Query 021318
Match_columns 314
No_of_seqs 206 out of 1336
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 4.1E-05 1.4E-09 59.8 7.2 68 91-160 37-105 (110)
2 2i68_A Protein EMRE; transmemb 97.6 0.00017 5.7E-09 58.5 7.1 42 237-278 64-105 (137)
3 2i68_A Protein EMRE; transmemb 97.5 7.7E-05 2.6E-09 60.6 4.2 68 91-160 37-105 (137)
4 3b5d_A Multidrug transporter E 97.1 0.0079 2.7E-07 46.6 11.9 42 237-278 64-105 (110)
5 3d9s_A Aquaporin-5, AQP-5; aqu 22.3 39 0.0013 29.7 2.1 23 257-279 204-227 (266)
6 4djk_A Probable glutamate/gamm 21.0 43 0.0015 31.5 2.3 21 261-281 449-469 (511)
7 2l2t_A Receptor tyrosine-prote 20.7 85 0.0029 19.7 2.9 12 266-277 25-36 (44)
8 2ks1_B Epidermal growth factor 15.8 1.3E+02 0.0044 18.8 2.9 7 270-276 30-36 (44)
9 2b6o_A Aquaporin-0, lens fiber 13.3 87 0.003 27.3 2.2 23 257-279 201-224 (263)
10 3l1l_A Arginine/agmatine antip 10.5 1.5E+02 0.005 27.0 2.9 23 260-282 410-432 (445)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.84 E-value=4.1e-05 Score=59.80 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHH-hhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~-ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
.+.+..+..+-..+++++|.+....+ .+..|+.++++++++ ++|+.++.+++++.+++.|+.+....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44577888889999999999887666 899999999999999 899999999999999999999877654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.56 E-value=0.00017 Score=58.55 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.8
Q ss_pred hhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 237 TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 237 ~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
..+.++++.++|+++|||++|+.+++|++++++|+++.+..+
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.49 E-value=7.7e-05 Score=60.56 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHH-hhcchHhHhhhhhhccccccccChhHHHHHHHHHHhhheeEecC
Q 021318 91 SAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (314)
Q Consensus 91 s~~~~~~~~~~n~aL~yvs~~~~~i~-ks~~pi~v~l~~~l~~gl~~r~s~~~~lsl~li~~Gv~l~~~~~ 160 (314)
.+++.++..+-+.++++++.+....+ .+..|+.++++++++ ++|+.++.+++++.++++||++....+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34577888899999999999876565 899999999999999 899999999999999999999876543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.12 E-value=0.0079 Score=46.59 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=38.8
Q ss_pred hhhhhHHHHhhhhhhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 021318 237 TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 278 (314)
Q Consensus 237 ~~~rki~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly~~~k 278 (314)
..+.++.+.++|+++|||++|+.+++|+.+++.|+.+-+..+
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999999999999987654
No 5
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=22.33 E-value=39 Score=29.72 Aligned_cols=23 Identities=9% Similarity=-0.148 Sum_probs=12.7
Q ss_pred chhhhhhHH-HHHHHHHHHhccCC
Q 021318 257 TEQHGTGLL-LIAMGITLKLLPAD 279 (314)
Q Consensus 257 t~~~~iG~~-lv~~Gv~ly~~~k~ 279 (314)
.|..|+|=. =.++|..+|.+...
T Consensus 204 ~Wvy~vgP~~Ga~la~~~y~~l~~ 227 (266)
T 3d9s_A 204 HWVFWVGPIVGAVLAAILYFYLLF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EeeeehHHHHHHHHHHHHHHHHhC
Confidence 355566643 34456667776543
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=21.04 E-value=43 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHhccCCCC
Q 021318 261 GTGLLLIAMGITLKLLPADDK 281 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~~~k~~~ 281 (314)
.++..+++.++.++.+.++++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~~~ 469 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVHDR 469 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555444433
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.69 E-value=85 Score=19.69 Aligned_cols=12 Identities=0% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHHHHHHHHhcc
Q 021318 266 LIAMGITLKLLP 277 (314)
Q Consensus 266 lv~~Gv~ly~~~ 277 (314)
++..++++|...
T Consensus 25 ii~~~~~~~~RR 36 (44)
T 2l2t_A 25 IVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333334444433
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.76 E-value=1.3e+02 Score=18.79 Aligned_cols=7 Identities=43% Similarity=0.515 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 021318 270 GITLKLL 276 (314)
Q Consensus 270 Gv~ly~~ 276 (314)
++++|..
T Consensus 30 ~~~~~~R 36 (44)
T 2ks1_B 30 GIGLFMR 36 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3334433
No 9
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=13.35 E-value=87 Score=27.33 Aligned_cols=23 Identities=13% Similarity=-0.181 Sum_probs=13.4
Q ss_pred chhhhhhHH-HHHHHHHHHhccCC
Q 021318 257 TEQHGTGLL-LIAMGITLKLLPAD 279 (314)
Q Consensus 257 t~~~~iG~~-lv~~Gv~ly~~~k~ 279 (314)
.|..|+|=. =.++|..+|.+...
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l~~ 224 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFLLF 224 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhC
Confidence 356677653 34456677776543
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.52 E-value=1.5e+02 Score=27.04 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHhccCCCCC
Q 021318 260 HGTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 260 ~~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
.+.|..++..|+.+|.+.+++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 45678888899988887765543
Done!