Query 021318
Match_columns 314
No_of_seqs 206 out of 1336
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 15:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021318.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021318hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 44.4 62 0.0045 26.5 10.0 17 135-151 83-99 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.2 3.3E+02 0.024 21.3 7.0 54 86-145 4-57 (248)
3 d1iwga8 f.35.1.1 (A:513-566,A: 7.1 1.4E+02 0.01 22.9 3.2 31 244-274 97-127 (222)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.6 5.4E+02 0.039 20.0 8.2 21 260-280 187-207 (447)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 6.5 88 0.0064 20.7 1.3 23 263-285 27-49 (91)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.1 1.6E+02 0.012 19.9 2.1 23 261-283 42-64 (107)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 4.7 1.3E+02 0.0095 20.0 1.4 22 261-282 36-57 (100)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.4 3.4E+02 0.025 16.0 2.5 25 255-280 39-63 (64)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 3.2 2.4E+02 0.018 13.9 1.2 15 261-275 2-16 (27)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 3.1 2E+02 0.015 21.5 1.3 32 243-274 78-109 (199)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=44.41 E-value=62 Score=26.53 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=10.4
Q ss_pred ccccChhHHHHHHHHHH
Q 021318 135 RRKYPAHEYVSALLLVV 151 (314)
Q Consensus 135 ~~r~s~~~~lsl~li~~ 151 (314)
-+|+.+++.+.+..+..
T Consensus 83 ~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHH
Confidence 47888887655444433
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.22 E-value=3.3e+02 Score=21.30 Aligned_cols=54 Identities=17% Similarity=-0.015 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcchHhHhhhhhhccccccccChhHHHH
Q 021318 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVS 145 (314)
Q Consensus 86 ~y~~~s~~~~~~~~~~n~aL~yvs~~~~~i~ks~~pi~v~l~~~l~~gl~~r~s~~~~ls 145 (314)
+|..++++..+..+.....+..=++....+ ..+.+.++.+++ +.||.-..||+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy--~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIF--ANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHH--SSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEE--EccCccceehhh
Confidence 456667766666665555555555444332 245566666777 667777777753
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=1.4e+02 Score=22.90 Aligned_cols=31 Identities=16% Similarity=-0.085 Sum_probs=21.8
Q ss_pred HHhhhhhhcCCCcchhhhhhHHHHHHHHHHH
Q 021318 244 TLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 244 sills~~~fg~~~t~~~~iG~~lv~~Gv~ly 274 (314)
..+.+..+.+.+++....+|..+.++...-+
T Consensus 97 ~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~ 127 (222)
T d1iwga8 97 GALLAATFRGLTNDVYFQVGLLTTIGLSAKN 127 (222)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhcccccchhhhhhhH
Confidence 3455677889999998888887765544433
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.62 E-value=5.4e+02 Score=20.03 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHhccCCC
Q 021318 260 HGTGLLLIAMGITLKLLPADD 280 (314)
Q Consensus 260 ~~iG~~lv~~Gv~ly~~~k~~ 280 (314)
...+...++.++..+...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS
T ss_pred hhhhhhHHHHHHHHHHhcccc
Confidence 344555556666666555433
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.46 E-value=88 Score=20.72 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhccCCCCCCCc
Q 021318 263 GLLLIAMGITLKLLPADDKPIKR 285 (314)
Q Consensus 263 G~~lv~~Gv~ly~~~k~~~k~~~ 285 (314)
.+.+...|..+|...|.|+++.+
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHHHhhheeeeccCCc
Confidence 34556778888888887765443
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.06 E-value=1.6e+02 Score=19.91 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCCC
Q 021318 261 GTGLLLIAMGITLKLLPADDKPI 283 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~~~k~~~k~ 283 (314)
..++.+...|+..|...|.|+++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 44455566777777776665443
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.71 E-value=1.3e+02 Score=20.03 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHhccCCCCC
Q 021318 261 GTGLLLIAMGITLKLLPADDKP 282 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~~~k~~~k 282 (314)
..++.++..|+..|...|+|++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 4455666677777777665544
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.41 E-value=3.4e+02 Score=16.04 Aligned_cols=25 Identities=0% Similarity=-0.077 Sum_probs=9.8
Q ss_pred CcchhhhhhHHHHHHHHHHHhccCCC
Q 021318 255 PLTEQHGTGLLLIAMGITLKLLPADD 280 (314)
Q Consensus 255 ~~t~~~~iG~~lv~~Gv~ly~~~k~~ 280 (314)
+......+|.. +..++.++.+.|+|
T Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~f~rk 63 (64)
T d2iuba2 39 KWGYPVVLAVM-GVIAVIMVVYFKKK 63 (64)
T ss_dssp ---CHHHHHHH-HHHHHHHHTTTTSC
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 33444444443 33444455555433
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.20 E-value=2.4e+02 Score=13.94 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHh
Q 021318 261 GTGLLLIAMGITLKL 275 (314)
Q Consensus 261 ~iG~~lv~~Gv~ly~ 275 (314)
.+|.+.+..|...|.
T Consensus 2 vlgli~~tl~glf~a 16 (27)
T d2e74g1 2 VLGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 356655555544444
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=2e+02 Score=21.45 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=21.6
Q ss_pred HHHhhhhhhcCCCcchhhhhhHHHHHHHHHHH
Q 021318 243 VTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 274 (314)
Q Consensus 243 ~sills~~~fg~~~t~~~~iG~~lv~~Gv~ly 274 (314)
........++|.+++.....+..+.++...-|
T Consensus 78 ~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 78 LGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 33444566788899888877777766665544
Done!