~~l~--~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 526 IKSELRIRSCIVFFES--KPS-----VALVSMVAVRLR--REPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp SCHHHHHHHHHHHHHT--CCC-----HHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHH--CcC-----HHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHhcC
Confidence 6789988888777432 232 334455555554 4446778888888888888644
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.38 E-value=3.5 Score=34.21 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=88.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHH-HhccCCHHHHHHHHHHHHHhcC--CCCCchhhhhcC
Q 021317 55 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLST--CKENSSPILDAT 131 (314)
Q Consensus 55 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~-lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g 131 (314)
..+.+++..++|..|+..|..+ . .....++.+-. +-.+++-.+++.++.++..++. +++ .
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~ 139 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K 139 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred HHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence 3445677788999999988877 2 11234555555 4456788999999999999884 332 1
Q ss_pred CcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHH
Q 021317 132 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR 211 (314)
Q Consensus 132 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~ 211 (314)
.++.+.....+.+. .++..|...+.-.+..+..+... .-.++.|-.+..+.+.=++......|..++..+|+-++
T Consensus 140 ~l~~~~~W~~d~n~--~VRR~Ase~~rpW~~~~~~k~dp---~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 140 ALPIIDEWLKSSNL--HTRRAATEGLRIWTNRPYFKENP---NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp THHHHHHHHHCSSH--HHHHHHHHHTCSGGGSTTTTTCH---HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHhhHHHhccchhhcCH---HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 56777888887654 66666655543222211111110 11334444455566788999999999999999986444
Q ss_pred HHHHH
Q 021317 212 QLILK 216 (314)
Q Consensus 212 ~~i~~ 216 (314)
..+.+
T Consensus 215 ~~~~~ 219 (240)
T 3l9t_A 215 IELKN 219 (240)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44443
No 116
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.10 E-value=5.3 Score=35.38 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh-
Q 021317 107 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE- 185 (314)
Q Consensus 107 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~- 185 (314)
...+...|.-|-.+.+..+-+++..++..+....+..+. ++.......|..++....-...=. ...+|-++..+.
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--DLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--HHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--HHHHhhhheeeeecchHHHhhccc--cccchHHHHHhcc
Confidence 344555554444555566778899999999999988755 777788888877766544432222 246777777775
Q ss_pred cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-------CCHHHHHHHHHHHHHh
Q 021317 186 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-------GTFEAQERARTLLDLL 245 (314)
Q Consensus 186 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~l 245 (314)
++++++.-...+.|.|...+.. -.++..+..|+++.|-..+.. .+..-+..|+++++|.
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq-~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQ-HVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCH-HHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhccc-chHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 5778999999999999999875 567888889999988875432 1344455666666554
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.35 E-value=2.3 Score=39.18 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=83.8
Q ss_pred ccCCHHHHHHHHHHHHHhcCC-CCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHH
Q 021317 100 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 178 (314)
Q Consensus 100 ~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~ 178 (314)
..+++..+.-|+..|.....+ ++.. ..++..+++++.+.+. .++..|..-|..+|.+ ++... .+.
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck~-~~i~k------iaD 103 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDV--SIRRQAIKELPQFATG-ENLPR------VAD 103 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSH--HHHHHHHHHGGGGCCT-TCHHH------HHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccH--HHHHHHHHhhHHHhhh-hhhhh------HHH
Confidence 456788889999888887743 3322 3467888999988644 7888999999999988 55444 445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 021317 179 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL 242 (314)
Q Consensus 179 ~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L 242 (314)
.|+++|.++++.-....-.+|..|-..++. +.+..|...+..+++.+|+.+..-|
T Consensus 104 vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 104 ILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 899999988766555566666666555432 3455666655557788888877644
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.06 E-value=13 Score=34.17 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=79.4
Q ss_pred ccCCHHHHHHHHHHhH-hhccCchhHHHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHH
Q 021317 18 TYFEGYARRLNLMGPL-WQLSKTRNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 96 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~-l~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv 96 (314)
..++++.++-|..-|. .....++-...- +..++++..+++..+|.+|...|-.++.+ ++-..| ..-|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence 3456777777777777 677777755443 45688888888888888888888888877 554444 45778
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH
Q 021317 97 QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE 158 (314)
Q Consensus 97 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~ 158 (314)
++|...++.-....-.+|..|...+. .+.+..+..-+..++ +.+++.++..|.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~--e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGE--DIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSC--HHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccc--hHHHHHHHHHHH
Confidence 88888877665555555555543221 234555555555543 366777777765
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.72 E-value=1.5 Score=44.85 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHhcCChhh--hhHHHhccCCHHHHHHHhhc-----CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCC
Q 021317 147 SKFAEKATALLEILSSSEEG--RIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA 219 (314)
Q Consensus 147 ~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~ 219 (314)
...++.++.++..++.+... -...+ ..+++.|+.++.. ....++..++++++..+..-. . ..... ...
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~-~~~~L-~~v 541 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFV--VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-A-HWNFL-RTV 541 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-H-CHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHH--HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-c-cHHHH-HHH
Confidence 47789999999998877432 22333 3478888888863 223344556677766553210 0 00111 123
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcc------hhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHH
Q 021317 220 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS------SSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 220 v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~------~~~~~~lv~~l~~~~-~~~~~~~~~A~~~L~~l~~~s 291 (314)
+..|.+.+.+.++.++..|++++.++|......... ...++.++..+..-. .-+.+....+-.++..+++..
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 444555555567899999999999999755432221 113444444333211 223455566666666666543
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.16 E-value=13 Score=32.57 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=146.9
Q ss_pred HHHHhcCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-CChhH----Hh-hcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 021317 43 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPA----IA-ASGAAPLLVQILHSGSVQGRVDAVTALHY 116 (314)
Q Consensus 43 ~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~----i~-~~g~l~~Lv~lL~~~~~~~~~~a~~~L~n 116 (314)
..+...+.+..|+..|..=+-+.+..++.+..++-... +++.. +. ....+..|+..-+ ++++-..+-..|+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 34456788888898888878899999999888877643 22222 22 2233333333333 34455566677888
Q ss_pred hcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHh-cCChhhhhHHHhc--cCCHHHHHHHhhcCCHHHHH
Q 021317 117 LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL-SSSEEGRIAITNS--DGGILTLVETVEDGSLVSTQ 193 (314)
Q Consensus 117 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~--~g~v~~Lv~ll~~~~~~~~~ 193 (314)
....+.....+...+.+-.+.+.++.+ ..++..-|..++..| ..+.......... ...+...-.+|.+++--++.
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 778877777788877788888888775 447777777777755 4444443344311 12355677788889988999
Q ss_pred HHHHHHHHhhccCcH-HHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch--hhcc--hhhhHHHHHHHh
Q 021317 194 HAVGALLSLCQSCRD-KYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS--SSVLEKIVYDIA 267 (314)
Q Consensus 194 ~A~~~L~~L~~~~~~-~~~~~i~~-~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~--~~~~~~lv~~l~ 267 (314)
.++..|..|-.+..+ ......+. ..-+..++.++++.+..+|-.|.-+..-+..++.. ++.. ..-.+.|+..+.
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~ 307 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 307 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999998766432 22333333 44588889999999999999999999888766642 2222 223445666655
No 121
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.74 E-value=3.5 Score=42.03 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCc-hhhhhcCCcHHHHHHhhcc---CCchHHHHHHHHHHHHhcCChhhhhHHHhccCCH
Q 021317 102 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGI 177 (314)
Q Consensus 102 ~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v 177 (314)
.+...++.++.+++.++..-... ..-.-...++.++.+.... .+.+.++..++.++...+..-....... ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence 46788999999999888432111 0000112333344433211 1122232245566665554422223333 2367
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH----------cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 178 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK----------EGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 178 ~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~----------~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
+.++..|.+.++.++..|+.++.++|... +..+.. ...+..+..++..-+.........++..+..
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78888888888999999999999999653 333330 1233333344444445555555556666544
No 122
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=85.85 E-value=2.9 Score=34.71 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC--ChhhhhHHH
Q 021317 94 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS--SEEGRIAIT 171 (314)
Q Consensus 94 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~ 171 (314)
..-.+..++..++|..|+.+|..+ . + ....++.+...+..+. ...+++.+..++..++. +++
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH------
Confidence 334445667789999999988877 2 1 1224444444344433 44888888888877664 221
Q ss_pred hccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch
Q 021317 172 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 251 (314)
Q Consensus 172 ~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~ 251 (314)
..++.+.....+++..+|..|...+.-.|.... .+.. -.-.++.|-.+..+.+.-+|+.-.+.|+.+++..++
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~--~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY--FKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT--TTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch--hhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 256788889999999999999988765443210 0000 011466666677788899999989999999998764
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.12 E-value=2.4 Score=32.17 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=57.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~ 247 (314)
++..+.+-|.++++.++..|+..|-.+..++.......+.+...+..|+.++...++.+++....++..-+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445677778888899999999999888887765666666666678888888877889999999988877653
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.46 E-value=15 Score=37.46 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHhcc----CCCChhHHhhcCcHHHHH----HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCc
Q 021317 62 NGTLRELAAAAILTLSA----AAPNKPAIAASGAAPLLV----QILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAV 133 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~----~~~~~~~i~~~g~l~~Lv----~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i 133 (314)
++.++..+.-++++|.. +...+ ....++.+. +.+...+.+-+..++.+|+|+-.. ..+
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l 473 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSI 473 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHH
Confidence 45566666666666654 21111 112244444 445667888889999999998764 256
Q ss_pred HHHHHHhhc-----cCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhh--cCCHHHHHHHHHHHHH
Q 021317 134 PPLINLLKD-----CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE--DGSLVSTQHAVGALLS 201 (314)
Q Consensus 134 ~~Lv~lL~~-----~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~--~~~~~~~~~A~~~L~~ 201 (314)
+.|..++.. .+....++..|+.+|..++... ... +-+.++.+.. ..++++|-.|+..|..
T Consensus 474 ~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---p~~-----v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 474 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---PRK-----VQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---HHH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---hHH-----HHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 777777643 1222356667777777766321 111 2235667774 3568888888877754
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.71 E-value=3.4 Score=32.17 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=57.2
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.++++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++.+..++..-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 445677778888999999999999998888766677777777788888887765 568999999888877654
No 126
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.95 E-value=4.2 Score=31.11 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=58.1
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.++++.++..|+..|-.+..++.......+.+...+..|++++.. .++.+++....++..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455777778889999999999999999888766777778778888889888763 368899998888877653
No 127
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=78.69 E-value=59 Score=32.86 Aligned_cols=210 Identities=9% Similarity=-0.040 Sum_probs=120.0
Q ss_pred cCCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhcCC---CHHHHHHHHHHHHHhcc--CCC----ChhHHhhc
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLKFQ---NGTLRELAAAAILTLSA--AAP----NKPAIAAS 89 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~La~--~~~----~~~~i~~~ 89 (314)
+.++..|..|-.-|.....+++ +......+|.++ ++.+|..|+.+|.+... .++ .+..+. .
T Consensus 19 ~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~ 88 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-D 88 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-H
Confidence 3356667777666655444444 344555666543 68899999999988544 223 233332 2
Q ss_pred CcHHHHHHHhc-cCCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC----
Q 021317 90 GAAPLLVQILH-SGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS---- 163 (314)
Q Consensus 90 g~l~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~---- 163 (314)
..+..+.+.-. ...+.++...+.+|..+.... .. .=.+.++.++.++..++.+ ......+++|..++..
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~-~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQS-EFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChh-HHHHHHHHHHHHhHHHHHhc
Confidence 23333332100 234567888888888877431 11 0134677777777764331 2334455555522211
Q ss_pred -----hh--h-----hhHHHhcc---CCHHHHHHHhh----cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH
Q 021317 164 -----EE--G-----RIAITNSD---GGILTLVETVE----DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL 224 (314)
Q Consensus 164 -----~~--~-----~~~i~~~~---g~v~~Lv~ll~----~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv 224 (314)
.+ . +..+. +. -+++....+|. +.++.++..++.+|......-+ -..+.+.+.++.+.
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~-~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~---~~~i~~~~ll~~l~ 239 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIR-ANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN---INLIVNEPCMNLLY 239 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---HHHHHCHHHHHHHH
T ss_pred ccccCHHHHhhhHHHHHHHH-hccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC---HHhhhcchHHHHHH
Confidence 00 1 22222 11 01344444443 3678888999999988876543 35566667788888
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhcCC
Q 021317 225 RLTVEGTFEAQERARTLLDLLRDTP 249 (314)
Q Consensus 225 ~ll~~~~~~~~~~A~~~L~~l~~~~ 249 (314)
+++. ++..+..|+.+|..+....
T Consensus 240 ~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 240 SFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred HHcC--ChHHHHHHHHHHHHHHHcC
Confidence 7775 4899999999998887544
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.60 E-value=5.5 Score=30.48 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=58.2
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-+.+.++.++..|+..|-.+..++.......+....++..|++++.. .++.+++....++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 455777788888999999999999999888766677777777788889988753 468899999988887764
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.67 E-value=5.1 Score=31.48 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=57.7
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.++++.++..|+..|-.+..++.......+.+...+..|+.++.. .++.+++.+..++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 445777888889999999999999999888765677777778888889988752 358899999888877654
No 130
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.20 E-value=25 Score=35.57 Aligned_cols=178 Identities=9% Similarity=-0.103 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHhH-hhc-cCch----hHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHH
Q 021317 21 EGYARRLNLMGPL-WQL-SKTR----NKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 93 (314)
Q Consensus 21 ~~~~~~~a~~al~-l~~-~~~~----~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~ 93 (314)
++++|..|+..|. ... -.++ .+..+ +...++.+...-. .+.+-++.+.+.++..++...-- -.+.+.++
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~ 131 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFA 131 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHH
Confidence 6899999998887 332 2333 33333 3333343433110 23566888888888888764200 14678889
Q ss_pred HHHHHhccCCH-HHHHHHHHHHHHhcCC---CC-C------------chhhhhc---CCcHHHHHHhhcc--CCchHHHH
Q 021317 94 LLVQILHSGSV-QGRVDAVTALHYLSTC---KE-N------------SSPILDA---TAVPPLINLLKDC--KKYSKFAE 151 (314)
Q Consensus 94 ~Lv~lL~~~~~-~~~~~a~~~L~nLs~~---~~-~------------~~~i~~~---g~i~~Lv~lL~~~--~~~~~~~~ 151 (314)
.++.++.++++ ......+.+|..++.. .. . ++.+.+. .+++....+|... .....+..
T Consensus 132 ~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~ 211 (980)
T 3ibv_A 132 SLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVG 211 (980)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 99999987554 3445555666644321 11 1 1122211 1134444444331 12346778
Q ss_pred HHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 152 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 152 ~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
.++.++......-+. ..++ +...++.+..++.+ +.++..|+.+|..+....
T Consensus 212 ~~L~~l~s~i~wi~~-~~i~-~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 212 LCLQVYAQWVSWINI-NLIV-NEPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHTTTSCH-HHHH-CHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCH-Hhhh-cchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 888888887776443 3344 46788888888854 789999999999987643
No 131
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=74.94 E-value=42 Score=34.01 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-----CCHHHHHHHHHHHHHhhcCCc-hhhcchhhhHH
Q 021317 188 SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-----GTFEAQERARTLLDLLRDTPQ-EKRLSSSVLEK 261 (314)
Q Consensus 188 ~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-----~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~ 261 (314)
+-..++.++.+++.++..........+ -...++.|..+... ..+.++..+++++...++.-. .+..-..+++.
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ 544 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILK 544 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456789999999999865432111111 11234444443321 234455457778877653211 11111233444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 021317 262 IVYDIAARVDGADKAAETAKRLLQDMVQRS 291 (314)
Q Consensus 262 lv~~l~~~~~~~~~~~~~A~~~L~~l~~~s 291 (314)
++..+ .+..++.+..|+.++.++.+..
T Consensus 545 ll~~l---~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 545 LFEFM---HETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHT---TSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCHHHHHHHHHHHHHHHHHH
Confidence 43333 2445899999999999999754
No 132
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.41 E-value=6.7 Score=32.90 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCCC-ChhHHhhcCcHHHHHHHhcc--------CCHHHHHHHHHHHHHhcCC-CCCchhhh
Q 021317 59 KFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHS--------GSVQGRVDAVTALHYLSTC-KENSSPIL 128 (314)
Q Consensus 59 ~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~g~l~~Lv~lL~~--------~~~~~~~~a~~~L~nLs~~-~~~~~~i~ 128 (314)
.+.++..+.-++++++|+-.++. .+..+.+......+++.+.+ ++..++..++..+.|++.. ...+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 34567889999999999999888 46555544334445554321 2567888999999999842 11111
Q ss_pred hcCCcHHHHHHhhc----c---CCchHHHHHHHHHHHHhcCChh
Q 021317 129 DATAVPPLINLLKD----C---KKYSKFAEKATALLEILSSSEE 165 (314)
Q Consensus 129 ~~g~i~~Lv~lL~~----~---~~~~~~~~~a~~~L~~L~~~~~ 165 (314)
+......+++.+.. . ..+.+....++-++.+|...+.
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12233455555542 1 1133556677777888775433
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=73.58 E-value=28 Score=30.02 Aligned_cols=136 Identities=16% Similarity=0.055 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHhHhhccCchhHHHHHhc--CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CCChhHHh--hcCcHHHH
Q 021317 21 EGYARRLNLMGPLWQLSKTRNKVKIATA--GAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIA--ASGAAPLL 95 (314)
Q Consensus 21 ~~~~~~~a~~al~l~~~~~~~~~~l~~~--g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~--~~g~l~~L 95 (314)
+...-..|+..|.-.+++-..-..+.+. ..+..|+ +..+..+.+++.|++++..--.+ |.....|. ....+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 5556788888888666677766676653 3333333 33445678999999999886554 44444444 34566655
Q ss_pred HHHhcc-------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhc
Q 021317 96 VQILHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 161 (314)
Q Consensus 96 v~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 161 (314)
..-|.. ....+...-+++|.-|..++ ..+ ...++..|.+++.....+..++..++.++..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 555443 24456677788888888776 223 244678888888765335577777777776543
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.51 E-value=46 Score=28.63 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=91.2
Q ss_pred cHHHHHHhhcc--C--CchHHHHHHHHHHHHhcCChhhhhHHHh-ccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCc
Q 021317 133 VPPLINLLKDC--K--KYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 207 (314)
Q Consensus 133 i~~Lv~lL~~~--~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~ 207 (314)
...+.++++++ . .+....+.++..|..++-+-..--.++. +-..+..|+ +.....+.+++.|.+++..--.++|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 33455666665 1 1223467888888888888766666663 222233333 2234567899999999999888887
Q ss_pred HHHHHHHHH--cCChHHHHHhhhc-------CCHHHHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHH
Q 021317 208 DKYRQLILK--EGAIPGLLRLTVE-------GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAE 278 (314)
Q Consensus 208 ~~~~~~i~~--~g~v~~Lv~ll~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~ 278 (314)
...+.+.+ ...+..+..-+.. ....+++.=+.+|.-|...+.. . ....+..|...+... ...+.++.
T Consensus 103 -~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-F-~~~~m~~L~~ly~~~-~~d~~~k~ 178 (315)
T 3qml_C 103 -PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED-L-PIYSTVVLQNVYERN-NKDKQLQI 178 (315)
T ss_dssp -HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-C---CCHHHHHHHHHHT-TTCHHHHH
T ss_pred -HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-h-hhccHHHHHHHHccC-CCCHHHHH
Confidence 45555555 4566666654443 2345555556788888877632 2 222334444444422 23578888
Q ss_pred HHHHHHHHHHH
Q 021317 279 TAKRLLQDMVQ 289 (314)
Q Consensus 279 ~A~~~L~~l~~ 289 (314)
++..++..+-.
T Consensus 179 Kvl~li~d~f~ 189 (315)
T 3qml_C 179 KVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 88888876663
No 135
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=69.75 E-value=17 Score=27.47 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=53.8
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHH-cCChHHHHHhhhc------CC--HHHHHHHHHHHHHhh
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVE------GT--FEAQERARTLLDLLR 246 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~-~g~v~~Lv~ll~~------~~--~~~~~~A~~~L~~l~ 246 (314)
+++.|.+-|.+.++.++-.|+.+|-.|+...++.++..+.+ ...|+.+.++--- .+ ..+++.|-.++..|-
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 45578888888889999999999999998877777777776 4455656553211 12 567788888887775
Q ss_pred cCC
Q 021317 247 DTP 249 (314)
Q Consensus 247 ~~~ 249 (314)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 136
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=68.92 E-value=2.7 Score=42.65 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=102.1
Q ss_pred cHHHHHHHhccCCH-HHHHH-HHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHH-----HhcCC
Q 021317 91 AAPLLVQILHSGSV-QGRVD-AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE-----ILSSS 163 (314)
Q Consensus 91 ~l~~Lv~lL~~~~~-~~~~~-a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~-----~L~~~ 163 (314)
.+|.++.+.+..+. ++... |..++..|+..+-....+-. ++..+.+..++...+ .+..++..+. |+-..
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~--~l~~l~~~~~~s~sW--~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA--IVDYVCSSNVALSSN--QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH--HHHHSSCTTTTSCSS--SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHHHHc
Confidence 55555555554443 55555 66677777754432222111 223333333322233 3444544433 33222
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcCC-HHHHHHHHHHHHHhhccC-cHHHHHHHHH---cCC-----hHHHHHhhhcCCHH
Q 021317 164 EEGRIAITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSC-RDKYRQLILK---EGA-----IPGLLRLTVEGTFE 233 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~~-~~~~~~A~~~L~~L~~~~-~~~~~~~i~~---~g~-----v~~Lv~ll~~~~~~ 233 (314)
.+... ......++.+|.+.. .+||+.|+.+|.-|.... +....+.+++ ... ...+-+-. +.+..
T Consensus 837 ~~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~ 910 (997)
T 1vsy_5 837 TEEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDI 910 (997)
T ss_dssp CTTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCH
T ss_pred CHHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHH
Confidence 22211 125568888899999 999999999999885444 3122223322 222 11211100 11113
Q ss_pred HHHHHHHHHHHhhcCCchhhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 021317 234 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 290 (314)
Q Consensus 234 ~~~~A~~~L~~l~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~~ 290 (314)
.+..|+-.|..+-..-+-..--+.-+|.++..|+.+..+.+-.+..++.+|..+.+.
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 444555667776654442121256788888888866655555899999999999864
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=67.28 E-value=1.2e+02 Score=31.14 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHhHhhccCchhHHHHHhcCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccC-----C-CChhHHhhcCcH
Q 021317 20 FEGYARRLNLMGPLWQLSKTRNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAA-----A-PNKPAIAASGAA 92 (314)
Q Consensus 20 ~~~~~~~~a~~al~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~-----~-~~~~~i~~~g~l 92 (314)
++.+.|..|-..|.....+++... .+..+|. +.++.+|..|+.+|.+.... + +.+..+ +...+
T Consensus 40 p~~~~r~qA~~~L~q~q~sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L-R~~Ll 109 (1073)
T 3gjx_A 40 GEGAQQRMAQEVLTHLKEHPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI-KKYVV 109 (1073)
T ss_dssp SSHHHHHHHHHHHHTSSCCSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH-HHHHH
Confidence 445555555555555555554433 3334443 45789999999999996552 2 222222 23334
Q ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHhcCCC-CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcCC---
Q 021317 93 PLLVQILHS-----GSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--- 163 (314)
Q Consensus 93 ~~Lv~lL~~-----~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--- 163 (314)
..+.+.-.+ .++.++...+.++..++..+ .... .+.++.++.++..+ + ...+..+.+|..|+..
T Consensus 110 ~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~~-~--~~~~~~L~IL~~L~EEV~d 182 (1073)
T 3gjx_A 110 GLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRTS-E--SLCQNNMVILKLLSEEVFD 182 (1073)
T ss_dssp HHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHC-H--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCCC-H--HHHHHHHHHHHHHHHHHHh
Confidence 444443222 24667777777887777331 1111 34666677777543 1 3445666666665433
Q ss_pred -h-h----h-----hhHHHhccCCHHHHHHHh----h-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHH-Hh
Q 021317 164 -E-E----G-----RIAITNSDGGILTLVETV----E-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL-RL 226 (314)
Q Consensus 164 -~-~----~-----~~~i~~~~g~v~~Lv~ll----~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv-~l 226 (314)
. . . +..+. + .++.++.++ . ..++.+...++.+|..+...-+ -..+++.+.++.|+ .+
T Consensus 183 ~~~~~l~~~r~~~lk~~L~-~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~---i~~i~~~~ll~~L~~~~ 256 (1073)
T 3gjx_A 183 FSSGQITQVKAKHLKDSMC-N--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP---LGYIFETKLISTLIYKF 256 (1073)
T ss_dssp SHHHHBCHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC---THHHHSSSHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHH-H--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC---HHHhccchHHHHHHHHh
Confidence 0 0 1 22232 1 245555444 2 3567778888899988877653 35677777777774 55
Q ss_pred hhcCCHHHHHHHHHHHHHhhcC
Q 021317 227 TVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 227 l~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+ .++..+..|+.+|..+...
T Consensus 257 L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 257 L--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp S--SSHHHHHHHHHHHHHHHHS
T ss_pred c--CChHHHHHHHHHHHHHHhc
Confidence 4 5788999999999998653
No 138
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=64.76 E-value=3.2 Score=34.94 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHhHhhccCch-hHHHHHhcCCcHHHHHHhcC--------CCHHHHHHHHHHHHHhccCC-CChhHHhh
Q 021317 19 YFEGYARRLNLMGPLWQLSKTR-NKVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAA-PNKPAIAA 88 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~La~~~-~~~~~i~~ 88 (314)
++++..+.-+++.+.++..++. .+..+......+.+++.+.+ ++..++..++..+.|+|... ..+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4578899999999997777777 66666544344555655422 25568888999999998731 1111 1
Q ss_pred cCcHHHHHHHhcc---------CCHHHHHHHHHHHHHhcCCCC
Q 021317 89 SGAAPLLVQILHS---------GSVQGRVDAVTALHYLSTCKE 122 (314)
Q Consensus 89 ~g~l~~Lv~lL~~---------~~~~~~~~a~~~L~nLs~~~~ 122 (314)
......+++.+.. .+++....++-+|++|...+.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 3344556666552 377899999999999996443
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.38 E-value=5 Score=30.32 Aligned_cols=70 Identities=6% Similarity=0.031 Sum_probs=55.5
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCC--ChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 119 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~ 119 (314)
++..+...|.+.++.++..|+..|-.+..+-. ....|.+...+..++.++...++.++...+..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35667788888999999999888888877643 35556677788888888888899999999998887763
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.44 E-value=12 Score=30.63 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=55.8
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.+.++.++..|+..|-.+..+........+.+...+..|..++.. .++.+++....++...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 345677778888999999999999988877655566677667777778777754 468899999988887764
No 141
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.34 E-value=39 Score=35.00 Aligned_cols=181 Identities=10% Similarity=-0.044 Sum_probs=98.6
Q ss_pred ccCCHHHHHHHHHHhH-hhcc-----CchhHHHHHhcCCcHHHHHHhc---CCCHHHHHHHHHHHHHhccCCCChhHHhh
Q 021317 18 TYFEGYARRLNLMGPL-WQLS-----KTRNKVKIATAGAIPPLVELLK---FQNGTLRELAAAAILTLSAAAPNKPAIAA 88 (314)
Q Consensus 18 ~~~~~~~~~~a~~al~-l~~~-----~~~~~~~l~~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 88 (314)
.+.++.+|..|+..|. .... +++.|..+ +...++.+...-. .+++.++...+.++..++..+-- -..
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHW 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccc
Confidence 4557788888887776 3221 33444443 3233333332211 13577888888888888764211 025
Q ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHhcCC---CCC----ch-----hhhhc--CCcHHHHHHhhcc-----------
Q 021317 89 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KEN----SS-----PILDA--TAVPPLINLLKDC----------- 143 (314)
Q Consensus 89 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~----~~-----~i~~~--g~i~~Lv~lL~~~----------- 143 (314)
.+.++.+++++.+ ++..+..++.+|..|+.. .+. +. .+.+. .+++.+..++...
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7889999999876 566678888888888632 111 11 11111 2333334444331
Q ss_pred ------CCchHHHHHHHHHHHHhcCChhhhhHHHhcc-CCHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 144 ------KKYSKFAEKATALLEILSSSEEGRIAITNSD-GGILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 144 ------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
.....+...++.++.+.....+.. .+.... ..++.+..++. ++.++..|+.+|..+....
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~-~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSMS-HITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCHH-HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 011234556666666554443322 222111 25566665554 4677888999998887643
No 142
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=59.73 E-value=23 Score=36.20 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHhcCCCC---CchhhhhcCCcHHHHHHhhccCC-chHH--HHHHHHHHHHhcCChhhhhHHHhccCC
Q 021317 103 SVQGRVDAVTALHYLSTCKE---NSSPILDATAVPPLINLLKDCKK-YSKF--AEKATALLEILSSSEEGRIAITNSDGG 176 (314)
Q Consensus 103 ~~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~lL~~~~~-~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~g~ 176 (314)
+....+.++++++.++..-. .+..+. .+++.|+.+...... +.+. ....+.+++..+..-.....+. .-.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~v 567 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTV 567 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHH
Confidence 57788999999999984322 112222 356667776654321 1121 1112234444333322333444 236
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 021317 177 ILTLVETVEDGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 177 v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~ 206 (314)
+..|++.+.+.++.+++.|+.++..+|..+
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C 597 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 677888888888999999999999999765
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.66 E-value=16 Score=29.68 Aligned_cols=72 Identities=7% Similarity=0.067 Sum_probs=55.6
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.+.++.++..|+..|-.+..+........+.+...+..|+.++.+ .++.+++.+..++..-+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 344677777888999999999999999888755566677766788888887764 468899888887777653
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.07 E-value=8.9 Score=29.78 Aligned_cols=69 Identities=6% Similarity=-0.027 Sum_probs=54.5
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcC
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~ 119 (314)
+..|...|.+.++.++..|+..|-.+..+- .....|.....+..|+.++.. .++.++..++..|..-+.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 456777888899999999998888888763 345567777888888888875 578999999988877663
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.93 E-value=26 Score=26.83 Aligned_cols=72 Identities=11% Similarity=0.252 Sum_probs=54.0
Q ss_pred CHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVE---GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~-Lv~ll~~---~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|+ ++++.++..|+..|-.+..++.......+.+...+.. |++++.. ....+++.+..++..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3446777776 4788899999999999888876677777777778887 7887742 235888888888777654
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.98 E-value=10 Score=28.93 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=56.4
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc------CCHHHHHHHHHHHHHhcC
Q 021317 50 AIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS------GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 50 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 119 (314)
++..|..-+.+.++.++..|+..|-.+..+- .....|.....+..|++++.. .++.++...+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3556788888999999999999888888764 345667778889999999863 578999999999888774
No 147
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=54.44 E-value=1.8e+02 Score=30.10 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHh--ccCCHHHHHHHHHHHHHhcCC------CCCchhhhhcCCc
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL--HSGSVQGRVDAVTALHYLSTC------KENSSPILDATAV 133 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL--~~~~~~~~~~a~~~L~nLs~~------~~~~~~i~~~g~i 133 (314)
+.+.+..|-..|..+-.++ .+...+...| .+.++.+|..|+..|.|.... ++.+..|.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6677888888887774433 2334444444 345788999999999988632 12222222
Q ss_pred HHHHHHhhccC-----CchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 021317 134 PPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 204 (314)
Q Consensus 134 ~~Lv~lL~~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~ 204 (314)
..+++.+.... ....++.....++..++...-... =...++.++.++.+ ++..++.++.+|..|+.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 23444443321 233555556666666655422110 24567788888866 55667888888888874
No 148
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.45 E-value=1.2e+02 Score=27.05 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=43.6
Q ss_pred CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 021317 49 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 117 (314)
Q Consensus 49 g~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nL 117 (314)
.+++.++++-.+++.++|.+.+..|...+..+ ..+ -...++.|..+|++.++.+.+.++.+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 55667777777778888888888887765421 111 134566777778877888877777766654
No 149
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=51.10 E-value=1.5e+02 Score=27.26 Aligned_cols=129 Identities=18% Similarity=0.096 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhh
Q 021317 62 NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK 141 (314)
Q Consensus 62 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~ 141 (314)
|++....-...+...+.. ..|.+-=-++.++..|.++++.+...|+.+|. .+..+..+...+.+..|++++-
T Consensus 92 D~~~Li~Ll~~il~~~~F----d~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyF 163 (500)
T 3vld_A 92 NYDYLLDVVDKLVPMADF----DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILF 163 (500)
T ss_dssp CHHHHHHHHHHHHHHSCH----HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCH----HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHc
Confidence 455544444444444332 34445556788899999999999999999988 5567888888999999999998
Q ss_pred ccCCchH-HHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCCHHHHHHHHHHHH
Q 021317 142 DCKKYSK-FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 200 (314)
Q Consensus 142 ~~~~~~~-~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~ 200 (314)
+.+..-. +.-..=.++..|+++.=.|+++. ++ ..|.+..+=++.++.....-+..+.
T Consensus 164 d~~t~i~~vvn~IE~~~~~LssdeLirrril-~n-nl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 164 DEKVENDKLITAIEKALERLSTDELIRRRLF-DN-NLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSHHHHHHHH-TT-THHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCchHHHHHHHH-HH-hHHHHHHHhcCCCceeHHHHHHHHH
Confidence 8655434 65555556667777766777777 33 5554444333344444343444443
No 150
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=51.00 E-value=73 Score=25.41 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=68.6
Q ss_pred cHHHHHHhcC------CCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccC---CHHHHHHHHHHHHHhcCCC
Q 021317 51 IPPLVELLKF------QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTCK 121 (314)
Q Consensus 51 v~~Lv~lL~~------~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~ 121 (314)
+|.++.+..+ .+.............|..++.-.-...=.-.+|+++.++-.. ...+|+.|+..|..++..-
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~ 121 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTY 121 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHh
Confidence 5666665522 255666666777777777765443334345788888887432 3389999999999998654
Q ss_pred CCchhhhhcCCcHHHHHHhhccCCchHHHHHHHHHHHHhcC
Q 021317 122 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS 162 (314)
Q Consensus 122 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~ 162 (314)
.+.-.-.+..++..+.+.+.+++......-.|...|..+..
T Consensus 122 ~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 122 SRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp TTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred CccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 43333444456666777666654443444455555554443
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.09 E-value=14 Score=28.82 Aligned_cols=69 Identities=7% Similarity=-0.028 Sum_probs=55.9
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc------CCHHHHHHHHHHHHHhcC
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS------GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nLs~ 119 (314)
+..|...+.+.++.++..|+..|-.+..+- .....|.+...+..|+.++.. .++.++..++..|..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456788888999999999999998888863 456667788889999999863 368999999999888774
No 152
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.79 E-value=45 Score=25.20 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=48.9
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchh----hcchhhhHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK----RLSSSVLEKIVYDIAAR---VDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 219 ~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~----~~~~~~~~~lv~~l~~~---~~~~~~~~~~A~~~L~~l~~ 289 (314)
++..|.+-+.+.++.++..|..+|..|..++... +....+++.++..+... ......++++...++..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566677778899999999999999998766432 23355666665444311 11247889999988887763
No 153
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=47.83 E-value=1.6e+02 Score=26.59 Aligned_cols=131 Identities=8% Similarity=-0.003 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCCChhHHhhcCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhh-cCCcHHHHHHhhcc
Q 021317 66 RELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDC 143 (314)
Q Consensus 66 ~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~ 143 (314)
+..++..|+-+..++.... .+..++ ..+.+..+..+--++++++|+-.++.....++. ......+++.+.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 5556677777666654332 222233 233355788889999999999988874333333 22344555554321
Q ss_pred ----C--CchHHHHHHHHHHHHhcCChhh-hhHHHhccCCHHHHHHHhh---------cCCHHHHHHHHHHHHHhhccC
Q 021317 144 ----K--KYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVE---------DGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 144 ----~--~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~v~~Lv~ll~---------~~~~~~~~~A~~~L~~L~~~~ 206 (314)
. ....++..+.+++.|++...-. +.. ...+..++.++. ..+.+..-.++.+|.+|....
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 1235667777888898875321 211 123345666555 246778888999999998654
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.98 E-value=14 Score=30.23 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=54.8
Q ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccCC--CChhHHhhcCcHHHHHHHhcc-CCHHHHHHHHHHHHHhcC
Q 021317 51 IPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLST 119 (314)
Q Consensus 51 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~nLs~ 119 (314)
+..|..-|.+.++.++..|+..|-.+..+- .....|.+...+..|+.++.. .++.++...+..|...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456788888999999999999988888763 346667777788888888865 478899999998888763
No 155
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=41.40 E-value=1.5e+02 Score=24.57 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=38.0
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 021317 176 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL 244 (314)
Q Consensus 176 ~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~ 244 (314)
.++.++.+..+.+..+|.+.+..+...|...+ +. -...++.|..++++.++.+.+.++.+..+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-~l-----~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-EL-----LPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55566665556667777777777777764432 11 11245666666777777777666654433
No 156
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=39.43 E-value=1.6e+02 Score=24.37 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCCCChhHHhhcCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 021317 52 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY 116 (314)
Q Consensus 52 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~n 116 (314)
+.++++-.+.+.++|.+.+..+...+..+. -.-...++.|..+|++.++.+.+.++.+..+
T Consensus 56 ~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 56 ESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444344556666666666655442110 0122345555566666666665555554443
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.94 E-value=86 Score=23.83 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=47.2
Q ss_pred ChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHH-HHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEK-IVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 219 ~v~~Lv~ll~-~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~-lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
++..|.+-+. +.++.++..|..+|..|..++.. .+....+++. ++..+....+....+++++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4455666665 47899999999999999876643 2333456666 5555432122235789999988887774
No 158
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=35.99 E-value=69 Score=28.53 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=46.7
Q ss_pred cCCHHHHHHHhhcCCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 021317 174 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 245 (314)
Q Consensus 174 ~g~v~~Lv~ll~~~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l 245 (314)
...++.++.+-.+.+..+|.+.+..+...|.... + .+ ...++.|..++++.++.+.+.++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~-e---l~--~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI-E---LL--LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-G---GH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH-H---HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4577888888888888899999998888876432 1 12 23566777778888888887776555444
No 159
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=35.09 E-value=1.3e+02 Score=26.50 Aligned_cols=131 Identities=8% Similarity=0.010 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCCCChhHHhhcCcHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCCchhhhhc-CCcHHHHHHhhc-
Q 021317 66 RELAAAAILTLSAAAPNKPAIAASGAAPLLV-QILHSGSVQGRVDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKD- 142 (314)
Q Consensus 66 ~~~a~~~L~~La~~~~~~~~i~~~g~l~~Lv-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~lL~~- 142 (314)
+..++-.|+-+..++.... .+..++ ..+.+..+..+--++++++|+-.++.....++.. .....+++.+.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~~------~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 5556677777666654332 233333 2333557888899999999999888743333322 123334444421
Q ss_pred ---cC--CchHHHHHHHHHHHHhcCChhh-hhHHHhccCCHHHHHHHhh---------cCCHHHHHHHHHHHHHhhccC
Q 021317 143 ---CK--KYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVE---------DGSLVSTQHAVGALLSLCQSC 206 (314)
Q Consensus 143 ---~~--~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~v~~Lv~ll~---------~~~~~~~~~A~~~L~~L~~~~ 206 (314)
.. ....++..+.+++.|++...-. +.. ....+.++.++. ..+++..-.++.+|.+|....
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 11 1235667777888898875321 211 123345666665 246778888999999998654
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=33.97 E-value=1.4e+02 Score=22.31 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=41.9
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCchhhcchh-hhHHHHHHHhhc--C----CC---HHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS-VLEKIVYDIAAR--V----DG---ADKAAETAKRLLQDMV 288 (314)
Q Consensus 219 ~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~-~~~~lv~~l~~~--~----~~---~~~~~~~A~~~L~~l~ 288 (314)
+.+.|.+=+.+.++.++-+|..+|..|+++..+..+..- ---..|..+... . .| ...++++|+.++..|-
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 455666667778899999999999999987754332211 111233333321 1 11 1456788888877653
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.73 E-value=1.1e+02 Score=24.57 Aligned_cols=69 Identities=7% Similarity=0.010 Sum_probs=48.8
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCch----hhcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 021317 219 AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ 289 (314)
Q Consensus 219 ~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~~~~~~lv~~l~~~~~~~~~~~~~A~~~L~~l~~ 289 (314)
++..|.+-+.+.++.++..|..+|..+..+... .+....+++.++..+.. ......++++..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHH
Confidence 455566667789999999999999998876643 23334566666655542 3347889999888887774
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=32.18 E-value=1.1e+02 Score=27.62 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHhHhhccCchh-HHHHHhcCCcHHHHHHhcC--------CCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRN-KVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAAP-NKPAIAA 88 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~La~~~~-~~~~i~~ 88 (314)
+..+..+.-+++.+.++..++.. +..+......+.+++.+.. .+..++..++..+.|+|.... .+. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45688899999999977777774 4444333334566665531 245688888999999986310 010 1
Q ss_pred cCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhcCC
Q 021317 89 SGAAPLLVQILH---------SGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 89 ~g~l~~Lv~lL~---------~~~~~~~~~a~~~L~nLs~~ 120 (314)
...+..+++.+. ..+++....++-+|++|...
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 234456666665 35888999999999999853
No 163
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.67 E-value=1e+02 Score=27.21 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHhHhhccCchh-HHHHHhcCCcHHHHHHhcC--------CCHHHHHHHHHHHHHhccCCC-ChhHHhh
Q 021317 19 YFEGYARRLNLMGPLWQLSKTRN-KVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAAP-NKPAIAA 88 (314)
Q Consensus 19 ~~~~~~~~~a~~al~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~--------~~~~~~~~a~~~L~~La~~~~-~~~~i~~ 88 (314)
+..+..+.-+++.+.++..++.. +..+......+.+++.+.. .+..++..++..+.|+|.... .+. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45688899999999977777774 4444322223445554421 245688888999999986310 000 1
Q ss_pred cCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhcCC
Q 021317 89 SGAAPLLVQILH---------SGSVQGRVDAVTALHYLSTC 120 (314)
Q Consensus 89 ~g~l~~Lv~lL~---------~~~~~~~~~a~~~L~nLs~~ 120 (314)
...+..+++.+. ..+++....++-+|++|...
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 234456666665 35889999999999999853
No 164
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=29.01 E-value=1.8e+02 Score=21.79 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=59.4
Q ss_pred cCCCChhHHhhcCcHHHHHHHhcc------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCchHHHH
Q 021317 78 AAAPNKPAIAASGAAPLLVQILHS------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE 151 (314)
Q Consensus 78 ~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 151 (314)
.....+..+.+.|++..+-..|+. ++..++...+.+|.+|- -.++.+.+.|.-..++.+-++..+....+.
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 344567888899999999988864 36789999999999985 346777778777777777777777667777
Q ss_pred HHHHHHHH
Q 021317 152 KATALLEI 159 (314)
Q Consensus 152 ~a~~~L~~ 159 (314)
.|-.++..
T Consensus 126 la~~Li~~ 133 (145)
T 2xpp_A 126 SAKALVQK 133 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666644
No 165
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=28.71 E-value=51 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 021317 271 DGADKAAETAKRLLQDMVQRSMELSMTRIQQRAAS 305 (314)
Q Consensus 271 ~~~~~~~~~A~~~L~~l~~~s~~~~~~~~~~~~~~ 305 (314)
-|+++.+..|+.+|.+|+...-.+-|+.-+.+|++
T Consensus 105 fG~~~~Q~rak~MI~sLA~~hr~~~~~~~~~~~~~ 139 (140)
T 3v69_A 105 FGPPPFRRDVDRMLTDLAHYCRMKLMEIEALEAGV 139 (140)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46799999999999999988888888877777764
No 166
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.69 E-value=1.7e+02 Score=23.22 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=66.4
Q ss_pred cHHHHHHHhcc------CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHHHHHhhccCCch-HHHHHHHHHHHHhcCC
Q 021317 91 AAPLLVQILHS------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS-KFAEKATALLEILSSS 163 (314)
Q Consensus 91 ~l~~Lv~lL~~------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~a~~~L~~L~~~ 163 (314)
.+|.+++...+ .+.......+.....|..++...-.--=...+|.++.++-+..-.+ .+++.|..++..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 34555555432 2666677777788888877654333222457888888876533222 6889999999988866
Q ss_pred hhhhhHHHhccCCHHHHHHHhhcC--CHHHHHHHHHHHHHhh
Q 021317 164 EEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLC 203 (314)
Q Consensus 164 ~~~~~~i~~~~g~v~~Lv~ll~~~--~~~~~~~A~~~L~~L~ 203 (314)
....-.-. .......+.+.+.+. +....--|+..|..+.
T Consensus 121 ~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYKTL-APRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCchH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 43321222 233455777777654 3444455555555554
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.59 E-value=1.1e+02 Score=23.08 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=50.5
Q ss_pred CHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCcHHHHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhc
Q 021317 176 GILTLVETVED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG-LLRLTVE---GTFEAQERARTLLDLLRD 247 (314)
Q Consensus 176 ~v~~Lv~ll~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~i~~~g~v~~-Lv~ll~~---~~~~~~~~A~~~L~~l~~ 247 (314)
++..|.+-|.. .++.++..|+..|-.+..++.......+.+...+.- |++++.. ....+++....++..-+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 44466666664 467777888888888887776666666666566653 6676653 235799999999988875
No 168
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.70 E-value=4.7e+02 Score=24.00 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhccCCC-ChhHHhhcCcHHHHHHHh-cc-----CCHHHHHHHHHHHHHhcCCCCCchhhhhcCCcHHH
Q 021317 64 TLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL-HS-----GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL 136 (314)
Q Consensus 64 ~~~~~a~~~L~~La~~~~-~~~~i~~~g~l~~Lv~lL-~~-----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 136 (314)
+..+.+.-.|...+..+. ....+ ++.+-++| .+ -|++....-+..+...+.- +.+.+.=-++.+
T Consensus 51 ~Lie~~~LnL~~~t~~~~~~~~~l-----l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~F----d~VLevysve~i 121 (500)
T 3vld_A 51 TLLRKCSLNLVTVVSLPDMDVKPL-----LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADF----DDVLEVYSAEDL 121 (500)
T ss_dssp HHHHHHHHHHHHSCSCCSCCCHHH-----HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCH----HHHHHHSCHHHH
T ss_pred HHHHHHhhcchhcccCCcccHHHH-----HHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCH----HHHHHhCCHHHH
Confidence 455666666776666554 22233 34556666 33 1566655555555555433 234444467788
Q ss_pred HHHhhccCCchHHHHHHHHHHHHhcCChhhhhHHHhccCCHHHHHHHhhcCC---HHHHHHHHHHHHHhhccCcHHHHHH
Q 021317 137 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS---LVSTQHAVGALLSLCQSCRDKYRQL 213 (314)
Q Consensus 137 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~v~~Lv~ll~~~~---~~~~~~A~~~L~~L~~~~~~~~~~~ 213 (314)
++-|+++.+ .+...|+.++. ....+..+. .++.+..++.++-+.+ .++....=.++..|+.+ +-.|+.
T Consensus 122 ~~aL~S~~~--~l~~~~ckVI~----~s~pk~lfa-~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd--eLirrr 192 (500)
T 3vld_A 122 VKALRSEID--PLKVAACRVIE----NSQPKGLFA-TSNIIDILLDILFDEKVENDKLITAIEKALERLSTD--ELIRRR 192 (500)
T ss_dssp HHHHTSSCH--HHHHHHHHHHH----TCSSGGGGT-TSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHhcCCh--HHHHHHHHHhc----ccCchhHhc-cChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch--HHHHHH
Confidence 888888744 77777777776 445566666 7999999999986643 22544444555566643 245667
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 021317 214 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 248 (314)
Q Consensus 214 i~~~g~v~~Lv~ll~~~~~~~~~~A~~~L~~l~~~ 248 (314)
+.+. ..+.|..+-+..++-....-...+.-+..+
T Consensus 193 il~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 193 LFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp HHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhcc
Confidence 7754 567777766667776666666666666544
Done!