Query 021318
Match_columns 314
No_of_seqs 206 out of 1336
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1582 UDP-galactose transpor 100.0 6.7E-53 1.4E-57 372.4 16.9 304 4-314 21-367 (367)
2 KOG1581 UDP-galactose transpor 100.0 2.8E-43 6.2E-48 316.5 23.1 262 18-282 8-319 (327)
3 PF08449 UAA: UAA transporter 100.0 2.7E-42 5.9E-47 322.0 26.9 254 26-282 2-303 (303)
4 KOG1580 UDP-galactose transpor 100.0 4.9E-43 1.1E-47 304.4 13.8 259 18-279 7-316 (337)
5 KOG1583 UDP-N-acetylglucosamin 100.0 8.4E-34 1.8E-38 251.9 12.7 250 26-282 5-320 (330)
6 KOG1441 Glucose-6-phosphate/ph 100.0 1.1E-30 2.3E-35 242.2 11.4 258 21-284 14-315 (316)
7 PTZ00343 triose or hexose phos 100.0 4.1E-27 8.9E-32 224.0 28.4 251 20-278 45-350 (350)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 2.7E-27 5.9E-32 220.6 24.9 251 24-283 2-300 (302)
9 KOG1443 Predicted integral mem 99.9 9.2E-26 2E-30 203.5 17.7 254 16-277 4-316 (349)
10 PF06027 DUF914: Eukaryotic pr 99.9 3.6E-22 7.9E-27 187.3 24.7 229 50-283 38-312 (334)
11 KOG1444 Nucleotide-sugar trans 99.9 2.9E-22 6.2E-27 182.9 20.0 245 35-286 23-310 (314)
12 COG5070 VRG4 Nucleotide-sugar 99.8 4.7E-20 1E-24 160.0 11.6 261 16-284 3-304 (309)
13 PLN00411 nodulin MtN21 family 99.8 1.5E-16 3.3E-21 151.7 24.3 246 30-281 19-333 (358)
14 KOG1442 GDP-fucose transporter 99.7 3.2E-19 7E-24 159.0 1.8 254 33-290 37-341 (347)
15 PF04142 Nuc_sug_transp: Nucle 99.7 4E-16 8.6E-21 141.3 16.7 181 84-267 17-244 (244)
16 KOG2234 Predicted UDP-galactos 99.7 1.3E-15 2.8E-20 141.2 18.6 194 85-281 93-327 (345)
17 TIGR00950 2A78 Carboxylate/Ami 99.7 1.6E-14 3.4E-19 131.2 23.0 211 53-271 16-259 (260)
18 PRK11453 O-acetylserine/cystei 99.7 1.3E-13 2.9E-18 128.4 28.0 237 34-279 14-290 (299)
19 PRK11272 putative DMT superfam 99.6 1.2E-13 2.5E-18 128.4 24.2 242 25-279 9-288 (292)
20 PRK11689 aromatic amino acid e 99.6 1.2E-13 2.6E-18 128.5 23.8 219 51-278 29-289 (295)
21 TIGR00803 nst UDP-galactose tr 99.6 7.8E-15 1.7E-19 130.9 9.4 159 108-274 2-222 (222)
22 PRK10532 threonine and homoser 99.5 5.3E-12 1.1E-16 117.4 26.0 249 15-280 4-285 (293)
23 PRK15430 putative chlorampheni 99.5 3.2E-12 6.9E-17 119.0 21.7 227 36-277 20-286 (296)
24 TIGR03340 phn_DUF6 phosphonate 99.5 1.2E-11 2.7E-16 114.1 22.6 178 91-273 70-280 (281)
25 KOG3912 Predicted integral mem 99.4 1.8E-11 3.9E-16 110.1 20.1 189 86-277 88-335 (372)
26 COG0697 RhaT Permeases of the 99.4 3.8E-10 8.3E-15 103.0 27.5 180 91-277 77-288 (292)
27 KOG2765 Predicted membrane pro 99.3 2.3E-10 5E-15 106.8 17.3 188 91-281 166-395 (416)
28 KOG2766 Predicted membrane pro 99.2 8E-13 1.7E-17 117.3 -2.7 241 20-277 23-300 (336)
29 PF03151 TPT: Triose-phosphate 99.2 2.3E-10 5.1E-15 95.6 11.8 106 171-276 1-153 (153)
30 TIGR00776 RhaT RhaT L-rhamnose 99.1 1.1E-07 2.5E-12 88.3 24.2 179 92-278 67-290 (290)
31 COG5006 rhtA Threonine/homoser 98.7 9.5E-06 2.1E-10 72.7 23.7 216 55-282 40-288 (292)
32 TIGR00688 rarD rarD protein. T 98.7 2E-06 4.2E-11 78.2 17.9 145 36-194 14-170 (256)
33 COG2962 RarD Predicted permeas 98.7 2E-06 4.4E-11 78.4 17.4 176 92-282 80-289 (293)
34 KOG4510 Permease of the drug/m 98.6 5.8E-08 1.3E-12 87.2 6.4 183 91-278 104-327 (346)
35 PF00892 EamA: EamA-like trans 98.4 1.3E-06 2.7E-11 69.6 7.9 116 36-156 3-124 (126)
36 PF13536 EmrE: Multidrug resis 98.3 1.7E-06 3.6E-11 69.1 6.8 78 82-162 32-110 (113)
37 PF03151 TPT: Triose-phosphate 97.7 0.00088 1.9E-08 55.6 13.1 68 89-158 86-153 (153)
38 KOG4314 Predicted carbohydrate 97.7 0.00018 3.9E-09 62.4 8.0 104 88-195 57-160 (290)
39 PLN00411 nodulin MtN21 family 97.7 0.00042 9.2E-09 66.4 11.2 123 34-160 199-330 (358)
40 TIGR00950 2A78 Carboxylate/Ami 97.7 0.0011 2.5E-08 59.8 13.5 118 34-154 138-260 (260)
41 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.00032 6.8E-09 55.9 6.7 64 92-157 45-108 (111)
42 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.0075 1.6E-07 49.4 13.0 110 170-279 2-125 (129)
43 PRK11272 putative DMT superfam 97.3 0.0044 9.5E-08 57.5 13.0 120 34-159 160-286 (292)
44 PF00892 EamA: EamA-like trans 97.3 0.0013 2.8E-08 51.9 7.7 91 181-275 2-125 (126)
45 TIGR00817 tpt Tpt phosphate/ph 97.2 0.0027 5.8E-08 59.1 10.1 124 34-160 155-295 (302)
46 PF05653 Mg_trans_NIPA: Magnes 97.1 0.0067 1.5E-07 56.8 12.2 67 93-161 59-125 (300)
47 PF06800 Sugar_transport: Suga 97.1 0.06 1.3E-06 49.5 17.3 177 90-273 51-268 (269)
48 PRK15051 4-amino-4-deoxy-L-ara 97.0 0.018 3.9E-07 45.8 11.9 40 236-275 69-108 (111)
49 PRK10532 threonine and homoser 97.0 0.017 3.7E-07 53.6 13.6 68 90-159 214-282 (293)
50 COG2510 Predicted membrane pro 97.0 0.014 3E-07 47.4 10.9 72 85-158 67-139 (140)
51 COG2510 Predicted membrane pro 97.0 0.0038 8.3E-08 50.6 7.5 101 172-275 5-138 (140)
52 PRK11689 aromatic amino acid e 96.9 0.015 3.3E-07 54.0 12.6 67 91-159 222-288 (295)
53 PRK10452 multidrug efflux syst 96.9 0.0037 8.1E-08 50.5 7.2 72 87-160 33-105 (120)
54 PRK11453 O-acetylserine/cystei 96.8 0.017 3.8E-07 53.6 12.1 65 94-160 225-289 (299)
55 PRK02971 4-amino-4-deoxy-L-ara 96.8 0.0069 1.5E-07 49.6 7.9 71 88-160 51-124 (129)
56 TIGR00688 rarD rarD protein. T 96.8 0.023 5.1E-07 51.4 12.3 101 170-274 2-140 (256)
57 PTZ00343 triose or hexose phos 96.7 0.032 6.9E-07 53.3 13.0 65 92-158 284-348 (350)
58 PRK11431 multidrug efflux syst 96.7 0.0087 1.9E-07 47.2 7.5 70 87-158 32-102 (105)
59 COG2076 EmrE Membrane transpor 96.7 0.0073 1.6E-07 47.5 6.9 71 87-159 33-104 (106)
60 PRK10650 multidrug efflux syst 96.6 0.011 2.5E-07 46.8 7.5 68 87-156 38-106 (109)
61 PF08449 UAA: UAA transporter 96.5 0.024 5.3E-07 52.8 10.6 124 34-160 164-299 (303)
62 PRK15430 putative chlorampheni 96.4 0.1 2.2E-06 48.5 14.3 66 91-158 220-285 (296)
63 COG2962 RarD Predicted permeas 96.4 0.046 1E-06 50.3 11.5 107 169-279 6-147 (293)
64 PRK09541 emrE multidrug efflux 96.4 0.013 2.9E-07 46.5 7.0 70 89-160 35-105 (110)
65 PRK10452 multidrug efflux syst 96.4 0.11 2.4E-06 41.9 12.2 41 238-278 65-105 (120)
66 TIGR03340 phn_DUF6 phosphonate 96.3 0.02 4.3E-07 52.7 8.9 61 93-155 220-280 (281)
67 PRK09541 emrE multidrug efflux 96.3 0.13 2.9E-06 40.8 12.3 42 237-278 64-105 (110)
68 PF06027 DUF914: Eukaryotic pr 95.6 0.19 4E-06 47.8 11.9 61 100-162 249-309 (334)
69 PRK10650 multidrug efflux syst 95.6 0.38 8.1E-06 38.2 11.7 104 166-275 3-107 (109)
70 PF05653 Mg_trans_NIPA: Magnes 95.4 0.16 3.5E-06 47.5 10.5 109 167-278 4-124 (300)
71 COG2076 EmrE Membrane transpor 95.2 0.74 1.6E-05 36.3 12.0 40 238-277 65-104 (106)
72 PRK11431 multidrug efflux syst 95.1 0.58 1.3E-05 36.8 11.3 40 238-277 64-103 (105)
73 TIGR00776 RhaT RhaT L-rhamnose 95.1 0.18 3.9E-06 46.8 9.8 67 90-158 217-288 (290)
74 COG0697 RhaT Permeases of the 95.0 0.6 1.3E-05 42.1 13.1 71 87-159 217-288 (292)
75 TIGR00803 nst UDP-galactose tr 94.6 0.26 5.6E-06 43.6 9.3 63 91-155 159-221 (222)
76 PF10639 UPF0546: Uncharacteri 94.6 0.08 1.7E-06 42.2 5.3 70 85-156 42-112 (113)
77 COG5006 rhtA Threonine/homoser 94.5 0.73 1.6E-05 41.9 11.7 59 98-158 224-282 (292)
78 PF00893 Multi_Drug_Res: Small 94.4 0.09 2E-06 40.3 5.2 56 92-149 37-93 (93)
79 PF07857 DUF1632: CEO family ( 94.1 0.078 1.7E-06 48.4 4.8 45 239-283 91-141 (254)
80 PF13536 EmrE: Multidrug resis 93.9 0.098 2.1E-06 41.4 4.6 44 235-278 65-108 (113)
81 KOG2922 Uncharacterized conser 93.6 0.41 8.9E-06 44.8 8.5 68 93-162 73-140 (335)
82 KOG1441 Glucose-6-phosphate/ph 93.0 0.79 1.7E-05 43.2 9.7 131 27-160 166-309 (316)
83 PF00893 Multi_Drug_Res: Small 92.1 1.4 3.1E-05 33.6 8.6 30 238-267 64-93 (93)
84 PRK13499 rhamnose-proton sympo 90.1 2.2 4.8E-05 40.7 9.5 42 238-279 108-156 (345)
85 PF04142 Nuc_sug_transp: Nucle 89.8 0.42 9.1E-06 43.4 4.2 46 236-281 49-94 (244)
86 PF06800 Sugar_transport: Suga 88.4 13 0.00028 34.3 12.8 64 89-154 200-267 (269)
87 PF10639 UPF0546: Uncharacteri 82.6 10 0.00022 30.2 8.0 38 236-273 74-111 (113)
88 KOG1583 UDP-N-acetylglucosamin 77.1 12 0.00027 34.6 7.7 34 123-158 281-314 (330)
89 KOG4510 Permease of the drug/m 73.3 1.8 3.9E-05 39.8 1.4 44 236-279 129-172 (346)
90 PF04657 DUF606: Protein of un 73.2 50 0.0011 27.1 12.5 75 80-155 61-138 (138)
91 KOG2765 Predicted membrane pro 69.9 10 0.00022 36.5 5.6 53 236-288 191-243 (416)
92 PF08507 COPI_assoc: COPI asso 69.4 4.6 9.9E-05 33.1 2.9 34 240-274 70-103 (136)
93 KOG4831 Unnamed protein [Funct 68.1 5.6 0.00012 31.3 2.9 70 85-157 53-124 (125)
94 PF04342 DUF486: Protein of un 66.3 5.7 0.00012 31.2 2.6 29 245-273 77-105 (108)
95 KOG1581 UDP-galactose transpor 63.4 34 0.00073 32.1 7.5 69 84-155 241-310 (327)
96 KOG1582 UDP-galactose transpor 60.8 1.4E+02 0.0031 27.8 10.9 43 117-161 293-335 (367)
97 PRK13499 rhamnose-proton sympo 60.5 46 0.001 31.8 8.2 94 91-186 80-190 (345)
98 KOG0569 Permease of the major 60.3 1.1E+02 0.0025 30.7 11.2 22 249-270 174-195 (485)
99 KOG2234 Predicted UDP-galactos 60.3 1.3E+02 0.0027 28.9 10.9 66 92-159 258-323 (345)
100 KOG1580 UDP-galactose transpor 59.9 33 0.00072 31.2 6.5 148 6-155 122-310 (337)
101 COG3169 Uncharacterized protei 59.5 13 0.00028 28.9 3.4 29 245-273 84-112 (116)
102 COG4975 GlcU Putative glucose 56.8 95 0.0021 28.5 8.9 184 92-278 67-287 (288)
103 PF12794 MscS_TM: Mechanosensi 56.7 17 0.00038 34.5 4.7 87 135-227 126-221 (340)
104 PF11022 DUF2611: Protein of u 54.6 11 0.00023 27.6 2.1 54 248-301 4-59 (71)
105 PF04342 DUF486: Protein of un 52.5 1.1E+02 0.0025 24.0 9.1 62 90-155 40-105 (108)
106 COG3238 Uncharacterized protei 51.7 1.4E+02 0.0031 25.0 9.4 127 24-156 3-144 (150)
107 PF00558 Vpu: Vpu protein; In 51.1 8.5 0.00018 28.8 1.2 18 294-311 48-65 (81)
108 COG3949 Uncharacterized membra 47.6 1.4E+02 0.0031 28.5 8.9 40 98-139 226-272 (349)
109 PF10587 EF-1_beta_acid: Eukar 47.4 6.6 0.00014 23.1 0.1 11 300-310 3-13 (28)
110 PF14283 DUF4366: Domain of un 46.4 8.2 0.00018 34.5 0.6 15 268-282 171-185 (218)
111 PF03605 DcuA_DcuB: Anaerobic 44.7 3E+02 0.0065 26.6 12.5 51 254-304 158-210 (364)
112 PF15471 TMEM171: Transmembran 43.9 18 0.00039 33.2 2.3 25 258-282 161-185 (319)
113 PF14851 FAM176: FAM176 family 43.8 23 0.00049 29.9 2.8 15 263-277 33-47 (153)
114 PRK01637 hypothetical protein; 41.2 11 0.00024 34.9 0.6 40 257-311 247-286 (286)
115 COG2271 UhpC Sugar phosphate p 40.6 35 0.00076 33.7 3.9 57 226-283 154-212 (448)
116 cd01324 cbb3_Oxidase_CcoQ Cyto 39.0 19 0.00041 24.0 1.3 23 261-283 16-38 (48)
117 PF06422 PDR_CDR: CDR ABC tran 38.1 21 0.00046 27.8 1.7 10 300-309 94-103 (103)
118 PF06379 RhaT: L-rhamnose-prot 37.7 2.5E+02 0.0053 26.9 9.0 28 252-279 129-156 (344)
119 KOG2922 Uncharacterized conser 37.4 5.2 0.00011 37.6 -2.1 122 167-300 18-156 (335)
120 PF07444 Ycf66_N: Ycf66 protei 36.5 23 0.00049 26.7 1.6 28 255-282 4-31 (84)
121 PF05545 FixQ: Cbb3-type cytoc 35.5 17 0.00037 24.1 0.7 21 262-282 16-36 (49)
122 PF04657 DUF606: Protein of un 35.4 2.5E+02 0.0053 22.9 11.5 99 173-273 4-138 (138)
123 KOG2592 Tumor differentially e 35.4 41 0.00089 32.6 3.4 59 253-312 293-353 (426)
124 COG4736 CcoQ Cbb3-type cytochr 35.4 25 0.00054 24.7 1.5 26 259-284 13-38 (60)
125 PF15345 TMEM51: Transmembrane 34.0 19 0.00042 32.2 1.0 26 261-286 66-91 (233)
126 COG2851 CitM H+/citrate sympor 33.6 22 0.00048 34.4 1.4 70 239-312 161-230 (433)
127 KOG4085 Uncharacterized conser 33.0 12 0.00026 31.0 -0.5 51 256-312 118-168 (175)
128 PF13038 DUF3899: Domain of un 32.6 20 0.00044 27.0 0.8 21 257-277 3-23 (92)
129 PF05297 Herpes_LMP1: Herpesvi 32.4 15 0.00032 34.1 0.0 69 134-206 72-141 (381)
130 PF05961 Chordopox_A13L: Chord 31.7 58 0.0013 23.4 2.9 24 259-282 5-28 (68)
131 KOG1623 Multitransmembrane pro 29.6 1.9E+02 0.0042 26.2 6.6 18 257-274 187-204 (243)
132 PF04478 Mid2: Mid2 like cell 28.4 37 0.00079 28.5 1.7 23 291-313 98-120 (154)
133 PF12606 RELT: Tumour necrosis 27.8 54 0.0012 22.2 2.1 13 266-278 13-25 (50)
134 KOG0847 Transcription factor, 27.8 26 0.00056 31.2 0.7 21 257-277 199-219 (288)
135 KOG3912 Predicted integral mem 27.1 49 0.0011 30.9 2.4 37 241-277 123-159 (372)
136 PRK12437 prolipoprotein diacyl 26.8 47 0.001 30.5 2.3 24 255-278 234-257 (269)
137 COG4858 Uncharacterized membra 26.5 3.9E+02 0.0083 23.5 7.5 79 49-130 120-204 (226)
138 KOG4482 Sarcoglycan complex, a 26.4 50 0.0011 31.8 2.4 46 257-302 300-346 (449)
139 COG4975 GlcU Putative glucose 25.3 89 0.0019 28.7 3.6 61 89-155 214-282 (288)
140 PF12768 Rax2: Cortical protei 25.1 48 0.001 30.8 2.0 38 265-313 243-281 (281)
141 COG5070 VRG4 Nucleotide-sugar 25.0 75 0.0016 28.7 3.1 64 90-155 230-293 (309)
142 PF02447 GntP_permease: GntP f 24.9 6.9E+02 0.015 24.8 12.7 82 137-218 19-115 (441)
143 PF06365 CD34_antigen: CD34/Po 23.8 73 0.0016 28.1 2.8 22 261-282 107-130 (202)
144 PF14150 YesK: YesK-like prote 23.7 2E+02 0.0044 21.5 4.7 64 123-192 11-79 (81)
145 PRK13108 prolipoprotein diacyl 23.7 90 0.0019 31.1 3.7 24 256-279 254-277 (460)
146 KOG3733 Mucolipidin and relate 23.4 63 0.0014 31.8 2.5 23 19-41 411-433 (566)
147 PF15325 MRI: Modulator of ret 23.1 76 0.0016 24.6 2.4 15 298-312 52-66 (106)
148 KOG1444 Nucleotide-sugar trans 22.6 1.5E+02 0.0032 28.0 4.7 67 92-160 236-302 (314)
149 PF04971 Lysis_S: Lysis protei 22.1 51 0.0011 23.8 1.2 30 254-283 26-61 (68)
150 PF09656 PGPGW: Putative trans 21.1 2.8E+02 0.0061 18.9 5.1 44 142-194 5-48 (53)
151 TIGR00822 EII-Sor PTS system, 21.1 6.5E+02 0.014 23.1 12.4 24 169-192 101-124 (265)
152 PF01102 Glycophorin_A: Glycop 20.1 50 0.0011 26.7 0.9 11 272-282 84-94 (122)
No 1
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-53 Score=372.44 Aligned_cols=304 Identities=47% Similarity=0.814 Sum_probs=269.6
Q ss_pred ccccc--ceEEeeecCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-chhHHHHHHHHHHHHHH--HHhccccc
Q 021318 4 NEEQT--RSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFS-YGWYFTFIQGFVYLVLI--YLQGFTTK 78 (314)
Q Consensus 4 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~-~~~~lt~~q~~~~~~~~--~~~~~~~~ 78 (314)
+|+|+ ++++|+++++-|+|.|+++|.+|+|+.|+.||++||.+++.++|+ ++|.+|++|+++++.+. ..++++++
T Consensus 21 s~e~p~ki~llg~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k 100 (367)
T KOG1582|consen 21 SEEQPSKIKLLGFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTK 100 (367)
T ss_pred cccCCcceeEEeeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeeccc
Confidence 45666 669999999999999999999999999999999999999999987 99999999999986654 45678788
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 79 QMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 79 ~~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
++..|||.|..++.+..++++++|-|+.|++||+|+++|+||.+|||+.+.+++ ++||++.++.+..++++|++.++.
T Consensus 101 ~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIq--GkRY~v~d~~aA~lm~lGli~FTL 178 (367)
T KOG1582|consen 101 RRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQ--GKRYGVHDYIAAMLMSLGLIWFTL 178 (367)
T ss_pred ceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeec--cccccHHHHHHHHHHHHHHHhhhh
Confidence 888999999999999999999999999999999999999999999999999995 589999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh---
Q 021318 159 ADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ--- 235 (314)
Q Consensus 159 ~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~~~~~~s~--- 235 (314)
.|++.+|+|+..|+.++..++++||+.+..||+.+++++. ++.||++|+..+++|+.+..+..+||++.+|++|.+
T Consensus 179 ADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 179 ADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV 257 (367)
T ss_pred cccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence 9999999999999999999999999999999999999874 558999999999999999988999999988866521
Q ss_pred ----------------------------------hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 021318 236 ----------------------------------VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 281 (314)
Q Consensus 236 ----------------------------------v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 281 (314)
+++.||.+++++|+++|.+|+|..+.-|..+++.|+++..+.|+.+
T Consensus 258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 7899999999999999999999999999999999999999988433
Q ss_pred CCCcC-CCCchhhhhhcccccccchhhhcccCCC
Q 021318 282 PIKRT-ATSSFKVNIRKLSFSEREEADEEKRAPV 314 (314)
Q Consensus 282 k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (314)
-.... .++..++ .. ++-|-|+|+|+++.|
T Consensus 338 ~~~~~~~~r~~~~---~~-g~~~~~~~r~~~~~V 367 (367)
T KOG1582|consen 338 IPLASLIRRIVAR---AA-GKVDRSVDRKDPMLV 367 (367)
T ss_pred CchhhHHhhhhhh---hc-cccccccccccccCC
Confidence 22111 1112221 12 677778888888876
No 2
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=316.50 Aligned_cols=262 Identities=29% Similarity=0.503 Sum_probs=228.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc------CCCCchhHHHHHHHHHHHHHHH--Hhccc-ccCCCCchhHHH
Q 021318 18 DRPKWQQFLICSSGFFFGYLVNGVCEEYVYNR------LQFSYGWYFTFIQGFVYLVLIY--LQGFT-TKQMMNPWKTYV 88 (314)
Q Consensus 18 ~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~------~~f~~~~~lt~~q~~~~~~~~~--~~~~~-~~~~~~~~~~y~ 88 (314)
...+.+++++|+.|||++|++||++||+|+++ ++|.++.++.++|.+++.++.+ ++.++ +.+...||++|.
T Consensus 8 ~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~ 87 (327)
T KOG1581|consen 8 MANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYS 87 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHh
Confidence 34567889999999999999999999999764 5799999999999988876654 33333 344567999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCC----
Q 021318 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS---- 164 (314)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~---- 164 (314)
.+|+....+.+++++||+|+|||+++++||||++|||+++.++ +|+||+..+|++.+++.+||.+|...+.+++
T Consensus 88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~ 165 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKS 165 (327)
T ss_pred HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEecCCCCcccc
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999998865432
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHHHHH------------
Q 021318 165 -PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWN------------ 231 (314)
Q Consensus 165 -~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~~~~------------ 231 (314)
..+++.|+.++..++++||+++..||+++++++ .+++++|+|.|++++++....++..|.+++++.
T Consensus 166 g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k-~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di 244 (327)
T KOG1581|consen 166 GRENSPIGILLLFGYLLFDGFTNATQDSLFKKYK-VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDI 244 (327)
T ss_pred CCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCC-ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHH
Confidence 246799999999999999999999999999664 678999999999999888877666666554332
Q ss_pred ----HHH--------------------hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCC
Q 021318 232 ----SCS--------------------QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 232 ----~~s--------------------~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
.|+ .++++||++++++|++.||||+++.||+|+.+|++|+++..+.|+|++
T Consensus 245 ~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~ 319 (327)
T KOG1581|consen 245 LLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKN 319 (327)
T ss_pred HHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhcc
Confidence 221 288999999999999999999999999999999999999999987733
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.7e-42 Score=322.04 Aligned_cols=254 Identities=33% Similarity=0.579 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCC-chhHHHHHHHHHHHHHHHH--hccc-ccCCCCchhHHHHHHHHHHHHHHHH
Q 021318 26 LICSSGFFFGYLVNGVCEEYVYNRLQFS-YGWYFTFIQGFVYLVLIYL--QGFT-TKQMMNPWKTYVKLSAVLMGSHGLT 101 (314)
Q Consensus 26 ~~~~~gi~~~~~~~~~~qe~i~~~~~f~-~~~~lt~~q~~~~~~~~~~--~~~~-~~~~~~~~~~y~~~s~~~~~~~~~~ 101 (314)
++|++|+|++|+.|+++||++++++... +|++++++|++++++.... ...+ +++++.|+++|+++++++.+++.++
T Consensus 2 ~~~~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 2 LICVAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876665 9999999999887665443 2222 4456789999999999999999999
Q ss_pred HHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCc------hHHHHHHH
Q 021318 102 KGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNF------SMIGVIMI 175 (314)
Q Consensus 102 n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~------~~~G~~l~ 175 (314)
|.||+|+|+|+++++||++|+++|++++++ +||||+++||++++++++|++++..+|.+.+.+. ...|++++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll 159 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILL 159 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHH
Confidence 999999999999999999999999999999 8999999999999999999999999886543211 23499999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHh--hchHHHHHH----------------H-----
Q 021318 176 SGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFKAWN----------------S----- 232 (314)
Q Consensus 176 l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~--~g~l~~~~~----------------~----- 232 (314)
++|.++||+++++|||++++++. +++|+++|+|++++|+.++..+. .+++.+.+. .
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 67999999999999998887666 666543221 0
Q ss_pred ---------------HHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCC
Q 021318 233 ---------------CSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 233 ---------------~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
++.++++||++++++|+++|||++++.||+|+++++.|+.+|++.|+|+|
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 11288999999999999999999999999999999999999999987765
No 4
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=304.44 Aligned_cols=259 Identities=28% Similarity=0.465 Sum_probs=224.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------CCCCchhHHHHHHHHHHHHHHHH-hcccc--cCCCCchh
Q 021318 18 DRPKWQQFLICSSGFFFGYLVNGVCEEYVYNR---------LQFSYGWYFTFIQGFVYLVLIYL-QGFTT--KQMMNPWK 85 (314)
Q Consensus 18 ~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~---------~~f~~~~~lt~~q~~~~~~~~~~-~~~~~--~~~~~~~~ 85 (314)
-+|...++.+|+.||+.||.+||+.||+|.+. ++|.+...+.|+|+.+..++.-+ ...|+ ..++.|-+
T Consensus 7 ~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~ 86 (337)
T KOG1580|consen 7 WLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTK 86 (337)
T ss_pred ccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcch
Confidence 46888899999999999999999999999752 56889999999999887666532 22222 23456789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCC-
Q 021318 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS- 164 (314)
Q Consensus 86 ~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~- 164 (314)
.|...++.|.+.++.+|.|++|+|||++++.|||+|||||++++++ .+|+|+|++|.++++++.||+++++.+.+..
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999999999999999999999999999 8999999999999999999999999876542
Q ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHHHH------------
Q 021318 165 --PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAW------------ 230 (314)
Q Consensus 165 --~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~~~------------ 230 (314)
.....+|-+++++|+.+||+++..|||+.+.+.+ +.-+||+|+|+++..++-..++.+||+|..+
T Consensus 165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~ 243 (337)
T KOG1580|consen 165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWD 243 (337)
T ss_pred CcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHH
Confidence 2345789999999999999999999999988764 3467899999999998888888899987632
Q ss_pred ----H--------------------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 231 ----N--------------------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 231 ----~--------------------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
+ .||.++++||++++++|+++|+||++..||+|..+++.|........+
T Consensus 244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 1 133489999999999999999999999999999999999999886654
No 5
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-34 Score=251.91 Aligned_cols=250 Identities=26% Similarity=0.395 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HHhcccccCCCCchhHHHHHHHHHHHHHHHHHH
Q 021318 26 LICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--YLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKG 103 (314)
Q Consensus 26 ~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~--~~~~~~~~~~~~~~~~y~~~s~~~~~~~~~~n~ 103 (314)
+..+++++.+||.+.+..|.+.+. ....++.+|++|++..++-- +...+...+++.|.|.|+....+++..++++|.
T Consensus 5 ~~ai~~vf~GCcsnvv~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~ 83 (330)
T KOG1583|consen 5 AAAISLVFGGCCSNVVFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNY 83 (330)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccc
Confidence 456789999999999999999854 45678999999987655432 224444456789999999988888889999999
Q ss_pred HhhC-CchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC---------CC----C--c
Q 021318 104 SLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT---------SP----N--F 167 (314)
Q Consensus 104 aL~y-vs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~---------~~----~--~ 167 (314)
|++| +|+|.|+++||.+++.+|++++++ .||||+.+||.+++++++|+++++....++ +. + .
T Consensus 84 al~f~I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~ 161 (330)
T KOG1583|consen 84 ALKFNIPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFW 161 (330)
T ss_pred eeeecccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchH
Confidence 9999 999999999999999999999999 899999999999999999999998754322 01 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHH-------------------
Q 021318 168 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFK------------------- 228 (314)
Q Consensus 168 ~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~------------------- 228 (314)
...|+.++.++++.+|..+++||+++++|++ ++-|.+||+|++++|+++.. .++..+
T Consensus 162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-h~~EalFytH~LsLP~Flf~---~~div~~~~~~~~se~~~~p~~g~~ 237 (330)
T KOG1583|consen 162 WLIGIALLVFALLLSAYMGIYQETTYQKYGK-HWKEALFYTHFLSLPLFLFM---GDDIVSHWRLAFKSESYLIPLLGFK 237 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhccchHHHh---cchHHHHHHHHhcCcceeccccCcc
Confidence 3579999999999999999999999999996 57999999999999998753 111111
Q ss_pred ---HH-----H-----HHH----------------hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 229 ---AW-----N-----SCS----------------QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 229 ---~~-----~-----~~s----------------~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
.| | .|. .+-++||++++++|+++|+||+|+++|+|..+|++|..+|+....
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 1 221 166899999999999999999999999999999999999997655
Q ss_pred CCC
Q 021318 280 DKP 282 (314)
Q Consensus 280 ~~k 282 (314)
+.|
T Consensus 318 ~~~ 320 (330)
T KOG1583|consen 318 HPK 320 (330)
T ss_pred Ccc
Confidence 444
No 6
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=242.16 Aligned_cols=258 Identities=18% Similarity=0.282 Sum_probs=218.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-h--ccccc---CCCCchhHHHHHHHHH
Q 021318 21 KWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-Q--GFTTK---QMMNPWKTYVKLSAVL 94 (314)
Q Consensus 21 ~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~-~--~~~~~---~~~~~~~~y~~~s~~~ 94 (314)
+.....++.+-||++...+.++++++++..+|++|.++|.+|+++++..... + +..++ +++.+++..+++++++
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~ 93 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF 93 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Confidence 5666778899999999999999999998889999999999998776654432 2 22221 2456899999999999
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHH
Q 021318 95 MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIM 174 (314)
Q Consensus 95 ~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l 174 (314)
+.+++++|.|++|+|++++|++|++.|+++.++++++ .+|++++..++++++++.||++++.+| .++++.|+..
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e----~~fn~~G~i~ 167 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTE----LSFNLFGFIS 167 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeecc----ccccHHHHHH
Confidence 9999999999999999999999999999999999999 899999999999999999999999987 4689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-CCcChHHHHHHHHHHHHHHHH-HHHH-hhchHH---H-------------------H
Q 021318 175 ISGALIMDSFLGNLQEAIFTMN-PETTQMEMLFCSTVVGLPMLI-PPML-LTGELF---K-------------------A 229 (314)
Q Consensus 175 ~l~s~~~~al~~v~q~~l~~~~-~~~~~~~~~~y~~~~s~~~~~-~~~~-~~g~l~---~-------------------~ 229 (314)
++.+.+..++++++++++++++ .+.+++++++|+++++...++ |... .+++.. . +
T Consensus 168 a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~ 247 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFL 247 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999643 246789999999999988887 6432 222211 0 0
Q ss_pred HHHH-------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCC
Q 021318 230 WNSC-------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 284 (314)
Q Consensus 230 ~~~~-------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~ 284 (314)
.|.. +..+++|+++.++.|+++|++|+|+.|..|++++++|+++|++.|.++|++
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 0110 116789999999999999999999999999999999999999999887765
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=4.1e-27 Score=223.96 Aligned_cols=251 Identities=14% Similarity=0.163 Sum_probs=200.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHH--H-hcccccCC----CCchhHHHHHHH
Q 021318 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIY--L-QGFTTKQM----MNPWKTYVKLSA 92 (314)
Q Consensus 20 ~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~--~-~~~~~~~~----~~~~~~y~~~s~ 92 (314)
+..+++...+..||++...+.++++++++ .+++|++++++|++++.++.. . .+.++.++ +..+++.+++++
T Consensus 45 ~~~~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 45 NFKWKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999984 488999999999988754332 1 22332222 124567889999
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHH
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGV 172 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~ 172 (314)
++......+|.|++++++++++++|++.|++++++++++ +|||++++++++++++++||++.+.+| .++++.|+
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~----~~~~~~G~ 196 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKE----LHFTWLAF 196 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheeccc----chhHHHHH
Confidence 987777888999999999999999999999999999999 899999999999999999999998755 35678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC----CcChHHHHHHHHHHHHHHHHHHHH-hhch----HH-------------H--
Q 021318 173 IMISGALIMDSFLGNLQEAIFTMNP----ETTQMEMLFCSTVVGLPMLIPPML-LTGE----LF-------------K-- 228 (314)
Q Consensus 173 ~l~l~s~~~~al~~v~q~~l~~~~~----~~~~~~~~~y~~~~s~~~~~~~~~-~~g~----l~-------------~-- 228 (314)
+++++|.+++|+++++.||.+++++ +.++.++..|+.+++..+++|... .++. .+ .
T Consensus 197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l 276 (350)
T PTZ00343 197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIII 276 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHH
Confidence 9999999999999999999887643 234555555566677666666432 2110 00 0
Q ss_pred -----------HHHHH-------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 229 -----------AWNSC-------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 229 -----------~~~~~-------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
.+|.+ +..+++|+++++++|+++|||++|+.|++|.+++++|+++|++.|
T Consensus 277 ~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 277 FKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 01211 227789999999999999999999999999999999999999874
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=2.7e-27 Score=220.58 Aligned_cols=251 Identities=18% Similarity=0.240 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHh---ccccc--CCCCchhHHHHHHHHHHHHH
Q 021318 24 QFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYLQ---GFTTK--QMMNPWKTYVKLSAVLMGSH 98 (314)
Q Consensus 24 ~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~~---~~~~~--~~~~~~~~y~~~s~~~~~~~ 98 (314)
+....+..||.++..+.++||++++ +|++|.++++.|+++.++...+. +.+++ .++.+++..++.+++++.+.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999884 58999999999988865544322 22221 12335677888899988999
Q ss_pred HHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHH
Q 021318 99 GLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGA 178 (314)
Q Consensus 99 ~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s 178 (314)
.++|.|++|+|+++++++|++.|++++++++++ +|||++++++++++++++|+++....+ .+++..|++++++|
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~----~~~~~~G~~~~l~a 153 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTE----LSFNWAGFLSAMIS 153 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCc----ccccHHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999999999999998765433 24567899999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhch-------H------------HH-H---------
Q 021318 179 LIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGE-------L------------FK-A--------- 229 (314)
Q Consensus 179 ~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~-------l------------~~-~--------- 229 (314)
.+++|+++++.||..+++ +.++.+++.|+.+++...++|.....++ . +. .
T Consensus 154 ~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 154 NITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999987632 2456788889888877666665332110 0 00 0
Q ss_pred -HHH-------------HHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCC
Q 021318 230 -WNS-------------CSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 230 -~~~-------------~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
++. .+..++++|++++++|++++||++|+.+++|.++++.|+++|++.|++|++
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 010 022788999999999999999999999999999999999999988765544
No 9
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.94 E-value=9.2e-26 Score=203.45 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=197.8
Q ss_pred cCCCchhHH----HHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH----HHhccccc--CCCCchh
Q 021318 16 LTDRPKWQQ----FLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI----YLQGFTTK--QMMNPWK 85 (314)
Q Consensus 16 ~~~~~~~~~----l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~----~~~~~~~~--~~~~~~~ 85 (314)
++++|+.++ .+..+.++|++.+.-.++|++.- .+|++|++++.+|.++--.+. .+...+.+ +....|+
T Consensus 4 ~~~~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~--~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~ 81 (349)
T KOG1443|consen 4 WALDNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLT--KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWR 81 (349)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHH
Confidence 344555443 33445677777776677777764 559999999999987732221 12222221 2345687
Q ss_pred HHH----HHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCC
Q 021318 86 TYV----KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 161 (314)
Q Consensus 86 ~y~----~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~ 161 (314)
.|+ |.++...++++++|+|++|++++.|+|.||++++|+.+++.+++ -||.+|.-.+.++++.+|++++++.+
T Consensus 82 ~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflft~Ks- 158 (349)
T KOG1443|consen 82 DYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLFTYKS- 158 (349)
T ss_pred HHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEEEecc-
Confidence 776 88999999999999999999999999999999999999999994 59999999999999999999999987
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CcChHHHHHHHHHHHHHHHHHH-HHhhchH------------
Q 021318 162 QTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP--ETTQMEMLFCSTVVGLPMLIPP-MLLTGEL------------ 226 (314)
Q Consensus 162 ~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~--~~~~~~~~~y~~~~s~~~~~~~-~~~~g~l------------ 226 (314)
.+++..|+.++..|.++.|+++.+.+.++++++ +.+|..++++..++-...++|. +..+|..
T Consensus 159 ---Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d 235 (349)
T KOG1443|consen 159 ---TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQD 235 (349)
T ss_pred ---cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcC
Confidence 468999999999999999999999999998875 4578888988777655444443 3344421
Q ss_pred ----HHHH---------HHH-----------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhc
Q 021318 227 ----FKAW---------NSC-----------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 276 (314)
Q Consensus 227 ----~~~~---------~~~-----------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~ 276 (314)
+..+ +++ +.++..|.+.+++++..+.++.++..+|.|..+...|+..|..
T Consensus 236 ~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 236 TGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 1000 111 2378999999999999999999999999999999999999944
Q ss_pred c
Q 021318 277 P 277 (314)
Q Consensus 277 ~ 277 (314)
.
T Consensus 316 ~ 316 (349)
T KOG1443|consen 316 E 316 (349)
T ss_pred C
Confidence 3
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=3.6e-22 Score=187.32 Aligned_cols=229 Identities=15% Similarity=0.250 Sum_probs=173.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHH-Hhcccc------cCCCCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchH
Q 021318 50 LQFSYGWYFTFIQGFVYLVLIY-LQGFTT------KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVL 122 (314)
Q Consensus 50 ~~f~~~~~lt~~q~~~~~~~~~-~~~~~~------~~~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi 122 (314)
.+.+.|.+-++...+...+... ...+|. ...+.+||+|+.+|++...++.+.+.|++|.|++..+++.++..+
T Consensus 38 ~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~ 117 (334)
T PF06027_consen 38 KGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIP 117 (334)
T ss_pred cCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhH
Confidence 3677888877666544222111 111111 112468999999999999999999999999999999999999999
Q ss_pred hHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 021318 123 PVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP 197 (314)
Q Consensus 123 ~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~-----~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~ 197 (314)
+++++++++ +|+||++.|++++++.++|+.+....|... +++....|.+++++|++++|+++++||+..++.+
T Consensus 118 ~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~ 195 (334)
T PF06027_consen 118 FVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP 195 (334)
T ss_pred HHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999 999999999999999999999998887543 1345689999999999999999999999988654
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHH-hhc-hHHH------------HHHHH---------------Hh----h-hhhhhHH
Q 021318 198 ETTQMEMLFCSTVVGLPMLIPPML-LTG-ELFK------------AWNSC---------------SQ----V-TTARKAV 243 (314)
Q Consensus 198 ~~~~~~~~~y~~~~s~~~~~~~~~-~~g-~l~~------------~~~~~---------------s~----v-~~~rki~ 243 (314)
..+.+....++++++..+... .+. ++.. ....| ++ + ..+..+.
T Consensus 196 ---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ 272 (334)
T PF06027_consen 196 ---RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFY 272 (334)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHH
Confidence 466666666666665544321 111 1100 00111 11 2 2455788
Q ss_pred HHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCC
Q 021318 244 TLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 244 sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
++++++++||+++++..++|.+++++|..+|+....++.+
T Consensus 273 ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 273 ALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 9999999999999999999999999999999988755443
No 11
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.9e-22 Score=182.87 Aligned_cols=245 Identities=18% Similarity=0.250 Sum_probs=200.0
Q ss_pred HHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-hccc--c--cCCCCchhHHHHHHHHHHHHHHHHHHHhhCCc
Q 021318 35 GYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-QGFT--T--KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLN 109 (314)
Q Consensus 35 ~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~-~~~~--~--~~~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs 109 (314)
+-+.-.+.|+.+.+.++||...++...|.+++++.... +..+ + +-.....|+++|+++++.++...+..+++|++
T Consensus 23 sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~ln 102 (314)
T KOG1444|consen 23 SSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLN 102 (314)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccC
Confidence 33444677899998888888888888999887665443 2222 1 11234568899999999999999999999999
Q ss_pred hhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 021318 110 YPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQ 189 (314)
Q Consensus 110 ~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q 189 (314)
+|+++++|+.+|+.+++.+..+ +|+|.+...|.++..+.+|......+|. +++..|+.|++.++++.+...++.
T Consensus 103 Vpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY~w~~~n~~~~a~~~v~~ 176 (314)
T KOG1444|consen 103 VPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGYSWALANCLTTAAFVVYV 176 (314)
T ss_pred chHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccc----eecchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999998888774 567889999999999999999999
Q ss_pred HHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHH-------------------------HHHHHH----------
Q 021318 190 EAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFK-------------------------AWNSCS---------- 234 (314)
Q Consensus 190 ~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~-------------------------~~~~~s---------- 234 (314)
|+..+..+ .+.+++++|.+++++|......+.+||+.. .++.|+
T Consensus 177 kk~vd~~~-l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAt 255 (314)
T KOG1444|consen 177 KKSVDSAN-LNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSAT 255 (314)
T ss_pred HHhhcccc-ccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 98777554 466899999999999988877767776330 001221
Q ss_pred ---hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCCcC
Q 021318 235 ---QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT 286 (314)
Q Consensus 235 ---~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~ 286 (314)
.+|...+..+.+..++.+|+|+++.+.+|..+.+.|..+|++.+.++|+.++
T Consensus 256 T~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 256 TTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred ceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 1776677778888888889999999999999999999999999977665544
No 12
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.83 E-value=4.7e-20 Score=159.98 Aligned_cols=261 Identities=16% Similarity=0.228 Sum_probs=201.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH-HHhcccc-cCCCCchhHHHHHHHH
Q 021318 16 LTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI-YLQGFTT-KQMMNPWKTYVKLSAV 93 (314)
Q Consensus 16 ~~~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~-~~~~~~~-~~~~~~~~~y~~~s~~ 93 (314)
..+.|....+..|.+.|.. ...++++.+..+|+....+.++|..++.+.. .++..+- .-|....++|.+++++
T Consensus 3 ~a~s~~~~~lsYc~sSIlm-----TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfL 77 (309)
T COG5070 3 KAVSELTASLSYCFSSILM-----TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFL 77 (309)
T ss_pred cccccchHHHHHHHHHHHH-----HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHH
Confidence 3455666667777776665 5668899999999999999999998875433 3332211 1123356778999999
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCC---CCchHH
Q 021318 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS---PNFSMI 170 (314)
Q Consensus 94 ~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~---~~~~~~ 170 (314)
...++..+..||+|+++|.|+++|.+++|.++..+.++ +|+|.+..+..+.+++++.-.....+|.+.. ...-..
T Consensus 78 Lv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~ 155 (309)
T COG5070 78 LVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNP 155 (309)
T ss_pred HHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCC
Confidence 99999999999999999999999999999999999999 8999999999999999999988888886331 112246
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchH-----H-----H-----HH-----
Q 021318 171 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGEL-----F-----K-----AW----- 230 (314)
Q Consensus 171 G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l-----~-----~-----~~----- 230 (314)
|++|+..+++.++.+-...++..+... ....+.+||+|++++|.++...+...+. . + .+
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltN-f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 999999999999887665554444322 1247889999999999987754433221 0 0 01
Q ss_pred ---HHH-------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCC
Q 021318 231 ---NSC-------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 284 (314)
Q Consensus 231 ---~~~-------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~ 284 (314)
+.| +.+|.+.|....+.|.++||+|.+...+..+.+-+....+|.+.|.++++.
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~ 304 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQN 304 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 238999999999999999999999999999999999999999998775544
No 13
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.77 E-value=1.5e-16 Score=151.71 Aligned_cols=246 Identities=9% Similarity=0.053 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH----HHhcccccCCCCchh---HHHHHHHHHHHHHHHHH
Q 021318 30 SGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI----YLQGFTTKQMMNPWK---TYVKLSAVLMGSHGLTK 102 (314)
Q Consensus 30 ~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~----~~~~~~~~~~~~~~~---~y~~~s~~~~~~~~~~n 102 (314)
..+..+|..+..+-+..++. +.+ |..+.+.=+.+.+++. +.+..+.+.++.+|+ .+..++++......+.+
T Consensus 19 ~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~ 96 (358)
T PLN00411 19 LATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGY 96 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666543 322 3334555544443222 112111111222343 34444444444556899
Q ss_pred HHhhCCchhHHHHHhhcchHhHhhhhhhcccc------ccccChhHHHHHHHHHHhhheeEecCCC--------------
Q 021318 103 GSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGL------RRKYPAHEYVSALLLVVGLILFTLADAQ-------------- 162 (314)
Q Consensus 103 ~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl------~~r~s~~~~lsl~li~~Gv~l~~~~~~~-------------- 162 (314)
.+++|+|.+...++-++.|+++++++.++ + |||.+.++++++++.++|+.+....+..
T Consensus 97 ~gl~~tsa~~asll~~~~P~~~~lla~~~--~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~ 174 (358)
T PLN00411 97 IGIEYSNPTLASAISNITPALTFILAIIF--RMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFR 174 (358)
T ss_pred HHHhhccHHHHHHHHHhhHHHHHHHHHHH--HhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccc
Confidence 99999999999999999999999999988 4 8999999999999999999875532110
Q ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHH-HHHHHHHHHHHHHHhhch---------
Q 021318 163 -------TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFC-STVVGLPMLIPPMLLTGE--------- 225 (314)
Q Consensus 163 -------~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y-~~~~s~~~~~~~~~~~g~--------- 225 (314)
.+......|..++++|++++|++++.++|..++++. .....++ +...+++...+....+++
T Consensus 175 ~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 252 (358)
T PLN00411 175 QLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHF 252 (358)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCcccceecc
Confidence 001123569999999999999999999999887753 2233333 222334433333222211
Q ss_pred ---HHH-------------HHH---------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 021318 226 ---LFK-------------AWN---------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 280 (314)
Q Consensus 226 ---l~~-------------~~~---------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 280 (314)
... .|+ .++....+.|++++++|++++||++++.+++|.++++.|+++.++.|++
T Consensus 253 ~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 253 DITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000 011 1133778999999999999999999999999999999999998875543
Q ss_pred C
Q 021318 281 K 281 (314)
Q Consensus 281 ~ 281 (314)
|
T Consensus 333 ~ 333 (358)
T PLN00411 333 E 333 (358)
T ss_pred h
Confidence 3
No 14
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.2e-19 Score=158.98 Aligned_cols=254 Identities=16% Similarity=0.172 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHHHHHHHH-H---hc-----ccccC---CCCchhHHHHHHHHHHHHH
Q 021318 33 FFGYLVNGVCEEYVYNR--LQFSYGWYFTFIQGFVYLVLIY-L---QG-----FTTKQ---MMNPWKTYVKLSAVLMGSH 98 (314)
Q Consensus 33 ~~~~~~~~~~qe~i~~~--~~f~~~~~lt~~q~~~~~~~~~-~---~~-----~~~~~---~~~~~~~y~~~s~~~~~~~ 98 (314)
+.+-+...+.++++++. -..+.|.+.|+.|+++...++. + .. +.-+. +....++.+|+++++.+++
T Consensus 37 wv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI 116 (347)
T KOG1442|consen 37 WVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMI 116 (347)
T ss_pred eeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeeh
Confidence 33444456667887765 3467899999999998654432 1 11 11111 1123467889999999999
Q ss_pred HHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHH
Q 021318 99 GLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGA 178 (314)
Q Consensus 99 ~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s 178 (314)
.++|++|+|+++++|.+.|+.+.+|+.++++++ +|+|-+..-..+++++++|--+-.-.|+. ....++.|.++...|
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~-~~~ls~~GvifGVla 193 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGS-TGTLSWIGVIFGVLA 193 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheeccccccc-cCccchhhhHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999996654433322 235679999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHHH-----------HH------HHH-------
Q 021318 179 LIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKA-----------WN------SCS------- 234 (314)
Q Consensus 179 ~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~~-----------~~------~~s------- 234 (314)
.++-|+-+++.+|.....+ ..-|.+.+|+|+.++.+++|.+.+.||+-.. |. .++
T Consensus 194 Sl~vAlnaiytkk~l~~v~-~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT 272 (347)
T KOG1442|consen 194 SLAVALNAIYTKKVLPPVG-DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT 272 (347)
T ss_pred HHHHHHHHHhhheeccccc-CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee
Confidence 9999999999997655433 2358889999999999999988777765321 10 111
Q ss_pred -------------hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCCcCCCCc
Q 021318 235 -------------QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSS 290 (314)
Q Consensus 235 -------------~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~~ 290 (314)
.-++.|-+...++++.+++|.-+..-|-|..++++|...|.+.|.+|.++..+.+|
T Consensus 273 g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s 341 (347)
T KOG1442|consen 273 GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRS 341 (347)
T ss_pred eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCC
Confidence 14677888899999999999999999999999999999999999887766555554
No 15
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.71 E-value=4e-16 Score=141.34 Aligned_cols=181 Identities=18% Similarity=0.302 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC
Q 021318 84 WKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 163 (314)
Q Consensus 84 ~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~ 163 (314)
..++..+|++|+..+.+.+.++++++.+++++.+.+++++++++++++ +|||.+.+||++++++++|+++...++...
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 466788999999999999999999999999999999999999999999 999999999999999999999988765432
Q ss_pred C-------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhh-------
Q 021318 164 S-------------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT------- 223 (314)
Q Consensus 164 ~-------------~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~------- 223 (314)
. ......|+.+++.+++++|+.+++.||++|+.+ .+.+..+....+++.++.++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 0 112478999999999999999999999999875 3445555555666666655543221
Q ss_pred chHHHHHH-----------HH----------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHH
Q 021318 224 GELFKAWN-----------SC----------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 267 (314)
Q Consensus 224 g~l~~~~~-----------~~----------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv 267 (314)
.++++.++ .. +..+.+.-+++.++|+++||.++|....+|..+|
T Consensus 174 ~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 174 SGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred CCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 12222221 00 0145566778889999999999999999998754
No 16
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=141.22 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC-
Q 021318 85 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT- 163 (314)
Q Consensus 85 ~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~- 163 (314)
.+...++++|...+-+.+.++.+++..++++.-..++..++++++++ ++||.+++||.++++.+.|+++......+.
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 45667899999999999999999999999999999999999999999 999999999999999999999988432211
Q ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc-------hHHHHH
Q 021318 164 ------SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-------ELFKAW 230 (314)
Q Consensus 164 ------~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g-------~l~~~~ 230 (314)
.....+.|+..++.+|+++|+.++|.||++|+.+ .+.|..+.....++.++.+...+.++ ++++++
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~ 249 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGY 249 (345)
T ss_pred CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccc
Confidence 1235689999999999999999999999998764 34454555555566666555443221 122221
Q ss_pred H--------------HH-H------------hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 021318 231 N--------------SC-S------------QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 281 (314)
Q Consensus 231 ~--------------~~-s------------~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 281 (314)
+ .+ + -...+..+++.+.|+++||.++|....+|+.+|+..+.+|+..+.+.
T Consensus 250 s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 250 SSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred cHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 1 00 0 14556677888899999999999999999999999999999665544
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.68 E-value=1.6e-14 Score=131.17 Aligned_cols=211 Identities=16% Similarity=0.125 Sum_probs=154.1
Q ss_pred CchhHHHHHHHHHHHHHHHH-hcccccCCCCchhHHHHHHHH-HHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhh
Q 021318 53 SYGWYFTFIQGFVYLVLIYL-QGFTTKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF 130 (314)
Q Consensus 53 ~~~~~lt~~q~~~~~~~~~~-~~~~~~~~~~~~~~y~~~s~~-~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l 130 (314)
..+..+++..++...+.... ...+ +++.+++.++..+.+ ..+...+.+.|++|++.+...+..++.|+++++++.+
T Consensus 16 ~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l 93 (260)
T TIGR00950 16 VPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDL 93 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHH
Confidence 34667777776665443322 1222 222345556666544 6788889999999999999999999999999999999
Q ss_pred ccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHH
Q 021318 131 IPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTV 210 (314)
Q Consensus 131 ~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~ 210 (314)
+ +|||.++++++++++.++|+.+....+. .+.+..|+.+.+++.++++.++++.++..++.+. ++.....+...
T Consensus 94 ~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~ 167 (260)
T TIGR00950 94 M--GKERPRKLVLLAAVLGLAGAVLLLSDGN---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLL 167 (260)
T ss_pred H--ccCCCcHHHHHHHHHHHHhHHhhccCCc---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHH
Confidence 9 8999999999999999999988764432 2345789999999999999999999998765542 23333334455
Q ss_pred HHHHHHHHHHHhhch-------HHH-HH-----------------------HHHHhhhhhhhHHHHhhhhhhcCCCcchh
Q 021318 211 VGLPMLIPPMLLTGE-------LFK-AW-----------------------NSCSQVTTARKAVTLLLSYLIFTKPLTEQ 259 (314)
Q Consensus 211 ~s~~~~~~~~~~~g~-------l~~-~~-----------------------~~~s~v~~~rki~sills~~~fg~~~t~~ 259 (314)
++.+...+.....++ .+. .. ...+.+..+.|+++.+++++++||++++.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~ 247 (260)
T TIGR00950 168 LGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP 247 (260)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 555555554332221 010 00 01123778999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q 021318 260 HGTGLLLIAMGI 271 (314)
Q Consensus 260 ~~iG~~lv~~Gv 271 (314)
+++|..+++.|+
T Consensus 248 ~~~G~~li~~g~ 259 (260)
T TIGR00950 248 QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 18
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.66 E-value=1.3e-13 Score=128.45 Aligned_cols=237 Identities=12% Similarity=0.196 Sum_probs=156.5
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHH-HHHHHHHHHHHhhC-Cchh
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAF-LNYP 111 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~y~~~s~~-~~~~~~~~n~aL~y-vs~~ 111 (314)
..+.......+... ++.+ |..+++..+.+.+........++ +.+++.....++. ......+.+.+++| ++.+
T Consensus 14 ~~Wg~~~~~~k~~~--~~~~-p~~~~~~R~~~a~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~ 87 (299)
T PRK11453 14 VVWGLNFVVIKVGL--HNMP-PLMLAGLRFMLVAFPAIFFVARP---KVPLNLLLGYGLTISFGQFAFLFCAINFGMPAG 87 (299)
T ss_pred HHHhhhHHHHHHHH--hcCC-HHHHHHHHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 33444444444444 2344 77888888766433222211111 2234444444443 33444566788888 7888
Q ss_pred HHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 021318 112 AQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEA 191 (314)
Q Consensus 112 ~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~ 191 (314)
...++-++.|++++++++++ +|||.+.++++++++..+|+.+....+.. ..+.+..|..+.+++.+++|.++++++|
T Consensus 88 ~a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~~~~~~~G~~l~l~aal~~a~~~v~~~~ 164 (299)
T PRK11453 88 LASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDSLN-GQHVAMLGFMLTLAAAFSWACGNIFNKK 164 (299)
T ss_pred HHHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhccccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999 89999999999999999999887654321 1233567999999999999999999999
Q ss_pred HHhhCCCcChHHHHHHHHHHH-HHHHHHHHHhhch-------------HHHHH---------------H---------HH
Q 021318 192 IFTMNPETTQMEMLFCSTVVG-LPMLIPPMLLTGE-------------LFKAW---------------N---------SC 233 (314)
Q Consensus 192 l~~~~~~~~~~~~~~y~~~~s-~~~~~~~~~~~g~-------------l~~~~---------------~---------~~ 233 (314)
..++++........++...++ .|+.......+++ .+..+ + ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~ 244 (299)
T PRK11453 165 IMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRV 244 (299)
T ss_pred HhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 766543222233334433332 2222221111111 00000 0 11
Q ss_pred HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 234 SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 234 s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
+.+..+.|+++.++|++++||++++.+++|.++++.|+++..+.++
T Consensus 245 s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 245 APLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 2267889999999999999999999999999999999998877664
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.63 E-value=1.2e-13 Score=128.38 Aligned_cols=242 Identities=13% Similarity=0.067 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HHhcccc-cCCCCchhHHHHHHHH-HHHHHHH
Q 021318 25 FLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--YLQGFTT-KQMMNPWKTYVKLSAV-LMGSHGL 100 (314)
Q Consensus 25 l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~--~~~~~~~-~~~~~~~~~y~~~s~~-~~~~~~~ 100 (314)
+..+.......+....+.-+... ++. .|..+++..+++..+.. +....+. .+++.+++.....+.+ ......+
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~--~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGV--ESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHh--ccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333 233 37788888877654332 2221111 1122234445555554 3456677
Q ss_pred HHHHh-hCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHH
Q 021318 101 TKGSL-AFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGAL 179 (314)
Q Consensus 101 ~n~aL-~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~ 179 (314)
.+.+. ++++.+...+.-++.|+++++++. + +|||.++++++++++..+|+.+...++. .+.+..|..+.+++.
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~-~--~~e~~~~~~~~~~~la~~Gv~ll~~~~~---~~~~~~G~l~~l~a~ 159 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSR-L--FGIRTRKLEWLGIAIGLAGIVLLNSGGN---LSGNPWGAILILIAS 159 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHH-H--hcccCchhHHHHHHHHHHhHHHHhcCcc---cccchHHHHHHHHHH
Confidence 88888 999999999999999999999997 4 5899999999999999999988754321 123467999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhch---------HHHH---------------HH----
Q 021318 180 IMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGE---------LFKA---------------WN---- 231 (314)
Q Consensus 180 ~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~---------l~~~---------------~~---- 231 (314)
+++|.+++..+|..+++ +.....+...++.+...+.....++ .+.. ++
T Consensus 160 ~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~ 235 (292)
T PRK11272 160 ASWAFGSVWSSRLPLPV----GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235 (292)
T ss_pred HHHHHHHHHHHhcCCCc----chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999864322 2233344444444433332221111 0100 00
Q ss_pred -----HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 232 -----SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 232 -----~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
..+....+.|+++.++|++++||++|+.+++|.++++.|+.+.+..++
T Consensus 236 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 236 NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 112367899999999999999999999999999999999999876544
No 20
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.63 E-value=1.2e-13 Score=128.53 Aligned_cols=219 Identities=12% Similarity=0.027 Sum_probs=144.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHHHHHHhhC----CchhHHHHHhhcchHhHhh
Q 021318 51 QFSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAF----LNYPAQLMFKSTKVLPVMV 126 (314)
Q Consensus 51 ~f~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~y~~~s~~~~~~~~~~n~aL~y----vs~~~~~i~ks~~pi~v~l 126 (314)
.++ |..+.++-+.+..++......+++.++.+++....-++.+.....+.+.+++| .+.....+.-++.|+++++
T Consensus 29 ~~~-P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~l 107 (295)
T PRK11689 29 SLG-PVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTIL 107 (295)
T ss_pred cCC-hHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHH
Confidence 344 77777777666544333221122222223333333344466667777778766 4445556778889999999
Q ss_pred hhhhccccccccChhHHHHHHHHHHhhheeEecCCCC-------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 021318 127 MGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-------SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPET 199 (314)
Q Consensus 127 ~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~-------~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~ 199 (314)
++.++ +|||.++++++++++..+|+++....+... +..++..|..+++++.+++|.++++.||..++++
T Consensus 108 l~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-- 183 (295)
T PRK11689 108 FAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-- 183 (295)
T ss_pred HHHHH--hcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC--
Confidence 99999 899999999999999999999887554211 0112456999999999999999999999865443
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhchH-----HHHH-----------------H---------HHHhhhhhhhHHHHhhh
Q 021318 200 TQMEMLFCSTVVGLPMLIPPMLLTGEL-----FKAW-----------------N---------SCSQVTTARKAVTLLLS 248 (314)
Q Consensus 200 ~~~~~~~y~~~~s~~~~~~~~~~~g~l-----~~~~-----------------~---------~~s~v~~~rki~sills 248 (314)
+....+. ..+..+..+. ..+++. .+.+ + ..+....+.|+++++++
T Consensus 184 -~~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~ 259 (295)
T PRK11689 184 -GITLFFI--LTALALWIKY-FLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALA 259 (295)
T ss_pred -chhHHHH--HHHHHHHHHH-HHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHH
Confidence 2332221 1111111111 111110 0000 0 11237789999999999
Q ss_pred hhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 249 YLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 249 ~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
++++||++++.+++|.++++.|+.+.....
T Consensus 260 ~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 260 ALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 999999999999999999999998876544
No 21
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.57 E-value=7.8e-15 Score=130.93 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=119.2
Q ss_pred CchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC-----------------------C
Q 021318 108 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----------------------S 164 (314)
Q Consensus 108 vs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~-----------------------~ 164 (314)
+++|.++.+|+.+++++|+.+..+ .+||++..|+++..+++.|+.....+|.+. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 689999999999999999999999 799999999999999999988644433210 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHH-----Hh-hchHH-----------
Q 021318 165 PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-----LL-TGELF----------- 227 (314)
Q Consensus 165 ~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~-----~~-~g~l~----------- 227 (314)
....+.|..+++.+++++++.++++|+.+++++. ++|.+.++++++.+.. .. .++..
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT------MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC------chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 1345789999999999999999999998775431 2444444443333221 11 11100
Q ss_pred HHH----H------------------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHH
Q 021318 228 KAW----N------------------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 228 ~~~----~------------------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly 274 (314)
..+ + .++.++++||+++.++|+++|||+++..+++|..+++.|+++|
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 001 0 1123789999999999999999999999999999999998876
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.54 E-value=5.3e-12 Score=117.37 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=158.4
Q ss_pred ecCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH--hcccccCCCCchhHHHHHHH
Q 021318 15 SLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL--QGFTTKQMMNPWKTYVKLSA 92 (314)
Q Consensus 15 ~~~~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~--~~~~~~~~~~~~~~y~~~s~ 92 (314)
+++++|++.-...+..+.. ++...+...+.... .++ |..+.+..++..++.... +..+.+.++..++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~la~~-~~~~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 4 SLRKLPVWLPILLLLIAMA-SIQSGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV 79 (293)
T ss_pred cccccccchHHHHHHHHHH-HHHhhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH
Confidence 3456666555444444332 33344445555553 244 566788887776543322 11111112223444555666
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHH
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGV 172 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~ 172 (314)
+......+.++|++|+|.+...+.-.+.|+++++++ +||.+.. ..+.+..+|+.+....+.+. .+.+..|.
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~~--~~~~i~~~Gv~li~~~~~~~-~~~~~~G~ 150 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVDF--VWVVLAVLGLWFLLPLGQDV-SHVDLTGA 150 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHHH--HHHHHHHHHHheeeecCCCc-ccCChHHH
Confidence 667777888999999999999898899999998765 2444433 44566788988765332211 23356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc-------hHHH-HH--------------
Q 021318 173 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-------ELFK-AW-------------- 230 (314)
Q Consensus 173 ~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g-------~l~~-~~-------------- 230 (314)
.+.+++.+++|.+.++.+|..++++ +.... +...++.....+.....+ +.+. .+
T Consensus 151 ll~l~aa~~~a~~~v~~r~~~~~~~---~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 151 ALALGAGACWAIYILSGQRAGAEHG---PATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC---chHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998866543 33333 333444433333322221 1010 00
Q ss_pred H---------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 021318 231 N---------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 280 (314)
Q Consensus 231 ~---------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~ 280 (314)
+ ..+.+..+.|++++++|++++||++++.+++|.+++++|++.+.+..++
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0 1123788999999999999999999999999999999999999866533
No 23
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.51 E-value=3.2e-12 Score=119.03 Aligned_cols=227 Identities=8% Similarity=0.086 Sum_probs=146.5
Q ss_pred HHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--H--Hhcc-cccCC-CCchhHH--HHH-HHHHHHHHHHHHHHhh
Q 021318 36 YLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--Y--LQGF-TTKQM-MNPWKTY--VKL-SAVLMGSHGLTKGSLA 106 (314)
Q Consensus 36 ~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~--~--~~~~-~~~~~-~~~~~~y--~~~-s~~~~~~~~~~n~aL~ 106 (314)
+...+..-+.+ .+.+ |..+++.+++++.... . .++. +..++ ..+++.. ... ++.......+.++|++
T Consensus 20 wg~~~~~~k~~---~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 95 (296)
T PRK15430 20 WGIAPAYFKLI---YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVN 95 (296)
T ss_pred HHHHHHHHHHh---cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444443 2344 7788888877754322 1 1111 11000 1122322 223 3446678889999999
Q ss_pred CCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 021318 107 FLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLG 186 (314)
Q Consensus 107 yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~ 186 (314)
++|.+...++..+.|++++++++++ +|||.++++++++++..+|+.+....++ +.. .+.+++.+++|++.
T Consensus 96 ~~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~----~~~l~aa~~~a~~~ 165 (296)
T PRK15430 96 NHHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP----IIALGLAFSFAFYG 165 (296)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc----HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8999999999999999999998653321 111 45777889999999
Q ss_pred HHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHH-----hhc-hH-HHH---------------H---------HHHHh
Q 021318 187 NLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML-----LTG-EL-FKA---------------W---------NSCSQ 235 (314)
Q Consensus 187 v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~-----~~g-~l-~~~---------------~---------~~~s~ 235 (314)
++++|..++. ..+......+..+++.+...+... ... .. ... + +..+.
T Consensus 166 i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~ 244 (296)
T PRK15430 166 LVRKKIAVEA-QTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGF 244 (296)
T ss_pred HHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 9988864321 112222233433333333211100 000 00 000 0 01123
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
...+.|++++++|++++||++++.+++|.++++.|+.+....
T Consensus 245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999998888777654
No 24
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.48 E-value=1.2e-11 Score=114.15 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHH
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMI 170 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~ 170 (314)
+........+.+.|+++.+.+....+-.+.|++++++++++ +|||.+.++++++.++..|+.+....+.. +.+..
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---~~~~~ 144 (281)
T TIGR03340 70 AVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA---QHRRK 144 (281)
T ss_pred HHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc---ccchh
Confidence 34467778889999999999999999999999999999999 89999999999999999999877654321 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-cChHHHHHHHHHH-HHHHHHHHHHhhc--------hHHH-HH-H-HH----
Q 021318 171 GVIMISGALIMDSFLGNLQEAIFTMNPE-TTQMEMLFCSTVV-GLPMLIPPMLLTG--------ELFK-AW-N-SC---- 233 (314)
Q Consensus 171 G~~l~l~s~~~~al~~v~q~~l~~~~~~-~~~~~~~~y~~~~-s~~~~~~~~~~~g--------~l~~-~~-~-~~---- 233 (314)
|..+.+++.++++.+++..|+..++.++ .+......+.... +.|+..+.....+ ..+. .+ . .+
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999987775433221 1111122222222 1333222111011 0000 00 0 00
Q ss_pred ----------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHH
Q 021318 234 ----------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 273 (314)
Q Consensus 234 ----------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~l 273 (314)
+....+.+++++++|++++||+++..+++|.++++.|+.+
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 0145678999999999999999999999999999999875
No 25
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.44 E-value=1.8e-11 Score=110.08 Aligned_cols=189 Identities=17% Similarity=0.192 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCC-
Q 021318 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS- 164 (314)
Q Consensus 86 ~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~- 164 (314)
-+++++++...+..+.|.+|.+.+.+.+||.|-+-.|||.+++.-+ ++++.+.+||++++.+.+|+++....|.-..
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~ 165 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLDVHLVT 165 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence 3567899999999999999999999999999999999999999999 9999999999999999999999888754211
Q ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHH-----Hhhc---------h
Q 021318 165 -----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-----LLTG---------E 225 (314)
Q Consensus 165 -----~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~-----~~~g---------~ 225 (314)
-+.-..|..+++++.+.-|+.-+++||.+++++ .+|.+..-|..++++.++.... ...+ .
T Consensus 166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~ 244 (372)
T KOG3912|consen 166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV 244 (372)
T ss_pred CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence 133478999999999999999999999998875 4677777776666644332211 1111 1
Q ss_pred H---HHHH-----------------------HHH--------H-----hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHH
Q 021318 226 L---FKAW-----------------------NSC--------S-----QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL 266 (314)
Q Consensus 226 l---~~~~-----------------------~~~--------s-----~v~~~rki~sills~~~fg~~~t~~~~iG~~l 266 (314)
+ .+++ |+. | ..-.+|..+..++++..++|.+...|+.|.++
T Consensus 245 ~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFli 324 (372)
T KOG3912|consen 245 LEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLI 324 (372)
T ss_pred hhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 111 1 15578999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 021318 267 IAMGITLKLLP 277 (314)
Q Consensus 267 v~~Gv~ly~~~ 277 (314)
.+.|+++|+-.
T Consensus 325 Li~Gi~lY~~i 335 (372)
T KOG3912|consen 325 LIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.41 E-value=3.8e-10 Score=102.97 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhh-hccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchH
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGA-FIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSM 169 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~-l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~ 169 (314)
.+.......+.+.+++|++.+..++..++.|+++.+++. ++ +|||.++++++++++...|+++....+.....+ ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-~~ 153 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGGGGIL-SL 153 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCcchhH-HH
Confidence 445777788899999999999999999999999999996 66 699999999999999999999998776532211 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHH-HHHHHHHHHHHHHHHhh----chHHHH---------------
Q 021318 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPPMLLT----GELFKA--------------- 229 (314)
Q Consensus 170 ~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~-y~~~~s~~~~~~~~~~~----g~l~~~--------------- 229 (314)
.|..+.+++.+++|++.+.+++.. +.+ +....+ +..........+..... ......
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS-RLG---PVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCC---hHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887 322 233333 22221111111111110 011000
Q ss_pred --HH---------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 230 --WN---------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 230 --~~---------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
+. ..+....+.++.+++++++++||+++..+++|.++++.|+.+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 00 0011447889999999999999999999999999999999998877
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.28 E-value=2.3e-10 Score=106.77 Aligned_cols=188 Identities=15% Similarity=0.296 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCC----CC
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS----PN 166 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~----~~ 166 (314)
+.+.++.+.+.|.||+|.+++..++.-|++-.|+..++.++ ..+|+++.|.+++.+.+.||++.+.+|.++. ++
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 44567888899999999999999999999999999999999 6899999999999999999999999977432 34
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CcChHHHHH-HHHHHHHHHHHHHHHhh---c-hHHH------------
Q 021318 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNP-ETTQMEMLF-CSTVVGLPMLIPPMLLT---G-ELFK------------ 228 (314)
Q Consensus 167 ~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~-~~~~~~~~~-y~~~~s~~~~~~~~~~~---g-~l~~------------ 228 (314)
....|.+++++|++.+|+|.++-+|-..+++ +.+ +++.| |..++.+.++.|.+++- + |.+.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 5689999999999999999999998777774 554 44443 56777777776654321 1 1000
Q ss_pred -----------HHH----HHHh-----hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 021318 229 -----------AWN----SCSQ-----VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 281 (314)
Q Consensus 229 -----------~~~----~~s~-----v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 281 (314)
.|. .|+. -.++..-.+++..+++=|++.|+.+++|.+.+++|-+.-++.....
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 111 1111 2234445677778888899999999999999999999988875443
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.21 E-value=8e-13 Score=117.33 Aligned_cols=241 Identities=14% Similarity=0.196 Sum_probs=166.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHH-HHHhcccccCCCCchhHHHHHHHHHHHHH
Q 021318 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVL-IYLQGFTTKQMMNPWKTYVKLSAVLMGSH 98 (314)
Q Consensus 20 ~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~-~~~~~~~~~~~~~~~~~y~~~s~~~~~~~ 98 (314)
.|.+.+++|..+...+++ .+.+.+.|.+=||+....-++. --...+|.+.-...|++|..+++...-++
T Consensus 23 GQiLSL~~t~~a~tss~l----------a~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaN 92 (336)
T KOG2766|consen 23 GQILSLLITSTAFTSSEL----------ARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEAN 92 (336)
T ss_pred HHHHHHHHHcchhhhHHH----------HhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeeccc
Confidence 356666666666655443 2233456766665443221111 11123443333457889999999888888
Q ss_pred HHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCC----CCCchHHHHHH
Q 021318 99 GLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT----SPNFSMIGVIM 174 (314)
Q Consensus 99 ~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~----~~~~~~~G~~l 174 (314)
.+-..|.+|.|....++.-+-..+.++++++++ +|.||.+.|+.++.+..+||.+...+|... .+++...|..+
T Consensus 93 y~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~l 170 (336)
T KOG2766|consen 93 YFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFL 170 (336)
T ss_pred EEEeeehhhcchHHHHHHHHhhhHHHHHHHHHH--HHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEE
Confidence 888899999999888888888899999999999 999999999999999999999998877532 24556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc----------hHHHH--HH---HH--H---
Q 021318 175 ISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG----------ELFKA--WN---SC--S--- 234 (314)
Q Consensus 175 ~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g----------~l~~~--~~---~~--s--- 234 (314)
++..+-++|+.++.+|.+.++-+ ..|++-...+++.+....=...+. +.... .. +| +
T Consensus 171 vi~GATlYaVSNv~EEflvkn~d---~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~p 247 (336)
T KOG2766|consen 171 VIAGATLYAVSNVSEEFLVKNAD---RVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAP 247 (336)
T ss_pred EEecceeeeeccccHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999887643 466666555555544433211111 11000 01 11 0
Q ss_pred -------h----h-hhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 235 -------Q----V-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 235 -------~----v-~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
+ . ..+..+.++++ ..||-+++|...+..+.+..|.++|+..
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 0 1 23445666666 7788889999999999999999999544
No 29
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.19 E-value=2.3e-10 Score=95.60 Aligned_cols=106 Identities=18% Similarity=0.341 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC----CCcChHHHHHHHHHHHHHHHHHHHHhhchHH---------------H--H
Q 021318 171 GVIMISGALIMDSFLGNLQEAIFTMN----PETTQMEMLFCSTVVGLPMLIPPMLLTGELF---------------K--A 229 (314)
Q Consensus 171 G~~l~l~s~~~~al~~v~q~~l~~~~----~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~---------------~--~ 229 (314)
|+++++.|.++.|++++++|+.+++. .+.+++++++|+++.+.+.++|..+..++.. . .
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78999999999999999999999884 4568899999999999988888643222110 0 0
Q ss_pred H-------------HHH-------------HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhc
Q 021318 230 W-------------NSC-------------SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 276 (314)
Q Consensus 230 ~-------------~~~-------------s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~ 276 (314)
+ |.+ +.++++|+++++++|+++|||++|+.+++|++++++|+.+|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 0 111 1278999999999999999999999999999999999999986
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.05 E-value=1.1e-07 Score=88.33 Aligned_cols=179 Identities=12% Similarity=0.154 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhh-cchHhHhhhhhhccccccccChhH----HHHHHHHHHhhheeEecCCCCCC-
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHE----YVSALLLVVGLILFTLADAQTSP- 165 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks-~~pi~v~l~~~l~~gl~~r~s~~~----~lsl~li~~Gv~l~~~~~~~~~~- 165 (314)
+....++.+...|.++++++....+-+ ..++.+++.+.++ +||+.+.++ +++++++++|+++....+.++..
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~ 144 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI 144 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence 346777789999999999988877777 6678889999999 899999999 99999999999998776533211
Q ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHH---HHHHH-HHHHHHHHH-------------HHhhch
Q 021318 166 ---NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEML---FCSTV-VGLPMLIPP-------------MLLTGE 225 (314)
Q Consensus 166 ---~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~---~y~~~-~s~~~~~~~-------------~~~~g~ 225 (314)
.....|+.+.++|.++.+.+.+.-|+. +++ +.+.. ++.-+ -+..++.+. ....|-
T Consensus 145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 219 (290)
T TIGR00776 145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD---GLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGL 219 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC---cceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 223679999999999999999988865 233 33332 11111 111111111 001111
Q ss_pred HHHHHH---------------HHHhhhhhhhHHHHhhhhhhcCCCcchhhh----hhHHHHHHHHHHHhccC
Q 021318 226 LFKAWN---------------SCSQVTTARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPA 278 (314)
Q Consensus 226 l~~~~~---------------~~s~v~~~rki~sills~~~fg~~~t~~~~----iG~~lv~~Gv~ly~~~k 278 (314)
.+ ... ..+......++++.+.|++++||+.++.|+ +|.++++.|+.+-...|
T Consensus 220 ~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 220 MW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 11 111 112267888999999999999999999999 99999999998866543
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.74 E-value=9.5e-06 Score=72.65 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHHH--HHHhcccccCCCCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhcc
Q 021318 55 GWYFTFIQGFVYLVL--IYLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIP 132 (314)
Q Consensus 55 ~~~lt~~q~~~~~~~--~~~~~~~~~~~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~ 132 (314)
+.-.|..-....++. ...+.+|.+-.+.+|+..+.-+.....++.+-|.|++.+|..+.+.+..+.|+.+.+++.
T Consensus 40 ~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s--- 116 (292)
T COG5006 40 AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS--- 116 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc---
Confidence 344455553333322 122333332233345556666778888999999999999999999999999998877652
Q ss_pred ccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHH
Q 021318 133 GLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVG 212 (314)
Q Consensus 133 gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s 212 (314)
|| .++.+.+.+.+.|+.+..-...+ ..+-+..|..+.+.+..||+.|-+..+|.-+..+.. .-+-+...++
T Consensus 117 ---Rr--~~d~vwvaLAvlGi~lL~p~~~~-~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~---~g~a~gm~vA 187 (292)
T COG5006 117 ---RR--LRDFVWVALAVLGIWLLLPLGQS-VWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGT---AGVAVGMLVA 187 (292)
T ss_pred ---cc--hhhHHHHHHHHHHHHhheeccCC-cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCc---hHHHHHHHHH
Confidence 33 34555566667776655433211 134578999999999999999999999987432211 1122222233
Q ss_pred HHHHHHHHHh-hch-HHH------HH--H---------------------HHHhhhhhhhHHHHhhhhhhcCCCcchhhh
Q 021318 213 LPMLIPPMLL-TGE-LFK------AW--N---------------------SCSQVTTARKAVTLLLSYLIFTKPLTEQHG 261 (314)
Q Consensus 213 ~~~~~~~~~~-~g~-l~~------~~--~---------------------~~s~v~~~rki~sills~~~fg~~~t~~~~ 261 (314)
....+|+-.. .+. +++ ++ . .++....+.|.+.-+.++++.||.+|+.||
T Consensus 188 aviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qw 267 (292)
T COG5006 188 ALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQW 267 (292)
T ss_pred HHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHH
Confidence 3333332111 111 100 00 1 123367889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCC
Q 021318 262 TGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 262 iG~~lv~~Gv~ly~~~k~~~k 282 (314)
.|+.+++.+..--++.-+|+.
T Consensus 268 laI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 268 LAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHHhccccccCCCC
Confidence 999999999887777655543
No 32
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.67 E-value=2e-06 Score=78.24 Aligned_cols=145 Identities=6% Similarity=-0.035 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH--HH--hccc----ccCC---CCchh-HHHHHHHHHHHHHHHHHH
Q 021318 36 YLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--YL--QGFT----TKQM---MNPWK-TYVKLSAVLMGSHGLTKG 103 (314)
Q Consensus 36 ~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~--~~--~~~~----~~~~---~~~~~-~y~~~s~~~~~~~~~~n~ 103 (314)
+...+...+.+. +. .|..+++..++.+.... +. .+.+ ++.+ +.+++ .....+++......+.++
T Consensus 14 wg~~~~~~k~~~---~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (256)
T TIGR00688 14 FGYMYYYSKLLK---PL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIW 89 (256)
T ss_pred HHHHHHHHHHhc---cC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555431 23 36778888877654332 11 2211 0001 11111 233345557778889999
Q ss_pred HhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHH
Q 021318 104 SLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDS 183 (314)
Q Consensus 104 aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~a 183 (314)
|++|++.+...++-.+.|+++++++.++ +|||.++++++++++..+|+++....++ +.. .+.+++.+++|
T Consensus 90 a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~~~----~~~l~aa~~~a 159 (256)
T TIGR00688 90 AVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----SLP----WEALVLAFSFT 159 (256)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----Cch----HHHHHHHHHHH
Confidence 9999999999999999999999999999 8999999999999999999987654321 111 35678899999
Q ss_pred HHHHHHHHHHh
Q 021318 184 FLGNLQEAIFT 194 (314)
Q Consensus 184 l~~v~q~~l~~ 194 (314)
.+.+..||..+
T Consensus 160 ~~~i~~~~~~~ 170 (256)
T TIGR00688 160 AYGLIRKALKN 170 (256)
T ss_pred HHHHHHhhcCC
Confidence 99999998654
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.66 E-value=2e-06 Score=78.44 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHH
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIG 171 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G 171 (314)
++...+.+.-.+|-+.=..--..+.....|++.+++|.++ +|||.++.||+++.+..+||..-....+ +.++..
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpwva 153 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPWVA 153 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcHHH
Confidence 3333333344444444112222333445699999999999 9999999999999999999997665442 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHH---hhchHHH-----------------HH-
Q 021318 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML---LTGELFK-----------------AW- 230 (314)
Q Consensus 172 ~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~---~~g~l~~-----------------~~- 230 (314)
..++ +..++|+...|++.- +..+-..--.++-.|..+..++ .++++.. +.
T Consensus 154 l~la----~sf~~Ygl~RK~~~v-----~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavp 224 (293)
T COG2962 154 LALA----LSFGLYGLLRKKLKV-----DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVP 224 (293)
T ss_pred HHHH----HHHHHHHHHHHhcCC-----chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHH
Confidence 5554 455778877776522 2222222222222222221111 1111000 00
Q ss_pred -------------HHHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCC
Q 021318 231 -------------NSCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 231 -------------~~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
+..+...-+.|....++++++||||++..+.+..+++-.|+.+|+...-+++
T Consensus 225 L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 225 LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112255678999999999999999999999999999999999998765433
No 34
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.63 E-value=5.8e-08 Score=87.24 Aligned_cols=183 Identities=11% Similarity=0.157 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec-----CCCC--
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA-----DAQT-- 163 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~-----~~~~-- 163 (314)
+++-+.+..+.++|++|.|.+=.+++..++|+++.++++++ +||+++..+.+..++...||++..-. |...
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE 181 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence 55555677889999999999999999999999999999999 99999999999999999999997642 2211
Q ss_pred -C--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchH--HH----------
Q 021318 164 -S--PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGEL--FK---------- 228 (314)
Q Consensus 164 -~--~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l--~~---------- 228 (314)
+ .+.+..|-...+.+.+.-|-..+.-+++.|+-+. .+.+.+| ..+++...+.....-|++ .+
T Consensus 182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~--~msvsyf-~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~ 258 (346)
T KOG4510|consen 182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA--IMSVSYF-SLITLVVSLIGCASIGAVQLPHCGKDRWLFVN 258 (346)
T ss_pred ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE--EEEehHH-HHHHHHHHHHHHhhccceecCccccceEEEEE
Confidence 1 1345678888888887777666667776554331 1222333 334444433322111111 00
Q ss_pred --HHHHHH--------h---------hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 229 --AWNSCS--------Q---------VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 229 --~~~~~s--------~---------v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
...+.. | .+.+.-+++..--+++|||-.|++.|+|+++++....+-...|
T Consensus 259 lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 259 LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 001111 1 3445567888889999999999999999999999988876654
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.39 E-value=1.3e-06 Score=69.55 Aligned_cols=116 Identities=13% Similarity=0.214 Sum_probs=84.8
Q ss_pred HHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHH-H--Hhcccc--cCCCCchhHHHHHHHH-HHHHHHHHHHHhhCCc
Q 021318 36 YLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI-Y--LQGFTT--KQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLN 109 (314)
Q Consensus 36 ~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~-~--~~~~~~--~~~~~~~~~y~~~s~~-~~~~~~~~n~aL~yvs 109 (314)
+..+.+++++..++ .+ |...++.++....... . ....++ ..+...+......+.+ ...+..+.+.++++++
T Consensus 3 ~a~~~~~~k~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 3 WAIYSVFSKKLLKK--IS-PLSITFWRFLIAGILLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeHHHHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 34566777777644 44 6677777877655311 1 112111 1112223344455555 5788889999999999
Q ss_pred hhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhee
Q 021318 110 YPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 156 (314)
Q Consensus 110 ~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~ 156 (314)
.+...++..+.|++++++++++ +||+.+++++++++++++|+++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~--~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLF--LGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 89999999999999999998865
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.32 E-value=1.7e-06 Score=69.05 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=66.0
Q ss_pred CchhHHHHHHHHH-HHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 82 NPWKTYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 82 ~~~~~y~~~s~~~-~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
.++......+++. ..+..+.++|++|.+ +...+..++.|+++++++.++ +|||.+.+++++++++++|+++...+|
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444445554 377889999999999 677799999999999999999 999999999999999999999998887
Q ss_pred CC
Q 021318 161 AQ 162 (314)
Q Consensus 161 ~~ 162 (314)
.+
T Consensus 109 ~~ 110 (113)
T PF13536_consen 109 LT 110 (113)
T ss_pred cc
Confidence 54
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.74 E-value=0.00088 Score=55.58 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
..+++....+..++..++++|.-++.+....|.+.+.+++.++ ++|+.+..+++++.+.++|+.+.++
T Consensus 86 ~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 86 LSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3456677888899999999999999999999999999999999 8999999999999999999988653
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.68 E-value=0.00018 Score=62.38 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCCCCCCc
Q 021318 88 VKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNF 167 (314)
Q Consensus 88 ~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~ 167 (314)
.|.+++..+.++.-..||+.+|.+-...+-+|.-.+|-+++++. +++|+..-+++++++.+.|+++..+.|... ..
T Consensus 57 aPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~--a~ 132 (290)
T KOG4314|consen 57 APFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH--AD 132 (290)
T ss_pred cceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--hh
Confidence 44566677888888899999999999999999999999999999 899999999999999999999999988643 35
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021318 168 SMIGVIMISGALIMDSFLGNLQEAIFTM 195 (314)
Q Consensus 168 ~~~G~~l~l~s~~~~al~~v~q~~l~~~ 195 (314)
++.|+.++..|+++.|+|-++.|+...+
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999887653
No 39
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.67 E-value=0.00042 Score=66.42 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH---hcccc-cCC---CCchh--HHHHHHHHHHHHHHHHHHH
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL---QGFTT-KQM---MNPWK--TYVKLSAVLMGSHGLTKGS 104 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~---~~~~~-~~~---~~~~~--~y~~~s~~~~~~~~~~n~a 104 (314)
.++..|.++|++... +++.+..+++.|+++..+.... ...+. .+. ..+.. ..+..++...+...+.|++
T Consensus 199 ~~wa~~~il~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~ 276 (358)
T PLN00411 199 IFVSVSFILQAHIMS--EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWT 276 (358)
T ss_pred HHHHHHHHHHHHHHH--HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888763 3444556677776665433211 11110 000 01111 1111223334566678999
Q ss_pred hhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 105 LAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 105 L~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
+++++.+...++-...|++.+++++++ ++|+.++.++++.++++.|+.+...++
T Consensus 277 v~~~ga~~as~~~~L~PV~a~llg~l~--LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 277 VRHKGPLYLAIFKPLSILIAVVMGAIF--LNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HhccCchHHHHHHhHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 899999999999999999999877543
No 40
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.66 E-value=0.0011 Score=59.77 Aligned_cols=118 Identities=12% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH--hcccccCCC--CchhHHHHHHHH-HHHHHHHHHHHhhCC
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL--QGFTTKQMM--NPWKTYVKLSAV-LMGSHGLTKGSLAFL 108 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~--~~~~~~~~~--~~~~~y~~~s~~-~~~~~~~~n~aL~yv 108 (314)
.++..+.+++++..++.+ +.+..++..++.+....... ....+.+.. ..|...+..+++ ...+..+.+.+++++
T Consensus 138 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 216 (260)
T TIGR00950 138 ISFALGTVLYKRLVKKEG-PELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLV 216 (260)
T ss_pred HHHHHHHHHHhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556677777753322 11334444555554433321 111111111 112222334444 456777899999999
Q ss_pred chhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhh
Q 021318 109 NYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLI 154 (314)
Q Consensus 109 s~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~ 154 (314)
+.+...++..+.|++.+++++++ ++|+.+..+++++.+++.|+.
T Consensus 217 ~~~~~s~~~~~~pv~~~ll~~~~--~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 217 DPSAASILALAEPLVALLLGLLI--LGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 899999999999999999963
No 41
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.51 E-value=0.00032 Score=55.95 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeE
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 157 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~ 157 (314)
..+..+..+-..+++.+|.+.....-+..++.+++.++++ +|||.++++++++.++++|+++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3477788899999999999998888899999999999999 899999999999999999998754
No 42
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.34 E-value=0.0075 Score=49.37 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHH-HHHHHHHHHH--HHHHHHHhhchHHHHH---------HHHHhhh
Q 021318 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEM-LFCSTVVGLP--MLIPPMLLTGELFKAW---------NSCSQVT 237 (314)
Q Consensus 170 ~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~-~~y~~~~s~~--~~~~~~~~~g~l~~~~---------~~~s~v~ 237 (314)
.|+.+++++.++.+...+.-|+=.++.+..+.... .........| .........+--.-.| +.+..+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 48899999999988877777766555442211110 0000000111 1111111111000111 1112233
Q ss_pred hhhhHHHHhhhhh--hcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 238 TARKAVTLLLSYL--IFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 238 ~~rki~sills~~--~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
..-.....+.++. +|||++|+.+++|++++++|+++-+..++
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 3334555556664 89999999999999999999999776443
No 43
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.32 E-value=0.0044 Score=57.49 Aligned_cols=120 Identities=9% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-hcc--cccCCCCc---hhHHHHHHHH-HHHHHHHHHHHhh
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-QGF--TTKQMMNP---WKTYVKLSAV-LMGSHGLTKGSLA 106 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~-~~~--~~~~~~~~---~~~y~~~s~~-~~~~~~~~n~aL~ 106 (314)
.+|..+.+.+++..+ +.+...+..|+.+....... ... .......+ |......++. ......+.+.+++
T Consensus 160 ~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~ 235 (292)
T PRK11272 160 ASWAFGSVWSSRLPL----PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235 (292)
T ss_pred HHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666777777632 12345566777665433221 111 11111112 2233334443 4566778999999
Q ss_pred CCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 107 FLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 107 yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
+++.+...+.....|++.+++++++ ++|+.+..++++..+++.|+.+....
T Consensus 236 ~~~~~~~s~~~~l~Pi~a~i~~~~~--l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 236 NVRPALATSYAYVNPVVAVLLGTGL--GGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999999999876544
No 44
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.27 E-value=0.0013 Score=51.94 Aligned_cols=91 Identities=13% Similarity=0.222 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc--h--------HHHH--------------H------
Q 021318 181 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG--E--------LFKA--------------W------ 230 (314)
Q Consensus 181 ~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g--~--------l~~~--------------~------ 230 (314)
++|.+++..|+..++. ++....++....+.+ .++.....+ + .... +
T Consensus 2 ~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred eeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence 4677778888877753 467777777766665 333221111 1 0000 0
Q ss_pred ---HHHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHh
Q 021318 231 ---NSCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 275 (314)
Q Consensus 231 ---~~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~ 275 (314)
+..+.+..+.++++.++++++++|++++.+++|++++++|+.+.+
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 011236788999999999999999999999999999999998754
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.19 E-value=0.0027 Score=59.08 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHHHHH-----hcccccC----C----CCchhHHH---HHHH-HHHH
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-----QGFTTKQ----M----MNPWKTYV---KLSA-VLMG 96 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~~~~-----~~~~~~~----~----~~~~~~y~---~~s~-~~~~ 96 (314)
.++..+.++.++..++++.+ +..++..|+..+++.... .+..... . ......+. ..+. .+..
T Consensus 155 ~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (302)
T TIGR00817 155 ITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF 233 (302)
T ss_pred HHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 45566777888876532333 566777776555432211 1111000 0 00101111 1122 2333
Q ss_pred HHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 97 SHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 97 ~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
.+.+.+.++++++..+..+.-..+|++++++++++ ++|+.+..++++..+++.|+.+....+
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~--lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF--FGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh--cCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 33566689999999999999999999999999999 899999999999999999999876544
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.15 E-value=0.0067 Score=56.78 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCC
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 161 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~ 161 (314)
.+..+..++..|+.+.|.+..+=+-+...++.++++..+ +|||.++++++++.+++.|+.+......
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~ 125 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAP 125 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCC
Confidence 366777899999999999999988999999999999999 8999999999999999999887665443
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.08 E-value=0.06 Score=49.46 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHH-hhcchHhHhhhhhhccccccccChhHH----HHHHHHHHhhheeEecCCCCC
Q 021318 90 LSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQTS 164 (314)
Q Consensus 90 ~s~~~~~~~~~~n~aL~yvs~~~~~i~-ks~~pi~v~l~~~l~~gl~~r~s~~~~----lsl~li~~Gv~l~~~~~~~~~ 164 (314)
-+++...+...+..|++++.+|...=+ -..-.+-+.+++.++ |+|--+..++ ++++++++|+.+.+..|.+++
T Consensus 51 sG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 51 SGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 356677888888999988554322111 112256678899998 7897777775 588999999999998876543
Q ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHH----HHHHHHHH--HHH---------Hhhch
Q 021318 165 ----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCST----VVGLPMLI--PPM---------LLTGE 225 (314)
Q Consensus 165 ----~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~----~~s~~~~~--~~~---------~~~g~ 225 (314)
.+....|+..++++.+.+..|.+..+- .+ .++++..+-.. +-++.+.. .-. ...|-
T Consensus 129 ~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~ 203 (269)
T PF06800_consen 129 KSSSKSNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGL 203 (269)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHH
Confidence 123467999999999999888888654 22 23344333211 11111111 000 01111
Q ss_pred HHHHHHHH---H----------hhhhhhhHHHHhhhhhhcCCCcchh----hhhhHHHHHHHHHH
Q 021318 226 LFKAWNSC---S----------QVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITL 273 (314)
Q Consensus 226 l~~~~~~~---s----------~v~~~rki~sills~~~fg~~~t~~----~~iG~~lv~~Gv~l 273 (314)
.|..-|.+ + ...-+..+++.+-|++++||+=+.. .++|.++++.|..+
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 12111222 1 1456678899999999999987754 55688888777653
No 48
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.02 E-value=0.018 Score=45.83 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHh
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 275 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~ 275 (314)
...+..+.+.++|+++|||++|+.+++|++++++|+.+-.
T Consensus 69 ~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 69 MLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3447888999999999999999999999999999987643
No 49
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.01 E-value=0.017 Score=53.55 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred HHHH-HHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 90 LSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 90 ~s~~-~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
++++ ..++..+.|.++++++.+...++-...|++..++++++ ++|+.+..++++..+++.|++.....
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 4443 55667788999999999999999999999999999999 89999999999999999998876543
No 50
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.00 E-value=0.014 Score=47.39 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=57.9
Q ss_pred hHHHHHH-HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 85 KTYVKLS-AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 85 ~~y~~~s-~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
+-|+.+| +....+..+-+.|++-=..|--.=+-.++|+++.++++++ +|||.+.++|+++.++++|+++.+.
T Consensus 67 ~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lf--L~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 67 WLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILF--LGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhCeeeEec
Confidence 3455554 4467778888999988555555555678899999999999 9999999999999999999988753
No 51
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.97 E-value=0.0038 Score=50.56 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchHHH---------------HH----H-
Q 021318 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFK---------------AW----N- 231 (314)
Q Consensus 172 ~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l~~---------------~~----~- 231 (314)
.+++++|+++.|+..++.|--.++.+ |.-..+--++....+.....+..|+... +. +
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd---p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD---PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC---ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 46888999999999888886555332 3222333333333333333333332110 00 0
Q ss_pred ---H-------HHh---hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHh
Q 021318 232 ---S-------CSQ---VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 275 (314)
Q Consensus 232 ---~-------~s~---v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~ 275 (314)
+ .++ +.-+.+++++++|++++||++|..+|+|..++.+|+.+-+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 0 011 5667789999999999999999999999999999987654
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.94 E-value=0.015 Score=53.98 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
++....+..+.+.++++++.+...++-...|++.+++++++ ++|+.+..++++..+++.|+.+....
T Consensus 222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~--lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALL--LSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 33455567788999999999999999999999999999999 89999999999999999999877543
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.93 E-value=0.0037 Score=50.46 Aligned_cols=72 Identities=8% Similarity=0.173 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHH-HHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 87 YVKLSAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 87 y~~~s~~~~~~~~~~n~aL~yvs~~~~-~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
....-+++..+..+-..+++++|.+.. .+......+.+.+.+.++ ++|+.++.+++++.++++|++.....+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 444555688888899999999998774 444567889999999999 899999999999999999999876654
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.84 E-value=0.017 Score=53.65 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 94 ~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
......+.+.++++++.....+.-...|++.+++++++ ++|+.+..++++..++++|+.+...+.
T Consensus 225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~--lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALL--LDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 44566678889999998888888999999999999999 899999999999999999998776544
No 55
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.79 E-value=0.0069 Score=49.58 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred HHHHH-HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhh--ccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 88 VKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 88 ~~~s~-~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l--~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
...++ ++.++..+-+.+++.++.+...-+-+..++.+++.++. + ++|+.++.+++++.++++|+.+...++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 44444 47888889999999999888777777777778877774 6 799999999999999999999877544
No 56
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.79 E-value=0.023 Score=51.40 Aligned_cols=101 Identities=11% Similarity=0.163 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc-------------h--HHHHH---H
Q 021318 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-------------E--LFKAW---N 231 (314)
Q Consensus 170 ~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g-------------~--l~~~~---~ 231 (314)
.|..+++++.+++|...+..|.+ .+ .++.++.++-.+++.+.+++.....+ . .+... .
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 38899999999999999998863 32 46788999888877766554321111 0 00000 0
Q ss_pred --------------------HHHhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHH
Q 021318 232 --------------------SCSQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 232 --------------------~~s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly 274 (314)
..+.+..+.|+++.+++.++++|+++..+|+|..+.++|+.+-
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0012566789999999999999999999999999999998754
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.70 E-value=0.032 Score=53.30 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
+.+.+.+.+++.+++.++..++.+.-..+|+++.++++++ ++|+.+..++++..++++|+.+.+.
T Consensus 284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~--~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII--FQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH--hCCCCchHhHHHHHHHHHHHHHHhh
Confidence 3455566666679999999999999999999999999999 8999999999999999999987653
No 58
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.69 E-value=0.0087 Score=47.20 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhH-HHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 87 YVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 87 y~~~s~~~~~~~~~~n~aL~yvs~~~-~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
.....+++..+..+-..|++.+|.++ |.+.-....+-+.+.++++ ++|+.++.+++++.+++.|++....
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34445567788888899999999876 5555557788999999999 8999999999999999999987643
No 59
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0073 Score=47.48 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhH-HHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 87 YVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 87 y~~~s~~~~~~~~~~n~aL~yvs~~~-~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
....-+.+..+..+-..|++++|.++ |.+.--...+-+.+.++++ |+|+.+..+++++.+++.|++.....
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 44455567778888899999999877 5555666788999999999 89999999999999999999876543
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.58 E-value=0.011 Score=46.85 Aligned_cols=68 Identities=7% Similarity=0.246 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhH-HHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhee
Q 021318 87 YVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 156 (314)
Q Consensus 87 y~~~s~~~~~~~~~~n~aL~yvs~~~-~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~ 156 (314)
.....+.+..+..+-..|++.+|.++ |-+.-....+.+.+.+.++ ++|+.++.+++++.+++.|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence 33445567778888899999999877 5555556788899999999 89999999999999999999864
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.51 E-value=0.024 Score=52.83 Aligned_cols=124 Identities=11% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHH----HHH--hc-ccc-----cCCCCchhHHHHHHHHHHHHHHHH
Q 021318 34 FGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVL----IYL--QG-FTT-----KQMMNPWKTYVKLSAVLMGSHGLT 101 (314)
Q Consensus 34 ~~~~~~~~~qe~i~~~~~f~~~~~lt~~q~~~~~~~----~~~--~~-~~~-----~~~~~~~~~y~~~s~~~~~~~~~~ 101 (314)
.+....+.+||+++++++.+....+-..+ +.+... ... .+ .++ .+....+...+..+++...+..+-
T Consensus 164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n-~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i 242 (303)
T PF08449_consen 164 LLDAFTGVYQEKLFKKYGKSPWELMFYTN-LFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFI 242 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHH-HHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999776554322222223 222211 111 11 110 000112233344455555555566
Q ss_pred HHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 102 KGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 102 n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
+...+..+..+..+...+.-+.+++++.++ +++++++.+|+++.++..|..+....+
T Consensus 243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~--f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 243 FYLIKKFSALTTTIVTTLRKFLSILLSVII--FGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHhcCchhhhhHHHHHHHHHHHHHHHh--cCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 666777888888888889999999999999 789999999999999999998876554
No 62
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.44 E-value=0.1 Score=48.47 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
++.......+-+.++++++.+...+.-...|++..++++++ ++|+.+..++++..+++.|+.+...
T Consensus 220 g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~--l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 220 GIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTF--YGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44455677899999999999999999999999999999999 8999999999999999888776553
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.44 E-value=0.046 Score=50.34 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhch---HHHHH---------HHHH--
Q 021318 169 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGE---LFKAW---------NSCS-- 234 (314)
Q Consensus 169 ~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~---l~~~~---------~~~s-- 234 (314)
..|+++.+.+.+.+|+.-.+.+-+.. .+..|+.-+-.+++.|+.+..+...++ +++.. ..++
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 46999999999999998888876532 346888989889999988776554433 22211 0110
Q ss_pred --------------------hhh-hhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 235 --------------------QVT-TARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 235 --------------------~v~-~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
..| -+.|.+.+++|.++++|+++..||+.+++..+|+....+...
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 033 478999999999999999999999999999999988877643
No 64
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.40 E-value=0.013 Score=46.52 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHhh-cchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks-~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
..-+++..+..+-..+++.+|.+..--.-+ ...+.+.+.++++ ++|+.++.+++++.++++|+++....+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344557777788889999999887655544 5788889999999 899999999999999999999876543
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.37 E-value=0.11 Score=41.88 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred hhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 238 TARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 238 ~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
.+.-+.+.++|+++|||++|+.+++|+.++++|+..-+...
T Consensus 65 GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 65 GIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34566678899999999999999999999999998876544
No 66
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.35 E-value=0.02 Score=52.73 Aligned_cols=61 Identities=16% Similarity=0.377 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
....+..+.+.++++++.+.........|++..++++++ ++|+.+..++++..++++|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~--lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF--LNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHhHHh
Confidence 355667788999999998888888888999999999999 8999999999999999999875
No 67
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.32 E-value=0.13 Score=40.78 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=36.0
Q ss_pred hhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 237 TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 237 ~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
+.+..+.+.++|+++|||++++.+++|+.++++|+..-+...
T Consensus 64 ~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334556678999999999999999999999999999987654
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.59 E-value=0.19 Score=47.81 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCC
Q 021318 100 LTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 162 (314)
Q Consensus 100 ~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~ 162 (314)
+....+++.|.....+--.++.+..++++.++ +++++++.-+++..++++|+++....+.+
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~--f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFF--FGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHh--cCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 44566777665555555566788889999999 89999999999999999999999887653
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.56 E-value=0.38 Score=38.18 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHhhhhhhhHHH
Q 021318 166 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTG-ELFKAWNSCSQVTTARKAVT 244 (314)
Q Consensus 166 ~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g-~l~~~~~~~s~v~~~rki~s 244 (314)
+++...+.+++++.+++-......|+. +... ++.........++.-+.+....... +.--+. ...+.+..+.+
T Consensus 3 ~~~~~~~~~L~~Ai~~Ev~~t~~Lk~s-~gf~--~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAY---AvW~GiG~v~~ 76 (109)
T PRK10650 3 QFEWIHAAWLALAIVLEIVANIFLKFS-DGFR--RKIYGILSLAAVLAAFSALSQAVKGIDLSVAY---ALWGGFGIAAT 76 (109)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHHHHHHHHhhCchHHHH---HHHHHHHHHHH
Confidence 355678888999988887766666543 1111 2221111111111111111111110 000011 11233455667
Q ss_pred HhhhhhhcCCCcchhhhhhHHHHHHHHHHHh
Q 021318 245 LLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 275 (314)
Q Consensus 245 ills~~~fg~~~t~~~~iG~~lv~~Gv~ly~ 275 (314)
.++|+++|||++|+.+++|+.+++.|+..-+
T Consensus 77 ~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 77 LAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999998743
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.36 E-value=0.16 Score=47.50 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc--Ch--HHHHHHHHH-HHHHHHHHHHHhhchHHHH--HHHH-----H
Q 021318 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPET--TQ--MEMLFCSTV-VGLPMLIPPMLLTGELFKA--WNSC-----S 234 (314)
Q Consensus 167 ~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~--~~--~~~~~y~~~-~s~~~~~~~~~~~g~l~~~--~~~~-----s 234 (314)
....|..+++.|+++.|...++|||-..+.++. .. -..-++... |-.-+.+ ..-|+..+. +.+. .
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~---~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLL---MVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHH---HhcchHHHHHHHHhhhHHHHH
Confidence 457899999999999999999999976654321 00 001111111 1111110 112332221 1111 2
Q ss_pred hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 235 QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 235 ~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
..+.+.-+++.+++.++.+|+++...++|.++++.|..+-....
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 25667777889999999999999999999999999988766544
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.74 Score=36.26 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=34.4
Q ss_pred hhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 238 TARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 238 ~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
.+-.+.+.+.|+++|||++++.+++|+.+++.|+..-+..
T Consensus 65 GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 65 GIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3445667899999999999999999999999999876654
No 72
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.07 E-value=0.58 Score=36.82 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=34.2
Q ss_pred hhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 238 TARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 238 ~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
.+..+.+.++|+++|||++++.+++|+.+++.|+..-+..
T Consensus 64 GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 64 GIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 3445677899999999999999999999999999876543
No 73
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.05 E-value=0.18 Score=46.80 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhh-CCchhHHHHHhhcchHhHhhhhhhccccccccChhHH----HHHHHHHHhhheeEe
Q 021318 90 LSAVLMGSHGLTKGSLA-FLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTL 158 (314)
Q Consensus 90 ~s~~~~~~~~~~n~aL~-yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~----lsl~li~~Gv~l~~~ 158 (314)
.+++......+-..+++ +++.+...+.-+..|+...+.++++ +||+.+++++ ++.++++.|+.+...
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~--l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILI--LGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHH--hccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 56666666667778889 9999999998899999999999999 9999999999 999999999887643
No 74
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.04 E-value=0.6 Score=42.08 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=59.2
Q ss_pred HHHHHHHHH-HHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 87 YVKLSAVLM-GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 87 y~~~s~~~~-~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
....+++.. .+..+-+.+++..+.+...+.....|+..+++++++ ++|+++..++++..+++.|+.+....
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~--~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLL--LGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 334444433 467788899999999988888889999999999999 89999999999999999999877644
No 75
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.62 E-value=0.26 Score=43.62 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
.+.....-.+-++.++|.+-.+..+.-++.++++.+++.++ ++++.+..++++..++..|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence 34445555678889999888899999999999999999998 8999999999999999998765
No 76
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.60 E-value=0.08 Score=42.23 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCchhHHHHH-hhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhee
Q 021318 85 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 156 (314)
Q Consensus 85 ~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~-ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~ 156 (314)
++|..+-+++-.+...-++.+...+.|..+-. .|+.-+++++.++++ .+|..+++.++++.+++.|+.+.
T Consensus 42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence 34555555666677778888888777765554 588899999999998 56777888999999999999875
No 77
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.50 E-value=0.73 Score=41.90 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=53.1
Q ss_pred HHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 98 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 98 ~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
..+...+|+.+|-+++.+.-|..|.+-.+.+.++ ++|+.|..||+++..++.+++=.+.
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcccc
Confidence 3478889999999999999999999999999999 9999999999999999988775444
No 78
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.45 E-value=0.09 Score=40.34 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhCCchhH-HHHHhhcchHhHhhhhhhccccccccChhHHHHHHHH
Q 021318 92 AVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLL 149 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~-~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li 149 (314)
.++..+..+-..+++++|.++ |-+......+.+.+.+.++ ++|+.+..|++++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence 367788889999999998877 4555668889999999999 8999999999998764
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.08 E-value=0.078 Score=48.38 Aligned_cols=45 Identities=7% Similarity=-0.042 Sum_probs=31.2
Q ss_pred hhhHHHHhhhhh-hcCCC-----cchhhhhhHHHHHHHHHHHhccCCCCCC
Q 021318 239 ARKAVTLLLSYL-IFTKP-----LTEQHGTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 239 ~rki~sills~~-~fg~~-----~t~~~~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
+.-+.....|-+ +||.+ -.+.+++|++++++|..+|...|..+++
T Consensus 91 ~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~ 141 (254)
T PF07857_consen 91 VNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE 141 (254)
T ss_pred HHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence 333344444433 56532 2579999999999999999998876643
No 80
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=93.92 E-value=0.098 Score=41.36 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=40.0
Q ss_pred hhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 235 QVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 235 ~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
.+..+.++++.++|.++|+|+++..+++|++++++|+.+-.+..
T Consensus 65 ~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 65 AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 45667899999999999999999999999999999999887764
No 81
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.41 Score=44.83 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCCC
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 162 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~~ 162 (314)
.+..+-..++.|+.|.|.+.-+-+-+.+.+..++++..+ ++||.++...+++.+.++|-.+......+
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 466778899999999999998888899999999999999 99999999999999999997766655443
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.98 E-value=0.79 Score=43.19 Aligned_cols=131 Identities=8% Similarity=0.073 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHHHHHHHHH------hcccc-----cCCCCchhHHHHHHHH
Q 021318 27 ICSSGFFFGYLVNGVCEEYVYNR--LQFSYGWYFTFIQGFVYLVLIYL------QGFTT-----KQMMNPWKTYVKLSAV 93 (314)
Q Consensus 27 ~~~~gi~~~~~~~~~~qe~i~~~--~~f~~~~~lt~~q~~~~~~~~~~------~~~~~-----~~~~~~~~~y~~~s~~ 93 (314)
++..+.-.++.+..+++|+++++ ++.+. .-+...+.-+.+..... .+... .+...+.......+++
T Consensus 166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~ 244 (316)
T KOG1441|consen 166 ISAMISNLAFALRNILSKKLLTSKGESLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVL 244 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHH
Confidence 34445556778889999999853 33432 22222222222222221 11110 0111111122334566
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 94 ~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
....+..++..+..+|.-+++++-..|-+.+.+.++++ ++++.++.+.++..+.++|+++.+...
T Consensus 245 ~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 245 AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 77778889999999999999999999999999999998 789999999999999999999876543
No 83
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=92.12 E-value=1.4 Score=33.61 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=18.0
Q ss_pred hhhhHHHHhhhhhhcCCCcchhhhhhHHHH
Q 021318 238 TARKAVTLLLSYLIFTKPLTEQHGTGLLLI 267 (314)
Q Consensus 238 ~~rki~sills~~~fg~~~t~~~~iG~~lv 267 (314)
.+..+.+.++|+++|||++|+.+++|+.++
T Consensus 64 g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 64 GLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345677889999999999999999999875
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=90.15 E-value=2.2 Score=40.74 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=30.3
Q ss_pred hhhhHHHHhhhhhhcCC-------CcchhhhhhHHHHHHHHHHHhccCC
Q 021318 238 TARKAVTLLLSYLIFTK-------PLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 238 ~~rki~sills~~~fg~-------~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
-+.-+...+++.++||| +-.....+|++++++|+.+-+++-.
T Consensus 108 Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 108 GITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455677778888874 2224578899999999999998643
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=89.84 E-value=0.42 Score=43.36 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=41.2
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 281 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~ 281 (314)
....|-++|-++++++++++++..||++..+.+.|+.+........
T Consensus 49 l~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 49 LSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 5567888999999999999999999999999999999988876554
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=88.35 E-value=13 Score=34.28 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHH----HHHHHHHHhhh
Q 021318 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLI 154 (314)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~----lsl~li~~Gv~ 154 (314)
..++++..++.+...|-+.+-+.+.-.+-.+.++...+.+.++ +||+-+.+++ ++++++++|.+
T Consensus 200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~i--l~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFI--LKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheE--EEecCchhhHHHHHHHHHHHHHhhh
Confidence 4577788888888888888666665556666788889999999 8999888865 45555655654
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=82.56 E-value=10 Score=30.22 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=32.6
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHH
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 273 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~l 273 (314)
.+.+.=++|.+.++++.+|..+...++|+++++.|+.+
T Consensus 74 ~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 74 ANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 45677788999998888888899999999999999864
No 88
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=77.05 E-value=12 Score=34.57 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=22.1
Q ss_pred hHhhhhhhccccccccChhHHHHHHHHHHhhheeEe
Q 021318 123 PVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (314)
Q Consensus 123 ~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~ 158 (314)
+.++++.+. ++..+++..|++..++.+|-++++.
T Consensus 281 vSLl~Siiy--F~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 281 VSLLFSIIY--FENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHhheeeE--ecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345566666 6677777777777777777666543
No 89
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=73.27 E-value=1.8 Score=39.77 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=40.2
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
++...|.+++++++.+++||.|....+|..+.+.|+.+-.+...
T Consensus 129 ItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 129 ITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred EEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 67778999999999999999999999999999999999877653
No 90
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=73.19 E-value=50 Score=27.06 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=47.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhc-chHhHhhhhhh--ccccccccChhHHHHHHHHHHhhhe
Q 021318 80 MMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKST-KVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 80 ~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~-~pi~v~l~~~l--~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
+..|||.|+ -+++-.....+++.+...+.....++.--+ -.+..+++..+ +.--+++.++++.+++.+++.|+.+
T Consensus 61 ~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 61 SSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred ccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 356888776 344444456667777777776555443333 23444555553 1003689999999999999999864
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=69.86 E-value=10 Score=36.51 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=45.0
Q ss_pred hhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCCcCCC
Q 021318 236 VTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTAT 288 (314)
Q Consensus 236 v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~ 288 (314)
+..+.-++++.++..+-+|++|+...++.++-++|+++-+..+.+.+....+.
T Consensus 191 lSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 191 LSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred hhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 66778899999999999999999999999999999999998876654444433
No 92
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=69.37 E-value=4.6 Score=33.09 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=20.1
Q ss_pred hhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHH
Q 021318 240 RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 240 rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly 274 (314)
|-++-+.+|.+.+++ -....++|..+...|+..-
T Consensus 70 RGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 70 RGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 555666677776666 2234456666666665433
No 93
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=68.14 E-value=5.6 Score=31.28 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCchhHHHH-HhhcchHhHhhhhhhccccccccChhH-HHHHHHHHHhhheeE
Q 021318 85 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLM-FKSTKVLPVMVMGAFIPGLRRKYPAHE-YVSALLLVVGLILFT 157 (314)
Q Consensus 85 ~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i-~ks~~pi~v~l~~~l~~gl~~r~s~~~-~lsl~li~~Gv~l~~ 157 (314)
++|+.+-++.-++..+-++-|...+.+..+= ..|++.+++++.+..+ +|+...++ .++..++++|+.+..
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L---GE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL---GEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh---ccccccceeehhhhHHhhhhhhee
Confidence 4677776676667777888888866655443 3455788999999986 67777655 788899999987653
No 94
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=66.31 E-value=5.7 Score=31.15 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.9
Q ss_pred HhhhhhhcCCCcchhhhhhHHHHHHHHHH
Q 021318 245 LLLSYLIFTKPLTEQHGTGLLLIAMGITL 273 (314)
Q Consensus 245 ills~~~fg~~~t~~~~iG~~lv~~Gv~l 273 (314)
..+|+++++||+++.+..|.++..++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 35688899999999999999999888653
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=63.36 E-value=34 Score=32.13 Aligned_cols=69 Identities=7% Similarity=0.093 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhC-CchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 84 WKTYVKLSAVLMGSHGLTKGSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 84 ~~~y~~~s~~~~~~~~~~n~aL~y-vs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
+++.+..+.+-+.+-.+-+.-++- =|. +.+++--+.=++.++++.+. ++.+.++.||++++.+.+|+.+
T Consensus 241 ~~Di~l~s~~gavGQ~FI~~TI~~FGsl-t~t~I~ttRk~~si~lS~i~--f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 241 AFDILLYSTCGAVGQLFIFYTIERFGSL-TFTTIMTTRKMVSIMLSCIV--FGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHhhhhhhheehhhHhhcccH-HHHHHHHHHHHHHHHHHHHH--hCCccchhhccCeeeehHHHHH
Confidence 555555565544443333333322 122 22222334456777788888 7899999999998888888764
No 96
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=60.77 E-value=1.4e+02 Score=27.76 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecCC
Q 021318 117 KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 161 (314)
Q Consensus 117 ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~~ 161 (314)
....=..+.++++++ +-|.++..-.-+.++++.|+.+=++++.
T Consensus 293 TTaRKavTi~lSfll--FsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 293 TTARKAVTILLSFLL--FSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHhHhHHHHHHHHHH--HcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 334445678899999 8999999999999999999999888773
No 97
>PRK13499 rhamnose-proton symporter; Provisional
Probab=60.54 E-value=46 Score=31.84 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHH-HhhcchHhHhhhhhhcccccccc-------ChhHHHHHHHHHHhhheeEe----
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLM-FKSTKVLPVMVMGAFIPGLRRKY-------PAHEYVSALLLVVGLILFTL---- 158 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i-~ks~~pi~v~l~~~l~~gl~~r~-------s~~~~lsl~li~~Gv~l~~~---- 158 (314)
+++...+......+.+|+.++..+- .--...+...+++.++ ++|=. -..-.++++++++|+++.+.
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5667788888999999966554332 1223345566666666 44311 13457899999999999888
Q ss_pred cCCCCC-----CCchHHHHHHHHHHHHHHHHHH
Q 021318 159 ADAQTS-----PNFSMIGVIMISGALIMDSFLG 186 (314)
Q Consensus 159 ~~~~~~-----~~~~~~G~~l~l~s~~~~al~~ 186 (314)
.|.+.+ ......|+.++++|.+.++.++
T Consensus 158 k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 KERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 443211 1234679999999999999988
No 98
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=60.28 E-value=1.1e+02 Score=30.65 Aligned_cols=22 Identities=9% Similarity=-0.242 Sum_probs=15.5
Q ss_pred hhhcCCCcchhhhhhHHHHHHH
Q 021318 249 YLIFTKPLTEQHGTGLLLIAMG 270 (314)
Q Consensus 249 ~~~fg~~~t~~~~iG~~lv~~G 270 (314)
--++|++-+|....+..++.+=
T Consensus 174 ~~ilGt~~~W~~l~~~~~i~~~ 195 (485)
T KOG0569|consen 174 PSLLGTEDLWPYLLAFPLIPAL 195 (485)
T ss_pred HHhcCCCcchHHHHHHHHHHHH
Confidence 4478999888877777665433
No 99
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=60.27 E-value=1.3e+02 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEec
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~ 159 (314)
+....+-.+...-.+|.+=-...-.-+...+.+.+.+..+ ++.+.+..=.+++.+++..+.+....
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~L--f~~~~t~~F~lG~~lVi~Si~lY~~~ 323 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIAL--FDFQLTLYFLLGALLVILSIFLYSLY 323 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--ccCCchHHHHHHHHHHHHHHHHhhcC
Confidence 3444455566777788776566666677888999999888 67888888888888888888877643
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=59.90 E-value=33 Score=31.16 Aligned_cols=148 Identities=10% Similarity=0.095 Sum_probs=84.2
Q ss_pred cccceEEeeecCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHH-H---H------------
Q 021318 6 EQTRSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNR--LQFSYGWYFTFIQGFV-Y---L------------ 67 (314)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~gi~~~~~~~~~~qe~i~~~--~~f~~~~~lt~~q~~~-~---~------------ 67 (314)
+-|+-++|+-+.+-.+.++=-.|+..|..+-..+-+-.++.-.- +.+.++-.+.++.... + +
T Consensus 122 PIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~ 201 (337)
T KOG1580|consen 122 PIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRT 201 (337)
T ss_pred CcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccC
Confidence 56688999999988887776677888877766666654454322 3455555554332211 0 0
Q ss_pred ---------HHHHH-hc----c-cc-------cCC-CCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhH
Q 021318 68 ---------VLIYL-QG----F-TT-------KQM-MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPV 124 (314)
Q Consensus 68 ---------~~~~~-~~----~-~~-------~~~-~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v 124 (314)
++..+ .+ + .+ .+| ..-|++...+++..+++.++-..-..+-+--+-.+...+.-.|+
T Consensus 202 g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT 281 (337)
T KOG1580|consen 202 GTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT 281 (337)
T ss_pred chhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence 01000 00 0 00 011 11255555666666666666555444422212222233445778
Q ss_pred hhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 125 MVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 125 ~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
.+.++++ ++...+.+||++..++..|...
T Consensus 282 il~SVll--f~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 282 ILISVLL--FNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHH--hcCcCcHHHHHHHHHHHHHhhh
Confidence 8888888 7888899999888888877664
No 101
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.49 E-value=13 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=25.9
Q ss_pred HhhhhhhcCCCcchhhhhhHHHHHHHHHH
Q 021318 245 LLLSYLIFTKPLTEQHGTGLLLIAMGITL 273 (314)
Q Consensus 245 ills~~~fg~~~t~~~~iG~~lv~~Gv~l 273 (314)
+.+|+++.+||+.+.++.|..++.+|+..
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998865
No 102
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=56.84 E-value=95 Score=28.46 Aligned_cols=184 Identities=14% Similarity=0.230 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhh-cchHhHhhhhhhccccccccChhHH----HHHHHHHHhhheeEecCCCC---
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQT--- 163 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks-~~pi~v~l~~~l~~gl~~r~s~~~~----lsl~li~~Gv~l~~~~~~~~--- 163 (314)
++...+-..+..|.+++.+|-..=.-+ +-.+-+-+++++. ++|=-+..+. ++++++++|+.+.+..|..+
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 445566667888888866543321111 1245556788888 7887776664 78899999999999877522
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--c--ChHHHHHHHHHHHH------------HHHHHH-HHhhch
Q 021318 164 -SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPE--T--TQMEMLFCSTVVGL------------PMLIPP-MLLTGE 225 (314)
Q Consensus 164 -~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~--~--~~~~~~~y~~~~s~------------~~~~~~-~~~~g~ 225 (314)
++++.-.|+..++.|.+.+-.|.+..+-.. -.+- . ....|......++. .-..|. .+..|+
T Consensus 145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~-v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GN 223 (288)
T COG4975 145 ENPSNLKKGIVILLISTLGYVGYVVLFQLFD-VDGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGN 223 (288)
T ss_pred cChHhhhhheeeeeeeccceeeeEeeecccc-ccchhhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhH
Confidence 123334566666666655444443333211 0000 0 00111111000000 000000 011122
Q ss_pred HHHHHHH--HH-----hhhhhhhHHHHhhhhhhcCCCcchhh----hhhHHHHHHHHHHHhccC
Q 021318 226 LFKAWNS--CS-----QVTTARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 226 l~~~~~~--~s-----~v~~~rki~sills~~~fg~~~t~~~----~iG~~lv~~Gv~ly~~~k 278 (314)
++..++. .+ ....+.-+++.+-++++++|+=|..+ ++|+.+++.|..+-...|
T Consensus 224 l~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 224 LFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 2111110 00 03344556778889999999887654 578888888887766554
No 103
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=56.73 E-value=17 Score=34.52 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=41.3
Q ss_pred ccccChhHHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----C-Cc---ChHHHH
Q 021318 135 RRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMN-----P-ET---TQMEML 205 (314)
Q Consensus 135 ~~r~s~~~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~-----~-~~---~~~~~~ 205 (314)
++.+.+..++.+.++..........+. ...+..|-+..+++++.-+. +..++.+.. + +. +....+
T Consensus 126 r~~l~~~~~~~~pl~~~~~~~~~~~~~---~~~d~LGrl~~ii~~~~l~~---~~~~l~~~~~~~~~~~~~~~~~~~~~l 199 (340)
T PF12794_consen 126 RRQLRWLIWVLVPLLFISIFAENLPDG---LARDVLGRLAFIILLLLLAV---FLWRLLRPGWGLYQPKPDSWIHRLRYL 199 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchh---hhhhhHHHHHHHHHHHHHHH---HHHHHHccccccccCCCcchhHHHHHH
Confidence 344555555555444444443322221 22456777777766655433 222333221 1 01 223345
Q ss_pred HHHHHHHHHHHHHHHHhhchHH
Q 021318 206 FCSTVVGLPMLIPPMLLTGELF 227 (314)
Q Consensus 206 ~y~~~~s~~~~~~~~~~~g~l~ 227 (314)
.|..+...|..+..+...|-..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~y 221 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYY 221 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 5666667777666555555433
No 104
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=54.56 E-value=11 Score=27.56 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred hhhhcCCCcchh-hhhhHHHHHHHHHHHhccCCCCC-CCcCCCCchhhhhhccccc
Q 021318 248 SYLIFTKPLTEQ-HGTGLLLIAMGITLKLLPADDKP-IKRTATSSFKVNIRKLSFS 301 (314)
Q Consensus 248 s~~~fg~~~t~~-~~iG~~lv~~Gv~ly~~~k~~~k-~~~~~~~~~~~~~~~~~~~ 301 (314)
++-+||..+-.. --+|.+-..+|+..+...+.+++ ....+.++.-.++|+--.+
T Consensus 4 ~Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g~k~~~~~~ppi~asS~DeE~fIk~ 59 (71)
T PF11022_consen 4 AYTIFGRQVQSHYLAIATLGTVFGGVYLATSGSKKPKKATPPINASSSDEEKFIKE 59 (71)
T ss_pred eeeecccccccchhHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 345677776543 34566666666666555544333 2344444444455555444
No 105
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=52.47 E-value=1.1e+02 Score=24.02 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=40.8
Q ss_pred HHHH-HHHHHHHHHHHhhCCchhHHHH---HhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 90 LSAV-LMGSHGLTKGSLAFLNYPAQLM---FKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 90 ~s~~-~~~~~~~~n~aL~yvs~~~~~i---~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
+++. |++..-.+-.+.+.-| ..|+ =-..+....++++.++ +||+.++....+.+.++++|..
T Consensus 40 IAffEY~l~VPANRiG~~~~s--~~QLKi~QEvitL~vF~~Fsv~~--l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 40 IAFFEYCLQVPANRIGYQTFS--LAQLKIIQEVITLVVFAPFSVFY--LGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhCcchhhhccccC--HHHHHHHHHHHhhheeHHHHHHH--hCCCccHHHHHHHHHHHHhhhe
Confidence 3444 6666556666666533 3333 2233455556788888 8999999999999988877654
No 106
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.73 E-value=1.4e+02 Score=24.96 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc--CCCCchhHHHHHHHHHHHHHHHH-----hcccccC--CCCchhHHHH--HHH
Q 021318 24 QFLICSSGFFFGYLVNGVCEEYVYNR--LQFSYGWYFTFIQGFVYLVLIYL-----QGFTTKQ--MMNPWKTYVK--LSA 92 (314)
Q Consensus 24 ~l~~~~~gi~~~~~~~~~~qe~i~~~--~~f~~~~~lt~~q~~~~~~~~~~-----~~~~~~~--~~~~~~~y~~--~s~ 92 (314)
..+....++-++.+ .-.|..+..+ +.-..|+.-++..+.+..+.... .+..... +..|||.|.. ++.
T Consensus 3 ~~l~ll~~i~aG~~--l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa 80 (150)
T COG3238 3 MYLYLLFAILAGAL--LPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA 80 (150)
T ss_pred cHHHHHHHHHHhhh--hhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccc----cccChhHHHHHHHHHHhhhee
Q 021318 93 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLR----RKYPAHEYVSALLLVVGLILF 156 (314)
Q Consensus 93 ~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~----~r~s~~~~lsl~li~~Gv~l~ 156 (314)
.|..++...+--+.-.. +..+.-+.-++.-+++..+= +. ++.+..++++++++.+|+.++
T Consensus 81 ~~vt~s~~l~p~lGa~~--t~~l~i~gQli~glliD~fG--~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 81 IFVTSSILLAPRLGAAT--TIALVIAGQLIMGLLIDHFG--WFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhHHhccchhHHH--HHHHHHHHHHHHHHHHHhhc--ccCCCcCCCCHHHHHHHHHHHHHHHHh
No 107
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.11 E-value=8.5 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=12.7
Q ss_pred hhhcccccccchhhhccc
Q 021318 294 NIRKLSFSEREEADEEKR 311 (314)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~ 311 (314)
.-..-||+|||.++||.+
T Consensus 48 eraEDSGnES~Gd~EeeL 65 (81)
T PF00558_consen 48 ERAEDSGNESDGDEEEEL 65 (81)
T ss_dssp CTTTCCHCTTTTCCHH-C
T ss_pred cccccCCCCCCCcHHHHH
Confidence 445568999998888843
No 108
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=47.56 E-value=1.4e+02 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=29.1
Q ss_pred HHHHHHHh-------hCCchhHHHHHhhcchHhHhhhhhhccccccccC
Q 021318 98 HGLTKGSL-------AFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYP 139 (314)
Q Consensus 98 ~~~~n~aL-------~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s 139 (314)
....|++| ..-++|+.++.|...|..-.+++.++ +.+-|+
T Consensus 226 ~~l~nlsLi~~~~~v~~~dIP~l~i~~~~~~~i~lvm~vIi--~~~Iyt 272 (349)
T COG3949 226 LFLINLSLIALYDKVVNYDIPLLTIAKNFSPLIGLVMSVII--WLEIYT 272 (349)
T ss_pred HHHHHHHHHhhcchhhccCCcHHHHHHhccHHHHHHHHHHH--HHHHHH
Confidence 34555555 34678999999999998888888877 445444
No 109
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=47.38 E-value=6.6 Score=23.15 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=7.8
Q ss_pred ccccchhhhcc
Q 021318 300 FSEREEADEEK 310 (314)
Q Consensus 300 ~~~~~~~~~~~ 310 (314)
|++|||||+|.
T Consensus 3 GSddEeed~ea 13 (28)
T PF10587_consen 3 GSDDEEEDEEA 13 (28)
T ss_pred CCccccccHHH
Confidence 56677788775
No 110
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=46.43 E-value=8.2 Score=34.46 Aligned_cols=15 Identities=20% Similarity=-0.035 Sum_probs=7.4
Q ss_pred HHHHHHHhccCCCCC
Q 021318 268 AMGITLKLLPADDKP 282 (314)
Q Consensus 268 ~~Gv~ly~~~k~~~k 282 (314)
++|...|.|.|.+++
T Consensus 171 l~gGGa~yYfK~~K~ 185 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKP 185 (218)
T ss_pred HhhcceEEEEEEecc
Confidence 344455556654433
No 111
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=44.68 E-value=3e+02 Score=26.59 Aligned_cols=51 Identities=2% Similarity=0.025 Sum_probs=24.7
Q ss_pred CCcchhhhhhHHH--HHHHHHHHhccCCCCCCCcCCCCchhhhhhcccccccc
Q 021318 254 KPLTEQHGTGLLL--IAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSERE 304 (314)
Q Consensus 254 ~~~t~~~~iG~~l--v~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~ 304 (314)
+.++..+++.+.+ .+.|+..-.....|..++..+--..|+.+++..-++++
T Consensus 158 ~gv~~~~iL~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~ 210 (364)
T PF03605_consen 158 HGVSLLQILAVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPI 210 (364)
T ss_pred cCCCHHHHHHhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhcccccccc
Confidence 6788888877644 44444443332222222222223355555555554443
No 112
>PF15471 TMEM171: Transmembrane protein family 171
Probab=43.87 E-value=18 Score=33.19 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCCC
Q 021318 258 EQHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 258 ~~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
..|++|-++|++|+-.+..+.-|||
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeec
Confidence 4799999999999998887754443
No 113
>PF14851 FAM176: FAM176 family
Probab=43.78 E-value=23 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHhcc
Q 021318 263 GLLLIAMGITLKLLP 277 (314)
Q Consensus 263 G~~lv~~Gv~ly~~~ 277 (314)
|.++.++-+..-.-.
T Consensus 33 GLlLtLcllV~risc 47 (153)
T PF14851_consen 33 GLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHhhhee
Confidence 333444444333333
No 114
>PRK01637 hypothetical protein; Reviewed
Probab=41.22 E-value=11 Score=34.86 Aligned_cols=40 Identities=20% Similarity=0.030 Sum_probs=22.5
Q ss_pred chhhhhhHHHHHHHHHHHhccCCCCCCCcCCCCchhhhhhcccccccchhhhccc
Q 021318 257 TEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKR 311 (314)
Q Consensus 257 t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (314)
-|.++.+.++.+++.+-+.+.+.|+. ..+-|.||+||.|+
T Consensus 247 lWlyl~~~ilL~Gaelna~~~~~~~~---------------~~~~~~~~~~~~~~ 286 (286)
T PRK01637 247 VWVYLSWCIVLLGAEITATLGEYRKL---------------KQAAEQEEDDEPKK 286 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcccccccccccCC
Confidence 45566666666666665555432211 14556677777664
No 115
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=40.57 E-value=35 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhh-hhhHHHHhhhhhhcCCCc-chhhhhhHHHHHHHHHHHhccCCCCCC
Q 021318 226 LFKAWNSCSQVTT-ARKAVTLLLSYLIFTKPL-TEQHGTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 226 l~~~~~~~s~v~~-~rki~sills~~~fg~~~-t~~~~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
.+..||.|-.++. +-+.++.+ +.+.++... .....-|++-+++|++.+-+.|.+++.
T Consensus 154 ~~siWn~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred eEEEehhhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3445676665543 33333333 666655433 334456778888899999888877543
No 116
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=39.04 E-value=19 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhccCCCCCC
Q 021318 261 GTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
.+-..++++|+.+|.+.++++|.
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchh
Confidence 33357899999999999766553
No 117
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=38.09 E-value=21 Score=27.75 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=6.3
Q ss_pred ccccchhhhc
Q 021318 300 FSEREEADEE 309 (314)
Q Consensus 300 ~~~~~~~~~~ 309 (314)
.++.++.|||
T Consensus 94 ~~~~~~~Dee 103 (103)
T PF06422_consen 94 KKKKKKNDEE 103 (103)
T ss_pred hhhcccCCCC
Confidence 4556666776
No 118
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=37.72 E-value=2.5e+02 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=21.8
Q ss_pred cCCCcchhhhhhHHHHHHHHHHHhccCC
Q 021318 252 FTKPLTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 252 fg~~~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
++.+-...-++|++++++|+.+-.++..
T Consensus 129 ~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 129 LATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred ccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 3344456789999999999999888753
No 119
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.43 E-value=5.2 Score=37.64 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------cCh----HHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHH-
Q 021318 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPE------TTQ----MEMLFCSTVVGLPMLIPPMLLTGELFK--AWNSC- 233 (314)
Q Consensus 167 ~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~------~~~----~~~~~y~~~~s~~~~~~~~~~~g~l~~--~~~~~- 233 (314)
.+..|..+.+.|.++-+..-+.+||-.++-+. ..+ .+-++|..++.. .-||... +..+.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm--------~vGei~NFaAYaFAP 89 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTM--------IVGEIANFAAYAFAP 89 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHH--------HHHhHhhHHHHhhch
Confidence 45789999988888777777777776554211 111 223334332211 2233321 11121
Q ss_pred ----HhhhhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCCcCCCCchhhhhhcccc
Q 021318 234 ----SQVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSF 300 (314)
Q Consensus 234 ----s~v~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~ 300 (314)
...+.+.-+.+.+++.++.+|++++...+|.+++++|...-.....+++ +..+..+.+++.++
T Consensus 90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~----~i~t~~el~~~~~~ 156 (335)
T KOG2922|consen 90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ----EIESVEEVWELATE 156 (335)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc----ccccHHHHHHHhcC
Confidence 2267778888999999999999999999999999999776665543333 24455555555544
No 120
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=36.55 E-value=23 Score=26.71 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.2
Q ss_pred CcchhhhhhHHHHHHHHHHHhccCCCCC
Q 021318 255 PLTEQHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 255 ~~t~~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
.+++.+++|+.++++|..+|...+.+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4678999999999999999987655544
No 121
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.45 E-value=17 Score=24.11 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHhccCCCCC
Q 021318 262 TGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 262 iG~~lv~~Gv~ly~~~k~~~k 282 (314)
+-..++++|++++.+.+++++
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHcccchh
Confidence 344677889999998766533
No 122
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=35.43 E-value=2.5e+02 Score=22.93 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHHHHHHHHHHHHHHHHHhhchH----------HH-------HHH-HHH
Q 021318 173 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGEL----------FK-------AWN-SCS 234 (314)
Q Consensus 173 ~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~y~~~~s~~~~~~~~~~~g~l----------~~-------~~~-~~s 234 (314)
++.+++-.+-++...+.-++.++.+ +++.-.+.++..++.......+..++. |. ..- .+.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 4455555555666666666655433 356666666666666555443332221 10 000 000
Q ss_pred -----h--------hhhhhh-HHHHhhhhh-hc---CCCcchhhhhhHHHHHHHHHH
Q 021318 235 -----Q--------VTTARK-AVTLLLSYL-IF---TKPLTEQHGTGLLLIAMGITL 273 (314)
Q Consensus 235 -----~--------v~~~rk-i~sills~~-~f---g~~~t~~~~iG~~lv~~Gv~l 273 (314)
. ....-+ +.++++..+ +| .+|+++...+|.+++++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 0 112222 234444443 33 378999999999999999864
No 123
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=35.40 E-value=41 Score=32.63 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCcchhhhhhHHHHHHHHHHHhccCCCC--CCCcCCCCchhhhhhcccccccchhhhcccC
Q 021318 253 TKPLTEQHGTGLLLIAMGITLKLLPADDK--PIKRTATSSFKVNIRKLSFSEREEADEEKRA 312 (314)
Q Consensus 253 g~~~t~~~~iG~~lv~~Gv~ly~~~k~~~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (314)
...+....++|.++.+.-+.........+ -.+.+..++.+..++.+.|++ .+.|+||++
T Consensus 293 ~~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k~~~~~~e~~~l~~~dG~~-~~~d~Ek~G 353 (426)
T KOG2592|consen 293 VSTFDATNIIGLIFLLLCILYSALRASSRTQLRKLTRSNEEEPLLPDEDGGG-RANDNEKDG 353 (426)
T ss_pred cccccccchHHHHHHHHHHHHHHhhccccccccccccccccccCccCCCCCc-ccccccCCC
Confidence 34556677888877666654444433222 222222223333444466664 557777765
No 124
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=25 Score=24.74 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHhccCCCCCCC
Q 021318 259 QHGTGLLLIAMGITLKLLPADDKPIK 284 (314)
Q Consensus 259 ~~~iG~~lv~~Gv~ly~~~k~~~k~~ 284 (314)
+..+=+.+++.|++++.+.+.++++.
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~K~~~ 38 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGKKGEF 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhH
Confidence 34455678899999999987665543
No 125
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.95 E-value=19 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCCcC
Q 021318 261 GTGLLLIAMGITLKLLPADDKPIKRT 286 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~~~k~~~k~~~~ 286 (314)
..|+++.++.+.+-.+.|+|.+++..
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56889999999998888877665544
No 126
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=33.65 E-value=22 Score=34.36 Aligned_cols=70 Identities=23% Similarity=0.187 Sum_probs=35.0
Q ss_pred hhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccCCCCCCCcCCCCchhhhhhcccccccchhhhcccC
Q 021318 239 ARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRA 312 (314)
Q Consensus 239 ~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (314)
.|-.-.+=...--+-.|+=+.|++|.++++. ..+...| ||+++-......+ ..||...-.+||+||-+||
T Consensus 161 ~Raas~Lg~d~~el~~pliP~~i~Gl~~vl~--lA~~lG~-kErkRlg~~~~~~-~~~~~~~~~~~~~~~~~rp 230 (433)
T COG2851 161 ARAASVLGVDPAELFVPLIPIQIIGLVLVLA--LAWLLGK-KERKRLGVIDLSE-ELEQLVELSEEDQEELKRP 230 (433)
T ss_pred HHHHHHhCCCHHHHHhhhhHHHHHHHHHHHH--HHHHhhH-HHHHHhhhccCch-hhhhccccCCchhhhhhcc
Confidence 3433333333334456888899999998887 3333333 2221111111111 1355555555555555666
No 127
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.95 E-value=12 Score=31.04 Aligned_cols=51 Identities=27% Similarity=0.113 Sum_probs=29.5
Q ss_pred cchhhhhhHHHHHHHHHHHhccCCCCCCCcCCCCchhhhhhcccccccchhhhcccC
Q 021318 256 LTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRA 312 (314)
Q Consensus 256 ~t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (314)
++...++|..+++....+|.+....||..+..-.++++ -.+|...||||.|
T Consensus 118 ~~L~tllGsg~iFatGV~YG~mALGKKadr~~maaa~d------pa~sqq~~q~~l~ 168 (175)
T KOG4085|consen 118 LTLTTLLGSGIIFATGVLYGLMALGKKADRISMAAAQD------PAQSQQADQEKLA 168 (175)
T ss_pred hhHHHHhCcchhhhhHHHHHHHHhcccccHHHHHHhcC------cccCcccchhhCc
Confidence 35566778888888888888776555544333223332 1344455555554
No 128
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=32.63 E-value=20 Score=27.04 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=15.6
Q ss_pred chhhhhhHHHHHHHHHHHhcc
Q 021318 257 TEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 257 t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
+....+|.++.++|.+++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888887765
No 129
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=32.44 E-value=15 Score=34.09 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred cccccChhH-HHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcChHHHHH
Q 021318 134 LRRKYPAHE-YVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF 206 (314)
Q Consensus 134 l~~r~s~~~-~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~~~~~~~~~~~~~ 206 (314)
||||.=..- .+|++++++-..+.+.-... .+.-..|++++++.+++.=..+.|.+ ++++++. +.|+++-
T Consensus 72 F~RrLLCPLGlLCiilimi~lLv~~L~tLt--GQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GA-s~WtiLa 141 (381)
T PF05297_consen 72 FKRRLLCPLGLLCIILIMIVLLVSMLWTLT--GQTLFVGIVILFLCCLLALGVWFYMW-LLRELGA-SFWTILA 141 (381)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh-HHHHHHH
Confidence 467665443 56666666555554433221 23345788877776665444556634 6677763 4565543
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=31.72 E-value=58 Score=23.40 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHhccCCCCC
Q 021318 259 QHGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 259 ~~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
.-.+|+..+++|.++|....+++.
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 346789999999999998765544
No 131
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=29.63 E-value=1.9e+02 Score=26.23 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.4
Q ss_pred chhhhhhHHHHHHHHHHH
Q 021318 257 TEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 257 t~~~~iG~~lv~~Gv~ly 274 (314)
-..+.+|..+.+.=..+|
T Consensus 187 aipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 187 AIPNVLGFLLGLIQLILY 204 (243)
T ss_pred EcccHHHHHHHHHHHHHh
Confidence 356778998888888888
No 132
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.44 E-value=37 Score=28.55 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=15.8
Q ss_pred hhhhhhcccccccchhhhcccCC
Q 021318 291 FKVNIRKLSFSEREEADEEKRAP 313 (314)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~ 313 (314)
.+.-|....|++-+++.|-+.|+
T Consensus 98 ~~~~w~~l~Gk~~~~~y~s~spl 120 (154)
T PF04478_consen 98 LTKWWYSLLGKKISDKYESNSPL 120 (154)
T ss_pred HHHHHHHHhCCccccccccCCCC
Confidence 45578888998865555555554
No 133
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.83 E-value=54 Score=22.17 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=6.1
Q ss_pred HHHHHHHHHhccC
Q 021318 266 LIAMGITLKLLPA 278 (314)
Q Consensus 266 lv~~Gv~ly~~~k 278 (314)
+++.|+.+-+..|
T Consensus 13 ~~lLg~~I~~~~K 25 (50)
T PF12606_consen 13 MGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHhh
Confidence 3444555544444
No 134
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=27.82 E-value=26 Score=31.16 Aligned_cols=21 Identities=0% Similarity=-0.144 Sum_probs=14.3
Q ss_pred chhhhhhHHHHHHHHHHHhcc
Q 021318 257 TEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 257 t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
...+-.|+..--++|+..++.
T Consensus 199 ~lA~~lgmteSqvkVWFQNRR 219 (288)
T KOG0847|consen 199 QLAQELNMTESQVKVWFQNRR 219 (288)
T ss_pred HhhccccccHHHHHHHHhcch
Confidence 345566777777888777654
No 135
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=27.15 E-value=49 Score=30.89 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=31.3
Q ss_pred hHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 021318 241 KAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 277 (314)
Q Consensus 241 ki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~ 277 (314)
-+++-++|.-+.++.++..||+|+..+..|+..-.+.
T Consensus 123 iIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 123 IIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3456678888999999999999999999998876654
No 136
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=26.84 E-value=47 Score=30.51 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=19.7
Q ss_pred CcchhhhhhHHHHHHHHHHHhccC
Q 021318 255 PLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 255 ~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
.+|..|+++..++.+|+.+..+.+
T Consensus 234 ~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 234 WLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999987765443
No 137
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.53 E-value=3.9e+02 Score=23.47 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=38.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHH-----Hhc-ccccCCCCchhHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchH
Q 021318 49 RLQFSYGWYFTFIQGFVYLVLIY-----LQG-FTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVL 122 (314)
Q Consensus 49 ~~~f~~~~~lt~~q~~~~~~~~~-----~~~-~~~~~~~~~~~~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi 122 (314)
.+.+.+++..+..-.+++-...+ .-. ...+..+.++|+|+.....-.+-..+-..+-.++|-+... ...|+
T Consensus 120 ~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~---~L~pi 196 (226)
T COG4858 120 KNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP---QLPPI 196 (226)
T ss_pred cCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc---CCchH
Confidence 34556666655444444322222 111 1123345577888776554433444444666666644432 24466
Q ss_pred hHhhhhhh
Q 021318 123 PVMVMGAF 130 (314)
Q Consensus 123 ~v~l~~~l 130 (314)
+..+.|-+
T Consensus 197 ~l~IiGav 204 (226)
T COG4858 197 ALTIIGAV 204 (226)
T ss_pred HHHHHHHH
Confidence 65555544
No 138
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=26.43 E-value=50 Score=31.84 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=36.8
Q ss_pred chhhhhhHHHHHHHHHHHhccCCCCCCCcCCCC-chhhhhhcccccc
Q 021318 257 TEQHGTGLLLIAMGITLKLLPADDKPIKRTATS-SFKVNIRKLSFSE 302 (314)
Q Consensus 257 t~~~~iG~~lv~~Gv~ly~~~k~~~k~~~~~~~-~~~~~~~~~~~~~ 302 (314)
++.--.|++++++++..|.+.-+||+++++.-+ +.++..|+|+-+.
T Consensus 300 tfaIpl~Valll~~~La~imc~rrEg~~~rd~~ts~~q~fh~c~i~~ 346 (449)
T KOG4482|consen 300 TFAIPLGVALLLVLALAYIMCCRREGQKKRDDKTSDIQNFHHCSIRD 346 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhhhheeeeeecC
Confidence 455567889999999999999999998888777 6677778876543
No 139
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=25.34 E-value=89 Score=28.66 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhC----CchhHHHHHhhcchHhHhhhhhhccccccccChhHH----HHHHHHHHhhhe
Q 021318 89 KLSAVLMGSHGLTKGSLAF----LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLIL 155 (314)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~y----vs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~----lsl~li~~Gv~l 155 (314)
.+++....++.+...|-+- ++++..| +..+...+.+.++ +|||-+.+++ .+++++++|..+
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQ----lgViisTiGGIl~--L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQ----LGVIISTIGGILF--LGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhceeeeeeHhh----heeeeeecceEEE--EeccCchhhhhhhhhhHHHHHHHhhh
Confidence 3455555555555555444 3444444 3456667788888 8999998886 445555555443
No 140
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.13 E-value=48 Score=30.75 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccCCCCCCCcCCCCchhhhhhcccc-cccchhhhcccCC
Q 021318 265 LLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSF-SEREEADEEKRAP 313 (314)
Q Consensus 265 ~lv~~Gv~ly~~~k~~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (314)
+++++|++++-..|+|++.. ++++. +-||.|+-+..||
T Consensus 243 ll~l~Gii~~~~~r~~~~~~-----------~~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQGYV-----------PAPTSPRIDEDEMMQRVPP 281 (281)
T ss_pred HHHHHHHHHHHHHhhhccCc-----------CCCcccccCcccccccCCC
Confidence 56677887777776665543 23333 5567777777776
No 141
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.01 E-value=75 Score=28.71 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhhe
Q 021318 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (314)
Q Consensus 90 ~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l 155 (314)
-+++-.+...++-|.++-.|-.++.|.-+..-.|..+-|.++ +.+..+...+.++++..+..++
T Consensus 230 Sgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGflsg~i 293 (309)
T COG5070 230 SGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHHHHHHH
Confidence 345555566677777777777778877777777777777777 6676666666665554444333
No 142
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=24.88 E-value=6.9e+02 Score=24.77 Aligned_cols=82 Identities=15% Similarity=0.355 Sum_probs=36.8
Q ss_pred ccChhHHHHHHHHHHhhheeEecCCCCC---------CCchHHHHHHHHHHHHHHHH-----HHHHHHHHHhhCC-CcCh
Q 021318 137 KYPAHEYVSALLLVVGLILFTLADAQTS---------PNFSMIGVIMISGALIMDSF-----LGNLQEAIFTMNP-ETTQ 201 (314)
Q Consensus 137 r~s~~~~lsl~li~~Gv~l~~~~~~~~~---------~~~~~~G~~l~l~s~~~~al-----~~v~q~~l~~~~~-~~~~ 201 (314)
|+...-.+++++..+.+.+...-+...- ....-.|.+..+.+.+-.-+ .-...+.+.+..+ +..+
T Consensus 19 k~klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~ 98 (441)
T PF02447_consen 19 KFKLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAP 98 (441)
T ss_pred HHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCccc
Confidence 4445556666666655554443222110 01123444444444333222 1223333444333 2245
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021318 202 MEMLFCSTVVGLPMLIP 218 (314)
Q Consensus 202 ~~~~~y~~~~s~~~~~~ 218 (314)
+.+..-..+++.|.++-
T Consensus 99 ~A~~i~g~iv~IPvF~d 115 (441)
T PF02447_consen 99 LALAITGFIVGIPVFFD 115 (441)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 66666666667776653
No 143
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.81 E-value=73 Score=28.10 Aligned_cols=22 Identities=18% Similarity=-0.064 Sum_probs=14.7
Q ss_pred hhh--HHHHHHHHHHHhccCCCCC
Q 021318 261 GTG--LLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 261 ~iG--~~lv~~Gv~ly~~~k~~~k 282 (314)
..| .+++++|+..|...++|..
T Consensus 107 ~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 107 TSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HhhHHHHHHHHHHHHHHhhhhccC
Confidence 455 5777778887777665543
No 144
>PF14150 YesK: YesK-like protein
Probab=23.73 E-value=2e+02 Score=21.47 Aligned_cols=64 Identities=14% Similarity=0.338 Sum_probs=29.6
Q ss_pred hHhhhhhhccccccccChhHH---HH--HHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 021318 123 PVMVMGAFIPGLRRKYPAHEY---VS--ALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAI 192 (314)
Q Consensus 123 ~v~l~~~l~~gl~~r~s~~~~---ls--l~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l 192 (314)
.+..+++++ |||+|.++. ++ +.++.++.+..+.--. +...-.|+..+....+..+..+...++.
T Consensus 11 i~f~~S~~l---r~r~p~k~~~~il~~ililis~~~v~~S~f~v---GGweGmg~g~~~~~v~ig~~ig~i~~~~ 79 (81)
T PF14150_consen 11 IVFGVSVLL---RKRFPKKQPEIILPLILILISLLTVLISIFLV---GGWEGMGLGVIAFFVFIGSIIGYIAHQF 79 (81)
T ss_pred HHHHHHHHH---HHhCCCcchhHHHHHHHHHHHHHHHHHHHheE---cchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 788776663 33 3333444333331110 0112245555555556656555555543
No 145
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.73 E-value=90 Score=31.14 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.3
Q ss_pred cchhhhhhHHHHHHHHHHHhccCC
Q 021318 256 LTEQHGTGLLLIAMGITLKLLPAD 279 (314)
Q Consensus 256 ~t~~~~iG~~lv~~Gv~ly~~~k~ 279 (314)
++..||+++.++++|+.+..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999887766543
No 146
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=23.45 E-value=63 Score=31.78 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=17.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 021318 19 RPKWQQFLICSSGFFFGYLVNGV 41 (314)
Q Consensus 19 ~~~~~~l~~~~~gi~~~~~~~~~ 41 (314)
+|+.++++.|++.||.+|+.-|+
T Consensus 411 lPkVlRFc~ca~mIYlGy~FCGW 433 (566)
T KOG3733|consen 411 LPKVLRFCCCAAMIYLGYCFCGW 433 (566)
T ss_pred hHHHHHHHHHHHHHHHHHhheee
Confidence 57777788888888887776664
No 147
>PF15325 MRI: Modulator of retrovirus infection
Probab=23.13 E-value=76 Score=24.58 Aligned_cols=15 Identities=40% Similarity=0.253 Sum_probs=10.5
Q ss_pred ccccccchhhhcccC
Q 021318 298 LSFSEREEADEEKRA 312 (314)
Q Consensus 298 ~~~~~~~~~~~~~~~ 312 (314)
.++..||+||.++-.
T Consensus 52 ssgs~Se~Ed~g~d~ 66 (106)
T PF15325_consen 52 SSGSSSEEEDSGNDA 66 (106)
T ss_pred CCCCccccccccccC
Confidence 457778888876654
No 148
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=1.5e+02 Score=28.00 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 92 ~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
++-.+-+.++.+..+..|..++++.-.-...++.+.+.++ .+++.++...+++++.+.|-++.++..
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~--~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLF--GDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhc--CCceechhhhHHHHHHhhhhhHHhhhh
Confidence 3444555677777777777777776633344455555555 467777777777777777766655543
No 149
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=22.09 E-value=51 Score=23.75 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=15.3
Q ss_pred CCcchhhhh--h----HHHHHHHHHHHhccCCCCCC
Q 021318 254 KPLTEQHGT--G----LLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 254 ~~~t~~~~i--G----~~lv~~Gv~ly~~~k~~~k~ 283 (314)
+.+++.||. | +++.+++.+...|.|.|+.+
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDR 61 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhh
Confidence 455554444 3 34455555555566655443
No 150
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=21.14 E-value=2.8e+02 Score=18.92 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhheeEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021318 142 EYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFT 194 (314)
Q Consensus 142 ~~lsl~li~~Gv~l~~~~~~~~~~~~~~~G~~l~l~s~~~~al~~v~q~~l~~ 194 (314)
..++..++++|+++..... -|...++++...-|......+|..+
T Consensus 5 ~v~G~~lv~~Gii~~~lPG---------pG~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG---------PGLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC---------CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4677888999998877654 2777777777766666666666554
No 151
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=21.10 E-value=6.5e+02 Score=23.12 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021318 169 MIGVIMISGALIMDSFLGNLQEAI 192 (314)
Q Consensus 169 ~~G~~l~l~s~~~~al~~v~q~~l 192 (314)
+.|.+...+..+...+.+.++.|.
T Consensus 101 Pva~Lg~~l~~~~~~~~s~~~h~a 124 (265)
T TIGR00822 101 PLAAAGQVLTIFVRTITVLFQHAA 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 152
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.08 E-value=50 Score=26.68 Aligned_cols=11 Identities=9% Similarity=-0.200 Sum_probs=3.8
Q ss_pred HHHhccCCCCC
Q 021318 272 TLKLLPADDKP 282 (314)
Q Consensus 272 ~ly~~~k~~~k 282 (314)
+.|...++|||
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 34444444444
Done!