BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021319
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 22/307 (7%)
Query: 5 SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
S P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + +
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGT 121
GH + + W ++L+ +AS DKT+++WD SGKC + + S + P
Sbjct: 61 SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 292 AGDDKNK 298
A + +K
Sbjct: 296 AALENDK 302
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 30/321 (9%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 64 ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
+ P I G+ D+ + I DV+ K P H V+ + +N G + ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
G + S + L T++ + P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 285
T K E +FS T G +I S SED + I N+ T V ++ + S +P
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 286 YNLLAYAGDDKNK----YQAD 302
N++A A + +K Y++D
Sbjct: 294 ENIIASAALENDKTIKLYKSD 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 292 AGDDKNK 298
A + +K
Sbjct: 303 AALENDK 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 80
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 81 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
Query: 292 AGDDKNK 298
A + +K
Sbjct: 314 AALENDK 320
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 26/313 (8%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 64 ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
+ P I G+ D+ + I DV+ K P H V+ + +N G + ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
G + S + L T++ + P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 285
T K E +FS T G +I S SED + I N+ T V ++ + S +P
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 286 YNLLAYAGDDKNK 298
N++A A + +K
Sbjct: 294 ENIIASAALENDK 306
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 88 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
Query: 292 AGDDKNK 298
A + +K
Sbjct: 321 AALENDK 327
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 86 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 292 AGDDKNK 298
A + +K
Sbjct: 319 AALENDK 325
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 294 DDKNK 298
+ +K
Sbjct: 305 LENDK 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 69 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 292 AGDDKNK 298
A + +K
Sbjct: 302 AALENDK 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 292 AGDDKNK 298
A + +K
Sbjct: 303 AALENDK 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 60 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 294 DDKNK 298
+ +K
Sbjct: 295 LENDK 299
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 65 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 294 DDKNK 298
+ +K
Sbjct: 300 LENDK 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 294 DDKNK 298
+ +K
Sbjct: 299 LENDK 303
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 294 DDKNK 298
+ +K
Sbjct: 299 LENDK 303
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 22/311 (7%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LA+ S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYK 117
+ GH + + W ++L+ +AS DKT+++WD SGKC + + S +
Sbjct: 64 ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 118 PDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
P I G+ D+ + I DV+ K P H V+ + +N G + ++ +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGL 175
Query: 173 VEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT- 230
+ S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 231 -KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYN 287
K E +FS T G +I S SED + I N+ T V ++ + S +P N
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 288 LLAYAGDDKNK 298
++A A + +K
Sbjct: 296 IIASAALENDK 306
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 22/305 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 124 AVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 235
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 236 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 293
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 294 DDKNK 298
+ +K
Sbjct: 302 LENDK 306
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 26/307 (8%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 233
S + L T++ + P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 234 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 291
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 292 AGDDKNK 298
A + +K
Sbjct: 300 AALENDK 306
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V VA++ G +AS S D+T ++W+ +G++ L GH+ SV + + P
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVAFSPD- 68
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDDELTIL 135
IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD+ L
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKL 124
Query: 136 DVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
R + + V +A++ G+ + + TV++ + L T+ H++
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV 183
Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254
+ +A P G+ A S D V LW+ + L ++T T VR ++FS G IASAS+D
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 255 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
+ + N G+ + + +++N V + P +A A DDK
Sbjct: 243 KTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 144/288 (50%), Gaps = 18/288 (6%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V+ VA+ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 310
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD
Sbjct: 311 FSPD-GQTIASASDDKTVKLWN-RNGQHLQ--TLTGHSSSVWGVAFSPDGQTIASAS-DD 365
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 366 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 424
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
H++ + +A P + A S D V LW+ + L ++T T VR ++FS G IA
Sbjct: 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIA 483
Query: 250 SASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
SAS+D + + N G+ + + +++ V ++P +A A DDK
Sbjct: 484 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 143/288 (49%), Gaps = 18/288 (6%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 146
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD
Sbjct: 147 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASAS-DD 201
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 260
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249
H++ +A P G+ A S D V LW+ + L ++T T V ++FS G IA
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 250 SASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
SAS+D + + N G+ + + +++ V ++P +A A DDK
Sbjct: 320 SASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 57/289 (19%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H + TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRG 390
Query: 72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNR 128
+ + P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PD IA +
Sbjct: 391 VAFSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
D + + WN G++ L T+
Sbjct: 447 DKTVKL----------------------WNRNGQL--------------------LQTLT 464
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
H++ +A P G+ A S D V LW+ + L ++T T VR ++FS G I
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTI 523
Query: 249 ASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
ASAS+D + + N G+ + + +++ V ++P +A A DK
Sbjct: 524 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
AH++ +A P G+ A S D V LW+ + L ++T T V ++FS G I
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTI 72
Query: 249 ASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296
ASAS+D + + N G+ + + +++ V ++P +A A DDK
Sbjct: 73 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 33/287 (11%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH+ V V ++ + + S S D T +VW E + L+GH DSV + +D
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFD- 159
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTIL 135
L+A+ S D T++LWD + +C + N++ ++ P+G HI +RD + +
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 136 DVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
+V+ + E V + N G + + + TV V + + H
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 195 YCIAIDPMGRYFAV--------------------GSADSLVSLWDISEMLCVRTFTKLEW 234
CI+ P Y ++ GS D + +WD+S +C+ T +
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVE 281
VR + F G +I S ++D + + + R C +N+ E
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR------CMKTLNAHE 380
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 27/268 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH V ++++ +G LAS S D T ++W + G ++ + GH +V +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRT--MHGHDHNVSSVS 199
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY-KPDGTHIAVGNRDDEL 132
P + D I +AS DKT+++W+ ++G C + E + + DGT IA + D +
Sbjct: 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 133 TILDV-RKFKPIHRRKFGYEVNEIAW----------NMTGEMF--------FLTTG--NG 171
+ V K R+ + V I+W TG FL +G +
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231
T+++ + L T+V H + G++ + D + +WD C++T
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 232 LEWPVRTISFSHTGDYIASASEDLFIDI 259
E V ++ F T Y+ + S D + +
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 46/253 (18%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
L GH V ++ + P + ++ +AS D T+++WD +G D
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG-------------------DFE 143
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
G+ D V +I+++ +G++ + + T+++ +
Sbjct: 144 RTLKGHTDS---------------------VQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTIS 240
+ T+ H ++I P G + S D + +W++ CV+TFT EW VR +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVR 241
Query: 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPK--YNLLAYAGDDKN 297
+ G IAS S D + + V T ++ R + + W P+ Y+ ++ A +
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 298 KYQADEGVFRIYG 310
K G F + G
Sbjct: 302 KKSGKPGPFLLSG 314
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +TGH++ V V N GT +AS S DQT RVW + K ELR H V+ +
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT----KECKAELREHRHVVECIS 283
Query: 74 WDPKHA-DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
W P+ + I+ A+G +T +SGK G + G+RD +
Sbjct: 284 WAPESSYSSISEATGSET-----KKSGK------------------PGPFLLSGSRDKTI 320
Query: 133 TILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
+ DV + G++ V + ++ G+ + T+ V Y + R + T+ AH
Sbjct: 321 KMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ Y GS D V +W+
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V V ++ G + S + D+T RVW + K L H V L + K
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHEHFVTSLDFH-K 390
Query: 78 HADLIATASGDKTVRLWDAR 97
A + T S D+TV++W+ R
Sbjct: 391 TAPYVVTGSVDQTVKVWECR 410
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 59/307 (19%)
Query: 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
+NL++ + SV ++ G LA+G+ D+ R+W IE + K+ I L+GH
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
+ L + P D + + SGD+TVR+WD R+G+CS + + P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
D + + D E FL VE L + ++
Sbjct: 227 LDRAVRVWD------------------------SETGFL------VERLDSEN----ESG 252
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM------------LCVRTFTKLEWP 235
H Y + G+ GS D V LW++ C T+ +
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTV-------HQIPCRAAMNSVEWNPKYNL 288
V +++ + +YI S S+D + + +G + + + A N P+YN+
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 289 LAYAGDD 295
A D
Sbjct: 373 FATGSGD 379
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
+S P Y GHK V SVA + SGS D+ W + G+ + L
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD-KKSGNPL---LML 348
Query: 63 RGHADSVDQLC------WDPKHADLIATASGDKTVRLW 94
+GH +SV + P++ ++ AT SGD R+W
Sbjct: 349 QGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIW 385
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 51/331 (15%)
Query: 15 EYTGHKKKVHSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRG 64
+ TGH+ V S+A C T TK+ S S D+T W P H + D L G
Sbjct: 8 QLTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGT 121
H+ V + + + +AS D ++RLW+ ++G+C Q + G +++ + PD
Sbjct: 66 HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNR 122
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTG--NGTVEVL 176
I G RD+ L + +V K + +H G V+ + ++ + + + +G + V+V
Sbjct: 123 QIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 236
+ R + + HT + + P G A D + LWD+++ + P+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PI 240
Query: 237 RTISFSHTGDYIASASE-----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285
I FS ++ +A+E D+ ++++ H G S + P+
Sbjct: 241 NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQG-------------SKKIVPE 287
Query: 286 YNLLAYAGDDKNKYQA-DEGVFRIYGF-ENA 314
+A++ D Y + V R++G ENA
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 94/264 (35%), Gaps = 57/264 (21%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-------GHGK------- 56
L R GH V VA + G S S D + R+W+++ GH K
Sbjct: 58 LPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 57 ----------VKDIELR---------------GHADSVDQLCWDPK-HADLIATASGDKT 90
+D LR H D V + + P A +I + D
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 91 VRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147
V++WD +G+ +L G ++T PDG+ A ++D + D+ K + +
Sbjct: 178 VKVWDLATGRL--VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 148 FGYEVNEIAWNMTGEMFFLTTGNGT---------VEVLTYPSLRPLDTVVAHTAGCYCIA 198
G +N+I ++ T G + V P + +V C IA
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE---CVSIA 292
Query: 199 IDPMGRYFAVGSADSLVSLWDISE 222
G G D+++ +W +SE
Sbjct: 293 WSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 34/307 (11%)
Query: 35 LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
L SGS D+T +W + E +G+ + L GH V L ++ I++ S DKT+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92 RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRK 147
RLWD R+G ++ E ++ + PD I + E+ + ++ KF +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 148 FGYEVNEIAWNMTGEM---------FFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
V+ + ++ + +F + G +G ++V + + T AH + +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219
Query: 198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----PVRTISFSHTGDYIASASE 253
+I P G+Y A G D + +WDI + T+ + E+ + I+F+ ++A +
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNL----TYPQREFDAGSTINQIAFNPKLQWVAVGT- 274
Query: 254 DLFIDISNVHTGR-----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFR 307
D + I N+ T T+ P A NP+ LA+ K + +GV R
Sbjct: 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334
Query: 308 IYGFENA 314
+ FE +
Sbjct: 335 TFSFETS 341
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GH+ +V+SVA++ ++ S ++ ++W+I G K E H+D V +
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVR 169
Query: 74 WDP---------KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
+ P A A+ D +++W+ + + + N+N ++ P+G +I
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYI 228
Query: 124 AVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT-VEVLTYPSL 181
A G +D +L I D+ P G +N+IA+N + + T G + L S
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288
Query: 182 RPLDTVVAH-----------TAGCYCIAIDPMGRYFAVGSADSLV 215
P+ T+ A C +A + +G+ G D ++
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQ--LCW 74
GH+ V SV + T AS S+D R+W +E +GK +K I+ A VD L +
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---NGKQIKSID----AGPVDAWTLAF 130
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
P + +AT + V ++ SGK + G+ I +I Y PDG ++A G D +
Sbjct: 131 SPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
I D+ K +H + + + ++ ++ + +G +++ T+ H +
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252
+A P +F S+D V +WD+ CV TF + V + ++ G I S
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Query: 253 EDLFIDI 259
+D I I
Sbjct: 310 DDQEIHI 316
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 63 RGHADSVDQLCW---DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD 119
+ H D++ + W ++++ + T S D V++W R + Q L G + + D
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVD 87
Query: 120 GTHI----AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--GTV 173
+H A + D + + D+ K I G V+ + + +L TG G V
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
+ S + ++ IA P G+Y A G+ D +++++DI+ + T
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 234 WPVRTISFSHTGDYIASASEDLFIDISNVH 263
P+R+++FS + +AS+D +I I +V
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 283
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
+ SV ++ LL DD N
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFN 304
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 147 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 201
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 202 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 261 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 317 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Query: 62 LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
L+GH + V LC D K I ++S D V +WD+ + + + Y P
Sbjct: 60 LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMT-GEMFFLT-TGNGT 172
G IA G D++ ++ D + ++ N + A + T +M LT +G+GT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFT 230
+ S + L + H A C+ + P G F G D +WD+ CV+ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
E V ++ + +GD AS S+D + ++ R V
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90
TG SG D+ A VW + G+ H V+ + + P D A+ S D T
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRS---GQCVQ-AFETHESDVNSVRYYPS-GDAFASGSDDAT 263
Query: 91 VRLWDARSGKCSQQAELSGENI-----NITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145
RL+D R+ + + A S E+I ++ + G + G D + + DV K +
Sbjct: 264 CRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 146 RKFGYE 151
FG+E
Sbjct: 322 L-FGHE 326
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
GH+ +V ++ + GT SGS D T RVW
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 14/261 (5%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 276
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 277 MNSVEWNPKYNLLAYAGDDKN 297
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 350
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 351 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 373
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245
HT+ + + P G A +AD + LW E+ R + + S H G
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 195 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
P GR+ A G D+LV++W + + ++TFT+ + V+ +++ + + +
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 310
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
D I I NV +G + + + + S+ W+P Y L
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 213
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRK 139
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 214 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272
Query: 140 ----FKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGT----VEVLTYPSLRPLDTVVAH 190
+ P+ + V +AW + L TG GT + + S L V AH
Sbjct: 273 GEGGWVPLQTFTQHQGAVKAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 191 TAGCYCIAIDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
+ C I P + G A + + +W M V V +++ S G +
Sbjct: 332 SQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 249 ASASED 254
ASA+ D
Sbjct: 391 ASAAAD 396
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMGRYFA 207
Y +N + W+ +G + + N +V + + S L + G Y +A G Y A
Sbjct: 117 YYLNLVDWS-SGNVLAVALDN-SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 174
Query: 208 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267
VG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 175 VGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE- 231
Query: 268 VHQIPCRAAMNS----VEWNPKYNLLAYAGDD 295
H + + + + W P LA G+D
Sbjct: 232 -HHVATLSGHSQEVCGLRWAPDGRHLASGGND 262
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 125/321 (38%), Gaps = 44/321 (13%)
Query: 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIAT 84
+AWN GT LAS D+ R+W E G + K + GH +V ++ W P + +A+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS 78
Query: 85 ASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
AS D T +W L G E ++ + P G +A +RD + + +V +
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 142 PIH----RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCY 195
+V + W+ + E+ + + TV++ T+ H + +
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 196 CIAIDPMGRYFAVGSADSLVSLW----------------DIS-EMLCV------RTFTKL 232
+A DP G+ A S D V +W D S + +C RT +
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258
Query: 233 EWPVRT--ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPKY-NL 288
W T ++ + D I ED D T H + +N V WNPK L
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 289 LAYAGDDKN----KYQADEGV 305
LA DD KYQ EG+
Sbjct: 319 LASCSDDGEVAFWKYQRPEGL 339
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH+ +V SVAW +G LA+ S D++ VW ++ + + L H V + W P
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPS 161
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTI 134
+L+A+AS D TV+L+ A L G ++ + P G +A + D+ T+
Sbjct: 162 Q-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS--DDRTV 218
Query: 135 LDVRKFKPIHRRKFGYEVNEIAW 157
R++ P + + ++ +W
Sbjct: 219 RIWRQYLPGNEQGVACSGSDPSW 241
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLC 73
H + ++ +AW LA+ D RV+ +P+ + L + H+ V+ +
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 74 WDPKHADLIATASGDKTVRLW 94
W+PK L+A+ S D V W
Sbjct: 311 WNPKEPGLLASCSDDGEVAFW 331
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 180 SLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EMLCVRTFTK-LEWP 235
SL L V AH + C+ +A +P G A D + +W +C ++ +
Sbjct: 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT 63
Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM-------NSVEWNPKYNL 288
VR +++S G+Y+ASAS D + + C + SV W P NL
Sbjct: 64 VRKVAWSPCGNYLASAS----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 289 LAYAGDDKNKY 299
LA DK+ +
Sbjct: 120 LATCSRDKSVW 130
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 339
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 340 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 362
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245
HT+ + + P G A +AD + LW E+ R + + S H G
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 184 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
P GR+ A G D+LV++W + + ++TFT+ + V+ +++ + + +
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
D I I NV +G + + + + S+ W+P Y L
Sbjct: 300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 202
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRK 139
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 203 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Query: 140 ----FKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGT----VEVLTYPSLRPLDTVVAH 190
+ P+ + V +AW + L TG GT + + S L V AH
Sbjct: 262 GEGGWVPLQTFTQHQGAVKAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 191 TAGCYCIAIDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
+ C I P + G A + + +W M V V +++ S G +
Sbjct: 321 SQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 249 ASASED 254
ASA+ D
Sbjct: 380 ASAAAD 385
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMGRYFA 207
Y +N + W+ +G + + N +V + + S L + G Y +A G Y A
Sbjct: 106 YYLNLVDWS-SGNVLAVALDN-SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 163
Query: 208 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267
VG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 164 VGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE- 220
Query: 268 VHQIPCRAAMNS----VEWNPKYNLLAYAGDD 295
H + + + + W P LA G+D
Sbjct: 221 -HHVATLSGHSQEVCGLRWAPDGRHLASGGND 251
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 259
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 260 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 282
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
HT+ + + P G A +AD + LW E+
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 18/216 (8%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 104 NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASE 253
P GR+ A G D+LV++W + + ++TFT+ + V+ +++ + + +
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219
Query: 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289
D I I NV +G + + + + S+ W+P Y L
Sbjct: 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 122
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRK 139
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 123 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Query: 140 ----FKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGT----VEVLTYPSLRPLDTVVAH 190
+ P+ + V +AW + L TG GT + + S L V AH
Sbjct: 182 GEGGWVPLQTFTQHQGAVKAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 191 TAGCYCIAIDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 248
+ C I P + G A + + +W M V V +++ S G +
Sbjct: 241 SQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 249 ASASED 254
ASA+ D
Sbjct: 300 ASAAAD 305
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 203 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262
G Y AVG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDV 136
Query: 263 HTGRTVHQIPCRAAMNS----VEWNPKYNLLAYAGDDK 296
H + + + + W P LA G+D
Sbjct: 137 RVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW-----DARSGKCSQQAELSGENI-NIT 115
L GH V L +L+ +AS DKT+ W D + G + + + + T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTV 173
DG + + D L + DV + ++R G++ + ++ ++ + + +G + T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCVR 227
+V T + L T++ H + + P + + SA D +V W++++
Sbjct: 132 KVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 288 LLAYA 292
LA A
Sbjct: 251 WLAAA 255
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 16/225 (7%)
Query: 13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
SR TGHK S + T+L +GS DQT +W + + E GH V
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71 QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
L + +A++ + S D TVRLWD R S G+ ++ + PDG G+
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNGTVEV---LT 177
D + D+R ++ R+ NE +A++++G + F NG V L
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 178 YPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ L T+ +H C+ + G GS D + +W S
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDG 120
L+GH+ V L W P+ + I +AS D + +W+A + + + +L + + P+G
Sbjct: 62 LQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 121 THIAVGNRDDELTILDVRKFK------PIHRRKFGYEVNEIAWN-MTGEMFFLTTGNGTV 173
+A G D +I ++ P+ R G++ + + + L TG+G
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 174 EVLTYP-------SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EML 224
+ + S+ + HTA ++I+ + F GS D+ V LWD+
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 225 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 271
VRT+ E + ++ F G + S+D + ++ TG HQ+
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQL 284
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 266
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 267 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW-----DARSGKCSQQAELSGENI-NIT 115
L GH V L +L+ +AS DKT+ W D + G + + + + T
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTV 173
DG + + D L + DV + ++R G++ + ++ ++ + + +G + T+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCVR 227
+V T + L T++ H + + P + + SA D +V W++++
Sbjct: 126 KVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 185 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 244
Query: 288 LLAYA 292
LA A
Sbjct: 245 WLAAA 249
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW-----DARSGKCSQQAELSGENI-NIT 115
L GH V L +L+ +AS DKT+ W D + G + + + + T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTV 173
DG + + D L + DV + ++R G++ + ++ ++ + + +G + T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCVR 227
+V T + L T++ H + + P + + SA D +V W++++
Sbjct: 132 KVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 288 LLAYA 292
LA A
Sbjct: 251 WLAAA 255
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW-----DARSGKCSQQAELSGENI-NIT 115
L GH V L +L+ +AS DKT+ W D + G + + + + T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTV 173
DG + + D L + DV + ++R G++ + ++ ++ + + +G + T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCVR 227
+V T + L T++ H + + P + + SA D +V W++++
Sbjct: 132 KVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 288 LLAYA 292
LA A
Sbjct: 251 WLAAA 255
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLW 218
+ AG Y A +P G+ G D+++ +W
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW-----DARSGKCSQQAELSGENI-NIT 115
L GH V L +L+ +AS DKT+ W D + G + + + + T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTV 173
DG + + D L + DV + ++R G++ + ++ ++ + + +G + T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCVR 227
+V T + L T++ H + + P + + SA D +V W++++
Sbjct: 132 KVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 288 LLAYA 292
LA A
Sbjct: 251 WLAAA 255
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K + EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 98/263 (37%), Gaps = 45/263 (17%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ ++ ++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVG 209
W + G+ G+ +V P+ + D +V +AG
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN--------------- 174
Query: 210 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269
D V W++++ F + T++ S G IASA +D I + N+ + +
Sbjct: 175 --DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXY 232
Query: 270 QIPCRAAMNSVEWNPKYNLLAYA 292
+ + + S+ ++P LA A
Sbjct: 233 TLSAQDEVFSLAFSPNRYWLAAA 255
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 149 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 207
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 208 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 237
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 238 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
+ A GSAD V+LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 16 YTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
+TGH V VAW+ L S + DQ +W + K + H V+ L +
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSF 289
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDDE 131
+P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 132 LTILDVRKF 140
L + D+ K
Sbjct: 350 LHVWDLSKI 358
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 318 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 147 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 205
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 206 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 235
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 236 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
+ A GSAD V+LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 229 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 286
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 287 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 347 RLHVWDLSKI 356
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 316 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 204 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 233
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 234 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 205 Y-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 254
+ A GSAD V+LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 227 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 284
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 345 RLHVWDLSKI 354
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 314 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 16/238 (6%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
+ +H R T K V+ + ++ K+ SG D T ++W ++ L GH
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN 127
SV L +D + +I T S D TVR+WD +G+ E + + + + + +
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCS 230
Query: 128 RDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D + + D+ I R+ G+ + + +G+ T++V + +
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 186 TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 243
T+ H G C+ R GS+D+ + LWDI C+R E VR I F +
Sbjct: 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH+ V+ V ++ + S S D+T +VW+ + L GH + L
Sbjct: 250 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT----LNGHKRGIACLQ 303
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + L+ + S D T+RLWD G C + E E + + D I G D ++
Sbjct: 304 YRDR---LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIK 359
Query: 134 ILDV 137
+ D+
Sbjct: 360 VWDL 363
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--------NGTVEVLTYPSLR 182
+ + D+ + K ++ G +N + ++ TG G + V
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ A C +A G+ G D+LV +W ++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAELSGEN---INIT 115
L+GH V Q+ P+ D+I +AS DKT+ +W + + Q L G + ++
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
DG G+ D L + D+ RR G+ + ++ + + + +G+ +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 176 LTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFT 230
+ +L V +H+ C+ P + S D LV +W+++
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLL 289
+ T++ S G AS +D + +++ G+ ++ + +N++ ++P +Y L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 290 AYAG 293
A G
Sbjct: 273 AATG 276
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 98 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--------NGTVEVLTYPSLR 182
+ + D+ + K ++ G +N + ++ TG G + V
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ A C +A G+ G D+LV +W ++
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAELSGEN---INIT 115
L+GH V Q+ P+ D+I +AS DKT+ +W + + Q L G + ++
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
DG G+ D L + D+ RR G+ + ++ + + + +G+ +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 176 LTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFT 230
+ +L V +H+ C+ P + S D LV +W+++
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 231 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLL 289
+ T++ S G AS +D + +++ G+ ++ + +N++ ++P +Y L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 290 AYAG 293
A G
Sbjct: 250 AATG 253
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 134/308 (43%), Gaps = 63/308 (20%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
T H+ +H + GT+LA+ S D++ +++ + G + D LRGH V Q+ W
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
P + +++A+ S D+ V +W +G + E +G + ++ + P G +A G+ D
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTIL--------DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
+++L +V+K H N ++W P++
Sbjct: 128 AISLLTYTGEGQWEVKKINNAHT----IGCNAVSW--------------------APAVV 163
Query: 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----WPVRT 238
P +++ H +G I + FA G D+L+ LW E + KLE W VR
Sbjct: 164 P-GSLIDHPSGQKPNYI----KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-VRD 217
Query: 239 ISFSHT----GDYIASASEDLFIDI-------SNVHTGRTVHQIPCRAAMNSVEWNPKYN 287
++++ + IAS S+D + I SN + + +H+ + V W+ N
Sbjct: 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITAN 275
Query: 288 LLAYAGDD 295
+LA +G D
Sbjct: 276 ILAVSGGD 283
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 25/227 (11%)
Query: 13 SREYTGHKKKVHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
S E+ GH V+SV W + G LA GS D + G +VK I H +
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIGCN 154
Query: 71 QLCWDPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128
+ W P LI SG K + SG C +L E + +K + A +
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIA-WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
+ DV + P G + IA + G +F T + + + L + V
Sbjct: 215 -----VRDV-AWAP----SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV 264
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTK 231
V H ++ AV D+ V+LW S + +C+ K
Sbjct: 265 VWH------VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211
+ ++ +N G++ F + + + V + L T+ HT + I +D +Y GSA
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 212 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-----IDISNVHTGR 266
D + LWD+S CV T+ K PV+ + FS G+Y + +++ I+I +
Sbjct: 95 DYSIKLWDVSNGQCVATW-KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153
Query: 267 TVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295
H+ + V P + ++ + G D
Sbjct: 154 ATHE------LTKVSEEPIHKIITHEGLD 176
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 47/313 (15%)
Query: 8 FKNLHSR--EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRG 64
F+ H + + TGH++ + V +N G L S S D +A VW+ + G L G
Sbjct: 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDG 72
Query: 65 HAD---SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
H S+D C+ T S D +++LWD +G+C + + + P G
Sbjct: 73 HTGTIWSIDVDCF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN 128
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
+ L ILD + + + EI + LT S
Sbjct: 129 YF--------LAILD-----NVMKNPGSINIYEIER------------DSATHELTKVSE 163
Query: 182 RPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRT 238
P+ ++ H G+Y G D +S +D+S V + E +
Sbjct: 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223
Query: 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK 298
+ FS Y ++S D + +V T + + + +N+ P + G + K
Sbjct: 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAK 283
Query: 299 ----YQADEGVFR 307
A+EG F
Sbjct: 284 DVTTTSANEGKFE 296
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-- 170
++ + PD T+ +RD ++DV + + + + +N E L G
Sbjct: 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEA 282
Query: 171 ----------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
G E Y + + V H +AI P G +A G D + L
Sbjct: 283 KDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 37/318 (11%)
Query: 5 SIPFKNLHSRE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
++P +L E YT H + + +G ASG V R+W H + +
Sbjct: 43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIP 100
Query: 64 GHADSVDQLCWDPKHADLIATASGDKT---VRLWDARSGKCSQQAELSGENINITYKPDG 120
+ V + WD + + A G + V L+D + + + N ++ +KP
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSR 159
Query: 121 T-HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I + FK + FG V+ + +N G +F T G+GT+ +
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 177 -----TYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
T + D++ VAH+ + + P G A SAD + +W+++ + +T
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 230 ---TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW--NP 284
T++E + + T + S S + FI+ N P +++ V + N
Sbjct: 278 PVGTRIE--DQQLGIIWTKQALVSISANGFINFVN----------PELGSIDQVRYGHNK 325
Query: 285 KYNLLAYAGDDKNKYQAD 302
L+ + D K + AD
Sbjct: 326 AITALSSSADGKTLFSAD 343
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI-EPHGHGKVKDIELRG-H 65
F+ H+ +T H KV V+W+ +LA+GS+D + VW++ +P H I ++G H
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAH 579
Query: 66 A-DSVDQLCWDPKHADLIATASGDKTVRLWD 95
A SV+ + W + I +A D ++ W+
Sbjct: 580 AMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 170 NGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LC 225
NGT V T P SL + H+ P G Y A G V +WD ++ +
Sbjct: 37 NGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95
Query: 226 VRTFTKLEWPVRTISFSHTGDYIASASE--DLFIDISNVHTGRTVHQIPCRA-AMNSVEW 282
T PV+ IS+ IA+ E + F + TG + + +A AMNSV++
Sbjct: 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 155
Query: 283 NPKYNLLAYAGDDKNKYQADEG 304
P +G D N EG
Sbjct: 156 KPSRPFRIISGSDDNTVAIFEG 177
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 119 DGTHIAVGNRDDELTI--LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
D +AVG +D ++ + L + E+ +A++ G FL + + +V+
Sbjct: 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA--FLVATDQSRKVI 516
Query: 177 TYP-----SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
Y L ++ HTA C++ P A GS D+ V +W++++
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 99/263 (37%), Gaps = 56/263 (21%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V + C G ++ SGS D T +VW GK L GH V W +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLRT-LVGHTGGV----WSSQ 166
Query: 78 HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
D +I + S D+T+++W+A +G+C + + + + G+RD L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC 196
+ + +H ++ H A C
Sbjct: 226 IETGQCLH-----------------------------------------VLMGHVAAVRC 244
Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256
+ D GR G+ D +V +WD C+ T V ++ F G ++ S S D
Sbjct: 245 VQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTS 300
Query: 257 IDISNVHTGRTVHQIPCRAAMNS 279
I + +V TG +H + ++ S
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTS 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
LH+ + GH +V+S+ ++ G + SGS+D + RVW +E L GH
Sbjct: 272 LHTLQ--GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHT----LTGHQSLTS 323
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111
+ +++ + + D TV++WD ++G+C Q L G N
Sbjct: 324 GM---ELKDNILVSGNADSTVKIWDIKTGQCLQ--TLQGPN 359
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 44/264 (16%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPK 77
H V V W+ G+K+ + S D+TA++W + + + I++ H V + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAP 139
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAEL-----------------SGENINITYKPDG 120
+ + T S DKT++ WD RS +L + E I Y+
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ--- 196
Query: 121 THIAVGNRDDELTILD---------VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171
+ N+ E ++ V FK + G+ + I + + ++ N
Sbjct: 197 ----LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA--IHYINPPNP 250
Query: 172 TVEVLTYPSLRPLDTVVAHTAGCYC---IAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T+ R T + Y IA P+ A +D S WD ++T
Sbjct: 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
Query: 229 FTKLEWPVRTISFSHTGDYIASAS 252
+L+ P+ F+H G+ A AS
Sbjct: 311 SEQLDQPISACCFNHNGNIFAYAS 334
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
G L +GS R W ++ G K ++ H V +CW + TAS DKT
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWS-DDGSKVFTASCDKTA 110
Query: 92 RLWDARSGKCSQ--QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG 149
++WD S + Q Q + + I+ P+ + + G+ D L D R P+ +
Sbjct: 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170
Query: 150 YE--VNEIAWNMTGEMFFLTTGNGTV--EVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGR 204
++ + M T G + ++ PS R +++ + H C I D +
Sbjct: 171 ERCYCADVIYPMA---VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227
Query: 205 Y--FAVGSADSLVSL 217
FA+GS + V++
Sbjct: 228 PTGFALGSIEGRVAI 242
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 40/208 (19%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
E I+D + H V ++AW++ E F + + ++
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLMIWD 258
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
+ + +P V AHTA C++ +P + A GSAD V+LWD+ + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
+ + + +S H +AS+ D +++
Sbjct: 319 KDEIFQVHWSPHNETILASSGTDRRLNV 346
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 343 RLNVWDLSKI 352
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+T +W + + K+K H D + Q+ W P + ++A++ D+ + +W
Sbjct: 291 LATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 95 DARSGKCSQQAE 106
D Q AE
Sbjct: 348 DLSKIGEEQSAE 359
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 16 YTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE---------LRG 64
+ HK ++ V W+ T LAS D+ VW + G + +D E G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLW 94
H + W+P +I + S D +++W
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 40/208 (19%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV----E 174
E I+D + H V ++AW++ E F + + +
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLXIWD 258
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
+ + +P V AHTA C++ +P + A GSAD V+LWD+ + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
+ + + +S H +AS+ D +++
Sbjct: 319 KDEIFQVHWSPHNETILASSGTDRRLNV 346
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 343 RLNVWDLSKI 352
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+T +W + + K+K H D + Q+ W P + ++A++ D+ + +W
Sbjct: 291 LATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 95 DARSGKCSQQAE 106
D Q AE
Sbjct: 348 DLSKIGEEQSAE 359
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 16 YTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE---------LRG 64
+ HK ++ V W+ T LAS D+ VW + G + +D E G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLW 94
H + W+P +I + S D ++W
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E K ++++ H D
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 665
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 666 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
A G+ D L + D+ + K FG+ VN ++ E+ + +GT+ +
Sbjct: 724 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 44 ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
+W+I+ ++K + RGH V + + P + + TAS D+T+R+W+ + C
Sbjct: 871 VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 924
Query: 104 QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163
A + + I++ ++ + T + L + ++R + I + TG++
Sbjct: 925 SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGK-------------TGQI 963
Query: 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
+L A C + P Y A G D + + ++
Sbjct: 964 DYLPE-----------------------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Query: 224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
+ + VR I F+ G + S+SED I + N TG V
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 54/314 (17%)
Query: 1 MGESSIPFKNLHSR----EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK 56
+ + + N+ SR + GH VH V ++ G+ + S DQT RVW E K
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 923
Query: 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116
I L+ D V Q ++ ++ + ++L ++G+ E ++
Sbjct: 924 NSAIVLKQEIDVVFQ-----ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS- 977
Query: 117 KPDGTHIAVGNRDDELTILDV---RKF-------KPIHRRKFGYEVNEI----------A 156
P ++A G+ D + I+++ R F K + +F + +
Sbjct: 978 -PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Query: 157 WN-MTGEMFFLT--------------------TGNGTVEVLTYPSLRPLDTVVAHTAGCY 195
WN TG+ FL + +GTV+V + R H
Sbjct: 1037 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1096
Query: 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 255
AI F+ SAD +W + + VR +FS G +A+ ++
Sbjct: 1097 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1156
Query: 256 FIDISNVHTGRTVH 269
I I NV G+ +H
Sbjct: 1157 EIRIWNVSDGQLLH 1170
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 23/155 (14%)
Query: 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T++V + L + AH C A Y A SAD V +WD + V T
Sbjct: 642 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 701
Query: 229 FTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIPCRAAM-------NS 279
+ + V F++ ++ +A+ S D F+ + + ++Q CR M N
Sbjct: 702 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD------LNQKECRNTMFGHTNSVNH 755
Query: 280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 314
++P LLA D G R++ +A
Sbjct: 756 CRFSPDDELLASCSAD--------GTLRLWDVRSA 782
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D ++W + + K + GH +SV+ + P +L+A+ S D T+RLW
Sbjct: 723 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLW 777
Query: 95 DARSGKCSQ---------QAELSGENINITYK-----PDGTHIAVGNRDDELTILDVRKF 140
D RS + +E E++ + K DG I V ++ L + D+
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTS 836
Query: 141 KPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
+ G+ + ++ + + VE+ S + H + + +
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 199 IDPMGRYFAVGSADSLVSLWDISEM 223
P G F S D + +W+ ++
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV 921
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E K ++++ H D
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 658
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 659 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
A G+ D L + D+ + K FG+ VN ++ E+ + +GT+ +
Sbjct: 717 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 44 ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
+W+I+ ++K + RGH V + + P + + TAS D+T+R+W+ + C
Sbjct: 864 VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 917
Query: 104 QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163
A + + I++ ++ + T + L + ++R + I + TG++
Sbjct: 918 SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGK-------------TGQI 956
Query: 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
+L A C + P Y A G D + + ++
Sbjct: 957 DYLPE-----------------------AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Query: 224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
+ + VR I F+ G + S+SED I + N TG V
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 54/314 (17%)
Query: 1 MGESSIPFKNLHSR----EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK 56
+ + + N+ SR + GH VH V ++ G+ + S DQT RVW E K
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 916
Query: 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116
I L+ D V Q ++ ++ + ++L ++G+ E ++
Sbjct: 917 NSAIVLKQEIDVVFQ-----ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS- 970
Query: 117 KPDGTHIAVGNRDDELTILDV---RKF-------KPIHRRKFGYEVNEI----------A 156
P ++A G+ D + I+++ R F K + +F + +
Sbjct: 971 -PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Query: 157 WN-MTGEMFFLT--------------------TGNGTVEVLTYPSLRPLDTVVAHTAGCY 195
WN TG+ FL + +GTV+V + R H
Sbjct: 1030 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089
Query: 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 255
AI F+ SAD +W + + VR +FS G +A+ ++
Sbjct: 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149
Query: 256 FIDISNVHTGRTVH 269
I I NV G+ +H
Sbjct: 1150 EIRIWNVSDGQLLH 1163
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 23/155 (14%)
Query: 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T++V + L + AH C A Y A SAD V +WD + V T
Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694
Query: 229 FTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIPCRAAM-------NS 279
+ + V F++ ++ +A+ S D F+ + + ++Q CR M N
Sbjct: 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD------LNQKECRNTMFGHTNSVNH 748
Query: 280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 314
++P LLA D G R++ +A
Sbjct: 749 CRFSPDDELLASCSAD--------GTLRLWDVRSA 775
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D ++W + + K + GH +SV+ + P +L+A+ S D T+RLW
Sbjct: 716 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLW 770
Query: 95 DARSGKCSQ---------QAELSGENINITYK-----PDGTHIAVGNRDDELTILDVRKF 140
D RS + +E E++ + K DG I V ++ L + D+
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTS 829
Query: 141 KPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
+ G+ + ++ + + VE+ S + H + + +
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 199 IDPMGRYFAVGSADSLVSLWDISEM 223
P G F S D + +W+ ++
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV 914
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
+ +R + GH K V SVA++ ++ S S D+T ++W+ G K E GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
+ + P I +AS DKTV++W+ + C ++ L+G + PDG+ A
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
G +D + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 40/209 (19%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R TGH V V + G SGS D R+W + V GH V +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTRRFVGHTKDVLSVA 479
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + ++ +AS D+T++LW+ G+C GE G+RD
Sbjct: 480 FSLDNRQIV-SASRDRTIKLWNTL-GECKYTISEGGE---------------GHRD---- 518
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
+ +F P N + + TV+V + + T+ HT
Sbjct: 519 WVSCVRFSP---------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISE 222
+A+ P G A G D +V LWD++E
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 203 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 261
G++ GS D + LWD++ + R F V +++FS I SAS D I + N
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 40/208 (19%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+P + + +AS D T+ LWD I+ P
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWD------------------ISAVP 211
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
E ++D + H V +++W++ E F + + ++
Sbjct: 212 -----------KEGKVVDAKTIFTGHTAV----VEDVSWHLLHESLFGSVADDQKLMIWD 256
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232
+ + +P +V AHTA C++ +P + A GSAD V+LWD+ + L + +F
Sbjct: 257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
Query: 233 EWPVRTISFS-HTGDYIASASEDLFIDI 259
+ + + +S H +AS+ D +++
Sbjct: 317 KDEIFQVQWSPHNETILASSGTDRRLNV 344
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 19 HKKKVHSVAWNCTGTK------LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
H H+ NC LA+GS D+T +W + + K+K H D + Q+
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEIFQV 323
Query: 73 CWDPKHADLIATASGDKTVRLWD 95
W P + ++A++ D+ + +WD
Sbjct: 324 QWSPHNETILASSGTDRRLNVWD 346
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKD------IELR 63
LHS + HK ++ V W+ T LAS D+ VW + G + + EL
Sbjct: 310 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL 367
Query: 64 ----GHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH +V +AW G +LASG D ++W + H +V + W P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78 HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
++L+AT G DK + W+A +G + + ++ + P I G D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
I
Sbjct: 331 I 331
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
T V SV W+ G+ L+ G + ++ +E + K + GH V L W+
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLRTMAGHQARVGCLSWN- 185
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELT 133
+H ++++ S + D R Q L G E + ++ DG +A G D+ +
Sbjct: 186 RH--VLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242
Query: 134 ILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
I D R P + V +AW + L TG GT++
Sbjct: 243 IWDARSSIPKFTKTNHNAAVKAVAW-CPWQSNLLATGGGTMD 283
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211
V + W+ G + GNG V++ S L T+ H A C++ + + GS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 212 DSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG----- 265
+ D+ + T V +++ G +AS D + I + +
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 266 RTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNK 298
+T H AA+ +V W P + NLLA G +K
Sbjct: 255 KTNHN----AAVKAVAWCPWQSNLLATGGGTMDK 284
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 33/225 (14%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
+ +I G+RD+ L + + K P H + Y +
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
V P P V + G GS D+ + +WD+++M C+ +
Sbjct: 252 --VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277
+ + + H SAS D I I ++ G ++ + A+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S+D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELM-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V +V+ + G + SGS D T VW + + L GH D + +D +
Sbjct: 268 GHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYI----LSGHTDRIYSTIYDHE 321
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
I+ AS D T+R+WD +G+
Sbjct: 322 RKRCIS-ASMDTTIRIWDLENGEL 344
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 37/281 (13%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLWDA-RSGKCSQQAE--------------------LSGENI 112
+ K+ I T S D T+ +W + E L G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 113 NI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTG 169
++ T G + G+ D+ L + DV + K ++ G+ + ++ + +
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASM 330
Query: 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
+ T+ + + + T+ HTA + + ++ +AD + WD ++ R F
Sbjct: 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY--SRKF 386
Query: 230 TKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVH 269
+ + I+ + D I S SE+ F +I N+ +G+ VH
Sbjct: 387 SYHHTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVH 426
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18 GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
GH V +AW +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
+ +++ RK
Sbjct: 199 RVRVIEPRK 207
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H V+ ++ G ++AS D+T +V+ E G+ K +E++ H D V
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAET---GE-KLLEIKAHEDEV 666
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH---IAV 125
LC D IAT S DK V++W++ +G+ + E +N + + +H +A
Sbjct: 667 --LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 126 GNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
G+ D L + D+ + K FG+ VN ++ ++ + +GT+++
Sbjct: 725 GSSDCFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T++V + L + AH C A R+ A S D V +W+ V T
Sbjct: 641 ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHT 700
Query: 229 FTKLEWPVRTISFSHTGDY--IASASEDLFIDISNVHTGRTVHQIPCRAAM-------NS 279
+ + V F+++ + +A+ S D F+ + + ++Q CR M N
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD------LNQKECRNTMFGHTNSVNH 754
Query: 280 VEWNPKYNLLAYAGDD 295
++P LLA D
Sbjct: 755 CRFSPDDKLLASCSAD 770
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------A 66
+++ H+ V S + TK +S S D+TA++W + + ELRGH A
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL----LLPLHELRGHNGCVRCSA 1140
Query: 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGEN--------INITYK 117
SVD + L+AT + +R+W+ +G+ A LS E ++ +
Sbjct: 1141 FSVD--------STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 118 PDG 120
PDG
Sbjct: 1193 PDG 1195
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 50/293 (17%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH VH V ++ G+ + S DQT R+W E K + L+ D V Q +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCKNSAVMLKQEVDVVFQ-----E 938
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137
+ ++ + ++L + R+G+ E ++ P +IA G+ + + IL++
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLS--PHLQYIAFGDENGAIEILEL 996
Query: 138 ---RKFKP-IHRRKFGYEVNEIA----------------WNMTGEMFFLTTG-------- 169
R F+ +K + + A WN + G
Sbjct: 997 VNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDF 1056
Query: 170 -------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+GTV+V + V H I F+ SAD
Sbjct: 1057 RLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Query: 217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269
+W +L + VR +FS +A+ ++ I I NV G +H
Sbjct: 1117 IWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
E H+ +V A++ +A+ SVD+ ++W+ D H++ V+ +
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD----EHSEQVNCCHF 713
Query: 75 -DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
+ H L+AT S D ++LWD +C ++N + PD +A + D L
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Query: 133 TILD---VRKFKPIHRRKF 148
+ D + K I+ ++F
Sbjct: 774 KLWDATSANERKSINVKQF 792
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 18 GHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
GH V +AW C +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG 169
+ +++ RK + + +E + E LTTG
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 33/225 (14%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
+ +I G+RD+ L + + K P H + Y +
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232
V P P V + G GS D+ + +WD+++ C+ +
Sbjct: 252 --VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277
+ + + H SAS D I I ++ G + + A+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELX-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V +V+ + G + SGS D T VW + K I L GH D + +D +
Sbjct: 268 GHXASVRTVSGH--GNIVVSGSYDNTLIVWDV---AQXKCLYI-LSGHTDRIYSTIYDHE 321
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
I+ AS D T+R+WD +G+
Sbjct: 322 RKRCIS-ASXDTTIRIWDLENGEL 344
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 111/281 (39%), Gaps = 37/281 (13%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLWDA-RSGKCSQQAE--------------------LSGENI 112
+ K+ I T S D T+ +W + E L G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 113 NI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTG 169
++ T G + G+ D+ L + DV + K ++ G+ + ++ + +
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS-GHTDRIYSTIYDHERKRCISASX 330
Query: 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
+ T+ + + T+ HTA + + ++ +AD + WD ++ R F
Sbjct: 331 DTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY--SRKF 386
Query: 230 TKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVH 269
+ + I+ + D I S SE+ F +I N+ +G+ VH
Sbjct: 387 SYHHTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVH 426
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 65/262 (24%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H + L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
K ++A+ S D V +W +G+ SQ IAV
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQ-------------------IAV----------- 94
Query: 137 VRKFKPIHRRKFGYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTA 192
+H VN + W + G + + + +G V V+ + ++ AH
Sbjct: 95 ----HAVH----SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 193 GCYCIAIDPM-------------GRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWP 235
G + P R F G AD+LV +W D + T
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 236 VRTISFSHT---GDYIASASED 254
VR +++S T Y+AS S+D
Sbjct: 207 VRDVAWSPTVLLRSYLASVSQD 228
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 65/262 (24%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G ++A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
K ++A+ S D V +W +G+ SQ IAV
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQ-------------------IAV----------- 94
Query: 137 VRKFKPIHRRKFGYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTA 192
+H VN + W + G M + + +G V V+ + ++ AH
Sbjct: 95 ----HAVHSAS----VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146
Query: 193 GCYCIAIDPM-------------GRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWP 235
G + P R F G AD+LV +W D + T
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206
Query: 236 VRTISFSHT---GDYIASASED 254
VR +++S T Y+AS S+D
Sbjct: 207 VRDVAWSPTVLLRSYMASVSQD 228
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQL 72
T HKK + SVAW + LA+GS D T +W E + +++L GH + V +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGV 113
Query: 73 CWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKPDGTHIAVGN 127
W +AT S DK+V +W+ SG+ S E S + ++ + P +A +
Sbjct: 114 AW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 128 RDDELTI 134
DD + I
Sbjct: 173 YDDTVRI 179
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+ ++ ++ + ++ H ++ + W P H L+A S D TV +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Query: 95 DARSGKCSQQAEL---------SGENINITYKPDGTHIAVGNRDDELTI 134
A+ + E+ E + + DG ++A +RD + I
Sbjct: 86 -AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 22/163 (13%)
Query: 153 NEIAWNMTGEMFFLTTGNGTVEV----LTYPSLRPLDTV--VAHTAGCYCIAIDPMGRYF 206
E W+ L TG+ ++ + Y +D + AH +A P
Sbjct: 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL 73
Query: 207 AVGSADSLVSLWDIS-------EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 259
A GS DS VS+W EM + E V+ +++S+ G Y+A+ S D + I
Sbjct: 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
Query: 260 SNVHTGRTVHQIPCRAAMNS-------VEWNPKYNLLAYAGDD 295
T + + C + + V W+P LLA + D
Sbjct: 134 --WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 20/169 (11%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H + V V W+ + LAS S D T R+W V L GH +V +D
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA--VLNGHEGTVWSSDFDKTE 209
Query: 79 ADL-IATASGDKTVRLWDARSGKCSQQAELSGENI----------NITYKPDGTHIAVGN 127
+ + S D TVR+W Q E E I N+ + +G +VG
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG- 268
Query: 128 RDDELTILDVR--KFKPIHRRKFG---YEVNEIAW-NMTGEMFFLTTGN 170
D L + + ++K +R YE+N + W + G+ T G+
Sbjct: 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
L I + +K G E + IA + TG ++ +G + VL+ + P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+++DP+G+ G ++ S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 24/235 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVG--SADSLVSLWDISEMLCVRTFTKLEW 234
T+ +CIA P GR Y A G + +++SL + L + KL W
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVW 317
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
P++ +IA+AS DKTV+LW D +CS + + G ++ + P G +
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
A D L + D +P R +W +T EM L+
Sbjct: 128 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLS 160
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
L+GH + + W P++ ++ATAS D V+LWD R +GK SQ E +
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTILD--------VRKFKPIHRRKFGYEVNEIA 156
G+ + + DG H+ D+ + + + V K + K G + ++
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VS 300
Query: 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+ E F+ G+ T+ V T S + + H C + GS D +
Sbjct: 301 CGCSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 217 LW 218
W
Sbjct: 360 AW 361
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH-- 122
H SV+ + W P + ++S DKT+++WD + + + + P T
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 123 -IAVGNRDDELTILDVR 138
+AVG R ++ + D++
Sbjct: 158 LVAVGTRGPKVQLCDLK 174
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76 PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
P++ +IA+AS DKTV+LW D +CS + + G ++ + P G +
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167
A D L + D +P R +W +T EM L+
Sbjct: 126 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLS 158
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 299 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH + + +N T L S S D T R+WH G+G ++ GH+ S+ W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
D + + S D +VRLW + + + G I DG AV D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
++K R +G
Sbjct: 359 LKKLNSKSRSLYG 371
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 57/258 (22%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRP 183
+++++ ++ PI VN +W GE NGT E
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH------NGTKE--------- 171
Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTI 239
R F G AD+LV +W D + T VR +
Sbjct: 172 -------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 240 SFSHT---GDYIASASED 254
++S T Y+AS S+D
Sbjct: 213 AWSPTVLLRSYLASVSQD 230
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 92 RLW 94
+W
Sbjct: 234 IIW 236
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
P++ +IA+AS DKTV+LW+ Q E SG N
Sbjct: 68 PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
L I + +K G E + IA + TG ++ +G + VL+ + P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+++DP+G+ G ++ S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 24/235 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVG--SADSLVSLWDISEMLCVRTFTKLEW 234
T+ +CIA P GR Y A G + +++SL + L + KL W
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVW 317
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
V +W+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 57/258 (22%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRP 183
+++++ ++ PI VN +W GE NGT E
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH------NGTKE--------- 169
Query: 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTI 239
R F G AD+LV +W D + T VR +
Sbjct: 170 -------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 240 SFSHT---GDYIASASED 254
++S T Y+AS S+D
Sbjct: 211 AWSPTVLLRSYLASVSQD 228
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
L I + +K G E + IA + TG ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
L I + +K G E + IA + TG ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 268
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 306 PDGARLLTTDQKSEIRV 322
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 306 PDGARLLTTDQKSEIRV 322
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 306
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 307 PDGARLLTTDQKSEIRV 323
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 10/208 (4%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
E T +++A + S D VW + H + + +GH D C
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGAS--CI 189
Query: 75 DPKH-ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
D + + T D TVR WD R G+ QQ + + + ++ Y P G +AVG +
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
+L V K V + + G+ F T + + P + ++
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309
Query: 194 CYC-IAIDPMGRYFAVGSADSLVSLWDI 220
C I++D +Y GS D +++++
Sbjct: 310 LSCDISVD--DKYIVTGSGDKKATVYEV 335
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 48/122 (39%)
Query: 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 235
L P+ R + + CY +AI P + +D +++WD+ VR F
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185
Query: 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295
I S+ G + + D + ++ GR + Q + + S+ + P LA +
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES 245
Query: 296 KN 297
N
Sbjct: 246 SN 247
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 47/253 (18%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G + A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188
+++++ ++ PI VN +W + NGT E
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW-APATIEEDGEHNGTKE-------------- 169
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT 244
R F G AD+LV +W D + T VR +++S T
Sbjct: 170 --------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 245 ---GDYIASASED 254
Y AS S+D
Sbjct: 216 VLLRSYXASVSQD 228
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +V+ +GT+ SGS D +VW + +V R HA V + P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLSSYRAHAAQVTCVAASPHK 181
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV-GNRDDELTI 134
+ + S D + LWD R K + Q S ++ + P + + V G+ + +++
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241
Query: 135 LDVRK 139
+D +
Sbjct: 242 VDTKS 246
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 22/224 (9%)
Query: 16 YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIE-----PHGHGKVKDIELRGHADSV 69
++ H V +V +N LASG + +W + P + + + D V
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT--------YKPDGT 121
L W+ A + A+A +WD ++ K + N I + + T
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228
Query: 122 HIAVG---NRDDELTILDVRKFK-PIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV 175
+A + D + I D+R P+ G++ + + W E L++G +
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
Query: 176 LTYP-SLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSL 217
L P S L A C+ P FA S D+ + +
Sbjct: 289 LWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 59/242 (24%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH+ V S+++ + SGS D+TA+VW G + L+ H SV WD K
Sbjct: 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWK-----EGSLV-YNLQAHNASV----WDAK 149
Query: 78 HADL----IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
TAS DKT++LW ++D++
Sbjct: 150 VVSFSENKFLTASADKTIKLW---------------------------------QNDKV- 175
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
++ F IH V +A G F + +G ++++ + L T H +
Sbjct: 176 ---IKTFSGIHNDV----VRHLAVVDDGH-FISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 253
YCI + P G + G D V +W + T + ++ GD I +S+
Sbjct: 228 VYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSD 286
Query: 254 DL 255
+L
Sbjct: 287 NL 288
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 15/228 (6%)
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWD---ARSGKCSQQAELSGENI--NITYKPDGTHI 123
V + W + L+A+ SG V LW+ S ++ A+ ++I ++ DGT
Sbjct: 97 VTDVAWVSEKGILVASDSG--AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA 154
Query: 124 AVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR 182
G +D + + D+ + + EVN +A + FL+ G +L + + +
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRK 213
Query: 183 P-----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 237
P +D + T FA G VSL +I +T +
Sbjct: 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT 273
Query: 238 TISFS-HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 284
+++S H+ ++AS SED + + + + R + V W+P
Sbjct: 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSP 321
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +++ GT+ SG D + +VW + K H+ V+ + P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGK 193
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTH-IAVGNRDDELTI 134
+ + D + LWD R K + + + + ++T+ P+ A G+ +++
Sbjct: 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Query: 135 LDVR 138
++++
Sbjct: 254 VNIK 257
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 164 FFLTTGNGTVEVL--TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
F L T G ++VL + R +D AH + + P G S D + +W +
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269
+ RT V I+ G + SAS D I + TG T+H
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 184
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 185 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 213
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210
E+ ++ + +GE ++ + +++ + T++ H A IAI GR S
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 211 ADSLVSLWDISEMLCVRTFTKLEWP 235
D + LW+ + TF + E P
Sbjct: 201 LDGTIRLWECGTGTTIHTFNRKENP 225
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 164 FFLTTGNGTVEVL--TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
F L T G ++VL + R +D AH + + P G S D + +W +
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269
+ RT V I+ G + SAS D I + TG T+H
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 214
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 181
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 182 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 210
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210
E+ ++ + +GE ++ + +++ + T++ H A IAI GR S
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 211 ADSLVSLWDISEMLCVRTFTKLEWP 235
D + LW+ + TF + E P
Sbjct: 198 LDGTIRLWECGTGTTIHTFNRKENP 222
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H+R ++ H K V V W ++ + S D+ A V+ P G K + LR + +
Sbjct: 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-RAATF 105
Query: 72 LCWDPKHADLIATASGDKTVRL 93
+ W P D A SG + + +
Sbjct: 106 VRWSPNE-DKFAVGSGARVISV 126
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 263 STKLLTTDQRNEIRV 277
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 262 STKLLTTDQRNEIRV 276
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVG 209
E+ + N+ G F + + + EV T + +TV +A G ID G + V
Sbjct: 171 EIKDKGLNLDGVHFHVGSDSHNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGGFSQVA 230
Query: 210 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267
+ + + +T +LE+P RT + G Y+AS + F +S++H R
Sbjct: 231 PFEEFAATIE-------KTIKELEFPERTRFIAEPGRYMAS---NAFHLVSSLHGKRV 278
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD--PKHAD 80
+H+V + T L S+ Q ++W G+ + + L G D V C D P
Sbjct: 194 LHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQILSLTG--DRVPLHCVDRHPNQQH 250
Query: 81 LIATASGDKTVRLWDARSG 99
++AT D + +WD R G
Sbjct: 251 VVATGGQDGMLSIWDVRQG 269
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 16 YTGHKKKV--HSVAW-NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+TGH V SV W G+V+ + ++ GHG + S +Q
Sbjct: 211 FTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVL----------SGEQY 260
Query: 73 CW--DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
W DP A+ + + +R+W G SQ L+G + ++ P + GN D
Sbjct: 261 VWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNG--VTVSAPPFNSMDWSGNSLD 318
Query: 131 ELT--ILDVRKFKPIHRRKFGYEV 152
+T + D ++ + + G E+
Sbjct: 319 LITCRVDDYKQVGAFYGQTDGLEM 342
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK 139
+L+ A V L +R + +++ +GE IN T H+A+ NR + ++D +
Sbjct: 57 NLVTEAVMQMLVDLAKSRGVEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVDGKD 116
Query: 140 FKPIHRRKFGYEVNEIAWNM 159
P EVN + M
Sbjct: 117 VMP--------EVNRVLEKM 128
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 201 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 260
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 261 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 304
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 200 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 259
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 260 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 303
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 173 QPLXSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 232
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 233 FALSKTGSLNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,339,851
Number of Sequences: 62578
Number of extensions: 445604
Number of successful extensions: 2085
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 435
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)