Query 021319
Match_columns 314
No_of_seqs 199 out of 2184
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 09:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1407 WD40 repeat protein [F 100.0 2.3E-60 4.9E-65 361.7 28.6 309 3-313 3-312 (313)
2 KOG0271 Notchless-like WD40 re 100.0 4.4E-48 9.5E-53 309.0 23.9 296 2-309 135-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.2E-46 4.8E-51 299.2 25.0 286 13-312 108-439 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.2E-46 1.1E-50 300.4 22.8 281 18-310 173-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.6E-41 3.4E-46 262.8 33.3 286 11-310 46-343 (343)
6 KOG0265 U5 snRNP-specific prot 100.0 1.5E-41 3.3E-46 263.7 27.6 282 15-300 42-334 (338)
7 KOG0279 G protein beta subunit 100.0 1.1E-39 2.5E-44 250.9 31.2 291 11-312 6-313 (315)
8 KOG0273 Beta-transducin family 100.0 4.1E-40 8.9E-45 269.6 29.7 276 21-311 236-522 (524)
9 KOG0293 WD40 repeat-containing 100.0 7.5E-41 1.6E-45 270.0 23.8 296 3-312 209-513 (519)
10 KOG0273 Beta-transducin family 100.0 2E-39 4.4E-44 265.6 27.0 287 14-311 173-481 (524)
11 KOG0272 U4/U6 small nuclear ri 100.0 9.3E-41 2E-45 270.0 18.4 246 11-261 208-458 (459)
12 KOG0315 G-protein beta subunit 100.0 4.9E-38 1.1E-42 238.3 29.3 274 5-282 21-308 (311)
13 cd00200 WD40 WD40 domain, foun 100.0 3.8E-37 8.2E-42 255.9 36.9 284 14-310 3-289 (289)
14 PLN00181 protein SPA1-RELATED; 100.0 3.1E-37 6.7E-42 290.1 39.5 287 15-311 478-792 (793)
15 KOG0318 WD40 repeat stress pro 100.0 3.1E-37 6.7E-42 256.0 34.4 292 5-312 177-602 (603)
16 KOG0263 Transcription initiati 100.0 7E-39 1.5E-43 277.4 23.4 245 20-313 378-650 (707)
17 KOG0645 WD40 repeat protein [G 100.0 1.8E-36 4E-41 232.4 30.8 287 10-313 4-312 (312)
18 KOG0295 WD40 repeat-containing 100.0 7.4E-38 1.6E-42 248.9 24.0 281 16-309 104-403 (406)
19 KOG0284 Polyadenylation factor 100.0 3.6E-39 7.9E-44 259.8 16.6 273 20-297 96-373 (464)
20 KOG0282 mRNA splicing factor [ 100.0 9.6E-39 2.1E-43 262.4 18.5 287 12-310 206-503 (503)
21 KOG0315 G-protein beta subunit 100.0 2.5E-36 5.5E-41 229.1 29.0 267 33-313 11-289 (311)
22 KOG0643 Translation initiation 100.0 9.4E-36 2E-40 228.1 27.8 287 14-314 4-319 (327)
23 KOG0285 Pleiotropic regulator 100.0 5.7E-36 1.2E-40 237.9 25.2 278 13-297 144-432 (460)
24 KOG0291 WD40-repeat-containing 100.0 7.7E-35 1.7E-39 251.0 33.6 290 11-311 136-507 (893)
25 KOG0266 WD40 repeat-containing 100.0 6.4E-35 1.4E-39 256.9 32.2 290 13-311 151-453 (456)
26 KOG0286 G-protein beta subunit 100.0 8E-35 1.7E-39 225.6 27.8 248 12-261 89-343 (343)
27 KOG0263 Transcription initiati 100.0 1E-35 2.3E-40 257.8 23.0 235 12-292 443-703 (707)
28 KOG0279 G protein beta subunit 100.0 1.3E-34 2.8E-39 223.1 26.4 245 59-312 8-262 (315)
29 KOG0316 Conserved WD40 repeat- 100.0 4.4E-35 9.6E-40 220.7 23.2 281 8-297 5-293 (307)
30 KOG0318 WD40 repeat stress pro 100.0 1E-33 2.2E-38 235.2 32.8 287 14-313 141-561 (603)
31 KOG0291 WD40-repeat-containing 100.0 5.5E-34 1.2E-38 245.8 31.8 280 20-313 307-613 (893)
32 KOG0296 Angio-associated migra 100.0 1E-33 2.2E-38 225.5 27.2 286 13-313 99-399 (399)
33 KOG0319 WD40-repeat-containing 100.0 1.1E-34 2.3E-39 249.6 21.8 261 8-299 353-614 (775)
34 KOG0319 WD40-repeat-containing 100.0 1.2E-33 2.6E-38 243.2 26.3 288 14-313 98-578 (775)
35 KOG0281 Beta-TrCP (transducin 100.0 9.9E-35 2.1E-39 230.3 15.3 267 20-313 197-478 (499)
36 KOG0266 WD40 repeat-containing 100.0 6.2E-33 1.3E-37 244.4 28.2 248 12-263 195-454 (456)
37 KOG1446 Histone H3 (Lys4) meth 100.0 9.3E-32 2E-36 211.0 31.6 287 14-306 8-307 (311)
38 KOG0306 WD40-repeat-containing 100.0 1.7E-32 3.7E-37 236.5 27.3 279 11-297 364-657 (888)
39 KOG0288 WD40 repeat protein Ti 100.0 7.7E-34 1.7E-38 229.5 17.3 283 13-309 168-458 (459)
40 KOG0276 Vesicle coat complex C 100.0 9.8E-33 2.1E-37 233.7 24.6 280 13-297 6-292 (794)
41 KOG0295 WD40 repeat-containing 100.0 3.8E-33 8.2E-38 222.2 20.3 247 12-262 142-405 (406)
42 KOG0306 WD40-repeat-containing 100.0 8.4E-32 1.8E-36 232.3 28.9 284 13-312 100-580 (888)
43 KOG0647 mRNA export protein (c 100.0 6.4E-32 1.4E-36 210.5 25.0 271 19-294 26-313 (347)
44 KOG0278 Serine/threonine kinas 100.0 4.2E-33 9.1E-38 211.8 17.3 283 13-311 7-296 (334)
45 KOG0265 U5 snRNP-specific prot 100.0 7.9E-32 1.7E-36 209.7 22.8 243 15-261 85-336 (338)
46 KOG0282 mRNA splicing factor [ 100.0 6.6E-33 1.4E-37 228.2 17.2 244 12-261 250-503 (503)
47 KOG0283 WD40 repeat-containing 100.0 5.7E-32 1.2E-36 236.4 23.9 247 14-262 260-575 (712)
48 cd00200 WD40 WD40 domain, foun 100.0 4.3E-30 9.4E-35 213.3 32.2 244 13-261 44-289 (289)
49 KOG0284 Polyadenylation factor 100.0 5.2E-33 1.1E-37 224.4 13.9 234 66-300 96-333 (464)
50 KOG0268 Sof1-like rRNA process 100.0 1E-32 2.2E-37 219.7 15.3 277 15-310 61-343 (433)
51 KOG0640 mRNA cleavage stimulat 100.0 2.6E-31 5.7E-36 207.9 22.9 284 12-296 104-418 (430)
52 KOG2096 WD40 repeat protein [G 100.0 4.8E-31 1E-35 207.1 23.0 280 14-295 80-394 (420)
53 KOG0313 Microtubule binding pr 100.0 2.4E-30 5.2E-35 207.3 26.4 273 17-299 102-413 (423)
54 KOG0296 Angio-associated migra 100.0 4.5E-30 9.8E-35 204.8 27.1 284 12-301 56-353 (399)
55 PLN00181 protein SPA1-RELATED; 100.0 7.7E-30 1.7E-34 240.2 33.6 239 19-262 531-792 (793)
56 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 229.3 24.6 274 18-296 7-314 (1202)
57 KOG1036 Mitotic spindle checkp 100.0 7.4E-30 1.6E-34 199.6 26.4 267 20-295 13-295 (323)
58 KOG0277 Peroxisomal targeting 100.0 3.3E-31 7.1E-36 201.9 18.1 239 20-310 60-307 (311)
59 KOG0292 Vesicle coat complex C 100.0 7E-30 1.5E-34 224.0 28.6 246 12-263 43-321 (1202)
60 KOG0275 Conserved WD40 repeat- 100.0 3.7E-31 8E-36 208.5 18.4 283 17-309 210-506 (508)
61 KOG0293 WD40 repeat-containing 100.0 1.2E-30 2.6E-35 211.2 20.4 247 13-264 262-514 (519)
62 KOG2055 WD40 repeat protein [G 100.0 6.7E-30 1.4E-34 209.5 24.4 296 6-311 193-511 (514)
63 KOG0274 Cdc4 and related F-box 100.0 1.1E-29 2.4E-34 223.7 27.7 272 19-312 207-482 (537)
64 KOG0276 Vesicle coat complex C 100.0 3.1E-30 6.6E-35 218.6 22.0 240 62-310 9-255 (794)
65 KOG0772 Uncharacterized conser 100.0 9E-30 2E-34 211.4 23.0 285 11-296 158-479 (641)
66 KOG0645 WD40 repeat protein [G 100.0 1.6E-28 3.5E-33 188.8 28.2 233 60-297 8-254 (312)
67 KOG0278 Serine/threonine kinas 100.0 1.2E-30 2.7E-35 198.4 16.1 202 18-224 98-300 (334)
68 KOG0973 Histone transcription 100.0 3.2E-29 7E-34 224.6 27.9 289 16-313 8-356 (942)
69 KOG1407 WD40 repeat protein [F 100.0 7E-30 1.5E-34 195.4 19.7 237 60-298 14-255 (313)
70 KOG0288 WD40 repeat protein Ti 100.0 2.3E-30 5E-35 209.4 17.6 242 12-260 211-458 (459)
71 KOG0285 Pleiotropic regulator 100.0 9.7E-30 2.1E-34 202.6 20.8 240 61-311 146-388 (460)
72 KOG0641 WD40 repeat protein [G 100.0 1.7E-28 3.8E-33 184.4 26.3 255 14-312 83-349 (350)
73 PTZ00421 coronin; Provisional 100.0 2.6E-28 5.7E-33 214.6 31.2 231 14-244 69-314 (493)
74 KOG0289 mRNA splicing factor [ 100.0 8.7E-29 1.9E-33 201.6 25.8 278 21-311 220-505 (506)
75 PTZ00421 coronin; Provisional 100.0 6.6E-28 1.4E-32 212.1 33.2 281 6-286 4-315 (493)
76 KOG0316 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 187.7 21.3 241 7-255 46-292 (307)
77 PTZ00420 coronin; Provisional 100.0 2E-27 4.3E-32 210.3 34.4 246 38-287 50-319 (568)
78 KOG1332 Vesicle coat complex C 100.0 8.7E-30 1.9E-34 193.1 16.7 246 14-300 5-282 (299)
79 KOG0313 Microtubule binding pr 100.0 2.1E-28 4.5E-33 196.3 22.9 250 11-263 135-418 (423)
80 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.6E-26 3.5E-31 194.4 35.4 268 32-312 1-279 (300)
81 PTZ00420 coronin; Provisional 100.0 2.8E-27 6.1E-32 209.3 31.6 233 12-245 66-318 (568)
82 KOG0643 Translation initiation 100.0 2.2E-27 4.7E-32 182.4 24.6 234 60-294 4-251 (327)
83 KOG0310 Conserved WD40 repeat- 100.0 6.7E-28 1.5E-32 199.0 23.4 244 14-263 62-309 (487)
84 KOG1273 WD40 repeat protein [G 100.0 1.1E-27 2.4E-32 188.1 22.7 273 23-311 26-321 (405)
85 KOG0294 WD40 repeat-containing 100.0 4.3E-27 9.3E-32 184.6 25.6 261 13-282 36-305 (362)
86 KOG0647 mRNA export protein (c 100.0 1.6E-27 3.4E-32 186.1 22.7 233 14-253 66-313 (347)
87 KOG0650 WD40 repeat nucleolar 100.0 1.9E-27 4.1E-32 200.9 24.3 290 6-309 386-732 (733)
88 KOG0264 Nucleosome remodeling 100.0 1E-27 2.2E-32 196.4 21.7 260 11-311 115-403 (422)
89 KOG0299 U3 snoRNP-associated p 100.0 4.4E-27 9.5E-32 192.9 24.9 277 13-292 135-443 (479)
90 KOG0281 Beta-TrCP (transducin 100.0 5.2E-29 1.1E-33 197.9 13.2 228 65-313 196-429 (499)
91 KOG2445 Nuclear pore complex c 100.0 1.5E-26 3.1E-31 181.1 26.4 268 16-284 9-342 (361)
92 KOG0305 Anaphase promoting com 100.0 1.1E-26 2.4E-31 198.2 27.8 271 23-311 180-460 (484)
93 KOG0308 Conserved WD40 repeat- 100.0 6.2E-28 1.4E-32 205.5 19.6 277 18-295 19-318 (735)
94 KOG1446 Histone H3 (Lys4) meth 100.0 3E-26 6.4E-31 180.2 27.0 241 13-261 49-301 (311)
95 KOG0973 Histone transcription 100.0 6.5E-27 1.4E-31 209.9 25.3 248 16-264 65-356 (942)
96 KOG1036 Mitotic spindle checkp 100.0 1.2E-26 2.5E-31 181.7 23.3 228 17-253 51-294 (323)
97 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.3E-25 7.3E-30 186.4 34.3 264 14-284 25-300 (300)
98 KOG0274 Cdc4 and related F-box 100.0 1.3E-26 2.9E-31 204.4 25.8 242 16-271 245-490 (537)
99 KOG0268 Sof1-like rRNA process 100.0 1.5E-27 3.2E-32 190.4 16.4 257 2-269 87-351 (433)
100 KOG1063 RNA polymerase II elon 100.0 1.9E-26 4.1E-31 197.8 23.8 297 8-313 255-649 (764)
101 KOG1539 WD repeat protein [Gen 100.0 1.6E-26 3.4E-31 202.0 23.5 289 6-295 269-638 (910)
102 KOG1274 WD40 repeat protein [G 100.0 1.6E-25 3.5E-30 197.6 29.8 269 17-295 10-291 (933)
103 KOG0305 Anaphase promoting com 100.0 5.3E-26 1.2E-30 194.0 24.2 239 19-265 216-463 (484)
104 KOG0277 Peroxisomal targeting 100.0 3.3E-27 7.1E-32 180.2 14.9 212 7-262 91-308 (311)
105 KOG0289 mRNA splicing factor [ 99.9 2.6E-25 5.7E-30 181.4 24.5 244 13-261 254-504 (506)
106 KOG2919 Guanine nucleotide-bin 99.9 2.8E-25 6.1E-30 175.1 22.4 273 21-296 50-362 (406)
107 KOG0301 Phospholipase A2-activ 99.9 6.1E-25 1.3E-29 188.6 26.0 280 13-313 7-289 (745)
108 KOG0641 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 160.1 28.0 242 19-297 31-296 (350)
109 KOG0310 Conserved WD40 repeat- 99.9 5.6E-25 1.2E-29 181.9 23.9 273 20-299 26-304 (487)
110 KOG0264 Nucleosome remodeling 99.9 1.5E-25 3.3E-30 183.7 20.1 210 15-264 172-405 (422)
111 KOG0269 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 193.9 20.6 277 22-300 41-336 (839)
112 KOG0283 WD40 repeat-containing 99.9 1.9E-25 4E-30 195.8 20.4 203 13-221 362-576 (712)
113 KOG0640 mRNA cleavage stimulat 99.9 1.9E-25 4.2E-30 175.2 18.2 243 61-311 107-382 (430)
114 KOG0300 WD40 repeat-containing 99.9 5.2E-25 1.1E-29 173.4 20.2 280 12-299 140-471 (481)
115 KOG0772 Uncharacterized conser 99.9 2.4E-25 5.2E-30 185.3 19.3 242 20-261 214-485 (641)
116 KOG0639 Transducin-like enhanc 99.9 4E-25 8.6E-30 183.6 20.3 287 5-297 405-697 (705)
117 KOG0275 Conserved WD40 repeat- 99.9 1.2E-25 2.5E-30 177.5 15.4 234 64-299 211-462 (508)
118 KOG0294 WD40 repeat-containing 99.9 1.8E-23 4E-28 164.3 25.5 264 34-312 3-281 (362)
119 KOG0299 U3 snoRNP-associated p 99.9 3E-24 6.4E-29 176.4 21.4 244 60-314 136-412 (479)
120 KOG0639 Transducin-like enhanc 99.9 4.3E-25 9.3E-30 183.3 16.4 239 19-262 464-703 (705)
121 KOG2106 Uncharacterized conser 99.9 1E-22 2.2E-27 169.3 29.7 268 19-299 199-472 (626)
122 KOG0270 WD40 repeat-containing 99.9 2E-24 4.3E-29 176.7 19.0 237 32-269 192-455 (463)
123 KOG2048 WD40 repeat protein [G 99.9 9.6E-23 2.1E-27 174.8 29.5 286 14-307 19-322 (691)
124 KOG4283 Transcription-coupled 99.9 2.6E-23 5.5E-28 162.3 23.5 282 17-300 40-361 (397)
125 KOG1063 RNA polymerase II elon 99.9 1.3E-23 2.8E-28 180.5 24.0 293 12-313 183-603 (764)
126 KOG2106 Uncharacterized conser 99.9 2.8E-22 6.2E-27 166.7 29.4 270 20-304 246-521 (626)
127 KOG0321 WD40 repeat-containing 99.9 4.3E-24 9.4E-29 181.9 19.1 256 15-313 95-392 (720)
128 KOG4328 WD40 protein [Function 99.9 3.7E-23 8E-28 170.0 22.9 281 14-295 180-485 (498)
129 KOG0646 WD40 repeat protein [G 99.9 6.7E-24 1.5E-28 174.6 18.3 226 20-250 81-336 (476)
130 KOG1539 WD repeat protein [Gen 99.9 8E-23 1.7E-27 179.0 25.5 281 18-311 241-605 (910)
131 KOG0267 Microtubule severing p 99.9 5.6E-25 1.2E-29 189.7 9.9 250 34-294 6-258 (825)
132 KOG1408 WD40 repeat protein [F 99.9 1.6E-22 3.5E-27 174.6 24.1 277 22-299 326-708 (1080)
133 KOG0308 Conserved WD40 repeat- 99.9 9E-24 2E-28 180.3 15.9 249 12-262 65-326 (735)
134 KOG0302 Ribosome Assembly prot 99.9 2.9E-23 6.2E-28 166.9 17.3 204 14-256 205-432 (440)
135 KOG0267 Microtubule severing p 99.9 2.5E-24 5.3E-29 185.8 10.7 237 14-255 22-260 (825)
136 KOG1274 WD40 repeat protein [G 99.9 5.3E-22 1.2E-26 175.6 25.1 239 64-312 11-262 (933)
137 KOG0269 WD40 repeat-containing 99.9 2E-23 4.4E-28 181.4 15.7 243 22-265 89-342 (839)
138 KOG4283 Transcription-coupled 99.9 1.1E-22 2.4E-27 158.8 17.1 205 63-267 40-280 (397)
139 KOG2096 WD40 repeat protein [G 99.9 5E-22 1.1E-26 156.7 20.5 231 61-293 81-350 (420)
140 KOG1332 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 154.3 16.1 221 12-264 48-287 (299)
141 KOG0646 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 161.0 23.3 261 36-311 11-306 (476)
142 KOG0650 WD40 repeat nucleolar 99.9 4.6E-22 1E-26 168.6 20.9 240 57-299 391-675 (733)
143 KOG0300 WD40 repeat-containing 99.9 5.2E-22 1.1E-26 156.6 19.4 244 60-313 142-429 (481)
144 KOG0307 Vesicle coat complex C 99.9 4.2E-23 9.1E-28 186.5 13.1 247 20-266 64-330 (1049)
145 KOG0302 Ribosome Assembly prot 99.9 3.1E-21 6.7E-26 155.3 22.0 241 17-296 148-431 (440)
146 KOG2445 Nuclear pore complex c 99.9 1.7E-20 3.6E-25 147.4 25.3 239 62-310 9-316 (361)
147 KOG0301 Phospholipase A2-activ 99.9 1.3E-21 2.9E-26 168.3 20.4 237 58-312 6-249 (745)
148 KOG4227 WD40 repeat protein [G 99.9 3.6E-21 7.7E-26 155.9 21.4 292 9-310 45-385 (609)
149 KOG2055 WD40 repeat protein [G 99.9 3.6E-21 7.7E-26 158.6 20.9 241 20-263 257-512 (514)
150 KOG2048 WD40 repeat protein [G 99.9 1.3E-19 2.8E-24 155.9 29.6 240 11-259 59-315 (691)
151 KOG1034 Transcriptional repres 99.9 5.8E-22 1.3E-26 156.8 14.2 266 18-302 87-381 (385)
152 KOG0307 Vesicle coat complex C 99.9 2.9E-22 6.3E-27 181.2 14.2 282 24-313 10-328 (1049)
153 KOG1408 WD40 repeat protein [F 99.9 2.8E-21 6.1E-26 167.1 18.4 243 18-264 457-714 (1080)
154 KOG1538 Uncharacterized conser 99.9 2.2E-20 4.7E-25 160.6 22.0 271 22-311 14-292 (1081)
155 PRK11028 6-phosphogluconolacto 99.9 1.4E-18 3.1E-23 148.2 33.4 269 35-312 5-304 (330)
156 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.7E-25 156.0 19.5 260 22-286 36-305 (673)
157 COG2319 FOG: WD40 repeat [Gene 99.9 1.5E-17 3.2E-22 145.6 37.2 286 15-312 60-359 (466)
158 KOG0322 G-protein beta subunit 99.9 2.2E-20 4.8E-25 143.8 15.6 283 14-311 8-322 (323)
159 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-20 7E-25 154.4 17.3 256 42-300 12-276 (673)
160 KOG1273 WD40 repeat protein [G 99.9 3.8E-19 8.3E-24 140.3 21.9 246 12-264 57-323 (405)
161 COG2319 FOG: WD40 repeat [Gene 99.9 3.7E-17 8E-22 143.1 36.5 287 12-312 147-442 (466)
162 KOG4328 WD40 protein [Function 99.9 9.8E-20 2.1E-24 150.0 18.3 234 61-294 181-440 (498)
163 KOG1445 Tumor-specific antigen 99.8 1E-19 2.2E-24 155.6 18.3 134 164-297 643-787 (1012)
164 KOG0270 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 148.4 17.9 205 17-225 240-453 (463)
165 KOG2110 Uncharacterized conser 99.8 7.6E-18 1.7E-22 135.6 27.2 234 20-264 5-249 (391)
166 KOG0303 Actin-binding protein 99.8 5.1E-19 1.1E-23 143.4 19.8 229 14-243 75-319 (472)
167 KOG2110 Uncharacterized conser 99.8 9.9E-18 2.1E-22 135.0 26.3 232 67-313 6-249 (391)
168 KOG1009 Chromatin assembly com 99.8 2.5E-18 5.5E-23 139.8 23.0 287 20-308 13-378 (434)
169 KOG1517 Guanine nucleotide bin 99.8 1.2E-18 2.6E-23 156.7 22.5 283 17-313 1061-1382(1387)
170 KOG2111 Uncharacterized conser 99.8 3.3E-17 7.2E-22 129.6 27.4 270 22-300 7-318 (346)
171 KOG1009 Chromatin assembly com 99.8 1.9E-18 4.1E-23 140.5 20.9 253 12-266 57-375 (434)
172 KOG1538 Uncharacterized conser 99.8 5.8E-19 1.2E-23 151.9 18.2 240 12-263 45-293 (1081)
173 KOG0771 Prolactin regulatory e 99.8 6.1E-19 1.3E-23 144.1 16.8 198 24-263 148-354 (398)
174 KOG0642 Cell-cycle nuclear pro 99.8 5.6E-19 1.2E-23 149.1 16.9 248 15-264 289-562 (577)
175 KOG1963 WD40 repeat protein [G 99.8 2.7E-17 5.8E-22 145.7 27.9 285 18-313 203-539 (792)
176 PRK11028 6-phosphogluconolacto 99.8 6.6E-17 1.4E-21 138.0 29.3 261 19-282 33-327 (330)
177 KOG0642 Cell-cycle nuclear pro 99.8 5.5E-19 1.2E-23 149.1 15.3 219 13-232 337-572 (577)
178 PRK01742 tolB translocation pr 99.8 1E-17 2.2E-22 147.5 23.1 235 41-286 183-427 (429)
179 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.5E-24 159.5 10.0 271 13-299 183-463 (1113)
180 KOG1334 WD40 repeat protein [G 99.8 8.9E-19 1.9E-23 145.6 13.3 286 14-310 136-464 (559)
181 KOG1587 Cytoplasmic dynein int 99.8 3.9E-17 8.4E-22 143.8 24.2 259 42-312 222-516 (555)
182 KOG1587 Cytoplasmic dynein int 99.8 3.3E-17 7.2E-22 144.2 23.0 246 19-264 241-517 (555)
183 KOG0321 WD40 repeat-containing 99.8 4.8E-18 1E-22 145.4 16.3 258 26-299 55-342 (720)
184 KOG1007 WD repeat protein TSSC 99.8 4E-17 8.6E-22 127.6 19.8 261 34-296 28-353 (370)
185 KOG1524 WD40 repeat-containing 99.8 9.7E-18 2.1E-22 141.1 17.5 260 18-296 12-278 (737)
186 KOG1188 WD40 repeat protein [G 99.8 2.6E-17 5.5E-22 131.3 18.9 267 33-311 41-345 (376)
187 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.6E-22 129.8 17.4 239 17-295 93-357 (364)
188 KOG1007 WD repeat protein TSSC 99.8 1.1E-16 2.5E-21 125.0 18.9 250 12-264 55-362 (370)
189 PRK01742 tolB translocation pr 99.8 1.5E-16 3.2E-21 140.1 20.9 222 13-244 196-426 (429)
190 KOG1240 Protein kinase contain 99.8 9E-16 1.9E-20 140.5 26.2 253 11-264 1039-1335(1431)
191 KOG1034 Transcriptional repres 99.8 3.2E-17 7E-22 130.1 14.3 238 9-262 124-382 (385)
192 KOG0303 Actin-binding protein 99.7 7.6E-16 1.6E-20 125.2 20.9 212 61-313 76-295 (472)
193 KOG2111 Uncharacterized conser 99.7 3.2E-15 7E-20 118.5 23.7 231 69-312 8-256 (346)
194 KOG2394 WD40 protein DMR-N9 [G 99.7 4.5E-16 9.7E-21 131.2 20.0 190 82-284 188-384 (636)
195 KOG1963 WD40 repeat protein [G 99.7 3.5E-15 7.5E-20 132.5 26.1 277 16-299 12-317 (792)
196 KOG4497 Uncharacterized conser 99.7 2.8E-15 6E-20 119.5 22.8 272 20-296 48-424 (447)
197 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 115.6 20.2 233 21-285 11-257 (325)
198 KOG3881 Uncharacterized conser 99.7 2.1E-15 4.6E-20 122.5 21.4 263 20-285 55-342 (412)
199 KOG0771 Prolactin regulatory e 99.7 7.6E-16 1.7E-20 126.2 18.7 184 112-296 148-346 (398)
200 PF08662 eIF2A: Eukaryotic tra 99.7 8.5E-16 1.8E-20 119.9 18.3 154 153-312 9-179 (194)
201 KOG2919 Guanine nucleotide-bin 99.7 7.8E-16 1.7E-20 122.2 17.9 232 20-255 104-362 (406)
202 KOG2321 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 125.6 22.9 271 18-297 49-336 (703)
203 PRK03629 tolB translocation pr 99.7 4.7E-14 1E-18 124.1 27.9 234 42-285 179-428 (429)
204 PF02239 Cytochrom_D1: Cytochr 99.7 3.8E-13 8.3E-18 115.2 32.7 265 35-310 9-345 (369)
205 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.3E-20 118.9 16.0 196 17-254 147-357 (364)
206 KOG1310 WD40 repeat protein [G 99.7 5.7E-16 1.2E-20 130.9 14.7 226 12-271 42-311 (758)
207 KOG1272 WD40-repeat-containing 99.7 1.3E-16 2.8E-21 132.2 10.5 221 70-293 133-353 (545)
208 KOG1188 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 120.5 16.1 248 12-262 62-345 (376)
209 KOG1517 Guanine nucleotide bin 99.7 3.6E-15 7.8E-20 134.8 19.2 243 21-266 1110-1384(1387)
210 PRK03629 tolB translocation pr 99.7 3.8E-14 8.2E-19 124.7 24.3 222 14-243 192-427 (429)
211 KOG4497 Uncharacterized conser 99.7 9.8E-15 2.1E-19 116.4 18.1 268 25-299 13-386 (447)
212 KOG1272 WD40-repeat-containing 99.7 5.8E-16 1.3E-20 128.3 11.4 256 22-288 131-393 (545)
213 PF08662 eIF2A: Eukaryotic tra 99.7 3.8E-14 8.3E-19 110.6 20.0 157 109-271 6-186 (194)
214 KOG1524 WD40 repeat-containing 99.7 6.1E-15 1.3E-19 124.5 16.3 228 64-298 12-250 (737)
215 PRK02889 tolB translocation pr 99.7 2.5E-13 5.5E-18 119.6 27.2 218 62-285 191-425 (427)
216 KOG1523 Actin-related protein 99.7 7.7E-14 1.7E-18 110.8 21.1 223 20-244 10-260 (361)
217 PRK04922 tolB translocation pr 99.6 1.4E-13 3E-18 121.5 25.2 233 42-284 184-432 (433)
218 PRK04922 tolB translocation pr 99.6 8.4E-14 1.8E-18 122.9 23.3 223 13-243 196-432 (433)
219 PRK05137 tolB translocation pr 99.6 5.6E-13 1.2E-17 117.9 28.0 234 42-285 182-433 (435)
220 KOG1445 Tumor-specific antigen 99.6 2.8E-15 6.2E-20 128.8 12.7 202 20-221 627-844 (1012)
221 PRK02889 tolB translocation pr 99.6 1.3E-13 2.9E-18 121.3 23.5 206 89-297 176-393 (427)
222 KOG2321 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 118.8 19.8 239 64-311 49-301 (703)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 3.9E-14 8.4E-19 119.6 17.8 201 30-243 183-384 (636)
224 KOG0322 G-protein beta subunit 99.6 1.2E-14 2.6E-19 112.5 13.5 237 18-262 54-322 (323)
225 KOG1523 Actin-related protein 99.6 2.2E-14 4.8E-19 113.8 14.8 194 108-301 10-233 (361)
226 KOG0649 WD40 repeat protein [G 99.6 1E-13 2.2E-18 106.3 17.8 158 112-272 14-195 (325)
227 PRK05137 tolB translocation pr 99.6 4E-13 8.7E-18 118.8 24.2 222 13-243 194-432 (435)
228 KOG1240 Protein kinase contain 99.6 2.5E-13 5.4E-18 124.8 23.1 215 58-272 1040-1282(1431)
229 PF02239 Cytochrom_D1: Cytochr 99.6 5.2E-12 1.1E-16 108.3 29.5 244 23-272 39-356 (369)
230 KOG0644 Uncharacterized conser 99.6 2.4E-15 5.3E-20 132.8 9.1 243 12-268 224-473 (1113)
231 PF10282 Lactonase: Lactonase, 99.6 3.9E-11 8.5E-16 102.8 34.8 269 35-312 2-322 (345)
232 KOG4227 WD40 repeat protein [G 99.6 2.7E-13 6E-18 110.6 20.1 239 18-264 103-388 (609)
233 KOG2139 WD40 repeat protein [G 99.6 1.5E-12 3.2E-17 105.3 23.5 223 20-265 140-385 (445)
234 KOG3881 Uncharacterized conser 99.6 3.6E-13 7.9E-18 109.7 19.4 220 20-243 105-341 (412)
235 PF10282 Lactonase: Lactonase, 99.6 1.5E-10 3.3E-15 99.2 34.8 262 21-282 37-345 (345)
236 KOG2139 WD40 repeat protein [G 99.6 1.8E-12 3.9E-17 104.8 21.0 267 21-313 99-384 (445)
237 KOG2041 WD40 repeat protein [G 99.5 1.1E-12 2.4E-17 114.7 19.9 276 20-299 14-332 (1189)
238 KOG0974 WD-repeat protein WDR6 99.5 9.7E-13 2.1E-17 119.2 18.9 188 114-312 93-288 (967)
239 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.3E-16 107.7 27.1 206 89-297 170-387 (417)
240 KOG1354 Serine/threonine prote 99.5 8.1E-12 1.8E-16 100.5 21.3 244 20-265 25-361 (433)
241 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.3E-16 109.4 23.7 201 13-220 182-396 (417)
242 KOG1310 WD40 repeat protein [G 99.5 2.9E-13 6.3E-18 114.8 12.3 170 60-261 44-229 (758)
243 TIGR02658 TTQ_MADH_Hv methylam 99.5 8.6E-10 1.9E-14 92.8 32.6 240 42-293 27-318 (352)
244 PRK01029 tolB translocation pr 99.5 5.4E-11 1.2E-15 104.5 26.7 223 62-285 180-425 (428)
245 PRK01029 tolB translocation pr 99.5 2.7E-11 5.9E-16 106.4 24.7 207 89-295 165-391 (428)
246 PRK04792 tolB translocation pr 99.5 1.8E-11 3.8E-16 108.4 22.4 221 15-243 212-446 (448)
247 PRK04792 tolB translocation pr 99.5 8.9E-11 1.9E-15 103.9 26.7 220 62-285 213-447 (448)
248 PRK00178 tolB translocation pr 99.5 1.2E-10 2.6E-15 103.1 27.5 219 62-285 194-428 (430)
249 KOG1334 WD40 repeat protein [G 99.5 3.6E-13 7.7E-18 112.7 10.3 250 16-266 181-469 (559)
250 PRK00178 tolB translocation pr 99.5 1E-10 2.2E-15 103.6 26.5 204 90-296 180-395 (430)
251 TIGR02658 TTQ_MADH_Hv methylam 99.5 2E-09 4.3E-14 90.6 31.9 234 28-272 53-339 (352)
252 KOG2315 Predicted translation 99.4 2.1E-10 4.5E-15 98.0 23.7 274 22-311 36-389 (566)
253 KOG4547 WD40 repeat-containing 99.4 5.8E-11 1.3E-15 101.9 19.9 187 76-264 2-221 (541)
254 KOG1409 Uncharacterized conser 99.4 3E-11 6.4E-16 97.3 16.7 247 13-264 17-271 (404)
255 KOG0974 WD-repeat protein WDR6 99.4 1.7E-10 3.7E-15 105.0 23.5 117 15-138 170-288 (967)
256 KOG4190 Uncharacterized conser 99.4 3.4E-12 7.5E-17 108.8 11.1 288 3-296 718-1028(1034)
257 KOG2314 Translation initiation 99.4 7.9E-10 1.7E-14 94.5 23.5 275 23-312 213-525 (698)
258 KOG2315 Predicted translation 99.4 6.3E-10 1.4E-14 95.1 22.4 250 24-285 129-411 (566)
259 COG2706 3-carboxymuconate cycl 99.3 4.9E-08 1.1E-12 79.7 30.6 264 41-313 15-322 (346)
260 PLN02919 haloacid dehalogenase 99.3 2.3E-08 4.9E-13 96.8 32.4 241 24-267 571-892 (1057)
261 KOG4547 WD40 repeat-containing 99.3 4E-10 8.8E-15 96.8 16.8 166 118-285 3-195 (541)
262 KOG0280 Uncharacterized conser 99.3 1.3E-09 2.7E-14 86.3 18.0 164 122-285 87-264 (339)
263 PLN02919 haloacid dehalogenase 99.3 2.9E-08 6.3E-13 96.1 31.2 233 70-312 571-888 (1057)
264 KOG1064 RAVE (regulator of V-A 99.3 7.1E-11 1.5E-15 112.8 12.6 197 62-273 2204-2408(2439)
265 COG2706 3-carboxymuconate cycl 99.2 3.1E-07 6.8E-12 75.1 31.5 264 16-283 35-345 (346)
266 PRK04043 tolB translocation pr 99.2 3.1E-08 6.7E-13 86.7 26.7 201 90-296 170-389 (419)
267 KOG1409 Uncharacterized conser 99.2 1.5E-09 3.3E-14 87.6 16.8 241 61-313 19-271 (404)
268 KOG0280 Uncharacterized conser 99.2 8.7E-10 1.9E-14 87.2 14.6 185 23-210 124-320 (339)
269 KOG0882 Cyclophilin-related pe 99.2 8.9E-10 1.9E-14 91.9 14.2 251 18-272 7-314 (558)
270 PF08450 SGL: SMP-30/Gluconola 99.2 6.4E-07 1.4E-11 73.2 30.4 213 71-290 4-241 (246)
271 TIGR03300 assembly_YfgL outer 99.2 9.5E-08 2E-12 83.2 26.6 253 32-299 105-374 (377)
272 KOG1354 Serine/threonine prote 99.1 7.3E-09 1.6E-13 83.8 17.2 235 66-311 25-358 (433)
273 KOG3914 WD repeat protein WDR4 99.1 9.8E-10 2.1E-14 90.3 12.4 157 114-272 68-232 (390)
274 COG5354 Uncharacterized protei 99.1 1.2E-07 2.6E-12 80.7 24.8 278 20-311 71-394 (561)
275 PRK04043 tolB translocation pr 99.1 2.4E-07 5.1E-12 81.2 27.6 207 68-280 189-417 (419)
276 KOG2314 Translation initiation 99.1 1.5E-07 3.2E-12 81.0 24.1 282 22-312 251-573 (698)
277 COG4946 Uncharacterized protei 99.1 1.4E-07 3.1E-12 79.7 23.6 239 4-251 248-506 (668)
278 PF04762 IKI3: IKI3 family; I 99.1 1E-06 2.3E-11 84.1 31.4 273 20-297 75-449 (928)
279 TIGR03300 assembly_YfgL outer 99.1 3E-07 6.6E-12 80.1 25.4 257 31-301 64-335 (377)
280 KOG2041 WD40 repeat protein [G 99.0 3.7E-08 7.9E-13 87.1 18.9 237 8-251 59-326 (1189)
281 COG5354 Uncharacterized protei 99.0 2.5E-07 5.4E-12 78.8 22.9 274 19-310 31-346 (561)
282 KOG4190 Uncharacterized conser 99.0 7.6E-10 1.6E-14 94.8 7.8 205 61-270 730-955 (1034)
283 PF04762 IKI3: IKI3 family; I 99.0 7.3E-07 1.6E-11 85.2 28.5 234 65-313 74-334 (928)
284 KOG4532 WD40-like repeat conta 99.0 2E-07 4.3E-12 73.2 20.2 192 33-230 85-291 (344)
285 KOG1064 RAVE (regulator of V-A 99.0 2.1E-09 4.5E-14 103.2 11.0 210 81-313 2182-2399(2439)
286 PF00400 WD40: WD domain, G-be 99.0 8.1E-10 1.7E-14 62.3 5.1 37 12-48 3-39 (39)
287 KOG0309 Conserved WD40 repeat- 99.0 6.9E-09 1.5E-13 91.8 12.8 240 22-312 69-339 (1081)
288 COG5170 CDC55 Serine/threonine 99.0 6E-08 1.3E-12 77.7 15.6 241 19-261 25-365 (460)
289 PF13360 PQQ_2: PQQ-like domai 99.0 1.7E-06 3.8E-11 70.1 24.8 220 41-270 2-237 (238)
290 PF07433 DUF1513: Protein of u 98.9 5.5E-06 1.2E-10 67.8 26.8 222 70-295 8-277 (305)
291 KOG4532 WD40-like repeat conta 98.9 6.7E-07 1.5E-11 70.3 19.7 213 79-293 84-321 (344)
292 PF08450 SGL: SMP-30/Gluconola 98.9 1.5E-05 3.3E-10 65.0 30.1 214 25-249 4-241 (246)
293 COG4946 Uncharacterized protei 98.9 2.1E-06 4.5E-11 72.8 23.9 172 119-293 331-507 (668)
294 KOG1912 WD40 repeat protein [G 98.9 6.7E-07 1.4E-11 80.0 21.6 204 13-220 48-303 (1062)
295 PF13360 PQQ_2: PQQ-like domai 98.9 3.8E-06 8.2E-11 68.2 24.7 205 88-298 2-224 (238)
296 KOG0882 Cyclophilin-related pe 98.9 7.1E-08 1.5E-12 80.8 14.3 249 64-314 7-318 (558)
297 PF00400 WD40: WD domain, G-be 98.9 1.3E-08 2.9E-13 57.2 6.4 39 223-261 1-39 (39)
298 KOG2695 WD40 repeat protein [G 98.8 2.2E-08 4.9E-13 81.1 9.4 159 124-284 228-402 (425)
299 KOG3914 WD repeat protein WDR4 98.8 1.8E-07 4E-12 77.2 13.6 156 72-229 68-231 (390)
300 PF15492 Nbas_N: Neuroblastoma 98.8 2.5E-06 5.4E-11 68.0 19.1 201 22-234 45-272 (282)
301 KOG1832 HIV-1 Vpr-binding prot 98.8 1.1E-08 2.4E-13 92.3 5.4 259 14-292 1095-1377(1516)
302 PRK11138 outer membrane biogen 98.7 2.3E-05 4.9E-10 68.8 24.9 252 32-299 120-389 (394)
303 PF15492 Nbas_N: Neuroblastoma 98.7 8.1E-05 1.8E-09 59.5 25.9 233 26-272 3-268 (282)
304 COG3391 Uncharacterized conser 98.6 0.00023 5.1E-09 61.9 29.2 217 70-286 77-310 (381)
305 KOG4714 Nucleoporin [Nuclear s 98.6 1.6E-07 3.5E-12 73.4 8.2 193 69-264 39-255 (319)
306 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.4E-12 77.2 7.5 134 19-152 251-390 (425)
307 KOG1645 RING-finger-containing 98.6 7.6E-06 1.6E-10 68.1 17.5 240 14-262 187-460 (463)
308 KOG2114 Vacuolar assembly/sort 98.6 2E-05 4.3E-10 71.7 21.4 201 22-230 27-252 (933)
309 COG5170 CDC55 Serine/threonine 98.6 1.7E-06 3.7E-11 69.6 12.5 194 110-313 28-310 (460)
310 KOG1645 RING-finger-containing 98.6 8.3E-06 1.8E-10 67.8 16.8 81 61-141 188-269 (463)
311 PF11768 DUF3312: Protein of u 98.5 6.2E-06 1.3E-10 72.1 16.0 75 189-265 257-331 (545)
312 KOG1920 IkappaB kinase complex 98.5 8.3E-05 1.8E-09 70.2 23.2 236 67-313 69-323 (1265)
313 PRK02888 nitrous-oxide reducta 98.5 4.7E-05 1E-09 68.3 20.8 171 88-264 214-405 (635)
314 KOG0309 Conserved WD40 repeat- 98.5 8.6E-07 1.9E-11 78.9 9.8 197 107-313 23-233 (1081)
315 KOG2066 Vacuolar assembly/sort 98.5 3E-06 6.6E-11 76.2 13.0 132 160-312 48-187 (846)
316 KOG1832 HIV-1 Vpr-binding prot 98.5 1.4E-07 3.1E-12 85.4 4.6 212 62-289 1097-1316(1516)
317 KOG1275 PAB-dependent poly(A) 98.5 4.9E-06 1.1E-10 75.9 13.8 174 119-296 146-334 (1118)
318 KOG1275 PAB-dependent poly(A) 98.5 8.3E-06 1.8E-10 74.5 14.9 181 31-220 146-341 (1118)
319 KOG1920 IkappaB kinase complex 98.4 0.00021 4.5E-09 67.7 24.1 196 21-224 69-325 (1265)
320 PRK11138 outer membrane biogen 98.4 0.00022 4.8E-09 62.6 22.9 257 32-300 69-349 (394)
321 PF07433 DUF1513: Protein of u 98.4 0.00041 8.8E-09 57.1 22.4 189 114-311 10-246 (305)
322 KOG4714 Nucleoporin [Nuclear s 98.3 3.2E-06 6.9E-11 66.3 8.3 74 22-98 181-255 (319)
323 COG3386 Gluconolactonase [Carb 98.3 0.0011 2.3E-08 55.6 23.9 217 73-295 31-276 (307)
324 KOG2066 Vacuolar assembly/sort 98.3 3.3E-05 7.1E-10 69.8 15.5 181 67-263 40-233 (846)
325 KOG1008 Uncharacterized conser 98.3 2.3E-07 5.1E-12 81.2 2.1 200 20-221 56-275 (783)
326 cd00216 PQQ_DH Dehydrogenases 98.3 0.00076 1.7E-08 60.8 24.4 259 32-300 61-420 (488)
327 PF04053 Coatomer_WDAD: Coatom 98.3 0.00036 7.7E-09 61.5 20.9 175 110-300 34-220 (443)
328 PRK02888 nitrous-oxide reducta 98.3 0.00021 4.5E-09 64.3 19.4 133 116-252 284-450 (635)
329 KOG2114 Vacuolar assembly/sort 98.3 0.0005 1.1E-08 63.0 21.7 196 73-272 30-252 (933)
330 PF11768 DUF3312: Protein of u 98.3 0.0011 2.3E-08 58.5 23.1 115 106-222 203-330 (545)
331 PF08596 Lgl_C: Lethal giant l 98.3 0.0013 2.8E-08 57.2 23.7 252 22-295 3-327 (395)
332 PF04053 Coatomer_WDAD: Coatom 98.2 0.0011 2.3E-08 58.5 22.5 228 11-263 23-262 (443)
333 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0029 6.2E-08 54.7 24.9 257 29-293 1-346 (353)
334 PF06977 SdiA-regulated: SdiA- 98.2 0.0019 4.2E-08 52.2 23.8 197 60-259 15-246 (248)
335 PF03178 CPSF_A: CPSF A subuni 98.2 0.0019 4.1E-08 55.0 23.3 208 89-299 2-260 (321)
336 KOG4640 Anaphase-promoting com 98.2 1.2E-05 2.7E-10 70.6 9.4 93 191-284 20-115 (665)
337 COG3391 Uncharacterized conser 98.2 0.0039 8.5E-08 54.4 25.0 216 24-245 77-310 (381)
338 COG0823 TolB Periplasmic compo 98.1 0.00026 5.7E-09 62.1 17.1 183 112-296 196-391 (425)
339 COG0823 TolB Periplasmic compo 98.1 0.0012 2.6E-08 57.9 19.4 183 69-254 195-390 (425)
340 PF06977 SdiA-regulated: SdiA- 98.0 0.0032 6.9E-08 51.0 19.9 182 108-291 21-238 (248)
341 smart00320 WD40 WD40 repeats. 98.0 1.4E-05 3E-10 43.7 4.7 36 13-48 5-40 (40)
342 PF06433 Me-amine-dh_H: Methyl 98.0 0.0071 1.5E-07 50.7 26.9 243 25-273 40-330 (342)
343 cd00216 PQQ_DH Dehydrogenases 98.0 0.013 2.9E-07 52.9 29.3 248 33-289 111-452 (488)
344 KOG1912 WD40 repeat protein [G 97.9 0.00023 4.9E-09 64.4 13.0 131 152-284 18-165 (1062)
345 KOG3617 WD40 and TPR repeat-co 97.9 0.00019 4.2E-09 65.6 11.3 107 114-221 21-131 (1416)
346 PF06433 Me-amine-dh_H: Methyl 97.9 0.012 2.7E-07 49.2 21.9 197 89-290 17-305 (342)
347 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.004 8.6E-08 49.6 16.7 110 120-230 23-132 (354)
348 KOG4640 Anaphase-promoting com 97.8 9.7E-05 2.1E-09 65.2 8.4 93 150-243 21-115 (665)
349 KOG3617 WD40 and TPR repeat-co 97.8 0.00057 1.2E-08 62.6 13.1 71 22-97 61-131 (1416)
350 smart00320 WD40 WD40 repeats. 97.8 0.00012 2.7E-09 39.7 5.9 38 224-261 3-40 (40)
351 PF00780 CNH: CNH domain; Int 97.8 0.016 3.4E-07 48.1 26.2 225 30-273 5-265 (275)
352 KOG3621 WD40 repeat-containing 97.7 0.00049 1.1E-08 61.7 11.6 179 115-297 40-238 (726)
353 KOG3621 WD40 repeat-containing 97.7 0.00051 1.1E-08 61.5 10.4 102 79-180 45-155 (726)
354 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.023 5E-07 45.4 19.5 112 76-188 20-132 (354)
355 PF08553 VID27: VID27 cytoplas 97.6 0.0026 5.7E-08 59.4 14.7 141 78-220 492-646 (794)
356 PF04841 Vps16_N: Vps16, N-ter 97.6 0.049 1.1E-06 48.0 26.6 190 90-288 62-273 (410)
357 PF08553 VID27: VID27 cytoplas 97.5 0.0036 7.8E-08 58.6 14.2 140 120-261 493-645 (794)
358 PF04841 Vps16_N: Vps16, N-ter 97.5 0.07 1.5E-06 47.1 24.7 187 43-245 62-271 (410)
359 PF03178 CPSF_A: CPSF A subuni 97.4 0.06 1.3E-06 45.8 24.6 168 89-260 62-262 (321)
360 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.018 4E-07 39.8 14.5 101 69-174 2-109 (111)
361 PF02897 Peptidase_S9_N: Proly 97.4 0.084 1.8E-06 46.7 28.4 242 22-268 125-409 (414)
362 KOG1008 Uncharacterized conser 97.3 5.5E-05 1.2E-09 66.8 0.1 184 119-312 69-275 (783)
363 KOG2395 Protein involved in va 97.3 0.012 2.5E-07 51.7 13.8 138 81-220 348-499 (644)
364 PF14583 Pectate_lyase22: Olig 97.3 0.093 2E-06 45.0 27.9 262 27-295 42-371 (386)
365 PF05096 Glu_cyclase_2: Glutam 97.3 0.069 1.5E-06 43.3 23.6 187 102-293 36-249 (264)
366 KOG2444 WD40 repeat protein [G 97.2 0.00073 1.6E-08 52.5 5.4 105 160-264 69-178 (238)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.17 3.7E-06 46.2 27.2 238 33-276 121-503 (527)
368 KOG2395 Protein involved in va 97.2 0.022 4.8E-07 50.0 14.2 143 116-261 341-498 (644)
369 PRK13616 lipoprotein LpqB; Pro 97.2 0.0075 1.6E-07 55.4 12.1 133 170-308 328-485 (591)
370 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.045 9.7E-07 37.9 13.2 92 199-296 10-106 (111)
371 KOG2444 WD40 repeat protein [G 97.0 0.0016 3.4E-08 50.7 5.6 141 81-223 32-179 (238)
372 COG3386 Gluconolactonase [Carb 97.0 0.16 3.4E-06 42.8 22.7 214 27-251 31-273 (307)
373 PF08596 Lgl_C: Lethal giant l 96.9 0.078 1.7E-06 46.3 15.9 227 18-261 84-336 (395)
374 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.0081 1.8E-07 51.9 9.8 95 200-297 1-123 (353)
375 PF14870 PSII_BNR: Photosynthe 96.9 0.22 4.7E-06 41.8 24.1 105 191-296 144-254 (302)
376 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0045 9.7E-08 35.8 5.0 33 191-224 11-43 (47)
377 PF05096 Glu_cyclase_2: Glutam 96.8 0.22 4.8E-06 40.5 23.7 178 69-251 47-249 (264)
378 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0051 1.1E-07 35.5 4.8 35 232-267 10-44 (47)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.46 1E-05 43.5 28.9 190 32-226 69-338 (527)
380 KOG4441 Proteins containing BT 96.7 0.48 1E-05 43.7 19.6 224 79-312 285-546 (571)
381 PRK13616 lipoprotein LpqB; Pro 96.7 0.28 6E-06 45.4 17.9 188 67-260 350-565 (591)
382 PHA02713 hypothetical protein; 96.7 0.23 5E-06 45.8 17.5 182 79-264 304-534 (557)
383 KOG2079 Vacuolar assembly/sort 96.7 0.012 2.6E-07 55.7 9.1 95 162-256 100-198 (1206)
384 KOG2079 Vacuolar assembly/sort 96.6 0.0073 1.6E-07 57.1 7.3 98 203-300 99-201 (1206)
385 TIGR02604 Piru_Ver_Nterm putat 96.5 0.29 6.3E-06 42.6 16.1 142 152-296 16-205 (367)
386 KOG4441 Proteins containing BT 96.5 0.57 1.2E-05 43.3 18.6 225 29-264 282-547 (571)
387 PF14870 PSII_BNR: Photosynthe 96.2 0.65 1.4E-05 39.0 30.1 261 20-293 16-294 (302)
388 PF10647 Gmad1: Lipoprotein Lp 96.1 0.58 1.3E-05 38.3 17.3 144 151-297 25-188 (253)
389 PHA02713 hypothetical protein; 96.1 0.28 6E-06 45.3 14.6 143 79-223 352-535 (557)
390 KOG3630 Nuclear pore complex, 96.1 0.19 4.1E-06 48.4 13.2 138 111-249 103-259 (1405)
391 PF05694 SBP56: 56kDa selenium 96.0 0.98 2.1E-05 39.5 22.1 227 21-251 65-391 (461)
392 PF10647 Gmad1: Lipoprotein Lp 96.0 0.49 1.1E-05 38.8 14.1 101 193-296 25-133 (253)
393 PF02897 Peptidase_S9_N: Proly 95.9 1.1 2.4E-05 39.7 28.5 220 69-288 126-384 (414)
394 TIGR03074 PQQ_membr_DH membran 95.8 1.9 4.2E-05 41.2 21.6 193 80-272 195-486 (764)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 1.4 2.9E-05 38.8 26.8 80 193-272 309-407 (415)
396 COG3204 Uncharacterized protei 95.7 0.98 2.1E-05 37.2 17.9 164 108-272 85-271 (316)
397 KOG1897 Damage-specific DNA bi 95.4 2.7 5.9E-05 40.4 27.0 283 22-313 489-816 (1096)
398 PF00780 CNH: CNH domain; Int 95.2 1.5 3.2E-05 36.3 25.5 141 79-225 7-169 (275)
399 KOG4499 Ca2+-binding protein R 95.2 1.2 2.7E-05 35.4 19.9 160 151-312 110-299 (310)
400 PF12234 Rav1p_C: RAVE protein 95.2 0.98 2.1E-05 41.8 14.2 102 194-295 32-149 (631)
401 PF10313 DUF2415: Uncharacteri 95.2 0.12 2.6E-06 28.9 5.3 32 192-223 1-35 (43)
402 PHA03098 kelch-like protein; P 94.9 3.1 6.7E-05 38.3 17.2 188 118-313 293-512 (534)
403 PHA03098 kelch-like protein; P 94.9 2.4 5.2E-05 39.0 16.3 182 79-264 295-512 (534)
404 PF10313 DUF2415: Uncharacteri 94.4 0.28 6.1E-06 27.5 5.6 33 67-99 1-35 (43)
405 PF14781 BBS2_N: Ciliary BBSom 94.4 1.3 2.9E-05 31.9 10.8 85 198-283 5-101 (136)
406 KOG1897 Damage-specific DNA bi 94.3 5.3 0.00011 38.6 27.6 192 104-299 710-937 (1096)
407 PHA02790 Kelch-like protein; P 94.3 3.9 8.5E-05 37.1 16.1 139 79-222 319-471 (480)
408 KOG1916 Nuclear protein, conta 94.2 0.026 5.7E-07 52.7 2.0 82 151-233 182-282 (1283)
409 PF12234 Rav1p_C: RAVE protein 94.2 4.4 9.5E-05 37.7 15.9 57 81-137 43-103 (631)
410 COG3204 Uncharacterized protei 94.0 2.9 6.4E-05 34.5 20.3 160 62-222 81-264 (316)
411 PRK13684 Ycf48-like protein; P 94.0 3.5 7.6E-05 35.4 23.4 106 191-298 172-282 (334)
412 PF11715 Nup160: Nucleoporin N 93.7 0.57 1.2E-05 43.2 9.7 71 201-271 156-256 (547)
413 PF10168 Nup88: Nuclear pore c 93.7 6.7 0.00014 37.4 18.0 78 22-100 86-182 (717)
414 PF15390 DUF4613: Domain of un 93.5 3.8 8.3E-05 37.2 13.6 101 192-293 57-174 (671)
415 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.74 1.6E-05 25.4 6.2 40 243-282 1-41 (42)
416 COG3823 Glutamine cyclotransfe 93.0 3.6 7.8E-05 32.3 14.7 177 119-299 55-254 (262)
417 COG5167 VID27 Protein involved 92.9 3.7 7.9E-05 36.7 12.5 143 117-262 476-631 (776)
418 PF14583 Pectate_lyase22: Olig 92.8 5.9 0.00013 34.3 13.8 152 156-312 42-222 (386)
419 PF10168 Nup88: Nuclear pore c 92.7 8.1 0.00018 36.9 15.5 29 147-175 82-110 (717)
420 PRK10115 protease 2; Provision 92.7 9.5 0.00021 36.4 30.2 235 22-266 128-397 (686)
421 PF07995 GSDH: Glucose / Sorbo 92.2 4.4 9.4E-05 34.7 12.2 103 193-297 3-136 (331)
422 KOG3630 Nuclear pore complex, 92.0 1 2.2E-05 43.9 8.5 146 22-167 102-261 (1405)
423 KOG2280 Vacuolar assembly/sort 91.9 11 0.00024 35.4 16.1 180 89-272 64-255 (829)
424 KOG4499 Ca2+-binding protein R 91.9 5.5 0.00012 31.9 17.4 90 153-242 161-262 (310)
425 PF15390 DUF4613: Domain of un 91.3 12 0.00025 34.3 14.4 145 21-177 20-184 (671)
426 COG3490 Uncharacterized protei 91.2 7.5 0.00016 32.1 15.5 93 198-290 120-241 (366)
427 KOG4460 Nuclear pore complex, 91.0 4.1 8.8E-05 36.5 10.6 91 113-225 108-202 (741)
428 COG3823 Glutamine cyclotransfe 90.9 6.6 0.00014 30.9 14.2 100 79-180 56-159 (262)
429 PF07569 Hira: TUP1-like enhan 90.6 1.3 2.8E-05 35.4 7.0 60 240-300 17-91 (219)
430 PF14761 HPS3_N: Hermansky-Pud 90.4 7.4 0.00016 30.7 11.3 108 204-312 29-178 (215)
431 PF14761 HPS3_N: Hermansky-Pud 90.4 3.6 7.8E-05 32.4 9.0 62 246-309 29-92 (215)
432 TIGR02276 beta_rpt_yvtn 40-res 90.3 1.5 3.3E-05 24.1 5.4 40 77-116 2-41 (42)
433 PF08728 CRT10: CRT10; InterP 90.2 3.6 7.8E-05 38.7 10.3 102 160-262 113-245 (717)
434 PF07676 PD40: WD40-like Beta 90.2 1.6 3.5E-05 23.7 5.3 32 229-260 4-38 (39)
435 PF11715 Nup160: Nucleoporin N 90.0 2.5 5.4E-05 39.0 9.3 77 30-106 156-257 (547)
436 COG5167 VID27 Protein involved 90.0 14 0.00031 33.2 13.5 142 77-221 477-632 (776)
437 PHA02790 Kelch-like protein; P 90.0 15 0.00032 33.4 16.8 140 79-224 272-426 (480)
438 KOG2247 WD40 repeat-containing 89.6 0.052 1.1E-06 47.4 -1.8 146 70-219 38-186 (615)
439 PF07569 Hira: TUP1-like enhan 89.5 3.1 6.7E-05 33.2 8.3 64 199-263 18-95 (219)
440 PF14727 PHTB1_N: PTHB1 N-term 89.2 15 0.00033 32.5 30.7 146 32-178 37-203 (418)
441 KOG2247 WD40 repeat-containing 89.2 0.033 7.2E-07 48.5 -3.2 153 154-309 39-195 (615)
442 TIGR03606 non_repeat_PQQ dehyd 88.9 17 0.00037 32.6 14.0 105 192-296 30-167 (454)
443 COG5276 Uncharacterized conser 88.4 13 0.00029 30.9 21.3 143 120-266 96-244 (370)
444 PF12657 TFIIIC_delta: Transcr 88.4 5.8 0.00012 30.3 8.9 31 192-222 86-122 (173)
445 PF12657 TFIIIC_delta: Transcr 88.3 5 0.00011 30.7 8.5 30 68-97 87-121 (173)
446 PF07676 PD40: WD40-like Beta 88.1 2.6 5.7E-05 22.8 5.1 28 191-218 8-38 (39)
447 KOG2377 Uncharacterized conser 88.0 9.2 0.0002 33.8 10.4 102 189-292 64-171 (657)
448 PF08728 CRT10: CRT10; InterP 87.8 11 0.00024 35.6 11.5 103 118-220 112-245 (717)
449 KOG4659 Uncharacterized conser 87.7 34 0.00074 34.7 19.1 18 237-254 596-613 (1899)
450 PRK13684 Ycf48-like protein; P 87.5 17 0.00038 31.1 25.1 264 20-297 45-324 (334)
451 COG3490 Uncharacterized protei 86.7 17 0.00037 30.2 20.3 182 113-296 72-301 (366)
452 PF01011 PQQ: PQQ enzyme repea 86.4 3.6 7.9E-05 22.2 5.3 29 248-276 3-31 (38)
453 smart00564 PQQ beta-propeller 85.9 2.4 5.2E-05 21.8 4.0 25 247-271 8-32 (33)
454 KOG2377 Uncharacterized conser 85.1 21 0.00046 31.7 11.1 100 150-251 67-171 (657)
455 TIGR02604 Piru_Ver_Nterm putat 85.0 25 0.00055 30.6 17.8 103 21-127 14-142 (367)
456 TIGR03074 PQQ_membr_DH membran 84.7 40 0.00087 32.7 23.5 149 80-228 261-484 (764)
457 KOG3616 Selective LIM binding 84.5 38 0.00083 32.2 15.9 36 20-55 14-49 (1636)
458 COG4590 ABC-type uncharacteriz 84.0 16 0.00034 32.4 9.9 148 114-264 226-387 (733)
459 PF14727 PHTB1_N: PTHB1 N-term 83.8 31 0.00067 30.7 26.9 242 20-264 71-361 (418)
460 KOG1916 Nuclear protein, conta 83.3 1.2 2.6E-05 42.4 3.2 79 23-137 186-264 (1283)
461 KOG4460 Nuclear pore complex, 83.1 7.8 0.00017 34.8 7.9 78 22-99 105-200 (741)
462 KOG1900 Nuclear pore complex, 82.7 35 0.00077 34.5 12.7 136 86-222 96-273 (1311)
463 PF11635 Med16: Mediator compl 82.2 51 0.0011 32.0 16.9 83 111-216 262-345 (753)
464 PF07250 Glyoxal_oxid_N: Glyox 81.7 27 0.00058 28.4 12.7 109 197-306 72-201 (243)
465 PF14655 RAB3GAP2_N: Rab3 GTPa 81.6 38 0.00082 30.1 11.7 88 16-107 303-408 (415)
466 PF10395 Utp8: Utp8 family; I 78.6 61 0.0013 30.6 15.6 155 20-179 129-305 (670)
467 PF07995 GSDH: Glucose / Sorbo 78.3 43 0.00092 28.7 24.1 67 192-258 253-330 (331)
468 PF01436 NHL: NHL repeat; Int 78.0 6.9 0.00015 19.5 3.9 25 194-218 4-28 (28)
469 PF03088 Str_synth: Strictosid 75.3 22 0.00047 23.8 7.6 44 251-294 33-76 (89)
470 PLN00033 photosystem II stabil 75.2 59 0.0013 28.8 26.2 142 112-258 242-394 (398)
471 TIGR03118 PEPCTERM_chp_1 conse 74.7 51 0.0011 27.8 25.3 220 22-243 24-307 (336)
472 PF05694 SBP56: 56kDa selenium 73.3 68 0.0015 28.6 29.8 214 80-293 88-392 (461)
473 KOG3616 Selective LIM binding 72.3 42 0.00091 32.0 9.5 69 108-178 14-82 (1636)
474 KOG1983 Tomosyn and related SN 72.0 1.2E+02 0.0025 30.7 16.2 72 190-267 197-268 (993)
475 KOG1896 mRNA cleavage and poly 70.6 1.3E+02 0.0028 30.6 13.6 136 41-180 1064-1214(1366)
476 PF05935 Arylsulfotrans: Aryls 70.2 87 0.0019 28.5 15.7 163 87-272 126-310 (477)
477 COG5290 IkappaB kinase complex 70.1 73 0.0016 30.7 10.5 31 106-136 110-140 (1243)
478 TIGR03547 muta_rot_YjhT mutatr 70.1 70 0.0015 27.4 19.8 51 79-129 64-128 (346)
479 COG1770 PtrB Protease II [Amin 69.7 15 0.00032 34.2 6.1 66 236-303 131-201 (682)
480 PF01731 Arylesterase: Arylest 68.2 32 0.0007 22.8 6.4 49 213-264 36-85 (86)
481 PF12341 DUF3639: Protein of u 67.6 14 0.0003 18.4 3.8 25 193-219 3-27 (27)
482 PF13449 Phytase-like: Esteras 66.7 82 0.0018 26.9 15.7 96 194-290 87-230 (326)
483 COG4590 ABC-type uncharacteriz 64.0 73 0.0016 28.5 8.9 153 151-313 222-387 (733)
484 PF08801 Nucleoporin_N: Nup133 63.8 1.1E+02 0.0023 27.3 15.9 30 193-222 191-220 (422)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 63.6 91 0.002 30.6 10.1 88 162-249 320-414 (912)
486 PRK14131 N-acetylneuraminic ac 63.3 1E+02 0.0022 26.9 20.4 40 90-129 107-149 (376)
487 PF03022 MRJP: Major royal jel 63.1 90 0.002 26.2 19.3 77 235-311 187-276 (287)
488 PF03088 Str_synth: Strictosid 62.9 43 0.00093 22.4 8.5 42 209-251 33-74 (89)
489 PLN02153 epithiospecifier prot 62.4 1E+02 0.0022 26.5 14.8 184 31-214 85-326 (341)
490 KOG1900 Nuclear pore complex, 61.6 1.1E+02 0.0024 31.3 10.5 93 167-262 95-204 (1311)
491 TIGR03118 PEPCTERM_chp_1 conse 58.0 59 0.0013 27.5 7.0 75 236-310 25-116 (336)
492 TIGR02171 Fb_sc_TIGR02171 Fibr 57.7 1.1E+02 0.0024 30.1 9.6 92 205-297 321-422 (912)
493 KOG1898 Splicing factor 3b, su 57.6 2.1E+02 0.0046 28.7 15.5 162 132-299 855-1043(1205)
494 PF11635 Med16: Mediator compl 57.3 32 0.00068 33.4 6.3 67 192-258 260-345 (753)
495 PF12768 Rax2: Cortical protei 57.0 1.1E+02 0.0025 25.5 8.7 93 215-307 18-126 (281)
496 KOG2280 Vacuolar assembly/sort 55.8 2E+02 0.0043 27.7 13.5 38 192-229 217-254 (829)
497 TIGR03548 mutarot_permut cycli 55.4 1.3E+02 0.0028 25.5 16.1 178 119-296 72-314 (323)
498 TIGR03606 non_repeat_PQQ dehyd 54.9 1.6E+02 0.0036 26.6 17.7 104 151-254 31-166 (454)
499 PRK10115 protease 2; Provision 54.7 2.1E+02 0.0045 27.6 28.8 200 68-272 128-354 (686)
500 PF14781 BBS2_N: Ciliary BBSom 53.7 85 0.0018 22.9 12.4 89 25-114 3-98 (136)
No 1
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-60 Score=361.69 Aligned_cols=309 Identities=57% Similarity=1.052 Sum_probs=294.1
Q ss_pred ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319 3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82 (314)
Q Consensus 3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 82 (314)
+.-++++.+..+++.+|...|.+|+|+.+|..|++|+.|+++++|+++.. .........+|.+.|.+++|+|..++++
T Consensus 3 ~t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 3 ETLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred ccccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcce
Confidence 34567888888999999999999999999999999999999999999865 3345556789999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319 83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
++++.|.+|++||.+.+++....+..++.+.++|+|+|++++++..|..|...|.++.+.+...+....+..+.|+..++
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
+|+...+.|.+.+..++..+|+..+..|+.+..||.|+|+|++||+|+.|..+.+||+....|++.+..+++||+.++||
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcc-cccccceEEeccccC
Q 021319 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK-YQADEGVFRIYGFEN 313 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~-~~~~~~~~~~~~~~~ 313 (314)
.+|++||+||+|..|.|=++.+|..++++++.++.+.|||||..++||++++|++- +..|.|++|||||.+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999987 678999999999976
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-48 Score=309.00 Aligned_cols=296 Identities=27% Similarity=0.444 Sum_probs=246.5
Q ss_pred Cccceeeeecc----ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC
Q 021319 2 GESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77 (314)
Q Consensus 2 ~~~~~~~~~~~----~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 77 (314)
||+-.+++++. ..++.||...|.||+|+|||+.||||+.||+|++||..++.+ .-..++||...|.+|+|.|-
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~---~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ---IGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc---ccccccCcccceeEEeeccc
Confidence 44445666543 356789999999999999999999999999999999876432 23368899999999999874
Q ss_pred C----CCEEEEEeCCCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcc
Q 021319 78 H----ADLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE 151 (314)
Q Consensus 78 ~----~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~ 151 (314)
+ ..+++|++.||+|+|||+..+.++.....+. .+.++.|--+ .++++|+.|++|++|+....+..+..+ +..-
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 3 4589999999999999999998888765444 4456666544 489999999999999987754433322 2222
Q ss_pred eeeE-----------EeccCC-------------------------CeEEEEcCCceEEEEeCC-CCCceeeeeecccce
Q 021319 152 VNEI-----------AWNMTG-------------------------EMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGC 194 (314)
Q Consensus 152 ~~~~-----------~~~~~~-------------------------~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i 194 (314)
++.+ +|.+.+ +.+++++++.++.+|+-. ..+++..+.+|..-|
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 3332 233333 358999999999999864 445888889999999
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-c
Q 021319 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-C 273 (314)
Q Consensus 195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~ 273 (314)
+.+.|+||++++|+++-|..|++||.++++.+.+|.+|-.+|..++|+.|.++|+|+|.|.++++|++.+.++...++ |
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988888888 7
Q ss_pred cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 274 RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 274 ~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
...|.+|.|+|+|...++||.|| ++|||
T Consensus 451 ~DEVf~vDwspDG~rV~sggkdk--------v~~lw 478 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKDK--------VLRLW 478 (480)
T ss_pred CceEEEEEecCCCceeecCCCce--------EEEee
Confidence 88999999999999999999998 67787
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-46 Score=299.24 Aligned_cols=286 Identities=24% Similarity=0.387 Sum_probs=247.1
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
...+.||.++|.|++|+|+|..|+||+.|.++|+||++++ .+....++|..-|.+++|+|++ ..|+||+.||+|+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~ 182 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIR 182 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCc-chhhccccCCeEE
Confidence 3456799999999999999999999999999999999874 3555788999999999999985 6899999999999
Q ss_pred EEeCCCCceeee-EE-ecCceEEEEEc-----cCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE
Q 021319 93 LWDARSGKCSQQ-AE-LSGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 93 iwd~~~~~~~~~-~~-~~~~~~~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (314)
+||..+|++... +. +...+.+++|. |..+.|++++.||+++|||+...+.+... -+..++.++.|--+ .++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gli 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceE
Confidence 999998876532 22 23445677775 56789999999999999999887776553 56678999998643 477
Q ss_pred EEEcCCceEEEEeCCCCCceeeeeecccceEEEEEC-----------CCCC-------------------------EEEE
Q 021319 165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID-----------PMGR-------------------------YFAV 208 (314)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~t 208 (314)
++++.|++|++|+....+....+.+|...|+.++.+ |.++ .|++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 889999999999999988889999999999999876 3344 4999
Q ss_pred eeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCC
Q 021319 209 GSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY 286 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~ 286 (314)
|+.|.++.+|+.... +++..+.+|..-|+.+.||||++++||||-|..|++|+..+|+.+..+. |-++|+.|+|+.|.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 999999999998654 4677888999999999999999999999999999999999999998887 67899999999999
Q ss_pred CeeEEEecCCcccccccceEEecccc
Q 021319 287 NLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 287 ~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
++|+++|.|+ |+|+|++.
T Consensus 422 RLlVS~SkDs--------TLKvw~V~ 439 (480)
T KOG0271|consen 422 RLLVSGSKDS--------TLKVWDVR 439 (480)
T ss_pred cEEEEcCCCc--------eEEEEEee
Confidence 9999999985 88999874
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.2e-46 Score=300.38 Aligned_cols=281 Identities=20% Similarity=0.296 Sum_probs=252.9
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEEEEeC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDA 96 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~iwd~ 96 (314)
|-..+|..+.||.|++.|+|||.+|.++||++..- .....+.||...|.++.|+|. ...-++||+.||++++|+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 44678999999999999999999999999998642 234578999999999999998 3567999999999999999
Q ss_pred CCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319 97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (314)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (314)
.+...+..++.+ ..+..++|+|+|++|++++.|.+-++||+++.+.+.. .-+...+.+++|+++|..+++++-|..-+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 887666655433 4566799999999999999999999999998765533 44677899999999999999999999999
Q ss_pred EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc-CCcEEEEecC
Q 021319 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDYIASASE 253 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~ 253 (314)
+||+++.+.+..+.+|..+|..++|+|+|..||||+.|++++|||++...++.++..|..-|+.|+|+| .|.+|+|+|.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999888999999999999999999 7899999999
Q ss_pred CceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 254 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 254 d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
|+.+++|...++.+++.+. |.+.|-+++.+|++..+++++-|+ ++|+|-
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR--------T~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR--------TIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc--------eeeecc
Confidence 9999999999999998864 678999999999999999999886 788884
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=262.76 Aligned_cols=286 Identities=16% Similarity=0.262 Sum_probs=245.9
Q ss_pred ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
-..|+|.||.+.|+++.|++|+++|+|+|.||.+.|||.-+.. +.. .++-...-|-..+|+|.+ +++++|+.|..
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~h--aipl~s~WVMtCA~sPSg-~~VAcGGLdN~ 120 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVH--AIPLPSSWVMTCAYSPSG-NFVACGGLDNK 120 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--cee--EEecCceeEEEEEECCCC-CeEEecCcCce
Confidence 3458899999999999999999999999999999999976532 222 233345668888999984 79999999999
Q ss_pred EEEEeCCCC------ceeeeEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEecc-CC
Q 021319 91 VRLWDARSG------KCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNM-TG 161 (314)
Q Consensus 91 v~iwd~~~~------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~-~~ 161 (314)
..||++.+. +..+++..+...++ +.|.+ ..+|++++.|.+..+||+++.+.+..+ -+...+.++..+| ++
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 999999755 22333444444454 55554 778999999999999999999887765 3567899999999 89
Q ss_pred CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCeEEE
Q 021319 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTI 239 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~ 239 (314)
+.|++++.|...++|+.+.....+++.+|+..|+++.|.|+|.-+++|+.|++.|+||++..+.+..|... ..+|.++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999998888777643 4589999
Q ss_pred EEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 240 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
+||-.|++|++|-.|..+.|||..+++....+. |.++|.++..+|||..+++|| ++.++|||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS--------WDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS--------WDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc--------hhHheeecC
Confidence 999999999999999999999999999888764 688999999999999999999 557999994
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=263.70 Aligned_cols=282 Identities=23% Similarity=0.379 Sum_probs=246.1
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
.+.||++.|+.+.|+|+|.+|+|||.|..|.+|++.... . -...+++|+++|..+.|.++ ++.|+|+|.|++++.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-e--N~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-E--NFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-c--ceeeeccccceeEeeeeccC-CCEEEEecCCceEEEE
Confidence 467999999999999999999999999999999975322 1 23457799999999999987 4689999999999999
Q ss_pred eCCCCceeeeEEecCceEE-EEEccCCC-EEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319 95 DARSGKCSQQAELSGENIN-ITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172 (314)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 172 (314)
|.++|++.+....+...++ +.-..-|. .+.+++.|+++++||+|+...++..+..+++.++.|.-.+...++++-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 9999999888777666554 33222343 556788899999999999988888888899999999999999999999999
Q ss_pred EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeecc----cCeEEEEEccC
Q 021319 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLE----WPVRTISFSHT 244 (314)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~----~~v~~~~~sp~ 244 (314)
+++|+++....+..+.+|...|+.+..+++|.++.+-+-|.++++||++.. .|++.+.++. .....++|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 999999988888999999999999999999999999999999999999753 4577776653 34677899999
Q ss_pred CcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319 245 GDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
+..+..|+.|..+++||...-+.+.+++ |.+.|++++|+|..++|.+++.||.+|.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999998878888887 5679999999999999999999999983
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=250.92 Aligned_cols=291 Identities=20% Similarity=0.298 Sum_probs=243.3
Q ss_pred ccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319 11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 88 (314)
...-+|.||++.|+.++-.+.+ +.+++++.|+++.+|++...... -.+...+.||+..|..+..+++ +++.+|++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEecccc
Confidence 3445689999999999998884 67999999999999999754321 1334578999999999999987 5789999999
Q ss_pred CcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccC--CCe
Q 021319 89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMT--GEM 163 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~ 163 (314)
+++|+||+.+++..+++..+ ....+++|++|.+.+++|+.|.+|++|+............ ..-+.++.|+|. ...
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999877776554 4567899999999999999999999999876554433333 345899999999 678
Q ss_pred EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 243 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp 243 (314)
++.++.|+++++|++...+....+.+|.+-++.++++|||...++|+.||.+.+||++.++++..+ .+...|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecC
Confidence 888999999999999999988899999999999999999999999999999999999999998776 4566899999999
Q ss_pred CCcEEEEecCCceEEEEECCCCCeEEEEecc----------CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 244 TGDYIASASEDLFIDISNVHTGRTVHQIPCR----------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~----------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
+...|+.+... .|+|||..+++.+..+... ....+++|+++|..|..+-.| |.+|+|.+-
T Consensus 244 nrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------~~irv~qv~ 313 (315)
T KOG0279|consen 244 NRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------NVIRVWQVA 313 (315)
T ss_pred CceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC--------CcEEEEEee
Confidence 88777755544 4999999998877665421 125688999999999877766 689999764
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.1e-40 Score=269.64 Aligned_cols=276 Identities=29% Similarity=0.476 Sum_probs=245.7
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 100 (314)
..|++|+|+.+|..||+|+.||.+|||+... . ....+..|+++|.++.|+.. +++|++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~-l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----N-LISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----h-hhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCce
Confidence 5799999999999999999999999998753 1 12257789999999999976 5799999999999999999999
Q ss_pred eeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319 101 CSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178 (314)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (314)
+.++++++... +.+.|..+ ..+++.+.|+.|.++.+....|+.+.. +..++..+.|.|.+.++++++.|+++++|..
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 98888887766 66777644 567888899999999988877776643 5678999999999999999999999999999
Q ss_pred CCCCceeeeeecccceEEEEECCCC---------CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319 179 PSLRPLDTVVAHTAGCYCIAIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 249 (314)
........+.+|+.+|+.+.|+|+| ..+++++.|++|++||+..+.++.+|.+|..||.+++|+|+|+|+|
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 8888888899999999999999875 4799999999999999999999999999999999999999999999
Q ss_pred EecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 250 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 250 s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+|+.|+.|++|+..+++.++.+...+.|..|.||-+|..|..+-.| |.+++-+|
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd--------~~vcvldl 522 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD--------GSVCVLDL 522 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC--------CCceEEEe
Confidence 9999999999999999999998878889999999999888766666 45666665
No 9
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-41 Score=270.02 Aligned_cols=296 Identities=23% Similarity=0.363 Sum_probs=242.6
Q ss_pred ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319 3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82 (314)
Q Consensus 3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 82 (314)
+..+|+++. +.+..|.++|..+.||++|++|||++.|.+.-||.+..... -....++.+|..+|.-+.|+|++ .++
T Consensus 209 ~~qip~qt~--qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryL 284 (519)
T KOG0293|consen 209 RLQIPSQTW--QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYL 284 (519)
T ss_pred cccCCchhh--hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeE
Confidence 344666544 45688999999999999999999999999999999865432 22345788999999999999986 578
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--cCcceeeEEec
Q 021319 83 ATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWN 158 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~ 158 (314)
++|+.|..+++||..+|.+....... ....+++|.|||..+++|+.|+.+..||+.... +...+ -...+.+++..
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEc
Confidence 89999999999999999887665443 456789999999999999999999999986432 11111 12458899999
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--e
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--V 236 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v 236 (314)
++|+.+++.+.+..+++|+........ +.....+++++.+|.+++++.+.=.+..+++||+...+.++++.+|+.. +
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 999999999999999999886554332 2334567999999999999999999999999999998888888888753 3
Q ss_pred EEEEEc-cCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCC-CCeeEEEecCCcccccccceEEecccc
Q 021319 237 RTISFS-HTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 237 ~~~~~s-p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
-.-||- .+..++||||+|+.|+||+..+|+++..++ |...|++|+|||. ..|||+||+| |++||||..
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--------gtIRIWg~~ 513 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--------GTIRIWGPS 513 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--------CeEEEecCC
Confidence 334565 345899999999999999999999999887 4668999999995 5789999977 799999985
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-39 Score=265.57 Aligned_cols=287 Identities=25% Similarity=0.409 Sum_probs=242.0
Q ss_pred eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEe------ec----CCCCEEEEEEcCCCCCEE
Q 021319 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIEL------RG----HADSVDQLCWDPKHADLI 82 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~------~~----h~~~v~~l~~~~~~~~~l 82 (314)
+.+. |+++|.+++|+|-.. .+++++.|-+.|+|++............+ .+ -+..|++|+|+.+ +++|
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~L 250 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLL 250 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeE
Confidence 3444 999999999999887 89999999999999986422111111111 12 2356999999976 5799
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCC
Q 021319 83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTG 161 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 161 (314)
++|+.||.+|||+............+++++++.|+..|.+|++++.|+++.+||..+.......... .+.-.+.|- ..
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~ 329 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SN 329 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cC
Confidence 9999999999999976665555567888999999999999999999999999999887665554433 233567774 44
Q ss_pred CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 241 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 241 (314)
..|+++..++.++++.....+|..++.+|.++|.++.|+|.|.+|++++.|+++++|.+.+..+...+..|...|..+.|
T Consensus 330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 56888899999999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred ccCC---------cEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 242 SHTG---------DYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 242 sp~~---------~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+|.| ..+++++.|+.|++||+..|.++..+ .|..+|++|+|+|++.++|+|+.|+ -+.||+.
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--------~V~iws~ 481 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--------CVHIWST 481 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--------eeEeccc
Confidence 9976 47999999999999999999999997 7889999999999999999999995 5667765
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.3e-41 Score=270.04 Aligned_cols=246 Identities=23% Similarity=0.311 Sum_probs=222.8
Q ss_pred ccceeeecccccEEEEEECCC--CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319 11 LHSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~--g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 88 (314)
....+|.||.+.|.++.|+|. +..++||+.||++++|+++.. ..-..+.+|...|..++|+|++ .+|+|++-|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD 282 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSG-KFLGTASFD 282 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCC-ceeeecccc
Confidence 356778999999999999998 568999999999999998742 2334688999999999999985 799999999
Q ss_pred CcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEE
Q 021319 89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (314)
.+-|+||++++.-....+.+ ..+.+++|.+||.++++|+.|..-+|||+|+.+.+... .+..++..++|+|+|-.+++
T Consensus 283 ~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEee
Confidence 99999999998755544443 45568999999999999999999999999999887654 35678999999999999999
Q ss_pred EcCCceEEEEeCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC
Q 021319 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245 (314)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 245 (314)
++.|+++++|+++..+.+.++.+|..-|+.+.|+| .|.+|+|++.|+++++|..+++.+++.+.+|+..|.+++++|++
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999999998 78899999999999999999999999999999999999999999
Q ss_pred cEEEEecCCceEEEEE
Q 021319 246 DYIASASEDLFIDISN 261 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~~ 261 (314)
++++|+|.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-38 Score=238.35 Aligned_cols=274 Identities=20% Similarity=0.323 Sum_probs=231.2
Q ss_pred ceeeeec----cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC
Q 021319 5 SIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80 (314)
Q Consensus 5 ~~~~~~~----~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 80 (314)
-|+|+.. +.+++.-..+.|+.++..||++.||+++. ..||+||+.+.... +...+.+|...|.++.|..+ +.
T Consensus 21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d-gr 96 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD-GR 96 (311)
T ss_pred eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec-Ce
Confidence 3566653 45666544678999999999999999985 78999999875433 55678899999999999876 57
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEec
Q 021319 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWN 158 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~ 158 (314)
++++||.||++||||++.-.+.+.+.....+..+..+|+...|++|..+|.|++||++.....+.. +....+.++...
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 999999999999999999888888888888888999999999999999999999999876433222 234578899999
Q ss_pred cCCCeEEEEcCCceEEEEeCCC------CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeee
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTK 231 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~ 231 (314)
++|..++++...|+.++|++.. .+|+.++..|++-+..+.+||++++||++++|.+++||+.++. +....+++
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999999999999999998753 4567778899999999999999999999999999999999988 44466778
Q ss_pred cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEE
Q 021319 232 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEW 282 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~ 282 (314)
|..-+..++||.||+||+|||.|+.+++|++..++.++++. |...-.+++.
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 88889999999999999999999999999999999888875 3334444544
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-37 Score=255.86 Aligned_cols=284 Identities=29% Similarity=0.483 Sum_probs=245.8
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
+.+.+|.++|++++|+|++++|++++.|+.+++|++.... ....+.+|...+..+.|.|++ +.+++++.|+.|++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL 77 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence 4577999999999999999999999999999999987532 234567899999999999875 68899999999999
Q ss_pred EeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCc
Q 021319 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG 171 (314)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g 171 (314)
||+.+++........ ..+.++.|.++++++++++.++.+.+||+++.+...... +...+.++.|++++..++++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 999987655555433 356789999998888888889999999999877776655 455789999999988888888799
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
.+.+|+....++...+..|...+.+++++|+++.+++++.++.|++||+..+..+..+..+..++.+++|+|++.+++++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999998888788888888899999999999999999999999999999888888887788899999999999999999
Q ss_pred cCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 252 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 252 s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
+.|+.+.+|+..+++.+..+. +...+.+++|+|+++.|++++.| |.++||+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD--------GTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC--------CeEEecC
Confidence 999999999999888877765 45689999999999999999977 5788885
No 14
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-37 Score=290.13 Aligned_cols=287 Identities=17% Similarity=0.271 Sum_probs=236.4
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC----ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG----KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
.+.+|.+.|.+++|+|+|++|+|||.|+.|+||+.+..... ......+. +...+.+++|++..+.+|++++.|++
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45569999999999999999999999999999997532110 11122233 34678999999876789999999999
Q ss_pred EEEEeCCCCceeeeEEe-cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec-cCCCeEEEE
Q 021319 91 VRLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN-MTGEMFFLT 167 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 167 (314)
|++||+.+++....+.. ...+.+++|+| ++.+|++++.|+.+++||+++.+.+........+.++.|+ +++..++++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 99999998877666543 34567899996 7899999999999999999988877776666678888885 568999999
Q ss_pred cCCceEEEEeCCCCC-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC------cEEEEEeeecccCeEEEE
Q 021319 168 TGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~~~ 240 (314)
+.+|.+++|+....+ ++..+.+|...|.++.|. ++.++++++.|+.|++||+.. ...+..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999997654 566778899999999997 678999999999999999974 356778888998999999
Q ss_pred EccCCcEEEEecCCceEEEEECCCCCeEEEEe--------------ccCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQIP--------------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 306 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--------------~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~ 306 (314)
|+|++.+||+|+.|+.|++|+...+.++..+. +...|++++|+|++.+|++|+.| |++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--------G~I 787 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--------GNI 787 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--------CcE
Confidence 99999999999999999999987665442221 12358999999999999999977 689
Q ss_pred Eeccc
Q 021319 307 RIYGF 311 (314)
Q Consensus 307 ~~~~~ 311 (314)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99975
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-37 Score=255.97 Aligned_cols=292 Identities=23% Similarity=0.342 Sum_probs=228.9
Q ss_pred ceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCCCCCE
Q 021319 5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADL 81 (314)
Q Consensus 5 ~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~ 81 (314)
++|||-.. .+..|...|+|+.|+|||++++|+|.||++.+||=.+.+ +..++. +|++.|++++|+|+. ..
T Consensus 177 GPPFKFk~--s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~ 249 (603)
T KOG0318|consen 177 GPPFKFKS--SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQ 249 (603)
T ss_pred CCCeeeee--cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ce
Confidence 46776533 346799999999999999999999999999999855432 222444 899999999999985 67
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeEEec--------------------------------------------CceEEEEEc
Q 021319 82 IATASGDKTVRLWDARSGKCSQQAELS--------------------------------------------GENINITYK 117 (314)
Q Consensus 82 l~s~~~D~~v~iwd~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~ 117 (314)
++|+|.|.++||||+.+..++++..+. ..+.+++.+
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS 329 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence 889999999999999877655432211 122346678
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCeE-------------------------------eee---------------------
Q 021319 118 PDGTHIAVGNRDDELTILDVRKFKP-------------------------------IHR--------------------- 145 (314)
Q Consensus 118 ~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------~~~--------------------- 145 (314)
+++++|++|+.||.|.-||..+... ++.
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 9999999999999999998753210 000
Q ss_pred ------------------------------eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccc
Q 021319 146 ------------------------------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAG 193 (314)
Q Consensus 146 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~ 193 (314)
+...+...+++.+|+++.+++++.|+.+++|.+.... .......|.++
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0011234567889999999999999999999987644 33456689999
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
+++++++||+.|||+|+..+.+.+||+.+.+.. ....-|...|.+++|+|+..++||||.|-.|.||++.+......++
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence 999999999999999999999999999887663 2334488899999999999999999999999999998754433332
Q ss_pred --ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 273 --CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 273 --~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
|...|++|+|- +.+.++++|.|. .+|+|+++
T Consensus 570 nAH~~gVn~v~wl-de~tvvSsG~Da--------~iK~W~v~ 602 (603)
T KOG0318|consen 570 NAHLGGVNSVAWL-DESTVVSSGQDA--------NIKVWNVT 602 (603)
T ss_pred cccccCceeEEEe-cCceEEeccCcc--------eeEEeccc
Confidence 45569999998 466778899886 58999985
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-39 Score=277.37 Aligned_cols=245 Identities=27% Similarity=0.455 Sum_probs=206.8
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC---------C------------------CceeeEEeecCCCCEEEE
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------H------------------GKVKDIELRGHADSVDQL 72 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~---------~------------------~~~~~~~~~~h~~~v~~l 72 (314)
...++|..|++|++.||.|-.|..|++|.+.+.. . .......+.||.++|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3579999999999999999999999999986310 0 011223578999999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce
Q 021319 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152 (314)
Q Consensus 73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 152 (314)
.|+|+. ++|+|+|.|+++|+|.+.+..+......+ ..++
T Consensus 458 sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH----------------------------------------~~PV 496 (707)
T KOG0263|consen 458 SFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGH----------------------------------------LAPV 496 (707)
T ss_pred eecccc-cceeeccCCcceeeeecccceeEEEecCC----------------------------------------Ccce
Confidence 999984 68999999999999999876654433221 2344
Q ss_pred eeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 232 (314)
.++.|+|.|-+|++++.|++.++|......|++.+.+|-..+.|++|+|+..|+|+|+.|.+||+||+.++..++.|.+|
T Consensus 497 wdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH 576 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH 576 (707)
T ss_pred eeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence 55556666777777777777777777777788888999999999999999999999999999999999999999999999
Q ss_pred ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
..+|.+++|||+|++||||++|+.|.+||..+|+++.++ .|.+.|+++.|+++|+.||++|.| ..+++|||
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D--------nsV~lWD~ 648 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD--------NSVRLWDL 648 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCC--------CeEEEEEc
Confidence 999999999999999999999999999999999988775 467899999999999999999988 47999998
Q ss_pred cC
Q 021319 312 EN 313 (314)
Q Consensus 312 ~~ 313 (314)
.+
T Consensus 649 ~~ 650 (707)
T KOG0263|consen 649 TK 650 (707)
T ss_pred hh
Confidence 54
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=232.37 Aligned_cols=287 Identities=26% Similarity=0.435 Sum_probs=229.0
Q ss_pred eccceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 10 NLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 10 ~~~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.+..+.+.||+++|..++|+|- |..|+|||.|+.||||+..... ..... .--.+|+..|..++|+|.+ ++|+++|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCC-cEEEEeec
Confidence 4567889999999999999998 8899999999999999986411 22221 1224899999999999985 69999999
Q ss_pred CCcEEEEeCCCCc--eeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe---Eeeee-ccCcceeeEEeccC
Q 021319 88 DKTVRLWDARSGK--CSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHRR-KFGYEVNEIAWNMT 160 (314)
Q Consensus 88 D~~v~iwd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~-~~~~~~~~~~~~~~ 160 (314)
|.++-||--..+. |+..++. +.+..+++|+++|++||++++|.++-+|...... ..... .+.+.+..+.|+|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 9999999766554 4444443 3456689999999999999999999999876432 22222 35567899999999
Q ss_pred CCeEEEEcCCceEEEEeCCC---CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCe
Q 021319 161 GEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPV 236 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v 236 (314)
..++++++.|++|++|.... -....++.+|+..+.+++|++.|..|++++.|++++||..... +. -|..++
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~ 236 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRAL 236 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccce
Confidence 99999999999999998652 3467788899999999999999999999999999999985422 11 255788
Q ss_pred EEEEEccCCcEEEEecCCceEEEEECCCC------CeEE--EEeccCccceeEEcCC-CCeeEEEecCCcccccccceEE
Q 021319 237 RTISFSHTGDYIASASEDLFIDISNVHTG------RTVH--QIPCRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFR 307 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~------~~~~--~~~~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~ 307 (314)
..++|. ...|||++.|+.|+++.-..+ +++. ...|...||+|.|+|. .+.|+++|+| |+++
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--------G~v~ 306 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--------GIVN 306 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--------ceEE
Confidence 889997 778999999999999975532 1111 1224568999999995 6888999977 7999
Q ss_pred eccccC
Q 021319 308 IYGFEN 313 (314)
Q Consensus 308 ~~~~~~ 313 (314)
+|-|+.
T Consensus 307 ~W~l~~ 312 (312)
T KOG0645|consen 307 FWELEI 312 (312)
T ss_pred EEEecC
Confidence 998863
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-38 Score=248.94 Aligned_cols=281 Identities=22% Similarity=0.353 Sum_probs=244.7
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
+.||...|+.+-|+|+-...++++.|.+|++||..++.. ...++||.++|.+++|+..+ .++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~----e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL----ERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh----hhhhhccccceeEEEEecCc-cEEEecCCccchhhee
Confidence 578999999999999999999999999999999987542 34588999999999999764 7999999999999999
Q ss_pred CCC-CceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCCce
Q 021319 96 ARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGT 172 (314)
Q Consensus 96 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~ 172 (314)
..+ .+|.+.... +..+.+++|.|.|.++++++.|.+|+.|++.+.-.+.+... ..-+..+..+.+|..+++++.+.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 876 344444333 33455789999999999999999999999999888877654 345778888899999999999999
Q ss_pred EEEEeCCCCCceeeeeecccceEEEEECCC---------------CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeE
Q 021319 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPM---------------GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 237 (314)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 237 (314)
+++|-....++...+..|+.++.|++|-|. +.++++++.|++|++||+.++.|+.++.+|+.-|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999999888777888899999999998543 35899999999999999999999999999999999
Q ss_pred EEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 238 TISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 238 ~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
.++|+|.|+||+|+.+|+.++|||+.+++..+.+.. ..-+++++|+.+-+++++|+-|. ++|+|
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq--------t~Kvw 403 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ--------TVKVW 403 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc--------eeeee
Confidence 999999999999999999999999999888877653 44699999999999999999885 57776
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-39 Score=259.83 Aligned_cols=273 Identities=18% Similarity=0.319 Sum_probs=238.3
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
+..|..|.|.|+|..|++|+..|.+.+|+..... -...+..|..+|.++.|+++ +.+++||+.+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn----FEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN----FETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee----HHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh
Confidence 3489999999999999999999999999864321 12246789999999999987 479999999999999998654
Q ss_pred ceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
.+......+ ..+..++|+|....+++++.|++|+|||.+..++... .-++..+.++.|+|....+++++.|..|++||
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 433332233 5566899999999999999999999999988776444 34678899999999999999999999999999
Q ss_pred CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-CcEEEEecCCce
Q 021319 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLF 256 (314)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~ 256 (314)
-++..++.++.+|...|..+.|+|++.+|++++.|..++++|++.++.+..+.+|+..|.++.|+|- ..+|.+|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 578889999999
Q ss_pred EEEEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCc
Q 021319 257 IDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 257 v~v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
|..|.+...+++..++ |.+.|.+++|||-|.+|++|+.|++
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence 9999998666666654 5678999999999999999998873
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.6e-39 Score=262.43 Aligned_cols=287 Identities=20% Similarity=0.384 Sum_probs=243.8
Q ss_pred cceeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
.+..+.||+..|+++.|.| .+.+|+|||.|+.|+||++-.. ......+.||..+|.+++|++.+ ..++|+|-|++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeeccee
Confidence 4567899999999999999 8999999999999999998642 22334688999999999999875 57789999999
Q ss_pred EEEEeCCCCceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc
Q 021319 91 VRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (314)
+++||..+|++...+.......++.|.|++ +.+++|+.|+.|..||+|+.+.++.+. +-..+..+.|-+.+..+++++
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 999999999999999888888999999998 888999999999999999998777664 346788999999999999999
Q ss_pred CCceEEEEeCCCCCceeeee-ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---EEEeeeccc--CeEEEEEc
Q 021319 169 GNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEW--PVRTISFS 242 (314)
Q Consensus 169 ~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~~~~s 242 (314)
+++.+++|+.....++.... .+.....|+..+|++.+++.-+.|..|.++.+..... .+.+++|.. --..+.||
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 99999999987766554432 3344578999999999999999999999998764433 245666643 35568899
Q ss_pred cCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCC-CeeEEEecCCcccccccceEEecc
Q 021319 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~-~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
|||++|+||+.||.+.+||..+.+.+..++.. ..+..+.|||.. .-+|++|- +|-||||+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w--------~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW--------DGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc--------CceeEecC
Confidence 99999999999999999999999988887754 789999999964 66788884 47899995
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=229.09 Aligned_cols=267 Identities=17% Similarity=0.228 Sum_probs=218.9
Q ss_pred CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce--eeeEEec-C
Q 021319 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELS-G 109 (314)
Q Consensus 33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~-~ 109 (314)
-+|+|+|+|-+||+|...++. ....++-....|+.|...|++ ..|+++ ....||+||++++.. +..++.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~----C~rTiqh~dsqVNrLeiTpdk-~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI----CSRTIQHPDSQVNRLEITPDK-KDLAAA-GNQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCe----EEEEEecCccceeeEEEcCCc-chhhhc-cCCeeEEEEccCCCCCceeEEeccCC
Confidence 379999999999999987643 223444445679999999985 455555 457999999998865 3444443 5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-
Q 021319 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV- 188 (314)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 188 (314)
++..+.|..+|+++++|+.||+++|||+|.....+.+++..+++++..+|....++++..+|.|++||+........+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 6678999999999999999999999999998777778888999999999999999999999999999997664444433
Q ss_pred ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
.....+.++.+.|||++|+.+...|...+|++... ..+.+++.|...+..+.+||++++||++|.|..++||+.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 23457899999999999999999999999998542 345667888889999999999999999999999999999
Q ss_pred CCC-CeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 263 HTG-RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 263 ~~~-~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
.+- +.-..+.. ..-+-..+||.++.+|+||+.| +++|+|+++.
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--------~~~rlW~~~~ 289 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--------HTARLWDLSA 289 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCC--------Cceeeccccc
Confidence 876 22233332 3468899999999999999988 5899999864
No 22
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-36 Score=228.13 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=234.9
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
..+.||..+++.+.|+.+|++|.||+.|.+..||-...+ .+. -.+.||.++|.++..+-+ ...+++|+.|.++++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erl-Gty~GHtGavW~~Did~~-s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERL-GTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---cee-eeecCCCceEEEEEecCC-cceeeeccccceeEE
Confidence 347899999999999999999999999999999976432 222 257899999999998765 578999999999999
Q ss_pred EeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-----CCcEEEEEccC-------CeEeeeecc-CcceeeEEeccC
Q 021319 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----DDELTILDVRK-------FKPIHRRKF-GYEVNEIAWNMT 160 (314)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-------~~~~~~~~~-~~~~~~~~~~~~ 160 (314)
||+.+|+++.+.+.......+.|+++|++++.... .+.|.++|++. ..|...+.. ...+....|.|-
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 99999999999998888889999999999887764 34689999884 334444332 345778889999
Q ss_pred CCeEEEEcCCceEEEEeCCCCC-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319 161 GEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 239 (314)
++.++.+.++|.+..|+....+ .+..-..|+..|+.+.++++.+++++++.|.+-++||+++..+++++. .+.||++.
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA 237 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence 9999999999999999998754 455557799999999999999999999999999999999999999985 56799999
Q ss_pred EEccCCcEEEEecCCceEEEEEC--CCCCe------------EEEE-eccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319 240 SFSHTGDYIASASEDLFIDISNV--HTGRT------------VHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 304 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d~~v~v~~~--~~~~~------------~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~ 304 (314)
+++|....++.|+......|--. +.|+- +..+ .|=++||+|||||+|+..++||+| |
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED--------G 309 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED--------G 309 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC--------c
Confidence 99999888887765433333322 22321 1111 234789999999999999999966 7
Q ss_pred eEEeccccCC
Q 021319 305 VFRIYGFENA 314 (314)
Q Consensus 305 ~~~~~~~~~~ 314 (314)
.+||..|+.+
T Consensus 310 ~VR~h~Fd~~ 319 (327)
T KOG0643|consen 310 YVRLHHFDSN 319 (327)
T ss_pred eEEEEEeccc
Confidence 9999999754
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-36 Score=237.94 Aligned_cols=278 Identities=20% Similarity=0.302 Sum_probs=246.5
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
-+++.||.+.|.||++.|-.+.|+||+.|++++|||++++ .....+.||...|..+++++..+ +++|++.|+.|+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK 218 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK 218 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence 4678999999999999999999999999999999999874 35567899999999999998764 888999999999
Q ss_pred EEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCC
Q 021319 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
.||+...+.++....+ +...++...|.-..|+++++|.++++||+|+...++... +..++..+.+.|....+++++-|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999988877765433 445688899999999999999999999999998888865 67789999999999999999999
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
+++++||+...+.+.++..|...+.+++.+|....+|+++.|. |+-|++..+..++.+.+|..-+++++.+.|+ ++++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 9999999999998889999999999999999999999999887 9999999999998899999999999886655 5678
Q ss_pred ecCCceEEEEECCCCCeEEEEe---------ccCccceeEEcCCCCeeEEEecCCc
Q 021319 251 ASEDLFIDISNVHTGRTVHQIP---------CRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~---------~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
|++.|.+..||..+|...+... ....|.+-+|-..+..|+++..||+
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence 9999999999999887665442 1346889999999999999999984
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=251.01 Aligned_cols=290 Identities=22% Similarity=0.369 Sum_probs=245.9
Q ss_pred ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
...+++.||...|.++.|+.|..+|++||.|.++|||.++.... .....+.||.++|-+.-|..+ ..-+.+.+.||.
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~--~~~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~ 212 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN--LFTYALNGHKDYVVACFFGAN-SLDLYTVSKDGA 212 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc--cceEeccCCCcceEEEEeccC-cceEEEEecCce
Confidence 45678899999999999999999999999999999999976432 344568899999998888765 457889999999
Q ss_pred EEEEeCCC-----------------------C-ce--------eeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEE
Q 021319 91 VRLWDARS-----------------------G-KC--------SQQAELS---GENINITYKPDGTHIAVGNRDDELTIL 135 (314)
Q Consensus 91 v~iwd~~~-----------------------~-~~--------~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~ 135 (314)
+.+|.... + +. ....-+. ....+.+|++..+.|+++-..|.+.++
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 99997651 0 00 0001111 334567788899999999999999999
Q ss_pred EccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC-ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC
Q 021319 136 DVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (314)
Q Consensus 136 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg 213 (314)
++..+..++....+ ..+..++|+..|+.+++++.. |++-+|.+.....+...++|...+++++++|||+++|||+.||
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG 372 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence 99999999887665 778999999999999998876 9999999998888888889999999999999999999999999
Q ss_pred eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE----------------------
Q 021319 214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI---------------------- 271 (314)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~---------------------- 271 (314)
.|+|||...+.|..+|..|...|..+.|+..|+.|+|+|.||+|+.||+...+..+++
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999998765543332
Q ss_pred -----------------------eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 272 -----------------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 272 -----------------------~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
.|.++|.+++|+|++..||++|=|+ |+|||++
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk--------TVRiW~i 507 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK--------TVRIWDI 507 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc--------eEEEEEe
Confidence 1346889999999999999999665 8999987
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.4e-35 Score=256.92 Aligned_cols=290 Identities=24% Similarity=0.413 Sum_probs=243.0
Q ss_pred ceeeecc-cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 13 SREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 13 ~~~~~gH-~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+...... .....+.+|...|.+++|+|++ .++++++.|+++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceE
Confidence 5555565 78899999999999999999999999999854221 1233458999999999999985 599999999999
Q ss_pred EEEeC-CCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEc
Q 021319 92 RLWDA-RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 92 ~iwd~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (314)
||||+ ..+.+.+.+.. ...+.+++|+|+++.+++|+.|++|++||+++.+++...+ +...+..++|++++..+++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 99999 44566666643 3455689999999999999999999999999988877764 456899999999999999999
Q ss_pred CCceEEEEeCCCCC--ceeeeeecccc--eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC---eEEEEE
Q 021319 169 GNGTVEVLTYPSLR--PLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP---VRTISF 241 (314)
Q Consensus 169 ~~g~~~~~~~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---v~~~~~ 241 (314)
.++.+++|+..... .+..+..+... ++++.|+|++++++++..|+.+++||+..+.++..+..|... +.+..+
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 99999999998877 45666666555 899999999999999999999999999999999888887664 334455
Q ss_pred ccCCcEEEEecCCceEEEEECCCCCeEEEEe-c-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 242 SHTGDYIASASEDLFIDISNVHTGRTVHQIP-C-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 242 sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
++.++++++|+.|+.|.+|+..++..+..+. + ...+..++|+|..+++++++.+. ++.+++|--
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~------d~~~~~w~~ 453 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG------DGLIRLWKY 453 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC------CceEEEecC
Confidence 7899999999999999999999877776654 3 46789999999999999999543 357888854
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8e-35 Score=225.64 Aligned_cols=248 Identities=21% Similarity=0.298 Sum_probs=216.4
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
+...+.--...|..++|+|.|+++|+||-|+..-||++...... .....++.+|.+.+.+..|-++ ..|+++|.|.
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~ 166 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDM 166 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCc
Confidence 33444555678999999999999999999999999999755222 2334568999999999999864 4688999999
Q ss_pred cEEEEeCCCCceeeeEEe-cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEE
Q 021319 90 TVRLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 166 (314)
++-+||+.+++....+.. .+.+.++.+.| +++.+++|+-|...++||+|....++... +...++.+.|.|+|..|++
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999999999988776654 45677899999 99999999999999999999998777754 5678999999999999999
Q ss_pred EcCCceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 167 TTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
+++|++.++|+++..+.+..+. ....+|++++|+..|++|..|..|..+.+||.-+++.+..+.+|+..|+++..+||
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 9999999999998877666654 33457999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCceEEEEE
Q 021319 245 GDYIASASEDLFIDISN 261 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~ 261 (314)
|..|+|||+|..++||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-35 Score=257.78 Aligned_cols=235 Identities=23% Similarity=0.377 Sum_probs=195.5
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.+.||.++|+.+.|+|+.++|+|||.|+++|+|.+++. .....++||..+|.++.|+|. +.++||+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCC-ceEEEecCCCcee
Confidence 44668999999999999999999999999999999999863 344567899999999999997 5799999999999
Q ss_pred EEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
++|........+.+..+ +..-++.|+|+.+++++|+.|.++++||..+...
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------------- 569 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------------- 569 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----------------------------
Confidence 99998776655555433 3344688999999999999999999999765422
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
++.+.+|.++|.+++|+|+|++||+|+.||.|.+||+..+..+.++.+|...|.++.||.+|..||+
T Consensus 570 -------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 570 -------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred -------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence 2344689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEECCCCCeE------------------------EEEec-cCccceeEEcCCCCeeEEE
Q 021319 251 ASEDLFIDISNVHTGRTV------------------------HQIPC-RAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~------------------------~~~~~-~~~i~~v~~~~~~~~la~~ 292 (314)
||.|..|++||+.+-... ..+.. ..+|..|.|...+-.|+.|
T Consensus 637 gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 637 GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 999999999998652221 12222 2367889998766555543
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=223.13 Aligned_cols=245 Identities=20% Similarity=0.285 Sum_probs=211.6
Q ss_pred eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-----CceeeeEEecCceE-EEEEccCCCEEEEEeCCCcE
Q 021319 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-----GKCSQQAELSGENI-NITYKPDGTHIAVGNRDDEL 132 (314)
Q Consensus 59 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i 132 (314)
.-.+++|++.|..++..+.+.+.+++++.|.++.+|++.. |..++.+..+++.+ .+..++||++.++++.|+.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3468899999999999998889999999999999998754 34455555544444 58899999999999999999
Q ss_pred EEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCC--CCEEEE
Q 021319 133 TILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPM--GRYFAV 208 (314)
Q Consensus 133 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~--~~~l~t 208 (314)
++||+...++.++. -+...+.+++++++...+++++.|.++.+|+........... .|...|+|+.|+|+ ..++++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 99999998776654 466789999999999999999999999999986554333222 23678999999998 679999
Q ss_pred eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCe
Q 021319 209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL 288 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 288 (314)
++.|++|++||+++.+..+.+.+|...++.+++||||...++|++||.+.+||++.++.+..+.+...|++++|+|+...
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEecCCcccccccceEEecccc
Q 021319 289 LAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 289 la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
|+.+-+. -+|||++|
T Consensus 248 L~~at~~---------sIkIwdl~ 262 (315)
T KOG0279|consen 248 LCAATAT---------SIKIWDLE 262 (315)
T ss_pred EeeccCC---------ceEEEecc
Confidence 7655533 29999986
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=220.71 Aligned_cols=281 Identities=16% Similarity=0.211 Sum_probs=230.0
Q ss_pred eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.++...+.+..|+++|+.+.|+-||++.+|||.|++||+|+.... ....++.+|...|.+++.+.++ .-+++|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dn-skf~s~Gg 79 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDN-SKFASCGG 79 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeeccccccc-cccccCCC
Confidence 345566778899999999999999999999999999999987542 2334688999999999888764 57889999
Q ss_pred CCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccC--CeEeeeecc-CcceeeEEeccCCCe
Q 021319 88 DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKF-GYEVNEIAWNMTGEM 163 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (314)
|+.+.+||+.+|+..+.+..+. ++..+.|+.+...+++|+.|.++++||-|+ .+|++.... .-.+.++. ..+..
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~he 157 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHE 157 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccE
Confidence 9999999999999988876554 455799999999999999999999999875 345444321 12344443 45678
Q ss_pred EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe--EEEEE
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV--RTISF 241 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~ 241 (314)
+++++.||+++.|+++..+....+.+ .+|+|++|+++++....++.|+++++.|-.+++.++.+++|...- ..+++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 89999999999999988765544444 469999999999999999999999999999999999998886532 34567
Q ss_pred ccCCcEEEEecCCceEEEEECCCCCeEEEEeccCc--cceeEEcCCCCeeEEEecCCc
Q 021319 242 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA--MNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 242 sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~--i~~v~~~~~~~~la~~~~d~~ 297 (314)
+.....+++||+||.|++||+...+.+.++++... +.++++||...-|.++...+.
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~ 293 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGD 293 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCce
Confidence 88889999999999999999999999988876553 689999998877777765543
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-33 Score=235.22 Aligned_cols=287 Identities=21% Similarity=0.332 Sum_probs=228.9
Q ss_pred eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
=+++||...|+++.|-|.-. +++|||.|++|.+|+=.+. .-...++.|+.-|+++.|+|+ +++++|++.||.+.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIY 215 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe----eeeecccccccceeeEEECCC-CCeEEEecCCccEE
Confidence 45789999999999999877 4999999999999964321 123356789999999999998 57999999999999
Q ss_pred EEeCCCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---------------------
Q 021319 93 LWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--------------------- 147 (314)
Q Consensus 93 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------- 147 (314)
+||-.+|+.+..+. +++.+.+++|+||++.+++.+.|.+++|||+.+.+.+.+..
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 99999998876654 45678899999999999999999999999987654332211
Q ss_pred -----------------------cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCce-----------eeeee----
Q 021319 148 -----------------------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPL-----------DTVVA---- 189 (314)
Q Consensus 148 -----------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~---- 189 (314)
+...+.++.-++++..+++++.+|.+.-|+......- ..+..
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 1224567888899999999999999988875422110 00000
Q ss_pred ------------------------------------------------------------------cccceEEEEECCCC
Q 021319 190 ------------------------------------------------------------------HTAGCYCIAIDPMG 203 (314)
Q Consensus 190 ------------------------------------------------------------------~~~~i~~i~~~~~~ 203 (314)
-...+.+++++|++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 01234578899999
Q ss_pred CEEEEeeCCCeEEEeeCCCcE--EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-E-eccCccce
Q 021319 204 RYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-I-PCRAAMNS 279 (314)
Q Consensus 204 ~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~-~~~~~i~~ 279 (314)
+.+|+|+.||.|++|.+.... .......|..++++++||||+.|||++...+.+.+||+.+.+.... + -|..+|++
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 999999999999999997643 2334567889999999999999999999999999999998766322 2 26789999
Q ss_pred eEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 280 v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
++|+|+..++||||-|.+.+ ||.+++
T Consensus 536 ~aWsP~n~~vATGSlDt~Vi--------iysv~k 561 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVI--------IYSVKK 561 (603)
T ss_pred EEeCCCceEEEeccccceEE--------EEEccC
Confidence 99999999999999998755 888764
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-34 Score=245.76 Aligned_cols=280 Identities=21% Similarity=0.345 Sum_probs=236.1
Q ss_pred cccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
..+|..+.|+..|+.|+-|+. =|.+-||+.... .-.++.+||...+.+++++|++ +++++|+.||.|||||..+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence 467999999999999999875 479999998652 3445788999999999999985 7999999999999999999
Q ss_pred CceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc--ceeeEEeccCCCeEEEEcCC-ceEE
Q 021319 99 GKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGN-GTVE 174 (314)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-g~~~ 174 (314)
+-|..++.. ......+.|+..++.+++.+.||+++.||+.+.+..++...+. +..+++-.|.|..+.++..+ -.|.
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 999888754 4556679999999999999999999999999988777766554 45788888999998888765 5789
Q ss_pred EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE 253 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~ 253 (314)
+|+.++++.+..+.+|+++|.+++|+|.++.||+++=|.+||+||+-.. ..+.++ .+...+..++|+|+|+.||.++.
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEe
Confidence 9999999999999999999999999999999999999999999998543 223344 34557999999999999999999
Q ss_pred CceEEEEECCCCCeEEEEec---------------------cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 254 DLFIDISNVHTGRTVHQIPC---------------------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 254 d~~v~v~~~~~~~~~~~~~~---------------------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
||.|.+||...+.....+.. ....+++++++||+.+.+||..+ .++||++.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn--------~iCiY~v~ 612 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN--------SICIYDVP 612 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc--------cEEEEECc
Confidence 99999999987655533321 13578999999999999999664 58888875
Q ss_pred C
Q 021319 313 N 313 (314)
Q Consensus 313 ~ 313 (314)
+
T Consensus 613 ~ 613 (893)
T KOG0291|consen 613 E 613 (893)
T ss_pred h
Confidence 4
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-33 Score=225.51 Aligned_cols=286 Identities=19% Similarity=0.309 Sum_probs=222.4
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.-.+.||+..|+++.||.||.+||||+.+|.|+||++.++. ....+..--..+.-+.|+|. ..+|+.|+.||.+-
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~----~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW 173 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG----EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW 173 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc----eEEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence 34678999999999999999999999999999999997643 22334444566888999996 57899999999999
Q ss_pred EEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEEEEcC
Q 021319 93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+|.+.++...+.+..+.. ..+-.|.|+|+.++++..|++|++||+++.+|+++... ..+..++.++..+..++.+..
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 999998654444443333 34566999999999999999999999999999988653 234455566666666666666
Q ss_pred CceEEEEeCCCCCceeee--------eecccceEEE---EECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 170 NGTVEVLTYPSLRPLDTV--------VAHTAGCYCI---AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~--------~~~~~~i~~i---~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
++.+.+......+.+... ..+...+.|+ .++..-.++|+|+-||+|.|||+...+..+.+ .|+.+|..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence 665555544433322211 1344444444 44555668899999999999999876655544 57778999
Q ss_pred EEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
+.|-+ ..+|+++..||.|+.||.++|..+..+. |...|.+++.+|+.++++|+|+| ++.+||..++
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D--------~~a~VF~v~~ 399 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD--------NTALVFEVPN 399 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCC--------CeEEEEecCC
Confidence 99999 8999999999999999999999998876 56789999999999999999977 6899987653
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=249.57 Aligned_cols=261 Identities=23% Similarity=0.361 Sum_probs=209.5
Q ss_pred eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.+++..+.+.||...|.++....+|.+|+|||.|+++++|.++.............||...|.+++++..+..+++++|.
T Consensus 353 ~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 353 LPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred cCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 34456678899999999999777889999999999999998854333233334567999999999998888889999999
Q ss_pred CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|+++++|++...+-... .. +. ..+. ...-++..+++++.+|+...++++
T Consensus 433 D~tlK~W~l~~s~~~~~------~~----------~~-----------~~~~----t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAF------PI----------VL-----------TCRY----TERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred CceEEEecCCCcccccc------cc----------ee-----------hhhH----HHHhhcccccceEecCCCceEEec
Confidence 99999999976221000 00 00 0000 001233456666666666666666
Q ss_pred cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 247 (314)
+.|.+.++|++++.+.+..+.+|..++.|+.|+|..+.+||++.|++|+||.+.+..|+++|.+|...|..+.|-.+++.
T Consensus 482 SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q 561 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ 561 (775)
T ss_pred ccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE
Confidence 66666666666666666788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 248 IASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
|+|++.||.+++|++.++..+..+. |..+|.+++-+|...+++|||.|+.+-
T Consensus 562 liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 562 LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred EEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 9999999999999999999998886 577999999999999999999996433
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=243.16 Aligned_cols=288 Identities=23% Similarity=0.396 Sum_probs=227.1
Q ss_pred eeeec-ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcE
Q 021319 14 REYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTV 91 (314)
Q Consensus 14 ~~~~g-H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v 91 (314)
+...+ |.++|.-++|+|.|..+++||.|+.|+|||+..+. ....++||.+.|..+.|+|+.. .+|++|..|+++
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~----~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY----CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE----EEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 44445 99999999999999999999999999999997532 3457899999999999998753 367899999999
Q ss_pred EEEeCCCCce-eeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---------------e---------
Q 021319 92 RLWDARSGKC-SQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---------------R--------- 145 (314)
Q Consensus 92 ~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------------~--------- 145 (314)
++||++.++. .... .+.+...++.+.+|+..++++++|..+.+||+...+... .
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 9999986553 3333 234667789999999999999999999999985321000 0
Q ss_pred -----------------------ecc-Cc---------------------------------------------------
Q 021319 146 -----------------------RKF-GY--------------------------------------------------- 150 (314)
Q Consensus 146 -----------------------~~~-~~--------------------------------------------------- 150 (314)
.+. ..
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 000 00
Q ss_pred ---------------------------------ceeeEEeccCCC-----------------------------------
Q 021319 151 ---------------------------------EVNEIAWNMTGE----------------------------------- 162 (314)
Q Consensus 151 ---------------------------------~~~~~~~~~~~~----------------------------------- 162 (314)
.+.++.-...|.
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 001111001111
Q ss_pred ------------eEEEEcCCceEEEEeCCCCCc-----ee----eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319 163 ------------MFFLTTGNGTVEVLTYPSLRP-----LD----TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 163 ------------~~~~~~~~g~~~~~~~~~~~~-----~~----~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~ 221 (314)
.+++++.|.++++|.++..++ .. +...|...|+|++++|+.+++|||+.|.+.++|++.
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 234455566666666654211 01 123588899999999999999999999999999999
Q ss_pred CcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319 222 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 222 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
+...+.++.+|...|.++.|+|..+.|||+|.|.+|+||...+...++++. |...|..+.|-.+++.|++++.|
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad----- 568 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD----- 568 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC-----
Confidence 999999999999999999999999999999999999999999999999998 78899999999999999999998
Q ss_pred cccceEEeccccC
Q 021319 301 ADEGVFRIYGFEN 313 (314)
Q Consensus 301 ~~~~~~~~~~~~~ 313 (314)
|.+|||++.+
T Consensus 569 ---GliKlWnikt 578 (775)
T KOG0319|consen 569 ---GLIKLWNIKT 578 (775)
T ss_pred ---CcEEEEeccc
Confidence 7899999854
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.9e-35 Score=230.30 Aligned_cols=267 Identities=22% Similarity=0.356 Sum_probs=217.7
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
.+.|+|+++ |...++||..|.+|+|||.+... ....+.||.++|.|+.+.. .+++|||.|.+|++||++++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~----c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE----CLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHH----HHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCC
Confidence 468999997 55679999999999999986532 3346789999999999863 58999999999999999999
Q ss_pred ceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe--eee--ccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319 100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (314)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (314)
+++..... ....+.+.|+ ..++++++.|.++.+||+..+..+ .+. -+-..++.+.| +.++++++++|.+++
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTik 343 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 343 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEE
Confidence 98776543 3445567665 569999999999999999876532 111 12345666665 456999999999999
Q ss_pred EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
+|+..+.+.+.++.+|..+|-|+.. .++++++|++|.+|++||...+.|+..+++|+.-|.++.| +.+.++||+.|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 9999999999999999999988776 5899999999999999999999999999999999999998 56889999999
Q ss_pred ceEEEEECCCCCeEEE----------EeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 255 LFIDISNVHTGRTVHQ----------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 255 ~~v~v~~~~~~~~~~~----------~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|+|+|||+.++...+. ..+.++|..+-| |...+++++.| .|+=||+|.+
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd--------dtILiWdFl~ 478 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD--------DTILIWDFLN 478 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCC--------CeEEEEEcCC
Confidence 9999999987644322 134567888888 55667777755 5888999965
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=244.38 Aligned_cols=248 Identities=24% Similarity=0.400 Sum_probs=215.6
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.+.+|...|++++|+|+++++++|+.|+++||||+... ......+.+|...|++++|+|.+ ++++||+.|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV 270 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence 56667899999999999999999999999999999999332 22345678999999999999997 899999999999
Q ss_pred EEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eeeecc-C-c-ceeeEEeccCCCeEE
Q 021319 92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRKF-G-Y-EVNEIAWNMTGEMFF 165 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~-~-~-~~~~~~~~~~~~~~~ 165 (314)
||||++++++...+..+. .+..++|++++++|++++.|+.+++||+.+... ...... . . .+..+.|+|++.+++
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 999999999988887665 455699999999999999999999999998873 333221 1 1 579999999999999
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccce---EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-ccCeEEEEE
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISF 241 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~ 241 (314)
++..++.+++|++........+.+|...+ .+...++.++++++|+.|+.|.+||+.++..+..+.+| ...+..+++
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 99999999999999888888888887753 34455788999999999999999999998888889999 888999999
Q ss_pred ccCCcEEEEec--CCceEEEEECC
Q 021319 242 SHTGDYIASAS--EDLFIDISNVH 263 (314)
Q Consensus 242 sp~~~~l~s~s--~d~~v~v~~~~ 263 (314)
+|...++++++ .|+.+++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999 78999999653
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-32 Score=211.00 Aligned_cols=287 Identities=18% Similarity=0.275 Sum_probs=233.8
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC--CCcE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG--DKTV 91 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--D~~v 91 (314)
+.+..-.+.|+++.|+++|.++++++.|.+++|||...+. +...+..++..+..++|.... +.++.++. |.+|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~----~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK----QVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc----eeeEeecccccccEEEEecCC-ceEEEccCCCCCce
Confidence 3344456789999999999999999999999999987643 223455666678888886554 44555555 8999
Q ss_pred EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
|.-++.+.+.++-+..+.. +..++.+|-+..+++++.|+++++||+|..+........ ....+++.|.|-+++++.+.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCC
Confidence 9999999999988766544 557999999999999999999999999976655544332 33457899999999999999
Q ss_pred ceEEEEeCCCC--Cceeeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe---EEEEEc
Q 021319 171 GTVEVLTYPSL--RPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV---RTISFS 242 (314)
Q Consensus 171 g~~~~~~~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~~~~s 242 (314)
+.|++|+++.. .|..++. ....+.+.+.|+|+|++|..+...+.+.+.|--++..+.++..+...- ...+|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 99999998754 3555543 235678999999999999999999999999999999888887765432 567899
Q ss_pred cCCcEEEEecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCcccccccceE
Q 021319 243 HTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 306 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~ 306 (314)
||++++++|+.||.|++|++++|+++..+.. .+++.++.|+|...++|+++..-..|.++++.+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccccc
Confidence 9999999999999999999999999887753 678999999999999999998887777766554
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=236.53 Aligned_cols=279 Identities=16% Similarity=0.256 Sum_probs=240.5
Q ss_pred ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
+...++.||++.|+++++|.+...++||+. ++++||+..+..+ ++.-+ .+.+.+..|.|.+ .++++|...|.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kc-----iRTi~-~~y~l~~~Fvpgd-~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKC-----IRTIT-CGYILASKFVPGD-RYIVLGTKNGE 435 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcce-----eEEec-cccEEEEEecCCC-ceEEEeccCCc
Confidence 444667899999999999999988888874 7899999876432 12112 2368888999864 68899999999
Q ss_pred EEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-------------eeeeccCcceeeEE
Q 021319 91 VRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-------------IHRRKFGYEVNEIA 156 (314)
Q Consensus 91 v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~~~~~~ 156 (314)
+.++|+.+...+... .+.+.+..++..||++.+++|+.|.++++||..-... ....+...++.++.
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 999999887655444 3466778899999999999999999999999752111 12344566789999
Q ss_pred eccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCe
Q 021319 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 236 (314)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v 236 (314)
++|++.+++++.-+.++++|.+.+.+..-++.+|.-+|.|++++||+++++||+.|..|++|-+.=+-|.+.+.+|+..|
T Consensus 516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 99999999999999999999999998888899999999999999999999999999999999999899999999999999
Q ss_pred EEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCc
Q 021319 237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
.++.|-|....+.|+|.|+.|+-||..+-+.++++. |...|.+++-+|+|.+++++|.|++
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 999999999999999999999999999888888875 5678999999999999999999985
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7.7e-34 Score=229.48 Aligned_cols=283 Identities=20% Similarity=0.262 Sum_probs=233.0
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
...+..|.+.|+.+.|-++...|++||.|..|++|++....... .-.+.|..++|+.+.+.+++ ..+++++.|+.++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--ISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLR 244 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--hhhhhccCCCcceeeecCCC-ceEEeecCCCcee
Confidence 35567899999999999999999999999999999987544222 22467888999999999875 5778899999999
Q ss_pred EEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc
Q 021319 93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 171 (314)
+|++...+...++..+.. ..++.|......+++|+.|.+++.||+.+....+.......+..+.-+ +..++++.-++
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence 999998887766655444 345666655555999999999999999987666666666566666544 56778888999
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec----ccCeEEEEEccCCcE
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL----EWPVRTISFSHTGDY 247 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~ 247 (314)
++++|+.+...+......++ .|+++..++++..+.+++.|.++.+.|+++..+.+.+... ...++.+.|||++.|
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 99999998888887777665 8999999999999999999999999999998888777542 345788999999999
Q ss_pred EEEecCCceEEEEECCCCCeEEEEec--c-CccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 248 IASASEDLFIDISNVHTGRTVHQIPC--R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~~~--~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
+|+||.||.|+||++.+++....+.. . ..|++++|+|.|..|++++.++ ..++|
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~--------~v~lW 458 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK--------AVTLW 458 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc--------ceEec
Confidence 99999999999999999988777653 2 2599999999999999888764 56676
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-33 Score=233.66 Aligned_cols=280 Identities=20% Similarity=0.245 Sum_probs=238.7
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.|.+..|...|.+|.|+|....++++-..|.|.|||.+++. -+. .+.-..-+|.+..|.+. .+++++|+.|..||
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVk--sfeV~~~PvRa~kfiaR-knWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVK--SFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIR 80 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eee--eeeecccchhhheeeec-cceEEEecCCceEE
Confidence 35566789999999999999999999999999999998743 222 34446778888888875 57999999999999
Q ss_pred EEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eeeec-cCcceeeEEeccCC-CeEEEEc
Q 021319 93 LWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRK-FGYEVNEIAWNMTG-EMFFLTT 168 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 168 (314)
+++.++++.+..++.+..- .+++.+|...++.+++.|-.|++||....=. .+..+ +..-+.+++|.|.+ +.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999998888766654 4789999999999999999999999876422 23322 34558899999865 6788889
Q ss_pred CCceEEEEeCCCCCceeeeeecccceEEEEECCCC--CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 246 (314)
Q Consensus 169 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 246 (314)
-|+++++|.+.+..+..++.+|..+|+|+++-+.| .+|++|+.|.+|+|||..+-.|++++++|...|+.++|+|.=.
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999997754 5999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCc
Q 021319 247 YIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 247 ~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
+++|||+||++++|+..|-++...+-. .+++.+|+-++..+.+|.|.+.+.
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 999999999999999988776655443 457889999988888887776544
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-33 Score=222.20 Aligned_cols=247 Identities=24% Similarity=0.420 Sum_probs=215.6
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.+.||.+.|.+|.|+..|++|++|+.|-.+++||.+.. ...+ ..+.||.-.|.+++|-|.+ ++|+|++.|.+|
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~ti 217 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTI 217 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeecccccce
Confidence 45678899999999999999999999999999999998652 1111 2356899999999999985 799999999999
Q ss_pred EEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccC---------
Q 021319 92 RLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT--------- 160 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~--------- 160 (314)
+.|+..++.|+.++..+.+-+ .+..+.||.++++++.|.++++|-+.+.+.... ..+..++.+++|-|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 999999999999887666654 467889999999999999999999887643222 244566777777553
Q ss_pred ------CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc
Q 021319 161 ------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 234 (314)
Q Consensus 161 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 234 (314)
+.++..++.|+++++|+......+.++.+|...|..++|+|.|+||+++..|+++++||++..+|.+++..|+.
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH 377 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc
Confidence 24778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 235 PVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
-|.+++|+-+..+++||+-|-.+++|..
T Consensus 378 fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 378 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999974
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-32 Score=232.26 Aligned_cols=284 Identities=24% Similarity=0.375 Sum_probs=214.1
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
...+.||+.+|+++.|+..|.+|+|||.|+.|.+||+-. ..-.+++.||++.|+.+.|.. +..+++|.+.|+.|+
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~----E~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG----EEGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIK 174 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEecc----ceeeEEeecchHHHhHHhccC-CCeEEEEeccCceEE
Confidence 345789999999999999999999999999999999864 234568999999999998875 357999999999999
Q ss_pred EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccC--------------------------------
Q 021319 93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK-------------------------------- 139 (314)
Q Consensus 93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------------- 139 (314)
+||+.+..|..+... .++...+++.+ +.+++++.|+.+++|++..
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~ 252 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT 252 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEee
Confidence 999999888766533 44555666665 6788888888888888710
Q ss_pred --------------------------------------------------------------------------------
Q 021319 140 -------------------------------------------------------------------------------- 139 (314)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (314)
T Consensus 253 d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~ 332 (888)
T KOG0306|consen 253 DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSG 332 (888)
T ss_pred cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecC
Confidence
Q ss_pred -----------------------------------------------------------------------CeEeeeecc
Q 021319 140 -----------------------------------------------------------------------FKPIHRRKF 148 (314)
Q Consensus 140 -----------------------------------------------------------------------~~~~~~~~~ 148 (314)
.+.+.++..
T Consensus 333 ~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~ 412 (888)
T KOG0306|consen 333 GTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC 412 (888)
T ss_pred CcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc
Confidence 000000000
Q ss_pred CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-----c
Q 021319 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M 223 (314)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-----~ 223 (314)
+ -+.+..|.|.+.++++|..+|.+.+|++.+...+.+...|.+.++.++.+||++.+++|+.|.+|++||..- +
T Consensus 413 ~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 413 G-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred c-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 0 001112333344445555555555555555554555667999999999999999999999999999999742 1
Q ss_pred EE---EE----EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecC
Q 021319 224 LC---VR----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 224 ~~---~~----~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
.. +. +.-..+..|.|+++||||++||.+=.|.+|+||-+.+-+-... +.|+-+|.|+..+||.++++|||.|
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence 11 10 1112456799999999999999999999999999988776554 4577799999999999999999999
Q ss_pred CcccccccceEEecccc
Q 021319 296 KNKYQADEGVFRIYGFE 312 (314)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (314)
| ++||||++
T Consensus 572 K--------nVKiWGLd 580 (888)
T KOG0306|consen 572 K--------NVKIWGLD 580 (888)
T ss_pred C--------ceEEeccc
Confidence 8 58999986
No 43
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.4e-32 Score=210.46 Aligned_cols=271 Identities=20% Similarity=0.292 Sum_probs=212.9
Q ss_pred ccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 19 H~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
-.+.|.+|+|||+. .+++++|.|++||+|+++..+ .........|.++|.+++|+.++ ..+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence 35689999999955 456688999999999997632 22223456799999999999775 788999999999999999
Q ss_pred CCceeeeEEecCceEEEEEccCCC--EEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319 98 SGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
+++......+...+..+.|-+... .|++|+.|.+|+.||+|...++.+.+.+..+.+. .-....++++..+..+.+
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~--Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA--DVLYPMAVVATAERHIAV 180 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh--hccCceeEEEecCCcEEE
Confidence 997666666666677788876655 8999999999999999999999998887665543 345678899999999999
Q ss_pred EeCCCCCceee-e-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc--EEEEEeeecc---------cCeEEEEEc
Q 021319 176 LTYPSLRPLDT-V-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLE---------WPVRTISFS 242 (314)
Q Consensus 176 ~~~~~~~~~~~-~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~---------~~v~~~~~s 242 (314)
|.+........ . ..-...+.|++..++....|.|+-+|.+.+..+..+ +.-.+|+.|. .+|++|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99854322111 1 112335789999999988899999999999988765 2222333333 368899999
Q ss_pred cCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEec
Q 021319 243 HTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~ 294 (314)
|.-..|+|++.||....||...-.++... .+..+|++.+||.+|.++|++-.
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 99999999999999999998765555554 35679999999999999999863
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.2e-33 Score=211.84 Aligned_cols=283 Identities=17% Similarity=0.285 Sum_probs=237.6
Q ss_pred ceeeecccccEEEEEEC---CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 13 SREYTGHKKKVHSVAWN---CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s---~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
..++.||..+|-.++|| |+|-+|++++.|+.=.+=+=+++ .++ -.+.||+++|...+.+.+ ....+|++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwi--gtfeghkgavw~~~l~~n-a~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWI--GTFEGHKGAVWSATLNKN-ATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcE--EeeeccCcceeeeecCch-hhhhhhhcccc
Confidence 35678999999999998 47889999999998766443332 232 357899999999988754 56788999999
Q ss_pred cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee--eeccCcceeeEEeccCCCeEEEE
Q 021319 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+.++||..+|..+..++.+.-...++|+.|.+.|++|+.+.-+++||+.+++... -..+...+..+.|....+.++++
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 9999999999887777766666689999999999999999999999998765332 23456678899999999999999
Q ss_pred cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 247 (314)
..++++++||..+.+.++++. ...+++++-++++|+++.++. .+.|.+||......++.++ ....|.+.+.+|+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCce
Confidence 999999999999988877765 356799999999999987764 5569999999888887764 4567899999999999
Q ss_pred EEEecCCceEEEEECCCCCeEEEE--eccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 248 IASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+++|++|..++.+|..+|..+..+ .+.++|.||.|+|+|...|+||.| |++|||-.
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--------GTirlWQt 296 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--------GTIRLWQT 296 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC--------ceEEEEEe
Confidence 999999999999999999888664 356899999999999999999977 78999954
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-32 Score=209.74 Aligned_cols=243 Identities=21% Similarity=0.312 Sum_probs=211.4
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
++.||.++|..|.|.+|++.|+|||.|++|+.||++++. ...+.++|..-|+.+.-..-+..++.|++.|+++|+|
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence 357999999999999999999999999999999998753 2346788999999988655567789999999999999
Q ss_pred eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceE
Q 021319 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV 173 (314)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~ 173 (314)
|.++..++++.+-+.+..+++|..++..+.+|+.|+.|++||+++....+... +.-++..+..++.|..++.-+-+.++
T Consensus 161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence 99999888887777788899999999999999999999999999887776654 34578899999999999999999999
Q ss_pred EEEeCCCC----Cceeeeeeccc----ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC
Q 021319 174 EVLTYPSL----RPLDTVVAHTA----GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 245 (314)
Q Consensus 174 ~~~~~~~~----~~~~~~~~~~~----~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 245 (314)
++|+.+.. +.+..+.+|.. ....++|+|+++.+..|+.|..+.+||.....++..+++|...|.+++|+|..
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 99997653 33555655432 34678999999999999999999999998888899999999999999999999
Q ss_pred cEEEEecCCceEEEEE
Q 021319 246 DYIASASEDLFIDISN 261 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~~ 261 (314)
.+|.+++.|..|++=+
T Consensus 321 ~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLGE 336 (338)
T ss_pred cEEEEeccCceeEeec
Confidence 9999999999887643
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.6e-33 Score=228.20 Aligned_cols=244 Identities=21% Similarity=0.362 Sum_probs=206.8
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
+.++|.||+.+|.+++|+.+|..|+|+|.|+.|++||++++.. .. ..| ...++++.++|++.+.+++|+.|+.
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~--~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV--LS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE--EE----EEecCCCceeeecCCCCCcEEEEecCCCc
Confidence 5688999999999999999999999999999999999987531 11 223 3457899999998889999999999
Q ss_pred EEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEEEE
Q 021319 91 VRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (314)
|+.||++++++++.... -+.+..+.|.++++.+++.+.|+++++|+.+.+.++..+.- -....++..+|.++.++..
T Consensus 324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 99999999998776643 34567899999999999999999999999988776654332 2456788899999999999
Q ss_pred cCCceEEEEeCCCC---Cceeeeeecccc--eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 168 TGNGTVEVLTYPSL---RPLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 168 ~~~g~~~~~~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
+-++.+.++..... .+-..+.+|..+ ...+.|||||++|++|+.||.+.+||.++.+.+.+++.|+.++..+.|+
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wH 483 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWH 483 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEec
Confidence 99999999875432 233456677654 4567899999999999999999999999999999999999999999999
Q ss_pred cCC-cEEEEecCCceEEEEE
Q 021319 243 HTG-DYIASASEDLFIDISN 261 (314)
Q Consensus 243 p~~-~~l~s~s~d~~v~v~~ 261 (314)
|.. .-+||++.||.|.+|+
T Consensus 484 P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCcceeEecccCceeEecC
Confidence 974 6899999999999996
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-32 Score=236.38 Aligned_cols=247 Identities=22% Similarity=0.326 Sum_probs=205.2
Q ss_pred eeee-cccccEEEEEECCCCCEEEEeeCCCcEEEeecCC--------------------------------CCCC-----
Q 021319 14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP--------------------------------HGHG----- 55 (314)
Q Consensus 14 ~~~~-gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~--------------------------------~~~~----- 55 (314)
+++. +|.+.|.++.||+||+||||||.|+.||||.+.. ....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4555 8999999999999999999999999999998754 0000
Q ss_pred -------------------ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE
Q 021319 56 -------------------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (314)
Q Consensus 56 -------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 116 (314)
..+..++.||.+.|.+|+|+- +++|+|+|.|++||+|++....|+..+.+..-+.+++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 011124679999999999986 46999999999999999999999999988888889999
Q ss_pred cc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee--c---
Q 021319 117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--H--- 190 (314)
Q Consensus 117 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~--- 190 (314)
+| |.+++++|+.|+.++||++...+.+.-.....-+..+.|.|+|+..++|+-+|..++|+....+....... |
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 99 78999999999999999998888777666677899999999999999999999999999887665444321 1
Q ss_pred ---ccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 191 ---TAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 191 ---~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
...|+.+.+.|.. ..+++.+.|..|||||.++...+..|+++.. .-...+|++||++|++|++|..|++|+.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2269999998744 3466677899999999987777777776542 3455779999999999999999999997
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.3e-30 Score=213.35 Aligned_cols=244 Identities=30% Similarity=0.510 Sum_probs=210.7
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
...+.+|...+..+.|+|++++|++++.|+.|++|+++... ....+..|...+.++.|+++ +.++++++.|+.++
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~ 118 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK 118 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence 35567899999999999999999999999999999987532 23356688889999999987 56888888899999
Q ss_pred EEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCC
Q 021319 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
+||+++++...... ....+..+.++|++.++++++.++.+.+||++..+++..... ...+.++.|+++++.+++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence 99999777666554 334567899999999998888899999999987776655543 3478899999999999999999
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
+.+.+|+....+.+..+..|...+.+++++|++.++++++.||.|++||+.++..+..+..+...+.+++|+|++++|++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 99999999887777777788889999999999999998888999999999988888888888889999999999999999
Q ss_pred ecCCceEEEEE
Q 021319 251 ASEDLFIDISN 261 (314)
Q Consensus 251 ~s~d~~v~v~~ 261 (314)
++.|+.+++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999995
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.2e-33 Score=224.40 Aligned_cols=234 Identities=17% Similarity=0.325 Sum_probs=200.7
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee
Q 021319 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (314)
Q Consensus 66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 144 (314)
..+|..+.|.|++ ..|++|+.-|.+.+|+...-...... .+...+.++.|++++.++++|..+|.|++|++.......
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 4578999999985 67889999999999987432222222 234556689999999999999999999999986543322
Q ss_pred eec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319 145 RRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 145 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~ 223 (314)
... +..++++++|+|.+..|+++++||.+++|+....+....+.+|...+.+++|+|....+|+|+.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 222 3367999999999999999999999999999888777788999999999999999999999999999999999999
Q ss_pred EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcC-CCCeeEEEecCCcccc
Q 021319 224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 224 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~ 300 (314)
.|+.++..|+..|..+.|+|++.+|+|+|.|..++++|.++-+.+..+. |+..+++++||| ...+|.+||.|+.++-
T Consensus 255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 9999999999999999999999999999999999999999777777665 677899999999 4578899999987763
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=219.74 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=225.2
Q ss_pred eeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
.|.||.+.|+|++=+|.. ..++||+.||.|+|||+.... ....+.+|.+.|..+++.. +.+++++.|++|+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~----~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE----CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----hhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 458999999999999987 789999999999999997643 2346789999999999975 46789999999999
Q ss_pred EeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-eeeEEeccCCCeEEEE-cCCc
Q 021319 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLT-TGNG 171 (314)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g 171 (314)
|-+.. ........++....+.....+..+++++ ..|.|||.....|+....++.. +.++.|+|....++.+ ..|+
T Consensus 134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeccC-CcceeeeccccccccccccccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 98754 3334443444444555555666777775 4699999999999998888754 7889999987665554 5899
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccCCcEEEE
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
.+.+||+....|+..+.. ....+.|+|+|.+-.+++|+.|-.+..||++... .+..+.+|-.+|.+++|||.|+-++|
T Consensus 211 sIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred ceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 999999999988876642 3346789999987789999999999999998764 35677889999999999999999999
Q ss_pred ecCCceEEEEECCCCCeEEEEec--cCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 251 ASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
||-|..|+|+.++.++-...+.. ...|.+|.||-|.+++++||+| |.+|+|-
T Consensus 290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd--------~nvRlWk 343 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD--------GNVRLWK 343 (433)
T ss_pred ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC--------cceeeee
Confidence 99999999999988765444332 4579999999999999999977 5788884
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=207.95 Aligned_cols=284 Identities=21% Similarity=0.340 Sum_probs=230.8
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC------------CC-CCc-eeeEEeecCCCCEEEEEEcCC
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------------HG-HGK-VKDIELRGHADSVDQLCWDPK 77 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~------------~~-~~~-~~~~~~~~h~~~v~~l~~~~~ 77 (314)
+.+.++.|++++++-+|||||.+++|||.|.+|+|.|++. +. +.. .....+-.|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4466789999999999999999999999999999999861 00 000 111245579999999999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceee---eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee----eccCc
Q 021319 78 HADLIATASGDKTVRLWDARSGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGY 150 (314)
Q Consensus 78 ~~~~l~s~~~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~ 150 (314)
. .+|+||+.|++|+++|...-...+ .+.......++.|+|.|.+|++|.....+++||+.+.+.... -++..
T Consensus 184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 4 799999999999999986543222 222334567899999999999999999999999999876543 34556
Q ss_pred ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-eccc-ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~-~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~ 228 (314)
.+.++.+++.++.+++++.||.+++|+--+.+++.++. .|.+ +|.+..|..+++++.+.+.|..+++|.+.++.++++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 79999999999999999999999999998888887764 5654 688899999999999999999999999999999999
Q ss_pred eeeccc-----CeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEE--EeccCccceeEEcCCCCeeEEEecCC
Q 021319 229 FTKLEW-----PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 229 ~~~~~~-----~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~--~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+.+-.. .-....|+....|++.-.+ .+.+--||.+++..+.. +.|.+.++.+..+|.++.|.++|+|.
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 876421 1233458888888887665 36789999998765544 45678999999999999999999985
No 52
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=207.13 Aligned_cols=280 Identities=16% Similarity=0.221 Sum_probs=209.3
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
..|.||.+.|++++|+.||++|+|++.|++||||+++...+..-..++..-..+..+.+.|.|+...++++.-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 45789999999999999999999999999999999875332211112222223456788999998888888888899999
Q ss_pred EeCCCCc---eeee----------EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-ceeeEEecc
Q 021319 94 WDARSGK---CSQQ----------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNM 159 (314)
Q Consensus 94 wd~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~ 159 (314)
|-....+ .... .......+.+.....++++++++.|.+|.+|+++ ++.+..+.... .....+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9654321 1110 0112234556667788999999999999999998 66666655432 345677899
Q ss_pred CCCeEEEEcCCceEEEEeC--------CCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-------E
Q 021319 160 TGEMFFLTTGNGTVEVLTY--------PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-------L 224 (314)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-------~ 224 (314)
+|.++++++-.-.+.+|.. +....+.++.+|...+...+|+++.+.+++.+.||++++||.+-. +
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999988888888863 123345678899999999999999999999999999999998532 2
Q ss_pred EEEEeee--c--ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecC
Q 021319 225 CVRTFTK--L--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 225 ~~~~~~~--~--~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d 295 (314)
.+++... + ......++.+|+|+.||.+. ...++++..++|+..-.+. |.+.|.+++|+|+|+++|++|+-
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 2333321 1 12334799999999998554 3458999999988776554 57889999999999999999953
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.4e-30 Score=207.33 Aligned_cols=273 Identities=23% Similarity=0.354 Sum_probs=217.0
Q ss_pred ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC--CEEEEEeCCCcEEEE
Q 021319 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRLW 94 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~D~~v~iw 94 (314)
..|.+.|.+|.-. ++.|+||++||.+|+|+..- . ....+.||.++|.+++|.-.+. ..++++|.|.++++|
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k-~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----K-SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC----c-eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 3588899999876 78999999999999999752 2 2346789999999888854332 358999999999999
Q ss_pred eCCCCceeee-----EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC--e-----------------------Eee
Q 021319 95 DARSGKCSQQ-----AELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--K-----------------------PIH 144 (314)
Q Consensus 95 d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~-----------------------~~~ 144 (314)
-.+.+..... ..++....++...+++..+++|+.|..+.+|+..+. . |+.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 8877653211 123445567888999999999999999999993210 0 111
Q ss_pred ee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~ 223 (314)
.. -+...+.++.|++ ...++.++.|.+++.||+.......++.+ +...+|++.+|..++||+|+.|..+++||.+++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 11 1234678899988 77788899999999999988776665543 567899999999999999999999999999864
Q ss_pred ---EEEEEeeecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCC-eEEEEe-ccCccceeEEcCCCCeeEEEecCCc
Q 021319 224 ---LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 224 ---~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~-~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
...++|.+|..-|.++.|+|.. .+|+|||.|+.+++||+++.+ ++..+. |...|.++.|+. +.++++||.|+.
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNK 411 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcce
Confidence 2457888999999999999976 568899999999999999877 776664 567899999984 779999999986
Q ss_pred cc
Q 021319 298 KY 299 (314)
Q Consensus 298 ~~ 299 (314)
++
T Consensus 412 l~ 413 (423)
T KOG0313|consen 412 LR 413 (423)
T ss_pred EE
Confidence 44
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.5e-30 Score=204.79 Aligned_cols=284 Identities=17% Similarity=0.174 Sum_probs=234.3
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
....|..|+..|.+|+.+|+.++++|||.|....||+..++. ...++.+|+++|.++.|+.+ +.+||||+.+|.|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v 130 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKV 130 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccC-ceEEEecCCCccE
Confidence 345678999999999999999999999999999999987643 34578999999999999987 5799999999999
Q ss_pred EEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcC
Q 021319 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+||...++.....+. .-..+.-+.|+|-+..|+.|+.||.+.+|.+.+....+.. -+..++.+=.+.|+|+.++++..
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 999999887655543 2344556899999999999999999999999885333332 24556777789999999999999
Q ss_pred CceEEEEeCCCCCceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--------cccCeEE--
Q 021319 170 NGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--------LEWPVRT-- 238 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~-- 238 (314)
+|++++|+..+..++..+.+ .....++++++..+..+..|+.++.+++-+-.+++.+.-..+ ++..+.+
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988877653 334578999999999999999999999999888887655442 2333444
Q ss_pred -EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319 239 -ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 301 (314)
Q Consensus 239 -~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~ 301 (314)
+.++..=++.|+|+-||+|.|||..+.++.++..|...|..+.|-+ ..+|++++.|+..++|
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence 4455555789999999999999999999999999989999999998 7788899988544433
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.7e-30 Score=240.21 Aligned_cols=239 Identities=17% Similarity=0.317 Sum_probs=197.6
Q ss_pred ccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 19 H~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
+...|.+++|+|. +.+|++++.||+|++||+.+.. ....+.+|.+.|.+++|+|.++.+|+||+.|++|++||++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 4568999999875 7899999999999999987531 2345779999999999998667899999999999999999
Q ss_pred CCceeeeEEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEccCCe-Eeeee-ccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319 98 SGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (314)
++.+...........++.|. +++..+++|+.|+.|++||++..+ ++... .+...+..+.|. ++..+++++.|+.++
T Consensus 607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 98887776666666778884 579999999999999999998754 33332 345678889996 678899999999999
Q ss_pred EEeCCC------CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-------------eecccC
Q 021319 175 VLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------------TKLEWP 235 (314)
Q Consensus 175 ~~~~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------------~~~~~~ 235 (314)
+|++.. ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+......+..+ ..+...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 999863 2466778899999999999999999999999999999998654332211 123346
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
|.+++|+|++.+|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999986
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-30 Score=229.32 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=233.4
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
.-.+.|..++|+|....|+++-..|.|++||..-.. .--++.+|.++|..++|+|.. .+++||+.|-.|++|+..
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecc
Confidence 345689999999999999999999999999986421 223577999999999999985 599999999999999999
Q ss_pred CCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319 98 SGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
+.+|..++..+-..+ .+.|++.-.++++++.|.+|+||+..+.+.+... -+..-+.+..|+|..+.+++++-|.++++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 999988776555444 5789999999999999999999999988877664 35567899999999999999999999999
Q ss_pred EeCCCCCc-----------------------------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-
Q 021319 176 LTYPSLRP-----------------------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC- 225 (314)
Q Consensus 176 ~~~~~~~~-----------------------------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~- 225 (314)
||....+. ...+.+|..+|+.++|+|.-..+++|+.|..|++|.+...+.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 99643221 112457889999999999999999999999999999976543
Q ss_pred -EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319 226 -VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 226 -~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+.+..+|-.+|+++-|+|....++|.|+|+.++|||+.+-+.++++.. .++-..++-||..+++|.|-+.+
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 566778999999999999999999999999999999999888888864 35677899999999998766543
No 57
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.4e-30 Score=199.55 Aligned_cols=267 Identities=18% Similarity=0.243 Sum_probs=215.6
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
...|.+|.|+|.++.|+.++.||++++|++.... ....+ .|..++.+.+|.+. ..+++|+.||.|+++|+.++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence 5689999999999999999999999999997642 12223 58999999999874 46889999999999999998
Q ss_pred ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCC
Q 021319 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP 179 (314)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 179 (314)
.-.....+...+.++.+.+....+++|++|++|++||++..........+..+.+ .+..++.+++++.+..+.+|+++
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~--~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC--MDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE--EeccCCEEEEeecCceEEEEEcc
Confidence 8777767777788899999889999999999999999998665555555544444 35678999999999999999998
Q ss_pred CCCceeee--eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeec---------ccCeEEEEEccC
Q 021319 180 SLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKL---------EWPVRTISFSHT 244 (314)
Q Consensus 180 ~~~~~~~~--~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~---------~~~v~~~~~sp~ 244 (314)
......+. ..-...+.|+++-|++.-+|+++-||.|.+=.++.. .....|+.| -.||++++|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 75532221 234567899999999888999999998777655443 112233333 248999999999
Q ss_pred CcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecC
Q 021319 245 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d 295 (314)
...||||+.||.|.+||...-+.+.++.- ..+|.+++|+-+|.+||.++..
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 99999999999999999998888877753 4679999999999999999853
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.3e-31 Score=201.93 Aligned_cols=239 Identities=21% Similarity=0.327 Sum_probs=185.2
Q ss_pred cccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
.+.+..|+|++.. +.+++|+.||++||||..... .+...++.|+..|.++.|++.....++++|.|++||+|+...
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 5689999999985 578899999999999964322 233467899999999999998888888999999999999887
Q ss_pred CceeeeEEecC-ceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 99 GKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
++.+.++..+. .+....|+| ..+.+++++.|+.+++||++..
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------------------------------------ 180 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------------------------------------ 180 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC------------------------------------
Confidence 77666654332 234566776 3566677777777777776542
Q ss_pred eCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccC-CcEEEEecC
Q 021319 177 TYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHT-GDYIASASE 253 (314)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~ 253 (314)
.+ ...+..|..++.|+.|+. +..+++||+.|+.|+.||++..+ .+..+.+|..+|+.++|||. ...|||+|-
T Consensus 181 ----gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 181 ----GK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred ----Cc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc
Confidence 11 123567888999999997 45679999999999999998754 45677899999999999997 578999999
Q ss_pred CceEEEEECCCCCe-EEEEe-ccCccceeEEcC-CCCeeEEEecCCcccccccceEEecc
Q 021319 254 DLFIDISNVHTGRT-VHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 254 d~~v~v~~~~~~~~-~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
|-++++||...+.- +.+.. |..-+..+.||+ +..++|++|=| +.+.||+
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD--------e~l~Vw~ 307 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD--------ELLYVWN 307 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccc--------cceeeec
Confidence 99999999986543 33343 344588999998 56889999955 5566775
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7e-30 Score=224.05 Aligned_cols=246 Identities=18% Similarity=0.282 Sum_probs=206.3
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
.+..+..|.++|+.|+|+|++.+++|||.|-.|+||+...+ ..-..+.||-+.|..+.|++.. .+|+|+|.|.+|
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCC-ceEEEccCCCeE
Confidence 44557899999999999999999999999999999999753 2345788999999999999875 599999999999
Q ss_pred EEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCeEe---------------------------
Q 021319 92 RLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPI--------------------------- 143 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------------------- 143 (314)
|||+..+++|+.....+.+.+ +..|+|....+++++-|.+|++||+.-.+..
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 999999999999887776654 5679999999999999999999998532110
Q ss_pred -eee--ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319 144 -HRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218 (314)
Q Consensus 144 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw 218 (314)
+.. -+...++-++|+|.-+.++++++|..+++|.+...+ .+.+..+|-.+|.++-|+|....+++.+.|++|+||
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 000 123446778999999999999999999999986543 466778999999999999999999999999999999
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~ 263 (314)
|+.+.+.++++.........++-+|..+++|.|-..| +.|+.+.
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 9999999999988788899999999999888554444 4444443
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.7e-31 Score=208.47 Aligned_cols=283 Identities=20% Similarity=0.318 Sum_probs=235.8
Q ss_pred ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee----eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.|.++.+.|..|||||++|+||+.||.|.+||..++...+-. .-.+..+.++|.|++|+.+ .+.+++|+.||.|+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEE
Confidence 467888999999999999999999999999998764322111 1134568899999999976 67999999999999
Q ss_pred EEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC
Q 021319 93 LWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 93 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+|-+.+|.|.+.+. ....+.++.|+.|+..+.+++.|.++++.-+++++.++... +..-++...|.++|..+++++.
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999999988764 34556789999999999999999999999999988776543 4455888999999999999999
Q ss_pred CceEEEEeCCCCCceeeee--ecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeec---ccCeEEEEEcc
Q 021319 170 NGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKL---EWPVRTISFSH 243 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~sp 243 (314)
||++++|+..+.+++.++. +...+++.+-.-|.+ ..+++|.+..+|.+.++ +++.++.+... ....-+.+.||
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecC
Confidence 9999999998888777764 345567888777755 56888999999999998 57777777532 34566778999
Q ss_pred CCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 244 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
.|.++.+.++|+.++.+.+.+|++-+.++ +..-+-.++.||..++||+=++| |.+|+|
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED--------gllKLW 506 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED--------GLLKLW 506 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc--------chhhhc
Confidence 99999999999999999999999888876 44567889999999999999866 678888
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=211.16 Aligned_cols=247 Identities=17% Similarity=0.249 Sum_probs=204.5
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.+++.||..+|..+.||||..+|++|+.|..+++||+.++.... .+ -.+|...+.+.+|.|++ ..+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~--~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH--LY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh--hc-ccCcCCCcceeEEccCC-ceeEecCCCCcEE
Confidence 46788999999999999999999999999999999998754221 11 23466889999999985 5788999999999
Q ss_pred EEeCCCCceeeeEE-e-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 93 LWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 93 iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
.||++... ....+ . ......+++++||+++++.+.|..+.+++.+....+..+.....+.+...+.+++++++...+
T Consensus 338 ~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 338 MWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred EecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 99986432 22111 1 123567899999999999999999999998776555455556678889999999999999999
Q ss_pred ceEEEEeCCCCCceeeeeecccceE--EEEECC-CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCC-c
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-D 246 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~--~i~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~ 246 (314)
..+.+|++...+.+..+.+|..+-+ .-+|.. +.+++|+|+.|+.|++|+..+++.+..+.+|...|++++|+|.. .
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 9999999998777788888876533 334543 45799999999999999999999999999999999999999975 6
Q ss_pred EEEEecCCceEEEEECCC
Q 021319 247 YIASASEDLFIDISNVHT 264 (314)
Q Consensus 247 ~l~s~s~d~~v~v~~~~~ 264 (314)
++||||.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 899999999999997653
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.7e-30 Score=209.49 Aligned_cols=296 Identities=18% Similarity=0.302 Sum_probs=243.2
Q ss_pred eeeeeccceeee----cc--cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC
Q 021319 6 IPFKNLHSREYT----GH--KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA 79 (314)
Q Consensus 6 ~~~~~~~~~~~~----gH--~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 79 (314)
.|..++..+.+. +| .+.|++|.|+|..+.+++||.|++++||.++...+..++.+.+. .-+|.+++|.|++.
T Consensus 193 Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 193 LPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGH 270 (514)
T ss_pred CCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCc
Confidence 555555554442 44 46899999999999999999999999999987666666666664 56899999999877
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEEecCc----eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319 80 DLIATASGDKTVRLWDARSGKCSQQAELSGE----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI 155 (314)
Q Consensus 80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 155 (314)
..+++++.-..+..||+.+.+..+.....+. .-....+|++++|++.+..|.|.+.-..+...+...+....+..+
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~ 350 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDF 350 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeE
Confidence 6899999999999999988876544332221 224667899999999999999999999999999999998999999
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEeeCCCeEEEeeCCC------cEEEEE
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRT 228 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~ 228 (314)
.|+.++..+++.+++|.|++|++.....+..+.... -.-++++.++++++||+|+..|.|.|||..+ .+.+++
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 999999999999999999999998887776665322 2347888999999999999999999999653 455667
Q ss_pred eeecccCeEEEEEccCCcEEEEecC--CceEEEEECCCCCeEEEEecc----CccceeEEcCCCCeeEEEecCCcccccc
Q 021319 229 FTKLEWPVRTISFSHTGDYIASASE--DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKYNLLAYAGDDKNKYQAD 302 (314)
Q Consensus 229 ~~~~~~~v~~~~~sp~~~~l~s~s~--d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~~~~la~~~~d~~~~~~~ 302 (314)
+.+....|+++.|+|++++||-+|. ...+++-.+........++.. +.++|++|+|++.+||.|.++
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~------- 503 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA------- 503 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC-------
Confidence 7677778999999999999998875 567899999888888888753 358999999999999999966
Q ss_pred cceEEeccc
Q 021319 303 EGVFRIYGF 311 (314)
Q Consensus 303 ~~~~~~~~~ 311 (314)
|-+.+|-+
T Consensus 504 -grv~l~kL 511 (514)
T KOG2055|consen 504 -GRVHLFKL 511 (514)
T ss_pred -CceeeEee
Confidence 56667654
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=223.74 Aligned_cols=272 Identities=21% Similarity=0.358 Sum_probs=231.4
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
|...+.+.+|. ..++++++.|+++++|+..+. ......+.||.+.|.++.+.. +++.+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence 56688899988 668999999999999998652 344445889999999999975 567999999999999999999
Q ss_pred CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
|.|...+..+...+. ++.-....+++|+.|.++++|++.+++.+.... +..+|.++..+ +..+++++.++.+.+|+
T Consensus 281 g~C~~~l~gh~stv~-~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVR-CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred CcEEEEecCCCceEE-EEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 999988875444432 233456677888999999999999998888776 88889998876 89999999999999999
Q ss_pred CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~ 256 (314)
....+++..+.+|...|+++.+.+. ..+++|+.|++|++||+++. +|+.++.+|..-+..+ ...+++|++++.|+.
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGT 434 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEecccccc
Confidence 9999999999999999999998876 89999999999999999999 9999999988777444 467899999999999
Q ss_pred EEEEECCCCCeEEEEecc--CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 257 IDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 257 v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
|++||..++..++.+... ..|.++++. ...++.++.| |.++||++.
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~--------~~~~l~dl~ 482 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDD--------GSVKLWDLR 482 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecC--------CeeEEEecc
Confidence 999999999999888763 677777776 4677778877 678899885
No 64
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-30 Score=218.64 Aligned_cols=240 Identities=18% Similarity=0.283 Sum_probs=213.0
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKF 140 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 140 (314)
+..|++.|.++.++|.. .+++++--.|.|.|||..+...++.+.....++ ++.|-+--+++++|+.|..|++|+..+.
T Consensus 9 ~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 44588999999999986 488889999999999999999888887766554 4667777889999999999999999999
Q ss_pred eEeeeecc-CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-ceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEE
Q 021319 141 KPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSL 217 (314)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~v 217 (314)
..++..+. .--+++++-||+.++++++++|-.+++|+++..- +.+++.+|+.-|.+++|+|. ...+|+++.|++|++
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 88887653 4458999999999999999999999999997654 56778999999999999994 578999999999999
Q ss_pred eeCCCcEEEEEeeecccCeEEEEEccCC--cEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEec
Q 021319 218 WDISEMLCVRTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 218 wd~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~ 294 (314)
|.+.+..+..++++|+..|++++|-|.| .||+||+.|..++|||..+...++++. |...|+.+.|||.-+++++||+
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9999999999999999999999998754 799999999999999999988888876 5668999999999999999997
Q ss_pred CCcccccccceEEecc
Q 021319 295 DKNKYQADEGVFRIYG 310 (314)
Q Consensus 295 d~~~~~~~~~~~~~~~ 310 (314)
| ||+|||+
T Consensus 248 D--------GTvriWh 255 (794)
T KOG0276|consen 248 D--------GTVRIWN 255 (794)
T ss_pred C--------ccEEEec
Confidence 7 6888886
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9e-30 Score=211.40 Aligned_cols=285 Identities=21% Similarity=0.274 Sum_probs=214.7
Q ss_pred ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee-eEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
.+...+.+|...|.++++.|.|-+|+|||.|-.|++||+.--...-.. ..-.++-...|+.+.|++.+. .|+..+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCc
Confidence 355667899999999999999999999999999999998532111100 111234456689999999864 555667778
Q ss_pred cEEEEeCCCCceeeeE----------EecCce---EEEEEccCCC-EEEEEeCCCcEEEEEccCCeEe-eeecc------
Q 021319 90 TVRLWDARSGKCSQQA----------ELSGEN---INITYKPDGT-HIAVGNRDDELTILDVRKFKPI-HRRKF------ 148 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~----------~~~~~~---~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~------ 148 (314)
..+++|-......... +.++++ .+.+|+|+.+ .+++++.|+++++||+.+.+.. ..++.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 8999997544332211 223333 3467999764 5778899999999999765432 22222
Q ss_pred CcceeeEEeccCCCeEEEEcCCceEEEEeCCCC--Cceee-eeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDT-VVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~-~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~ 223 (314)
...+..++|+++++.+++++.+|.|.+|+.... ++... -..|.. .|+|++||++|++|++-+.|+++++||+++.
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 135788999999999999999999999997543 23222 246776 8999999999999999999999999999876
Q ss_pred E-EEEEeeec--ccCeEEEEEccCCcEEEEecC------CceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEe
Q 021319 224 L-CVRTFTKL--EWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 224 ~-~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~------d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~ 293 (314)
+ ++....+. ..+-..++|||+.++|+||+. .+.+.++|..+-..+.++.. ..+|..+.|||..+.|..++
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 4 34444332 346778999999999999965 37899999999888888765 45799999999999988888
Q ss_pred cCC
Q 021319 294 DDK 296 (314)
Q Consensus 294 ~d~ 296 (314)
.|+
T Consensus 477 gdG 479 (641)
T KOG0772|consen 477 GDG 479 (641)
T ss_pred CCC
Confidence 884
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=188.84 Aligned_cols=233 Identities=21% Similarity=0.368 Sum_probs=192.2
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce---eeeE--EecCceEEEEEccCCCEEEEEeCCCcEEE
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC---SQQA--ELSGENINITYKPDGTHIAVGNRDDELTI 134 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 134 (314)
..+++|.+.+..++|+|..+.+|+|||.|+.||+|+...+.- ...+ ..+..+.+++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 467899999999999997566899999999999999875332 1111 12344567999999999999999999999
Q ss_pred EEccC--CeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCC---CCceeeeeecccceEEEEECCCCCEEEE
Q 021319 135 LDVRK--FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (314)
Q Consensus 135 ~d~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~t 208 (314)
|.-.. ++.+..++ +..++.+++|+++|+++++++.+..+.+|.... ......++.|...|..+.|+|...+|++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 97543 34444443 457899999999999999999999999998753 3456677899999999999999999999
Q ss_pred eeCCCeEEEeeCC---CcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319 209 GSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 209 ~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
++-|.+|++|+-. +..+.+++.+|...|.+++|+|.|..|++++.|+.++||-..+.-. ..++..++.|+|.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~-- 242 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD-- 242 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec--
Confidence 9999999999865 4678999999999999999999999999999999999997653211 1245689999998
Q ss_pred CCeeEEEecCCc
Q 021319 286 YNLLAYAGDDKN 297 (314)
Q Consensus 286 ~~~la~~~~d~~ 297 (314)
...||+++.|..
T Consensus 243 ~~~IaS~ggD~~ 254 (312)
T KOG0645|consen 243 NGVIASGGGDDA 254 (312)
T ss_pred ccceEeccCCCE
Confidence 558899998843
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=198.44 Aligned_cols=202 Identities=23% Similarity=0.417 Sum_probs=183.9
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
.|+..|..++|+.|.++|+||+.++.+||||++.. ..+..++.+|.+.|..+.|...+ +.|+|++.|++||+||.+
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence 68999999999999999999999999999999753 34556889999999999998765 577788999999999999
Q ss_pred CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
++..++.+++...+.++.++++|.+|.++ ..+.|.+||..++.+++.++.+..+.+...+|....+++++++..++.||
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 99999999999999999999999988766 45789999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319 178 YPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (314)
Q Consensus 178 ~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~ 224 (314)
+.+.+.+..+ .+|.++|.|+.|+|+|...|+|+.||+|++|.+..++
T Consensus 253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9988877775 7999999999999999999999999999999986553
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.2e-29 Score=224.57 Aligned_cols=289 Identities=18% Similarity=0.309 Sum_probs=228.4
Q ss_pred eecc-cccEEEEEECCCCCEEEEee--CCCcEEEeecCCCCCC-----c---eeeEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319 16 YTGH-KKKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHG-----K---VKDIELRGHADSVDQLCWDPKHADLIAT 84 (314)
Q Consensus 16 ~~gH-~~~V~~v~~s~~g~~l~s~~--~D~~v~iw~~~~~~~~-----~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s 84 (314)
.-+| ...|.++..+|||..++||| .|+.++||+.+.-... . ........|.+.|.|+.|+|++ .+||+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEee
Confidence 3455 45699999999999999999 9999999997542100 0 1112345799999999999985 79999
Q ss_pred EeCCCcEEEEeCCC----Cc--------------eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319 85 ASGDKTVRLWDARS----GK--------------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (314)
Q Consensus 85 ~~~D~~v~iwd~~~----~~--------------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 145 (314)
||.|+.|.||.... .. +...+ .+...+..++|+|++.++++++.|++|.+|+.++++.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999998762 00 11111 2345567799999999999999999999999999977766
Q ss_pred ec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec------ccceEEEEECCCCCEEEEeeC----CCe
Q 021319 146 RK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA----DSL 214 (314)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~----dg~ 214 (314)
.+ +...+..+.|.|.|+++++.+.|+++.+|...+....+.+..+ ..-.+.+.|+|||.+|++.-. --+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 54 4567889999999999999999999999996654333333222 223678999999999987743 236
Q ss_pred EEEeeCCCcEEEEEeeecccCeEEEEEccC------C-----------cEEEEecCCceEEEEECCCCCeEEEEec--cC
Q 021319 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHT------G-----------DYIASASEDLFIDISNVHTGRTVHQIPC--RA 275 (314)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~------~-----------~~l~s~s~d~~v~v~~~~~~~~~~~~~~--~~ 275 (314)
+.|.+-.+.+.-..+-+|..++.+++|+|. . ..+|+||.|+.+.||.....+++..+.+ ..
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 889888888877888999999999999983 1 1689999999999999988888876553 56
Q ss_pred ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 276 AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 276 ~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
+|..++|+|||..|..+|-| |++.+.+|||
T Consensus 327 SI~DmsWspdG~~LfacS~D--------GtV~~i~Fee 356 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLD--------GTVALIHFEE 356 (942)
T ss_pred ceeeeeEcCCCCeEEEEecC--------CeEEEEEcch
Confidence 89999999999999999988 5666777765
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7e-30 Score=195.38 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=202.5
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---ceEEEEEcc-CCCEEEEEeCCCcEEEE
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKP-DGTHIAVGNRDDELTIL 135 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~~~d~~i~i~ 135 (314)
.++.+|...|.+++|+.++ ..+++|+.|+++++|++...+........+ ....++|.| +...+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 3567899999999999875 689999999999999998775444433322 233466665 56788999999999999
Q ss_pred EccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV 215 (314)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i 215 (314)
|.+..++...+....+-..+.|+|+|.+++++..+..+..++.+..+.+...+ ....+..++|+.++.+++.....|+|
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999999998888888889999999999999999999999988777665443 34557888999999998888889999
Q ss_pred EEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEec
Q 021319 216 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~ 294 (314)
.|......+.++.++.|.....||.|+|+|+|||+||.|..+.+||+..--.++.++ +.-+|+.+.||.+++|||+||+
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence 999999999999999999999999999999999999999999999998877777765 4669999999999999999999
Q ss_pred CCcc
Q 021319 295 DKNK 298 (314)
Q Consensus 295 d~~~ 298 (314)
|..+
T Consensus 252 Dh~I 255 (313)
T KOG1407|consen 252 DHFI 255 (313)
T ss_pred cceE
Confidence 8643
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=209.42 Aligned_cols=242 Identities=19% Similarity=0.352 Sum_probs=206.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
.+.+|.|-.+.|+++.|.+++++++++++|+.+++|+++... ....+.||++.|.++.|..... .+++|+.|.+|
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRti 285 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTI 285 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhcccc-ceeeccccchh
Confidence 445677888899999999999999999999999999997532 2346889999999999986543 48999999999
Q ss_pred EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc
Q 021319 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 171 (314)
++||+.+..|.+.....+....+... ...+++|..|++|++||.+...+......+..+.++..++++..+++++.+.
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence 99999999998876655544444443 4567899999999999999999998888888999999999999999999999
Q ss_pred eEEEEeCCCCCceeeeeec----ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--eEEEEEccCC
Q 021319 172 TVEVLTYPSLRPLDTVVAH----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTISFSHTG 245 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~sp~~ 245 (314)
++.++++........+... ....+.+.|||++.|+|+|+.||.|+||++.++++.+.+.....+ |.+++|+|.|
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 9999999877655554332 234788999999999999999999999999999998888765544 9999999999
Q ss_pred cEEEEecCCceEEEE
Q 021319 246 DYIASASEDLFIDIS 260 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~ 260 (314)
.+|++++.+..+.+|
T Consensus 444 ~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 444 SGLLSADKQKAVTLW 458 (459)
T ss_pred chhhcccCCcceEec
Confidence 999999999999998
No 71
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.7e-30 Score=202.59 Aligned_cols=240 Identities=21% Similarity=0.287 Sum_probs=210.7
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK 139 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (314)
.+.||.+-|.++++.|. ++++++|+.|++++|||+.+|+....+..+ .....+++++-..+|++++.|+.++.||++.
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 46799999999999997 589999999999999999999877766533 3344688999999999999999999999998
Q ss_pred CeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe
Q 021319 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218 (314)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw 218 (314)
.+.+..+. +-..+.++..+|..+.+++++.|..+++||.+....+..+.+|...|..+.+.|....+++|+.|++|++|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 88776653 44578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCc
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
|++.++-..++..|+..|.+++.+|....+||+|.|. ++-|++..|..+..+.. .+-|++++-+.|+-+ ++|++.
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~-~~G~dn-- 380 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVL-VSGGDN-- 380 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceE-EEcCCc--
Confidence 9999999999999999999999999999999999996 89999999998888653 456899999987754 567754
Q ss_pred ccccccceEEeccc
Q 021319 298 KYQADEGVFRIYGF 311 (314)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (314)
|.+..|+-
T Consensus 381 ------g~~~fwdw 388 (460)
T KOG0285|consen 381 ------GSIMFWDW 388 (460)
T ss_pred ------eEEEEEec
Confidence 55666654
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=184.43 Aligned_cols=255 Identities=22% Similarity=0.389 Sum_probs=194.4
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-ceeeEEeecCCCCEEEEEEcCC---CCCEEEEEe-CC
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPK---HADLIATAS-GD 88 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~~-~D 88 (314)
+.-..|++.|+|.+|||+|++|+||++|++|++-..+...+. .-..+++..|.+.|..++|..+ ++.+|+|++ .|
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 334568999999999999999999999999999766543222 2245678889999999999532 244666654 36
Q ss_pred CcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 89 KTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
..|.+-|...|+-...... .+.++++ ++-++-.+++|+.|.+|++||++-...+......+.
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---------------- 225 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---------------- 225 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc----------------
Confidence 7777778877765544433 3444443 555788999999999999999986544333211100
Q ss_pred cCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 247 (314)
++ -.....+.+++++|.|++|++|-.|....+||++.+..++.|..|...|.++.|||...|
T Consensus 226 --~~----------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 226 --DG----------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHY 287 (350)
T ss_pred --CC----------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceE
Confidence 00 012456889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEEEEECCCCCeEEE------EeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 248 IASASEDLFIDISNVHTGRTVHQ------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~------~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
++++|.|..|++-|+.. .+.++ -.|+..+-.+.|||..-.+++.+.|+ ++-+|-++
T Consensus 288 llt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk--------t~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK--------TATLWALN 349 (350)
T ss_pred EEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeeccCcc--------eEEEeccC
Confidence 99999999999999843 22222 23677788899999988888999997 67777654
No 73
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.6e-28 Score=214.63 Aligned_cols=231 Identities=18% Similarity=0.281 Sum_probs=180.0
Q ss_pred eeeecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
..+.||.+.|++++|+| ++++|+||+.|++|++|++...... ......+.+|...|.+++|+|...++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999999754211 1123467899999999999998767999999999
Q ss_pred cEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEE
Q 021319 90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 166 (314)
+|+|||+.+++....+.. ...+.+++|+|++.+|++++.|+.|++||+++.+.+...... .....+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 999999998887666543 345678999999999999999999999999998876654322 22345778888777766
Q ss_pred Ec----CCceEEEEeCCCCC-ceeeeeec-ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEEeee-cccCeEE
Q 021319 167 TT----GNGTVEVLTYPSLR-PLDTVVAH-TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTK-LEWPVRT 238 (314)
Q Consensus 167 ~~----~~g~~~~~~~~~~~-~~~~~~~~-~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~ 238 (314)
++ .++.+++|+..... ++.....+ ...+....|++++++|++++. |+.|++||+.++..+..... ...++..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g 308 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKG 308 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcc
Confidence 54 47899999987654 33333323 334566778999999998874 99999999998876655432 3446778
Q ss_pred EEEccC
Q 021319 239 ISFSHT 244 (314)
Q Consensus 239 ~~~sp~ 244 (314)
++|.|.
T Consensus 309 ~~~~pk 314 (493)
T PTZ00421 309 LCMMPK 314 (493)
T ss_pred eEeccc
Confidence 888884
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.7e-29 Score=201.57 Aligned_cols=278 Identities=20% Similarity=0.315 Sum_probs=232.1
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 100 (314)
..+.++.-.|..+.++|||.|+.+.++|.... ..-..++||...|..+.++|.. ..+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~----q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN----QILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh----hhhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccccc
Confidence 57888888888889999999999999997652 2334689999999999999974 678899999999999987665
Q ss_pred eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
..... .+......+..+|.|.++++++.|++..+.|.++...+..... .....+.+|||+|..|.++..+|.+++|
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 44333 3445566788999999999999999999999998877654433 3558899999999999999999999999
Q ss_pred eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-cCeEEEEEccCCcEEEEecCCc
Q 021319 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDL 255 (314)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d~ 255 (314)
++.....+..+.+|.++|..++|+-+|-+||+++.|+.|++||+++.+..+++...+ .++.+++|.+.|.+|+.++.|-
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 999888888999999999999999999999999999999999999888777775433 3799999999999999999997
Q ss_pred eEEEEECCC--CCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 256 FIDISNVHT--GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 256 ~v~v~~~~~--~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
.|++++-.+ ...+..+. +.+..+.|.|.-+..+++++|-|+. +|||-+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~--------l~~~a~ 505 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI--------LRLYAL 505 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh--------eEEeec
Confidence 777776432 33444433 4567899999999999999999974 777765
No 75
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.6e-28 Score=212.12 Aligned_cols=281 Identities=15% Similarity=0.162 Sum_probs=211.5
Q ss_pred eeeeeccceeee--cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC-------CCcee--eEEeecCCCCEEEEEE
Q 021319 6 IPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGKVK--DIELRGHADSVDQLCW 74 (314)
Q Consensus 6 ~~~~~~~~~~~~--gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~-------~~~~~--~~~~~~h~~~v~~l~~ 74 (314)
..|+++..+... .|-..|+....++|+..+++++.+.....|+..... .++.. ...+.+|.+.|.+++|
T Consensus 4 sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f 83 (493)
T PTZ00421 4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF 83 (493)
T ss_pred ccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE
Confidence 346665554432 356678888888898888999988888889753211 00000 1236799999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCce-------eeeEE-ecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeee
Q 021319 75 DPKHADLIATASGDKTVRLWDARSGKC-------SQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR 145 (314)
Q Consensus 75 ~~~~~~~l~s~~~D~~v~iwd~~~~~~-------~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~ 145 (314)
+|.++++|++|+.|++|++||+..+.. ...+. ....+..++|+|++ ++|++++.|+.|++||+++.+.+..
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~ 163 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV 163 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence 995567999999999999999976531 22222 23445679999985 6899999999999999998877766
Q ss_pred ec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc-eEEEEECCCCCEEEEee----CCCeEEEee
Q 021319 146 RK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGS----ADSLVSLWD 219 (314)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~t~~----~dg~i~vwd 219 (314)
.. +...+.+++|++++..+++++.|+.+++|+....+.+..+.+|... ...+.|.+++..+++++ .|+.|++||
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 54 4567999999999999999999999999999988888788888764 34677888877776554 478999999
Q ss_pred CCCcEE-EEEeeec-ccCeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEec--cCccceeEEcCCC
Q 021319 220 ISEMLC-VRTFTKL-EWPVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKY 286 (314)
Q Consensus 220 ~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~--~~~i~~v~~~~~~ 286 (314)
+++... +.....+ ...+....|+|++.+|++++. |+.|++||+.+++.+..... ..++..++|.|..
T Consensus 244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 986543 3332222 234566679999999999884 99999999999887765433 3468889998854
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=187.71 Aligned_cols=241 Identities=22% Similarity=0.349 Sum_probs=200.9
Q ss_pred eeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319 7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (314)
Q Consensus 7 ~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 86 (314)
|.+...+++|.||..+|.+++.+.|...|++||.|+.+.+||++++. ...++.+|.+.|+.+.|+.. ..+++||+
T Consensus 46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sgs 120 (307)
T KOG0316|consen 46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASGS 120 (307)
T ss_pred ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEecc
Confidence 55667889999999999999999999999999999999999998753 23468999999999999965 67999999
Q ss_pred CCCcEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319 87 GDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.|.++|+||.++........+ ...+.++.. .+..++.|+.||+++.||+|..+.... ..+.+++++.++++++.
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc 197 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNC 197 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCE
Confidence 999999999987654332222 233344443 467899999999999999998765443 34568999999999999
Q ss_pred EEEEcCCceEEEEeCCCCCceeeeeecccceE--EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC-eEEEE
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTIS 240 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~--~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~ 240 (314)
.++++-++.+++.+-.+.+.+..+.+|...-+ ..++++....+++|+.||.|.+||+.+.+.+..+..+... +.+++
T Consensus 198 ~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS 277 (307)
T ss_pred EEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence 99999999999999999999999999876544 4467778889999999999999999999988888877766 89999
Q ss_pred EccCCcEEEEecCCc
Q 021319 241 FSHTGDYIASASEDL 255 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~ 255 (314)
++|.-.-|++|..-+
T Consensus 278 ~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 278 CHPTMDDFITATGHG 292 (307)
T ss_pred cccCccceeEecCCc
Confidence 999987777765443
No 77
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2e-27 Score=210.30 Aligned_cols=246 Identities=17% Similarity=0.212 Sum_probs=188.1
Q ss_pred eeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce--------eeeEE-ec
Q 021319 38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS 108 (314)
Q Consensus 38 ~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------~~~~~-~~ 108 (314)
||.++.|++|+.... .....+.+|.++|.+++|+|..+++|+||+.|++|++||+.++.. ...+. +.
T Consensus 50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 667889999987542 234467899999999999997678999999999999999976421 11122 23
Q ss_pred CceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee
Q 021319 109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187 (314)
Q Consensus 109 ~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 187 (314)
..+..++|+|++..+ ++++.|+.|++||+++.+.+....+...+.+++|+++|..+++++.++.+++|+.+..+.+..+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 456679999998764 6889999999999999887766666678999999999999999999999999999988888888
Q ss_pred eecccceEE-----EEECCCCCEEEEeeCCC----eEEEeeCCC-cEEEEEeeecc--cCeEEEEEccCCcEEEEecCCc
Q 021319 188 VAHTAGCYC-----IAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTFTKLE--WPVRTISFSHTGDYIASASEDL 255 (314)
Q Consensus 188 ~~~~~~i~~-----i~~~~~~~~l~t~~~dg----~i~vwd~~~-~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~d~ 255 (314)
.+|.+.+.+ ..|++++.++++++.|+ .|++||++. ...+..+.... ..+.-.-..+++.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 889876433 34568889999887774 799999985 44454443222 2222233345689999999999
Q ss_pred eEEEEECCCCCe--EEEEeccCccceeEEcCCCC
Q 021319 256 FIDISNVHTGRT--VHQIPCRAAMNSVEWNPKYN 287 (314)
Q Consensus 256 ~v~v~~~~~~~~--~~~~~~~~~i~~v~~~~~~~ 287 (314)
.|++|++..+.. +..+.+..+..+++|.|+..
T Consensus 286 tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 999999977642 22334456789999999654
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.7e-30 Score=193.13 Aligned_cols=246 Identities=24% Similarity=0.388 Sum_probs=186.3
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE-cCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~D~~v~ 92 (314)
+.-++|++.|++++..--|++|+||+.|++|||+.+....+ .....++.||.++|..++| +|..+++|+|++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 44578999999999999999999999999999999976543 2345689999999999999 566788999999999999
Q ss_pred EEeCCCCceeeeEEe---cCceEEEEEccC--CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 93 LWDARSGKCSQQAEL---SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 93 iwd~~~~~~~~~~~~---~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
||...+++..+.... .....+++|.|. |-.|++++.||.|.+++.+....-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------------ 139 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------------ 139 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------------
Confidence 999988865444332 334445666664 567888888888888876543000
Q ss_pred cCCceEEEEeCCCCCceeeeeecccceEEEEECCC---C-----------CEEEEeeCCCeEEEeeCCCcE--EEEEeee
Q 021319 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM---G-----------RYFAVGSADSLVSLWDISEML--CVRTFTK 231 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~t~~~dg~i~vwd~~~~~--~~~~~~~ 231 (314)
........|+-++++++|.|. | +.|++|+.|..|+||+..... .-+++.+
T Consensus 140 --------------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 140 --------------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred --------------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 001112345555555555554 2 569999999999999987652 2345888
Q ss_pred cccCeEEEEEccCC----cEEEEecCCceEEEEECCC------CCeEEEEeccCccceeEEcCCCCeeEEEecCCcccc
Q 021319 232 LEWPVRTISFSHTG----DYIASASEDLFIDISNVHT------GRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 232 ~~~~v~~~~~sp~~----~~l~s~s~d~~v~v~~~~~------~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
|..-|+.++|.|.- .++||+|+|+.+.||.... .++++.+ ...+..+.||+.|++||.++.|.+...
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtl 282 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTL 282 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEE
Confidence 99999999999974 6899999999999998653 1233332 357999999999999999998865544
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-28 Score=196.27 Aligned_cols=250 Identities=18% Similarity=0.241 Sum_probs=202.0
Q ss_pred ccceeeecccccEEEEEECCCC---CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 11 LHSREYTGHKKKVHSVAWNCTG---TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g---~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.+++.+.||.++|.+++|--.. ..|+++|.|.++++|..+....-........||.++|.+++..++ +..++|||.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~ 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFCSGSW 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEEeecc
Confidence 4667789999999999985433 359999999999999887644322122234599999999999887 468999999
Q ss_pred CCcEEEEeCCCCc-------------------------eeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe
Q 021319 88 DKTVRLWDARSGK-------------------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (314)
Q Consensus 88 D~~v~iwd~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 141 (314)
|..++||+..+.. ....+. +......+.|.+ ...+++++.|.+|+.||+.+.+
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 9999999932110 000111 112334566766 7788999999999999999999
Q ss_pred EeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC---CceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEE
Q 021319 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSL 217 (314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~v 217 (314)
.+.++..+....++..++..+.+++++.+..+++||-+.. -...++.+|...|.++.|+|... +|++++.|+++++
T Consensus 293 ~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 293 LKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred ceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 9888888999999999999999999999999999997543 24567889999999999999765 5889999999999
Q ss_pred eeCCCcE-EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319 218 WDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 218 wd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~ 263 (314)
||++..+ .+..+.+|...|.++.|+ ++.+++||+.|..++++...
T Consensus 373 WDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999877 788889999999999994 57899999999999998643
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.6e-26 Score=194.42 Aligned_cols=268 Identities=13% Similarity=0.123 Sum_probs=199.8
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 111 (314)
+..++|++.|+.|++||+++.. ....+.++. .+..++|+|++..++++++.|+.|++||..+++...........
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~----~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE----VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc----eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 3578899999999999986532 222344444 36779999986545577888999999999988776655444445
Q ss_pred EEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc-eEEEEeCCCCCceeeeee
Q 021319 112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVA 189 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 189 (314)
..++++|+++.++++ ..++.+.+||+++.+.+........+..++|+|++..++++..++ .+..|+....+......
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~- 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL- 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence 678899999987665 568899999999887776666555678899999999998887765 45667776554443332
Q ss_pred cccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeec-------ccCeEEEEEccCCcEEEEe-cCCceEEEE
Q 021319 190 HTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKL-------EWPVRTISFSHTGDYIASA-SEDLFIDIS 260 (314)
Q Consensus 190 ~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~s~-s~d~~v~v~ 260 (314)
....+.+++|+|++++++ ++..++.|++||+.+++++..+... ......++|+|++++++.+ +.+..+.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 234567899999999875 4456899999999988776655421 1123468899999986544 556789999
Q ss_pred ECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 261 NVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
|..+++.+..+.....+.+++|+|++..|++++.+ +|+++||+++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-------~~~i~v~d~~ 279 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-------SNDVSVIDVA 279 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-------CCeEEEEECC
Confidence 99998887766666689999999999999877532 3688899875
No 81
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.8e-27 Score=209.32 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=175.5
Q ss_pred cceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCc----eeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319 12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATAS 86 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 86 (314)
....+.+|.+.|.+++|+|+ +++|+||+.|++|+||++....... .....+.+|...|.+++|+|.+..++++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 34567899999999999997 7899999999999999986532110 122357899999999999998766778999
Q ss_pred CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-Ccce-----eeEEeccC
Q 021319 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEV-----NEIAWNMT 160 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----~~~~~~~~ 160 (314)
.|++|++||+++++..........+.+++|+|+|.+|++++.|+.+++||+++.+.+..... ...+ ....++++
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999988766665556677899999999999999999999999999887765432 2221 22334578
Q ss_pred CCeEEEEcCC----ceEEEEeCCC-CCceeeeeecc--cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeee
Q 021319 161 GEMFFLTTGN----GTVEVLTYPS-LRPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK 231 (314)
Q Consensus 161 ~~~~~~~~~~----g~~~~~~~~~-~~~~~~~~~~~--~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~ 231 (314)
+..+++++.+ +.+++|++.. .+++..+..+. +.+...-..+++.++++|+.|+.|++|++..+.. +..+.
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~- 304 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK- 304 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-
Confidence 8888887655 4799999875 45555443322 2233333355688999999999999999976642 22222
Q ss_pred cccCeEEEEEccCC
Q 021319 232 LEWPVRTISFSHTG 245 (314)
Q Consensus 232 ~~~~v~~~~~sp~~ 245 (314)
+..++..++|.|.-
T Consensus 305 s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 305 SCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCCccceEEcccc
Confidence 45678899999964
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-27 Score=182.39 Aligned_cols=234 Identities=19% Similarity=0.290 Sum_probs=207.7
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR 138 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (314)
+.++||..+++.+.++.+ +++|.|++.|.+..+|-..+|+.+.+... .+.+.++..+.+.+.+++|+.|.++++||.+
T Consensus 4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 357899999999999976 58999999999999999888988777654 4567789999999999999999999999999
Q ss_pred CCeEeeeeccCcceeeEEeccCCCeEEEEcC-----CceEEEEeCC-------CCCceeeeeecccceEEEEECCCCCEE
Q 021319 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYP-------SLRPLDTVVAHTAGCYCIAIDPMGRYF 206 (314)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l 206 (314)
+.+.+...+.+.++..+.|+++|+++++..+ .+.+.+++.+ ..+|...+..+...++.+-|+|.++.+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999999998865 4688888876 345677777788899999999999999
Q ss_pred EEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319 207 AVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 207 ~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
++|..||.|..||.++++. ++.-..|...|+.++++|+..+++|+|.|...++||+.+-..++++....+||+++++|.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 9999999999999999744 555567888999999999999999999999999999999999999999999999999997
Q ss_pred CCeeEEEec
Q 021319 286 YNLLAYAGD 294 (314)
Q Consensus 286 ~~~la~~~~ 294 (314)
...++-+|.
T Consensus 243 ~d~VilgGG 251 (327)
T KOG0643|consen 243 LDHVILGGG 251 (327)
T ss_pred cceEEecCC
Confidence 766665553
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=199.02 Aligned_cols=244 Identities=19% Similarity=0.309 Sum_probs=203.7
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
+.+...+..|++++|-.||.+|++|+..|.|+|+|+.+ +..-..+.+|..+|....|+|.++..+++|+.|+.+++
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 33556678999999999999999999999999999653 22334578999999999999999999999999999999
Q ss_pred EeCCCCceeeeEEecC-ceEEEEEccCC-CEEEEEeCCCcEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 94 WDARSGKCSQQAELSG-ENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 94 wd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
||+.+.........+. -+-+.+++|.. ..+++|+.||.|++||.+.. .++..+.++.++..+.+-|.|..++++++
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG- 216 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG- 216 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-
Confidence 9998887532332222 33467788764 47789999999999999987 66777889999999999999888776654
Q ss_pred ceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319 171 GTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249 (314)
Q Consensus 171 g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 249 (314)
..+++||+..+ +.+.....|...|+|+++..+++.|++|+-|+.|++||+.+.+.+..+ ....||.+++.+|+++.++
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEE
Confidence 67999999744 444445569999999999999999999999999999999888888776 4678999999999999999
Q ss_pred EecCCceEEEEECC
Q 021319 250 SASEDLFIDISNVH 263 (314)
Q Consensus 250 s~s~d~~v~v~~~~ 263 (314)
.|-.||.+.+-...
T Consensus 296 iGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 296 IGMSNGLVSIRRRE 309 (487)
T ss_pred Eecccceeeeehhh
Confidence 99999998887544
No 84
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=188.07 Aligned_cols=273 Identities=17% Similarity=0.320 Sum_probs=215.0
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
..|+.|++-|.+||.|..||.|.|||+.+.. ....+.+|-.+|.+++|++++ ..|+|+|.|..|++||+..|.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999998754 233578999999999999985 68889999999999999999999
Q ss_pred eeEEecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeec-------cCcceeeEEeccCCCeEEEEcCCceEE
Q 021319 103 QQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-------FGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (314)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (314)
++..+.+.+..+.|.|. .+..++.-.+..-.+.++..++ ++.. ......+..|.+.|+++++|...|.+.
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 99999999999999884 3444444455555555554422 2211 122234456889999999999999999
Q ss_pred EEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE---------EEeee--cccCeEEEEEc
Q 021319 175 VLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV---------RTFTK--LEWPVRTISFS 242 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~---------~~~~~--~~~~v~~~~~s 242 (314)
+++..+.+.+..+.... ..|..+-++..|+.|++-++|..||.|+++..... +++.. -+..-.+++||
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 99999988877776555 67899999999999999999999999998642211 11110 12245789999
Q ss_pred cCCcEEEEecC-CceEEEEECCCCCeEEEEec-c-CccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 243 HTGDYIASASE-DLFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 243 p~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~-~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
.+|.|++.++. ...++||....|.+++.+.. + .....|.|+|-.+.+++- +.|++.||..
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si---------~sg~v~iw~~ 321 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI---------ASGVVYIWAV 321 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec---------cCCceEEEEe
Confidence 99999998864 57899999999999988764 3 357899999988888766 2478889975
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-27 Score=184.63 Aligned_cols=261 Identities=17% Similarity=0.290 Sum_probs=203.8
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV 91 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v 91 (314)
...+..|.+.|++|+. ++.+++|||.|-+|+|||+.... +.-.+-.|.+.|+++.|.+.- .+.|+||+.||.|
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh----hhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 4456789999999995 68999999999999999997532 223456799999999998753 2378899999999
Q ss_pred EEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
.+|+...-.+...+.. .+.+..++.+|.+++-++.+.|+.+++||+-+++.-...........+.|+|.|.+|++...+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 9999887776666544 344557999999999999999999999999888766555555556669999999998887654
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE--ccCCcEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYI 248 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l 248 (314)
.+.+|.+.....+..+ ..+..+.|+.|. ++..|++|..|+.|++||.++..++..+..|+..|.++.+ .|++.||
T Consensus 190 -~i~i~q~d~A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred -EEEEEecccHhHhhhh-hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 5677776554333222 223456677766 4668899999999999999999899999999999999984 4789999
Q ss_pred EEecCCceEEEEECCCC-----CeEEEEeccCccceeEE
Q 021319 249 ASASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEW 282 (314)
Q Consensus 249 ~s~s~d~~v~v~~~~~~-----~~~~~~~~~~~i~~v~~ 282 (314)
+|+|.||.|.|||+... +++-.+....+++|+.-
T Consensus 267 vTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred EEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 99999999999999765 34444444555555543
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=186.08 Aligned_cols=233 Identities=21% Similarity=0.313 Sum_probs=193.2
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~v~ 92 (314)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+. +...+..|.++|..+.|.+.. ...|++||.|++||
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence 444578999999999999999999999999999999864 233567899999999997643 24889999999999
Q ss_pred EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-eee--ccCcceeeEEeccCCCeEEEEcC
Q 021319 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRR--KFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
.||.+....+.++.+.+...++.. ....++++..+..|.++++++.... ++. ....++++++...+.+.++.++-
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 999998888888877776665543 3457889999999999999765433 222 34578999999999999999999
Q ss_pred CceEEEEeCCCC--Cceeeeeecc---------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 170 NGTVEVLTYPSL--RPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 170 ~g~~~~~~~~~~--~~~~~~~~~~---------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
+|++.+...... +.-.++..|. +.|++|+|+|.-..|+|++.||++.+||-.....+++.+.+..+|.+
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 999998877654 3334556665 35788999999889999999999999998888888888999999999
Q ss_pred EEEccCCcEEEEecC
Q 021319 239 ISFSHTGDYIASASE 253 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~ 253 (314)
.+|+.+|.++|.|..
T Consensus 299 c~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 299 CSFNRNGSIFAYALG 313 (347)
T ss_pred eEecCCCCEEEEEee
Confidence 999999999998854
No 87
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-27 Score=200.88 Aligned_cols=290 Identities=20% Similarity=0.290 Sum_probs=221.3
Q ss_pred eeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEE
Q 021319 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (314)
Q Consensus 6 ~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 85 (314)
-||++.+...|.||++.|.++...|.|..|++|+.||+||||.+.++.+ +.... -...|.+++|+|.....++..
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--vr~~~---~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--VRTVQ---FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--EEEEe---ecceeEEEEecCCCCceeEEE
Confidence 4899999999999999999999999999999999999999999987532 22222 245799999999876555555
Q ss_pred eCCCcEEEEeCCCCcee--------------------------------------eeEEecCceEEEEEccCCCEEEEEe
Q 021319 86 SGDKTVRLWDARSGKCS--------------------------------------QQAELSGENINITYKPDGTHIAVGN 127 (314)
Q Consensus 86 ~~D~~v~iwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (314)
+.+..+.|-+..-|..+ ..+.....+..+.|+..|.+|++..
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 55555666554322100 0011112233577999999999876
Q ss_pred CCC---cEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC
Q 021319 128 RDD---ELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG 203 (314)
Q Consensus 128 ~d~---~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 203 (314)
.++ .+.|.++...+..... +....+..+.|+|...++++++. ..+++|++...+.++.+......+..++++|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 543 5888888765544333 44567899999999999888765 578999997766666666666779999999999
Q ss_pred CEEEEeeCCCeEEEeeCCC-cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC-C--------eEEEEec
Q 021319 204 RYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-R--------TVHQIPC 273 (314)
Q Consensus 204 ~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~-~--------~~~~~~~ 273 (314)
.-|+.|+.|+.+..+|+.- .+..+++..|...+++++|++.-.++||||.|+.+.|+..+-- . ++..+..
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 9999999999999999974 3556788889999999999999999999999999999975421 1 1222221
Q ss_pred -----cCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 274 -----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 274 -----~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
...|..+.|||..+.|.++|.| ||+|+|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd--------~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGAD--------GTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCC--------ceEEee
Confidence 2247788899999999999988 689988
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-27 Score=196.43 Aligned_cols=260 Identities=22% Similarity=0.397 Sum_probs=190.8
Q ss_pred ccceeeecccccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCC------ceeeEEeecCCCCEEEEEEcCCCCCEEE
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIA 83 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 83 (314)
+.+...--|.+.|+.+.+.|+... ++|.+..+.|.|||...+..- ..+.+++.||.+.=+.|+|++.....++
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 334444569999999999999765 666778899999998754321 1234578999998889999998888999
Q ss_pred EEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-C
Q 021319 84 TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-E 162 (314)
Q Consensus 84 s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (314)
+++.|++|.+||+...... ...+. -..++ ..+...++.++|++.. .
T Consensus 195 s~~~d~~i~lwdi~~~~~~------~~~~~-----------------p~~~~----------~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKE------DKVVD-----------------PKTIF----------SGHEDVVEDVAWHPLHED 241 (422)
T ss_pred eccCCCcEEEEeccccccC------Ccccc-----------------ceEEe----------ecCCcceehhhccccchh
Confidence 9999999999999754321 00000 00000 0122345666666654 3
Q ss_pred eEEEEcCCceEEEEeCC--CCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEE
Q 021319 163 MFFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRT 238 (314)
Q Consensus 163 ~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 238 (314)
.|.+.++++.+.+||.+ ..++.....+|..+++|++|+|- +..||||+.|++|++||+++. +++.++..|+..|..
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 44455666777777776 45566667789999999999994 567999999999999999875 467889999999999
Q ss_pred EEEccCC-cEEEEecCCceEEEEECCC-CCe--------------EEEEeccCccceeEEcCCCCe-eEEEecCCccccc
Q 021319 239 ISFSHTG-DYIASASEDLFIDISNVHT-GRT--------------VHQIPCRAAMNSVEWNPKYNL-LAYAGDDKNKYQA 301 (314)
Q Consensus 239 ~~~sp~~-~~l~s~s~d~~v~v~~~~~-~~~--------------~~~~~~~~~i~~v~~~~~~~~-la~~~~d~~~~~~ 301 (314)
|.|||.. ..|||++.|+.+.|||+.. |+. +..-.|...|+.+.|+|+.+. +++..+|
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------ 395 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------ 395 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------
Confidence 9999975 6899999999999999864 211 111124568999999998766 4666655
Q ss_pred ccceEEeccc
Q 021319 302 DEGVFRIYGF 311 (314)
Q Consensus 302 ~~~~~~~~~~ 311 (314)
+.++||--
T Consensus 396 --N~LqIW~~ 403 (422)
T KOG0264|consen 396 --NILQIWQM 403 (422)
T ss_pred --ceEEEeec
Confidence 78899965
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.4e-27 Score=192.94 Aligned_cols=277 Identities=15% Similarity=0.197 Sum_probs=218.0
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-cee-----------eEEe--ecCCCCEEEEEEcCCC
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVK-----------DIEL--RGHADSVDQLCWDPKH 78 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-~~~-----------~~~~--~~h~~~v~~l~~~~~~ 78 (314)
.+.+..|.-.|.+|+++|++++.++++.|++|.=|++.++... .+. ..+. ++|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4667889999999999999999999999999999998654311 000 0111 3789999999999975
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEE
Q 021319 79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIA 156 (314)
Q Consensus 79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~ 156 (314)
.+|++|+.|..|.|||.++...++.+. +.+.+.+++|......+++++.|.++++|++.....+.+. .+...+..+.
T Consensus 215 -kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 -KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred -cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 799999999999999999988766644 3456678999989999999999999999998765444332 2333455555
Q ss_pred eccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-----
Q 021319 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----- 231 (314)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----- 231 (314)
.......+-++..|+++++|..+... ...+.++.+.+-|++|-. ...|++|+.||.|.+|++.+.+.+.+...
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 55566777788899999999995443 335668888999999974 55889999999999999988776654421
Q ss_pred -------cccCeEEEEEccCCcEEEEecCCceEEEEECCCC----CeEEEEeccCccceeEEcCCCCeeEEE
Q 021319 232 -------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTG----RTVHQIPCRAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 232 -------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~----~~~~~~~~~~~i~~v~~~~~~~~la~~ 292 (314)
+..-|++++-.|...++||||.+|.|++|-+..+ .++..++..+-||+++|+++++.|++|
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 1125889999999999999999999999999887 345556667889999999999965444
No 90
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.2e-29 Score=197.93 Aligned_cols=228 Identities=18% Similarity=0.350 Sum_probs=189.4
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe
Q 021319 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (314)
Q Consensus 65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (314)
....|+|+.+.. +.++||..|.+|+|||.++..|...+.. .+..+++.| +.+.+++|+.|.++.+||..+.+++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 456799999863 4688999999999999998888776543 445556655 5669999999999999999999988
Q ss_pred eeecc-CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 144 HRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
....+ ...+..+.| ...++++++.|..+.+|++..... ...+.+|..+++.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 77543 344555554 467889999999999999865442 34467999999999986 56999999999999999
Q ss_pred CCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcc
Q 021319 220 ISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK 298 (314)
Q Consensus 220 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~ 298 (314)
+.+++++.++.+|...|-|+.+ .+++++|||.|..|++||.+.|..++.+. |...|+++.|. .+.+++|+-|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD--- 419 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD--- 419 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc---
Confidence 9999999999999988887765 68999999999999999999999988875 45679999994 6778899977
Q ss_pred cccccceEEeccccC
Q 021319 299 YQADEGVFRIYGFEN 313 (314)
Q Consensus 299 ~~~~~~~~~~~~~~~ 313 (314)
|++|||+|+.
T Consensus 420 -----GkikvWdl~a 429 (499)
T KOG0281|consen 420 -----GKIKVWDLQA 429 (499)
T ss_pred -----ceEEEEeccc
Confidence 7899999974
No 91
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-26 Score=181.15 Aligned_cols=268 Identities=19% Similarity=0.350 Sum_probs=200.6
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEE-cCCCCCEEEEEeCCCcEEEE
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~D~~v~iw 94 (314)
-.+|.+-|+++.|.+.|.++|||+.|++|+|||.+.........-..+.|.++|..+.| +|.-++.+|+++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 36899999999999999999999999999999976555555555678899999999999 56668899999999999999
Q ss_pred eCCCC-------ceeeeEEe---cCceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEe------eeec--------c
Q 021319 95 DARSG-------KCSQQAEL---SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPI------HRRK--------F 148 (314)
Q Consensus 95 d~~~~-------~~~~~~~~---~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~--------~ 148 (314)
..... +.++...+ .+....+.|.| -|-.|++++.||.++||+....-.+ +.++ .
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 76321 11222222 34455677877 4678899999999999987543222 2222 3
Q ss_pred CcceeeEEeccC---CCeEEEEcCC-----ceEEEEeCCC----CCceeeeeecccceEEEEECCCC----CEEEEeeCC
Q 021319 149 GYEVNEIAWNMT---GEMFFLTTGN-----GTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMG----RYFAVGSAD 212 (314)
Q Consensus 149 ~~~~~~~~~~~~---~~~~~~~~~~-----g~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~----~~l~t~~~d 212 (314)
..+..++.|++. .+.++++..+ +.+.+|.... -..+.++..|..+|+.++|.|+- .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 345678899865 3566666654 5777886532 23456677999999999999963 369999999
Q ss_pred CeEEEeeCCCc--------------------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC---CeEE
Q 021319 213 SLVSLWDISEM--------------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG---RTVH 269 (314)
Q Consensus 213 g~i~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~---~~~~ 269 (314)
| |+||++... +.+..+.+|...|..++|+-.|..|+|.+.||.|++|..... +...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~s 327 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTS 327 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeee
Confidence 9 999998631 234456788889999999999999999999999999976543 3334
Q ss_pred EEeccCccceeEEcC
Q 021319 270 QIPCRAAMNSVEWNP 284 (314)
Q Consensus 270 ~~~~~~~i~~v~~~~ 284 (314)
.+...+.+..-.|++
T Consensus 328 v~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 328 VLKAEGSVTKPDFSQ 342 (361)
T ss_pred EEeccCCCCCccccc
Confidence 455555666666654
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-26 Score=198.16 Aligned_cols=271 Identities=18% Similarity=0.283 Sum_probs=219.4
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
.+-+.|+. .+.++.|. ...|.+|+..+. .+..+. .-+.+.|+++.|++++ .+|+.|..+|.|.|||....+..
T Consensus 180 ~nlldWss-~n~laVal-g~~vylW~~~s~---~v~~l~-~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVAL-GQSVYLWSASSG---SVTELC-SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT 252 (484)
T ss_pred hhHhhccc-CCeEEEEe-cceEEEEecCCC---ceEEeE-ecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc
Confidence 33456773 34455554 468999997653 233222 2237899999999975 68999999999999999877766
Q ss_pred eeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-e-ccCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319 103 QQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178 (314)
Q Consensus 103 ~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (314)
..... ...+.+++|. +..+.+|+.++.|..+|++..+.... . .+..++..++|++++.+++.++.|+.+.+|+.
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 66554 3445568887 77899999999999999998776554 3 35678999999999999999999999999999
Q ss_pred CCCCceeeeeecccceEEEEECC-CCCEEEEee--CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec--C
Q 021319 179 PSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--E 253 (314)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~ 253 (314)
...++...+..|...|.+++|+| ....||+|+ .|++|++||..++++++.+. ....|..|.|++..+-|+++. .
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence 88888999999999999999999 456788764 58999999999999887763 345699999999987777664 4
Q ss_pred CceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 254 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 254 d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+..|.||+..+.+++..+. |..+|..++++|++..+++|+.| +|+|.|.+
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D--------ETlrfw~~ 460 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD--------ETLRFWNL 460 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc--------CcEEeccc
Confidence 5689999999988777764 67789999999999999999988 68999987
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.2e-28 Score=205.49 Aligned_cols=277 Identities=16% Similarity=0.238 Sum_probs=217.7
Q ss_pred cccccEE---EEEECCC-CCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 18 GHKKKVH---SVAWNCT-GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 18 gH~~~V~---~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
.|...|. .++.++. +++|.|||.||+|++|++...... ..-...++.|++-|+++..... ++.|+|+|.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence 4666666 6666654 566999999999999998643321 1112356789999998887655 4578899999999
Q ss_pred EEEeCCCC--ceeeeEEecC-ceEEEEE-ccCCCEEEEEeCCCcEEEEEccCCe--Eeeee----------ccCcceeeE
Q 021319 92 RLWDARSG--KCSQQAELSG-ENINITY-KPDGTHIAVGNRDDELTILDVRKFK--PIHRR----------KFGYEVNEI 155 (314)
Q Consensus 92 ~iwd~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~----------~~~~~~~~~ 155 (314)
++|+...+ -|...+..+. -+.++++ .++..++|+|+.|+.|.+||+.... .+.+. -....+.++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 99998877 3444443333 3456777 6788899999999999999998652 22111 112357888
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 235 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (314)
+..+.+..++.|+..+.+++|+....+.+..+.+|...|.++.++.||+.++++++||+|++||+...+|+.++..|+..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEECCCC-CeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
|.++..+|+-..+.+|+.|+.|..-|+.+. +....++...+|..+..+-+.+.+-.+..|
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc
Confidence 999999999999999999999999999874 333444445677777777444443444444
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-26 Score=180.17 Aligned_cols=241 Identities=23% Similarity=0.335 Sum_probs=197.9
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeC--CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~--D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
.+.+..++-.|..++|....+.++.++. |.+||.-++.... -..-+.||...|..++.+|.+ +.++|++.|++
T Consensus 49 ~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk----ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~t 123 (311)
T KOG1446|consen 49 VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK----YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKT 123 (311)
T ss_pred eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc----eEEEcCCCCceEEEEEecCCC-CeEEecccCCe
Confidence 3444455568999999988888888876 9999999886522 223578999999999999986 78899999999
Q ss_pred EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe--Eeeeec----cCcceeeEEeccCCCeE
Q 021319 91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK----FGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 164 (314)
||+||++..+|.......+..+ ++|.|+|-++|++...+.|++||+|... |..... ...+...+.|+++|+.+
T Consensus 124 vrLWDlR~~~cqg~l~~~~~pi-~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i 202 (311)
T KOG1446|consen 124 VRLWDLRVKKCQGLLNLSGRPI-AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSI 202 (311)
T ss_pred EEeeEecCCCCceEEecCCCcc-eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence 9999999888877776655444 7799999999999988899999999763 222222 23567889999999999
Q ss_pred EEEcCCceEEEEeCCCCCceeeeeecccce---EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEE
Q 021319 165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTIS 240 (314)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~ 240 (314)
+++...+.+++.+...+..+.++..+..+- ....|+||++++.+|+.||+|++|++++++.+..+.+ +..++.++.
T Consensus 203 LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 203 LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 999999999999998888777776665432 5778999999999999999999999999999988887 578999999
Q ss_pred EccCCcEEEEecCCceEEEEE
Q 021319 241 FSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~~v~v~~ 261 (314)
|+|...+++|++.. +..|-
T Consensus 283 fnP~~~mf~sa~s~--l~fw~ 301 (311)
T KOG1446|consen 283 FNPRYAMFVSASSN--LVFWL 301 (311)
T ss_pred cCCceeeeeecCce--EEEEe
Confidence 99999999988776 45553
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.5e-27 Score=209.88 Aligned_cols=248 Identities=20% Similarity=0.300 Sum_probs=199.7
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC--------------CceeeEEeecCCCCEEEEEEcCCCCCE
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------------GKVKDIELRGHADSVDQLCWDPKHADL 81 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~--------------~~~~~~~~~~h~~~v~~l~~~~~~~~~ 81 (314)
...|.+.|+|+.|+|||++||+||.|+.|.||+...... .+.....+.+|...|.+++|+|+ ..+
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~ 143 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSL 143 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccE
Confidence 457999999999999999999999999999999873100 12234578899999999999997 479
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCc-------cee
Q 021319 82 IATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-------EVN 153 (314)
Q Consensus 82 l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~ 153 (314)
++|+|.|++|.|||.++..+......+ +.+..+.|.|-|+++++-+.|+++++|+.......+.+..++ ...
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 999999999999999988776666543 445569999999999999999999999988776666554322 256
Q ss_pred eEEeccCCCeEEEEcC----CceEEEEeCCCCCceeeeeecccceEEEEECCC-----CC------------EEEEeeCC
Q 021319 154 EIAWNMTGEMFFLTTG----NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GR------------YFAVGSAD 212 (314)
Q Consensus 154 ~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~t~~~d 212 (314)
-+.|+|+|.++++... ...+.++.-..-+.-..+.+|..++.++.|+|. .+ .+|+|++|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 6889999999987653 346666666555556678899999999999873 12 68999999
Q ss_pred CeEEEeeCCCcEEEEEee-ecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 213 SLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 213 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
++|.||.....+.+.... -....|.+++|+|||.-|+.+|.||.|.+..+..
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 999999986665543322 2356799999999999999999999999999875
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.2e-26 Score=181.70 Aligned_cols=228 Identities=21% Similarity=0.366 Sum_probs=186.6
Q ss_pred ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~ 96 (314)
..|..++.+++|.+ ...+++|+.||.||.+|+++... ..+..|..+|.++...+.. +.+++||+|++|++||.
T Consensus 51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDP 123 (323)
T ss_pred eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEec
Confidence 35899999999986 56799999999999999987432 2466899999999999764 57889999999999999
Q ss_pred CCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee---eeccCcceeeEEeccCCCeEEEEcCCceE
Q 021319 97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGEMFFLTTGNGTV 173 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 173 (314)
+...+.........+.++ +-.++.|++|+.+..+.+||+|+..... .....+++++++..|.+.-+++++-+|++
T Consensus 124 R~~~~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 124 RNKVVVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV 201 (323)
T ss_pred cccccccccccCceEEEE--eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence 975555444444444444 4468899999999999999999865433 33456789999999999999999999999
Q ss_pred EEEeCCCC----Cceeeeeecc---------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319 174 EVLTYPSL----RPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 174 ~~~~~~~~----~~~~~~~~~~---------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 240 (314)
.+=.+... .....+..|. .+|++|+|+|--..||||+.||.|.+||+...+.++++.+.+..|.+++
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS 281 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence 87655544 2233455554 3589999999988999999999999999999999999988888899999
Q ss_pred EccCCcEEEEecC
Q 021319 241 FSHTGDYIASASE 253 (314)
Q Consensus 241 ~sp~~~~l~s~s~ 253 (314)
|+.+|..||.|+.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999976
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=3.3e-25 Score=186.42 Aligned_cols=264 Identities=14% Similarity=0.179 Sum_probs=197.0
Q ss_pred eeeecccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
+.+.+|. .+.+++|+|+++.+ ++++.|+.|++||..... .. ..+..+.. +..++|+|++..++++++.|+.++
T Consensus 25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VI-GTLPSGPD-PELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EE-EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence 3444443 46789999999876 667789999999987532 11 12333333 467889998654556667799999
Q ss_pred EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CC
Q 021319 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN 170 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 170 (314)
+||+.+++.............++++|+++.++++..++ .+.+||.++.+.............+.|++++..+++++ .+
T Consensus 99 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 99 VIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 99999877666555444556789999999999888765 46778988776655544445567789999999886654 58
Q ss_pred ceEEEEeCCCCCceeeeeecc-------cceEEEEECCCCCEEEE-eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 171 GTVEVLTYPSLRPLDTVVAHT-------AGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
+.+.+|+....+.+..+..+. .....++++|+++++++ .+.++.+.+||+.+++.+..+. +...+.+++|+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 999999998776554443221 12356889999998544 4556789999998887765543 34578899999
Q ss_pred cCCcEEEEe-cCCceEEEEECCCCCeEEEEeccCccceeEEcC
Q 021319 243 HTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 284 (314)
Q Consensus 243 p~~~~l~s~-s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~ 284 (314)
|+|++|+++ +.++.|.+||..+++.+..++.....+.++++|
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999887 468999999999999999888777889999886
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=204.37 Aligned_cols=242 Identities=24% Similarity=0.384 Sum_probs=207.0
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
+.||.+.|.++++..-+..|++|+.|+++|+||+.++. ....+.||...|.++...+ .++++|+.|.+|++|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWD 317 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEe
Confidence 78999999999998778899999999999999987643 3345779999999998754 4788999999999999
Q ss_pred CCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceE
Q 021319 96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV 173 (314)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~ 173 (314)
+.++.+..... ....+.++... +..+++|+.|++|.+||+.+.+.+.... +...+.++.+... +.++.++.|+.+
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred ccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence 99999988877 45555566665 8899999999999999999998887754 4566777765444 889999999999
Q ss_pred EEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEccCCcEEEEe
Q 021319 174 EVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 174 ~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~ 251 (314)
++|++... +++.++.+|..-+..+.+ .++.|++++.|++|++||..++.++++++. +...|..+++. ...++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s 470 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCS 470 (537)
T ss_pred EeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEE
Confidence 99999998 889999999887766555 578999999999999999999999999988 55778888765 6889999
Q ss_pred cCCceEEEEECCCCCeEEEE
Q 021319 252 SEDLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 252 s~d~~v~v~~~~~~~~~~~~ 271 (314)
+.|+.+.+||+.+++..+.+
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCCeeEEEecccCchhhhh
Confidence 99999999999999888765
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=190.39 Aligned_cols=257 Identities=18% Similarity=0.305 Sum_probs=206.8
Q ss_pred Cccceeeeeccc----eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC
Q 021319 2 GESSIPFKNLHS----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77 (314)
Q Consensus 2 ~~~~~~~~~~~~----~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 77 (314)
+|+.+..+++.. +.+..|.+.|+.+++.. ..++|+|.|++|+.|.++.. ....+. ....+..+.-+-.
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-----p~~til-g~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-----PLHTIL-GKSVYLGIDHHRK 158 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-----cceeee-ccccccccccccc
Confidence 355566777644 66789999999999876 78999999999999988642 111222 2344556655433
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc-eEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI 155 (314)
Q Consensus 78 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 155 (314)
.+.++|+|. .|.|||......+..+..... +.++.|+|-- ..|++++.|++|.+||++..+|++........+.+
T Consensus 159 -~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I 235 (433)
T KOG0268|consen 159 -NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI 235 (433)
T ss_pred -cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence 467888874 589999977777777666544 5678899854 56677889999999999999999998888899999
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-eecc
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLE 233 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~ 233 (314)
.|+|.+-.|+++.+|-.++.+|.... +|+....+|..++..++|||.|+-+++|+-|.+|+||..+.++....+ ..-.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM 315 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM 315 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh
Confidence 99998889999999999999998654 578888899999999999999999999999999999999887665443 2234
Q ss_pred cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319 234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269 (314)
Q Consensus 234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~ 269 (314)
..|.++.||.|.+|++|||.|+.|++|.....+.+.
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 579999999999999999999999999876655443
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.9e-26 Score=197.79 Aligned_cols=297 Identities=20% Similarity=0.348 Sum_probs=218.2
Q ss_pred eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee---cCCCCEEEEEEcCCCCCEEEE
Q 021319 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIAT 84 (314)
Q Consensus 8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s 84 (314)
|+-.....+.||.+.|+++.|+|++..|+|++.|+++.+|..+....-++...++. |....-....|+|++ +.+++
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~ 333 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIA 333 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEE
Confidence 33333445679999999999999999999999999999998765433233333332 334456788899875 78889
Q ss_pred EeCCCcEEEEeC-CCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCC----eEee-eeccCcceeeE
Q 021319 85 ASGDKTVRLWDA-RSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIH-RRKFGYEVNEI 155 (314)
Q Consensus 85 ~~~D~~v~iwd~-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~-~~~~~~~~~~~ 155 (314)
-+.-|..++|-. +...+....... .....+.|.|.|.+|++.+.|.+-+++-.-.. ..+. ...+++...++
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 999999999973 223333333222 33456999999999999999999999865411 1121 23456777777
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCC--------------------------------CC---------------------
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPS--------------------------------LR--------------------- 182 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~--------------------------------~~--------------------- 182 (314)
++-+....|+.+.+..-+++|..+. .+
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 7766555555555544445543220 00
Q ss_pred -----------------------ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEEeeeccc
Q 021319 183 -----------------------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEW 234 (314)
Q Consensus 183 -----------------------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~ 234 (314)
.+..+.+|..+|++++.+|+++++|++++.. .|++|+....+.++.+..|..
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL 573 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL 573 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce
Confidence 0223456899999999999999999998765 599999999988889999999
Q ss_pred CeEEEEEccCCcEEEEecCCceEEEEECCCCCeE-EEE---e-ccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-HQI---P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~-~~~---~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
.|..++|||||+||+++|.|..+.+|........ ..+ + |.-=|-+..|+|+.++|||+|+|| ++++|
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK--------~VkVW 645 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK--------KVKVW 645 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc--------eEEEE
Confidence 9999999999999999999999999998654322 111 2 222377999999999999999998 68899
Q ss_pred cccC
Q 021319 310 GFEN 313 (314)
Q Consensus 310 ~~~~ 313 (314)
..++
T Consensus 646 ~~~~ 649 (764)
T KOG1063|consen 646 EEPD 649 (764)
T ss_pred eccC
Confidence 8865
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=202.01 Aligned_cols=289 Identities=16% Similarity=0.189 Sum_probs=234.6
Q ss_pred eeeeecccee-----eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCC
Q 021319 6 IPFKNLHSRE-----YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80 (314)
Q Consensus 6 ~~~~~~~~~~-----~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 80 (314)
+-|+++..+. ...|.+.|....|-|....++|++.|+++++|-.++.......-..-.||+.+..++.|....+.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 3345544433 45788999999999999999999999999999777544332222233689999999999866678
Q ss_pred EEEEEeCCCcEEEEeCCCC-------c--------ee-------------------------------------------
Q 021319 81 LIATASGDKTVRLWDARSG-------K--------CS------------------------------------------- 102 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~-------~--------~~------------------------------------------- 102 (314)
.+.+++.|++.+.+++... + ..
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 8899999998888865210 0 00
Q ss_pred --------eeEE------ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee----ccCcceeeEEeccCCCeE
Q 021319 103 --------QQAE------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 103 --------~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 164 (314)
..+. ......+++.++-|++.+.|+..|.|.+|++.++-...++ .++.++..++....+..+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 0000 0012234666777899999999999999999887666555 567789999988888999
Q ss_pred EEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 165 FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
++++.+|-+.+|++.....+..+. -...+.++..+.....+|++..|=.|+++|+.+.+.++.|.+|...+++++||||
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999998777555553 2445788888888889999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 245 GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
|++|++++.|+.|++||+.++..+..+....++.++.|||+|.+|||+..|
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 999999999999999999999999998888999999999999999999998
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=197.60 Aligned_cols=269 Identities=18% Similarity=0.253 Sum_probs=212.8
Q ss_pred ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCC-CCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
.+|+..-+.|+|.|+|++|.+|+.||.||+|+.... ..+.. +..+...|.+++-. .+.|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----i~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----IDISGELVSSIACY---SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----hhccCceeEEEeec---ccceEEeeccceEEEee
Confidence 479999999999999999999999999999987553 21221 11266777777643 35889999999999999
Q ss_pred CCCCceeee-EEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceE
Q 021319 96 ARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTV 173 (314)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 173 (314)
..++..... ..+.-+...++++.+|++++.|+.|-.|++.++........ ..+..++.++.++|.++++++...+|.+
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 888765422 23445566788999999999999999999999877654443 5678899999999999999999999999
Q ss_pred EEEeCCCCCceeeeee-------c-ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--cccCeEEEEEcc
Q 021319 174 EVLTYPSLRPLDTVVA-------H-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSH 243 (314)
Q Consensus 174 ~~~~~~~~~~~~~~~~-------~-~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp 243 (314)
.+|++.......++.+ . ...+..++|+|++..++..+.|+.|++|+...+.....+.. +...+..+.|+|
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 9999987655444332 1 23457789999988888899999999999998877666543 334589999999
Q ss_pred CCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 244 TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 244 ~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
.|+|||+++.||.|.|||+.+-.. +. ....|.+++|.|+.+-+-....-
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~-~~--~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHER-HE--FKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchh-cc--ccceeEEEecCCCCCeeEEEeec
Confidence 999999999999999999988322 22 24579999999998887544433
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.3e-26 Score=194.04 Aligned_cols=239 Identities=21% Similarity=0.334 Sum_probs=198.6
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
+...|++|.|+++|.+|+.|-.+|.|.|||....... ..+.+ |...|.+++|+ ...+.+|+.|+.|..+|++
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~----~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT----RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc----ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence 3789999999999999999999999999998764321 23455 99999999997 3578999999999999998
Q ss_pred CCceeee-EE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeE-EEE--cCCc
Q 021319 98 SGKCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF-FLT--TGNG 171 (314)
Q Consensus 98 ~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~--~~~g 171 (314)
..+.... .. +..++..+.|++|++++|+|+.|+.+.|||.....++..+ ++...+..++|+|-..-+ ++| ..|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 8765443 33 3344556999999999999999999999999777776654 677889999999976544 444 3589
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE--eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 249 (314)
.+++|+......+..+. -...|..+.|++..+.|++ |..+..|.||+..+.+.+..+.+|...|..+++||||..++
T Consensus 369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 99999998777766553 3567999999998876654 45567899999999999999999999999999999999999
Q ss_pred EecCCceEEEEECCCC
Q 021319 250 SASEDLFIDISNVHTG 265 (314)
Q Consensus 250 s~s~d~~v~v~~~~~~ 265 (314)
+|+.|.++++|++-..
T Consensus 448 t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDE 463 (484)
T ss_pred EecccCcEEeccccCC
Confidence 9999999999998653
No 104
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.3e-27 Score=180.18 Aligned_cols=212 Identities=25% Similarity=0.356 Sum_probs=170.7
Q ss_pred eeeeccceeeecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEE
Q 021319 7 PFKNLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (314)
Q Consensus 7 ~~~~~~~~~~~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 85 (314)
+++-.-++.+..|+.+|.++.|++- ...++++|.|++||+|+...+. ....+.||..-|....|+|..+++++++
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 3344455667899999999999986 4568888999999999986532 2345889999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeeEEec-CceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319 86 SGDKTVRLWDARSGKCSQQAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 86 ~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
|.|+++++||++.......++.+ .++.++.|+. +.+.|++|+.|+.|+.||+++.+
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---------------------- 224 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---------------------- 224 (311)
T ss_pred cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----------------------
Confidence 99999999998865433334433 4777888875 56778899999999999988642
Q ss_pred EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEE
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISF 241 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~ 241 (314)
.|+..+.+|+..|..++|||-. ..||+++-|-++|+||.... .++.++..|..-+..+.|
T Consensus 225 ------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 225 ------------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred ------------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 2345567899999999999964 57999999999999998744 445566667777888999
Q ss_pred cc-CCcEEEEecCCceEEEEEC
Q 021319 242 SH-TGDYIASASEDLFIDISNV 262 (314)
Q Consensus 242 sp-~~~~l~s~s~d~~v~v~~~ 262 (314)
|+ +..++|+.+.|..++||+.
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 96 4689999999999999984
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=181.39 Aligned_cols=244 Identities=20% Similarity=0.320 Sum_probs=205.6
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
...|.||...|+++.|+|+...+++++.|..||||.+.... .......|..+|+.+..+|.+ ++|++++.|++.-
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~ 328 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWA 328 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccCC-cEEEEecCCceEE
Confidence 35678999999999999999999999999999999876533 223456899999999999984 7999999999999
Q ss_pred EEeCCCCceeeeEEecC---ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEc
Q 021319 93 LWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (314)
+.|++++.+......+. ...+..|+|||..+.+|..|+.+++||+++...+.++ -+..++..++|+.+|=++++++
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 99999998776655432 2457889999999999999999999999987755443 2457899999999999999999
Q ss_pred CCceEEEEeCCCCCceeeeee-cccceEEEEECCCCCEEEEeeCCCeEEEeeC--CCcEEEEEeeecccCeEEEEEccCC
Q 021319 169 GNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTG 245 (314)
Q Consensus 169 ~~g~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~sp~~ 245 (314)
+|+.+++||++..+...++.. ...++.++.|++.|++|+.++.|=+|.+++- ++..++..+..|......+.|....
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 999999999998887777653 3347999999999999999988866666653 2567777887788788999999999
Q ss_pred cEEEEecCCceEEEEE
Q 021319 246 DYIASASEDLFIDISN 261 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~~ 261 (314)
++++++|.|..++++.
T Consensus 489 q~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYA 504 (506)
T ss_pred eEEeeccchhheEEee
Confidence 9999999998877764
No 106
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=175.15 Aligned_cols=273 Identities=20% Similarity=0.325 Sum_probs=203.8
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc----------eeeEEeecCCCCEEEEEEc-------CCCCCEEE
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK----------VKDIELRGHADSVDQLCWD-------PKHADLIA 83 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~-------~~~~~~l~ 83 (314)
+....+.|||||..|++-+.|..+++|++....... ...++.. -...|...+|- |. .++++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~-t~l~a 127 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPS-TNLFA 127 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCc-cceee
Confidence 345678899999999999999999999985322111 1111111 23456777774 33 56899
Q ss_pred EEeCCCcEEEEeCCCCceeeeEEe---c---CceEEEEEccCCCEEEEEeCCCcEEEEEccCC-e--Eeee-ecc-----
Q 021319 84 TASGDKTVRLWDARSGKCSQQAEL---S---GENINITYKPDGTHIAVGNRDDELTILDVRKF-K--PIHR-RKF----- 148 (314)
Q Consensus 84 s~~~D~~v~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~--~~~~-~~~----- 148 (314)
+.+.|.-|++||.-+|+....... - ....+++|+|||.+|++|. ...|+++|+..+ + ++.. ...
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999998876544321 1 1245799999999998885 578999998433 2 1111 111
Q ss_pred CcceeeEEeccCCC-eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcE-E
Q 021319 149 GYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEML-C 225 (314)
Q Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~-~ 225 (314)
..-+.+++++|... .+++++...++-+|.....+|+..+.+|.++|+.+.|.++|..|.+|++ |..|..||++... .
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 23467889999876 7888888899999999999999999999999999999999999999987 5689999998643 3
Q ss_pred EEEeeeccc-CeEEE--EEccCCcEEEEecCCceEEEEECCC-CCeEEEEe-ccCccceeEEcCCCCeeEEEecCC
Q 021319 226 VRTFTKLEW-PVRTI--SFSHTGDYIASASEDLFIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 226 ~~~~~~~~~-~v~~~--~~sp~~~~l~s~s~d~~v~v~~~~~-~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+-.+..|.. .-..| ...|++++||+|+.||.|++||..+ |..+..+. ++..++.|++||-.+++|+++..+
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 334444433 22234 4459999999999999999999987 66455443 567899999999999999998654
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-25 Score=188.61 Aligned_cols=280 Identities=19% Similarity=0.241 Sum_probs=220.2
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEE-EEEcCCCCCEEEEEeCCCcE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~D~~v 91 (314)
.+++.||...|..|++.+ +..++++|.||++++|+-... .......+.+|.+-|.. +++.+.++..+++|+.|.++
T Consensus 7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~--~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGK--QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCc--ccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 467899999999998764 558999999999999976432 23333456677777776 78876555578999999999
Q ss_pred EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
.+|...+......+..+.. +.+++...++. +++|+.|.+.++|-....... ..-|...+..++.-|.+ .+++++.|
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCc
Confidence 9999987776666544443 34455556666 899999999999976543211 12344567888777776 88999999
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
..+++|.- .+.++++.+|..-|..+++-+++ .|++++.||.|+.|++ ++.++.++.+|..-+.+++..+++..++|
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 99999986 55677888999999999998754 5788999999999999 78888899999999999999999999999
Q ss_pred ecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 251 ASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
+++|+.+++|+.. ...+.+.+- ..|.++.+-++|.. ++|+.| |.+|||-.++
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SD--------G~VrVfT~~k 289 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSD--------GRVRVFTVDK 289 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccC--------ceEEEEEecc
Confidence 9999999999976 455555543 47888988887866 578878 6899997754
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.9e-24 Score=160.12 Aligned_cols=242 Identities=22% Similarity=0.374 Sum_probs=176.8
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCC----------CCC-ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH----------GHG-KVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~----------~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
-..+|++|+|+|.|.+.+.|++.+++||--...- .+. .+...+-+.|.+.|+|.+|+|. +++|++|+.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCC
Confidence 4568999999999999999999999999654210 111 1223344578999999999997 479999999
Q ss_pred CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe---ccCCCeE
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW---NMTGEMF 164 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 164 (314)
|++|++--.+...+... +..+ . ....||+|+ .++| ...+..+
T Consensus 110 dk~ik~l~fn~dt~~~~----g~dl--e---------~nmhdgtir--------------------dl~fld~~~s~~~i 154 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNAT----GHDL--E---------FNMHDGTIR--------------------DLAFLDDPESGGAI 154 (350)
T ss_pred CceEEEEeccccccccc----Ccce--e---------eeecCCcee--------------------eeEEecCCCcCceE
Confidence 99999876654443221 1111 1 111222221 1111 1112233
Q ss_pred EEEcC--CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-------ccC
Q 021319 165 FLTTG--NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------EWP 235 (314)
Q Consensus 165 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~ 235 (314)
+.+.+ +-.+++-+....+++..+.+|.+.|.++- +-+|-++++|+.|.+|++||++-..|+.++... ...
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 33333 33455556667778888889999887763 446889999999999999999998888876431 246
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeEEEecCCc
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
|.+++..|.|++|++|-.|..+.++|.+.+++++.+ +|...|++|.|+|...++.+++-|-+
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce
Confidence 899999999999999999999999999999999886 46778999999999999999998854
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=181.85 Aligned_cols=273 Identities=13% Similarity=0.141 Sum_probs=209.1
Q ss_pred cccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 20 KKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
.+.|.+++|||...+ ++..+. -.|.||+..+.. ....+..-.+.|.+++|-.+ +.+++.|...|.|+++|..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~----~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRS----VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhh----hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecccc
Confidence 468999999998754 444432 578899865422 11123344677899999866 57999999999999999766
Q ss_pred CceeeeEEecCce-EEEEEccCCCE-EEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCC-eEEEEcCCceEE
Q 021319 99 GKCSQQAELSGEN-INITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGE-MFFLTTGNGTVE 174 (314)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 174 (314)
....+.+..+... -...|+|+++. +++|+.|+.+++||+.+...+..+ .+.--+++.+|+|... .+++|+.||.++
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 4444444433333 45678886655 556777788999999887642222 2233478889988755 778889999999
Q ss_pred EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE 253 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~ 253 (314)
+|+.+..........|+.+|..+.+-|.|..+|+++.+ .|++||+.++ +.+..+..|.-.|+|+++..++..|+|||-
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 99998774333334689999999999999999998755 5999999855 444455558889999999999999999999
Q ss_pred CceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319 254 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 254 d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
|+.|+++|+.+.+.++.+...++|.+++.+|++..++.|-.++-..
T Consensus 259 D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceee
Confidence 9999999998889999999999999999999999999898886544
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.5e-25 Score=183.71 Aligned_cols=210 Identities=26% Similarity=0.455 Sum_probs=168.9
Q ss_pred eeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
.|.||.+.=+.|+|++... .|++|+.|++|.+||+...... ..+...+.+|.+.|..++|++...+++++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 6789999899999999865 6999999999999999764431 23345688999999999999999999999999999
Q ss_pred EEEEeCCC--CceeeeEE-ecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319 91 VRLWDARS--GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 91 v~iwd~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
+.|||.|+ .+...... ......+++|+|- +..||+|+.|+++.+||+|+.+.
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------------ 307 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------------ 307 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------------------
Confidence 99999995 33333333 2455668889984 56678888899999999987431
Q ss_pred EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE--------------EEEEeee
Q 021319 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML--------------CVRTFTK 231 (314)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~--------------~~~~~~~ 231 (314)
++.++.+|...|.++.|+|.. +.||+++.|+.+.+||+.+-. .+..-.+
T Consensus 308 ----------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 308 ----------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred ----------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 355677899999999999964 689999999999999996421 1233347
Q ss_pred cccCeEEEEEccCCc-EEEEecCCceEEEEECCC
Q 021319 232 LEWPVRTISFSHTGD-YIASASEDLFIDISNVHT 264 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~-~l~s~s~d~~v~v~~~~~ 264 (314)
|...|..++|+|... .++|+++|+.+.||.+..
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 888999999999876 577889999999998764
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=193.87 Aligned_cols=277 Identities=17% Similarity=0.297 Sum_probs=204.8
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
....|...++-..|+.+|. ..++|+.+++........+..++. ...+.++.|+....++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4556666788888888874 688899886543222222222111 123567889877788999999999999999976
Q ss_pred C---ceeeeE-EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC-CCeEEEEcCCc
Q 021319 99 G---KCSQQA-ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT-GEMFFLTTGNG 171 (314)
Q Consensus 99 ~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~g 171 (314)
. +....+ +++...-++.|++- ..+|++|++|+.|++||+|..+...... ....+++|+|+|. +..|+++.++|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 2 111112 23344556888764 5678899999999999999877655543 3456899999987 46777888999
Q ss_pred eEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEEEccCCcE-
Q 021319 172 TVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDY- 247 (314)
Q Consensus 172 ~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~- 247 (314)
.+..||++. .++...+..|.+.+.|+.|+|++.+||||++|+.|+|||+.+.+. +.++ ....+|.+++|-|..++
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYH 278 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccch
Confidence 999999964 457778889999999999999999999999999999999975432 2232 23468999999998765
Q ss_pred EEEecC--CceEEEEECCCCC-eEEEEe-ccCccceeEEcC-CCCeeEEEecCCcccc
Q 021319 248 IASASE--DLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNP-KYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 248 l~s~s~--d~~v~v~~~~~~~-~~~~~~-~~~~i~~v~~~~-~~~~la~~~~d~~~~~ 300 (314)
||+.+. |..|+|||+...- +...+. |...++.++|-- +-..|.++|.|+..+|
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 666654 7899999997643 334443 567888999975 4567889999988876
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=195.83 Aligned_cols=203 Identities=19% Similarity=0.339 Sum_probs=171.2
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.+.|.||.+.|.+|.||. .++|+|+|.|++||+|++... .++....|++-|+|++|+|.+.++++||+-|+.||
T Consensus 362 ~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred hhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeecccccceE
Confidence 366889999999999996 569999999999999998753 34566789999999999999999999999999999
Q ss_pred EEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec---------cCcceeeEEeccCCC-
Q 021319 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---------FGYEVNEIAWNMTGE- 162 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~- 162 (314)
||++...+++.-..++.-+.+++|.|||+..++|+.+|.+.+|+.+..+.+.... ....+..+.+.|...
T Consensus 436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~ 515 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD 515 (712)
T ss_pred EeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence 9999988888877777778899999999999999999999999998776543321 123688888887654
Q ss_pred eEEEEcCCceEEEEeCCCCCceeeeeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~ 221 (314)
.+++.+.|..|++|+..+...+..+.++.. .-....|+.||+++++++.|..|.+|++.
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 588999999999999977766666665332 33566899999999999999999999974
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=175.23 Aligned_cols=243 Identities=19% Similarity=0.324 Sum_probs=192.1
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC------------c------eeeeE-EecCceEEEEEccCCC
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG------------K------CSQQA-ELSGENINITYKPDGT 121 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~------------~------~~~~~-~~~~~~~~~~~~~~~~ 121 (314)
.+..|+.++.+.+|+|++ .++++||.|.+|+|.|+..- . +++++ ....++..+.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 467899999999999985 79999999999999998511 0 11111 1223445688999999
Q ss_pred EEEEEeCCCcEEEEEccCCeEe---eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee---eeecccceE
Q 021319 122 HIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT---VVAHTAGCY 195 (314)
Q Consensus 122 ~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~i~ 195 (314)
.|++++.|++++++|..+.... +.++...++.++.|+|.|++++++.+...+++|+..+.++... -.+|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 9999999999999998765332 2233456789999999999999999999999999887664432 247899999
Q ss_pred EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-c-ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L-EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~ 273 (314)
++..++++++.++|+.||.|++||--.++|+.++.. | ...|.+..|+.+++|++|.++|..+++|++.+++.+..+..
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 999999999999999999999999999999988864 3 34688999999999999999999999999999999988764
Q ss_pred cC------ccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 274 RA------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 274 ~~------~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
.+ .-+...||....++..-.+- .+.++-|+-
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEa-------s~slcsWda 382 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEA-------SNSLCSWDA 382 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccc-------cCceeeccc
Confidence 32 13456677666665544432 245666653
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.2e-25 Score=173.44 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=220.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.|.||++.|..|+-......+.+++.|.+.+||.+++.. .-..+.||.+.|+++.|++. +.++++++.|++.
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~----CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA----CLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc----ceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence 457789999999999988777899999999999999998743 33468899999999999987 4799999999999
Q ss_pred EEEe------CCCCc------------ee--------------------eeEEec---CceEEEEEccCCCEEEEEeCCC
Q 021319 92 RLWD------ARSGK------------CS--------------------QQAELS---GENINITYKPDGTHIAVGNRDD 130 (314)
Q Consensus 92 ~iwd------~~~~~------------~~--------------------~~~~~~---~~~~~~~~~~~~~~l~~~~~d~ 130 (314)
.||- +.... +. ....+. ...+++.|...|+.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 9995 11100 00 000111 1223455777899999999999
Q ss_pred cEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEE
Q 021319 131 ELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (314)
Q Consensus 131 ~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t 208 (314)
+-.+||+++..+++.. -+..+...+.-+|...++++++.|-+.++|+++.. ..+..+++|...+++..|+.+. .+++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceee
Confidence 9999999999888764 35667788888999999999999999999999643 4567788999999999998754 5788
Q ss_pred eeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe------ccCccceeE
Q 021319 209 GSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP------CRAAMNSVE 281 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~------~~~~i~~v~ 281 (314)
|+.|.+|++||++++... .++ ..+.+++.++.+-.++.+|.--.+..|+++|+...++.+ ++ |+--|.|++
T Consensus 374 gSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-lPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-LPRTSRQGHRRMVTCCA 451 (481)
T ss_pred cCCCceEEEeeeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-CCcccccccceeeeeee
Confidence 999999999999987643 333 456789999999999999999889999999997655432 22 334588999
Q ss_pred EcCCC--CeeEEEecCCccc
Q 021319 282 WNPKY--NLLAYAGDDKNKY 299 (314)
Q Consensus 282 ~~~~~--~~la~~~~d~~~~ 299 (314)
|.-+. +-|.++|=|+..+
T Consensus 452 W~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred ccccCcccccccccccceee
Confidence 98543 4467899887654
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=185.30 Aligned_cols=242 Identities=17% Similarity=0.244 Sum_probs=190.2
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce--------eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV--------KDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
...|++++|++.|..|+..+.....+|+|-+-....+. --...+||...+++-+|+|...+.+++++.|+++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 45799999999999999999889999998542111000 0113579999999999999999999999999999
Q ss_pred EEEeCCCCceeeeE-Ee------cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eeee----ccCcceeeEEec
Q 021319 92 RLWDARSGKCSQQA-EL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRR----KFGYEVNEIAWN 158 (314)
Q Consensus 92 ~iwd~~~~~~~~~~-~~------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~----~~~~~~~~~~~~ 158 (314)
||||+.+-+...+. .. .-....|+|+|+++.+|.|..||+|.+|+.+.... ...+ ..+..+.++.|+
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99999765432221 11 12345699999999999999999999999755322 1111 123579999999
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCC-ceeeeeec--ccceEEEEECCCCCEEEEeeC------CCeEEEeeCCCcEEEEEe
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAH--TAGCYCIAIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTF 229 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~------dg~i~vwd~~~~~~~~~~ 229 (314)
++|+++++-+.|+.+++|+++..+ ++....+. ...-+.++|||+.+++++|.+ .|.+.+||..+...+.++
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 999999999999999999998754 55554432 234678899999999999854 467999999888888887
Q ss_pred eecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319 230 TKLEWPVRTISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
.-....|..+.|+|.=+.|..|+.||.++|+-
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 76677899999999988899999999999874
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4e-25 Score=183.56 Aligned_cols=287 Identities=16% Similarity=0.222 Sum_probs=229.6
Q ss_pred ceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCcee--eEEeecCCCCEEEEEEcCCCCCEE
Q 021319 5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK--DIELRGHADSVDQLCWDPKHADLI 82 (314)
Q Consensus 5 ~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l 82 (314)
+||...-.+.+| .|..-|-.+..|...+++.|||. |.|+|||+...+ .+.+ .+......+.|..+...|++ ..|
T Consensus 405 gIPrharq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg-~k~PvsqLdcl~rdnyiRSckL~pdg-rtL 480 (705)
T KOG0639|consen 405 GIPRHARQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG-NKSPVSQLDCLNRDNYIRSCKLLPDG-RTL 480 (705)
T ss_pred CCCchHHhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC-CCCccccccccCcccceeeeEecCCC-ceE
Confidence 355544445555 58899999999999999999995 899999996432 2222 22223345678888889886 566
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEEecCc---eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEec
Q 021319 83 ATASGDKTVRLWDARSGKCSQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWN 158 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~ 158 (314)
++|+.-.++.|||+.........++... -.+++.+||.+..+++..||.|.|||+++...+...+. .--..++..+
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 7899999999999976544333333332 23478899999999999999999999999877776553 3457889999
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
++|..+.+++-|++++.||++..+.+... .....|.++...|++.++|+|=.++.+.+-....... ..+..|+..|.+
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVLS 638 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLS 638 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEEE
Confidence 99999999999999999999877655432 2356799999999999999999999999988765543 345568899999
Q ss_pred EEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
+.|++.|++++|.+.|..+..|.+..|..+.+.+-..+|.+...+.+.++++||+.||.
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcc
Confidence 99999999999999999999999999999888887889999999999999999999963
No 117
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=177.55 Aligned_cols=234 Identities=17% Similarity=0.292 Sum_probs=201.4
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE---------EecCceEEEEEccCCCEEEEEeCCCcEEE
Q 021319 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---------ELSGENINITYKPDGTHIAVGNRDDELTI 134 (314)
Q Consensus 64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 134 (314)
|.+..+.|..|+|++ +++++|+.||.|.+||..+|+..+.. .......++.|++|...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 566778899999985 79999999999999999988754322 23556788999999999999999999999
Q ss_pred EEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319 135 LDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (314)
Q Consensus 135 ~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d 212 (314)
|.+++++.+.+.. +...+.++.|+.++..++.++-|.++++--+.+++.++.+.+|..-++...|.++|..+++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999998877654 55679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCCcEEEEEeee--cccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEecc----CccceeEEcCC
Q 021319 213 SLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPK 285 (314)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~--~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~ 285 (314)
|+|++|+.++..|+.+|+. .+.+|+++-.-|.+ ..++.+.....+.|-++ .|..++.+..+ +.--+...+|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999998864 46688888887764 57777888888888876 56777777542 33456789999
Q ss_pred CCeeEEEecCCccc
Q 021319 286 YNLLAYAGDDKNKY 299 (314)
Q Consensus 286 ~~~la~~~~d~~~~ 299 (314)
|..+...|+|+.+|
T Consensus 449 GewiYcigED~vlY 462 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLY 462 (508)
T ss_pred CcEEEEEccCcEEE
Confidence 99999999998776
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-23 Score=164.33 Aligned_cols=264 Identities=15% Similarity=0.294 Sum_probs=201.7
Q ss_pred EEEEeeCCCcEEEeecCCCCC--C--c----eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319 34 KLASGSVDQTARVWHIEPHGH--G--K----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (314)
Q Consensus 34 ~l~s~~~D~~v~iw~~~~~~~--~--~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~ 105 (314)
.|+.|++...|.=+++..... . . .+-..+..|.+++.+++.+ +.+++|||.|-+|+|||.+.......+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence 367777776665555543220 0 0 1123467899999999985 369999999999999999877655444
Q ss_pred -EecCceEEEEEccCCC--EEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC
Q 021319 106 -ELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181 (314)
Q Consensus 106 -~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (314)
...+.+.++.|.+.-. .|++|+.||.|.+|+......+...+ +..+++.++.+|.++..++.++|+.++.|++-.+
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 3345566788887765 89999999999999999998887765 4567999999999999999999999999998766
Q ss_pred CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 182 ~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
+.-.... -....+.+.|+|.|.+++....++ |-+|.+...+....+... ..+.++-| -++.+|++|..|..|.+||
T Consensus 160 r~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~-~r~l~~~~-l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 160 RVAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP-KRILCATF-LDGSELLVGGDNEWISLKD 235 (362)
T ss_pred ccceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc-ccceeeee-cCCceEEEecCCceEEEec
Confidence 5433332 122345589999999999998776 999998876555444333 23555555 4578899999999999999
Q ss_pred CCCCCeEEEEe-ccCccceeEE--cCCCCeeEEEecCCcccccccceEEecccc
Q 021319 262 VHTGRTVHQIP-CRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 262 ~~~~~~~~~~~-~~~~i~~v~~--~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
.....++..+. |..+|-++.+ +|.+.+|+|+|.| |.||||+++
T Consensus 236 ~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD--------G~I~vWd~~ 281 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD--------GFIKVWDID 281 (362)
T ss_pred cCCCccceeeecchhheeeeEEEecCCceEEEEeccC--------ceEEEEEcc
Confidence 99888887765 5678888874 4678999999999 789999985
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=176.44 Aligned_cols=244 Identities=22% Similarity=0.309 Sum_probs=203.8
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee----ee--------E-------EecCceEEEEEccCC
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS----QQ--------A-------ELSGENINITYKPDG 120 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----~~--------~-------~~~~~~~~~~~~~~~ 120 (314)
..+..|..++.+++.+|++ .+.++++.|++|.-|++.+++.. .. . ....++++++.++|+
T Consensus 136 ~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred eeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3466799999999999985 58889999999999998877632 11 0 122346789999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319 121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI 199 (314)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 199 (314)
++|++|+.|..+.|||.++.++++.. -+...+.+++|-...+.+++++.|+.+++|+......+.++.+|...|..|+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999888774 45567899999999999999999999999999998888899999999999998
Q ss_pred CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--c---c
Q 021319 200 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--C---R 274 (314)
Q Consensus 200 ~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~---~ 274 (314)
..-++.+-+|+.|.++++|++..-. ...|.++...+.|++|- +...++|||.||.|.+|++.+.+++.... | .
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 8888888899999999999995433 23466778789999984 45668899999999999999988886543 2 1
Q ss_pred C--------ccceeEEcCCCCeeEEEecCCcccccccceEEeccccCC
Q 021319 275 A--------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 314 (314)
Q Consensus 275 ~--------~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~~ 314 (314)
. .|++|+-.|...++|+|+-+ |.+|+|.++++
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~--------G~vrLW~i~~g 412 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWS--------GCVRLWKIEDG 412 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCC--------CceEEEEecCC
Confidence 1 58899999999999999955 78999988754
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.3e-25 Score=183.35 Aligned_cols=239 Identities=19% Similarity=0.281 Sum_probs=203.4
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
..+.|+++...|||..|++||.-.+|-|||+.... .....++..-.-+.++|+.+|+ .++++++..||.|.|||+++
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT--prikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEccc
Confidence 45679999999999999999999999999997632 2233455555566788999997 46889999999999999999
Q ss_pred CceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
...++++..+ ....++.+++||..|.+|+-|.+++.||++..+.+.......++.++.++|+++.++++.+++.+.+..
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence 9888887654 445678999999999999999999999999988877777778899999999999999999999999887
Q ss_pred CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 257 (314)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v 257 (314)
....+. ..+..|+.-|.++.|.+-|+++++.+.|..+..|.+.-+..+...+ ...+|.++.+|.|.+|++|||.|...
T Consensus 621 ~skp~k-yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 621 TSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred cCCccc-eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcce
Confidence 654432 3456788889999999999999999999999999998777665543 45689999999999999999999888
Q ss_pred EEEEC
Q 021319 258 DISNV 262 (314)
Q Consensus 258 ~v~~~ 262 (314)
.||.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88865
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1e-22 Score=169.32 Aligned_cols=268 Identities=16% Similarity=0.213 Sum_probs=197.6
Q ss_pred ccccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319 19 HKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~ 96 (314)
-+..|....|+|.+.. ++++| .+.+..|+.+.....+.+. .++++ +..|.+++|.+++ + +++|..+|.|.||+.
T Consensus 199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~-~fek~ekk~Vl~v~F~eng-d-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQG-IFEKREKKFVLCVTFLENG-D-VITGDSGGNILIWSK 274 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEee-ccccccceEEEEEEEcCCC-C-EEeecCCceEEEEeC
Confidence 4567888899998755 55555 6899999876543222221 12222 2569999999864 3 569999999999999
Q ss_pred CCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeEEeccCCCeEEEEcCCce
Q 021319 97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGNGT 172 (314)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 172 (314)
...+..++.. +.+.+.++++..+|.+|- |+.|..|..|| ...+.+...+.+ ..++.++-.. .-++++...+.
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~di~vGTtrN~ 350 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--GDILVGTTRNF 350 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--CcEEEeeccce
Confidence 8777665543 455677899999998776 99999999999 444444444443 3455554322 22667766666
Q ss_pred EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec
Q 021319 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 252 (314)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s 252 (314)
+-.=.+...- .....+|..+...++.+|+...++|++.|+.+++|+- .+.+-+ +....++.+++|+|.| .+|.|+
T Consensus 351 iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~~wt-~~~~d~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 351 ILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKLEWT-KIIEDPAECADFHPSG-VVAVGT 425 (626)
T ss_pred EEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEccC--CceeEE-EEecCceeEeeccCcc-eEEEee
Confidence 5444443322 2245689999999999999999999999999999992 222222 2345789999999999 999999
Q ss_pred CCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319 253 EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 253 ~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
..|...|.|..+...+..-.....++.|+|+|+|.+||.|+.|..+|
T Consensus 426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 99999999999966665544567899999999999999999998777
No 122
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=176.72 Aligned_cols=237 Identities=22% Similarity=0.392 Sum_probs=183.3
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEE------------------eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIE------------------LRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~------------------~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
|+++|.|..|..|.|||++.... ..+.+. ..+|+++|.+|+|+..-.++|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~-v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDA-VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccc-cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 67999999999999999864321 111111 23799999999999887889999999999999
Q ss_pred EeCCCCceeeeEEe-cCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEe-eeeccCcceeeEEeccCC-CeEEEEcC
Q 021319 94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTG-EMFFLTTG 169 (314)
Q Consensus 94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 169 (314)
||+.++++...... ...+.++.|+|. ...|++|+.|+++.+.|.|..... ...+...++..++|.+.. ..++++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999888874 455667999885 567789999999999999963322 335666789999998876 45677789
Q ss_pred CceEEEEeCCCC-CceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE--EEEEeeecccCeEEEEEccCC
Q 021319 170 NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFSHTG 245 (314)
Q Consensus 170 ~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~sp~~ 245 (314)
+|+++.++.+.. +++.++..|..+|.++++++.- .+++|++.|+.|++|++.... .++.-.---....|.++.|+-
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 999999999765 8999999999999999998754 578999999999999986432 221100001125556677765
Q ss_pred -cEEEEecCCceEEEEECCCCCeEE
Q 021319 246 -DYIASASEDLFIDISNVHTGRTVH 269 (314)
Q Consensus 246 -~~l~s~s~d~~v~v~~~~~~~~~~ 269 (314)
-++|.|+..+.++|||+.+...++
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ceEEEecCccceEEEeecccChhHH
Confidence 457778888899999998876554
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.6e-23 Score=174.83 Aligned_cols=286 Identities=17% Similarity=0.227 Sum_probs=224.8
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
|-+.--.++|.+++|+.+.+.||.+-.||.|.||++.. ++.....+.|+. ..|..++|.+. ..|.|.+.+|.|.
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSIT 93 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEE
Confidence 33344468999999999999999999999999999875 355555666665 57999999953 5788999999999
Q ss_pred EEeCCCCceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEc
Q 021319 93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 168 (314)
-||+.+++....... .+.+.+++.+|.+..+++|+.||.+..++....+....... ..++.++.|++++..++.|+
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999887665543 45667899999999999999999888888776665544333 35688999999999999999
Q ss_pred CCceEEEEeCCCCCceeee----ee----cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319 169 GNGTVEVLTYPSLRPLDTV----VA----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 169 ~~g~~~~~~~~~~~~~~~~----~~----~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 240 (314)
.||.+++|+......+... .+ ...-++++.+-.++ .+++|++-|+|++||...+..++.+..|+..|.+++
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 9999999998776654411 11 11225666665444 689999999999999999999999999999999999
Q ss_pred EccCCcEEEEecCCceEEEEECCCCCeEEEE-----eccCccceeEEcCCCCeeEEEecCCcccccccceEE
Q 021319 241 FSHTGDYIASASEDLFIDISNVHTGRTVHQI-----PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR 307 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-----~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~ 307 (314)
-++++.++++++.|+.+.-+...+++.-... .|.--|++++..++ .|.+||.|..++..-.++++
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 9999999999999999988877665431111 13345888888776 88899999888765555543
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.6e-23 Score=162.29 Aligned_cols=282 Identities=20% Similarity=0.309 Sum_probs=208.9
Q ss_pred ecccccEEEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCc----ee-------eEEeecCCCCEEEEEEcCCCCCEEEE
Q 021319 17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VK-------DIELRGHADSVDQLCWDPKHADLIAT 84 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~----~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s 84 (314)
+-|.+.|++++..+. |.++++|+.||.+.+||++.-..-+ +. ...-.+|.-+|..+.|-|.+...+.|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 469999999998874 8899999999999999996432100 00 01224788899999999998889999
Q ss_pred EeCCCcEEEEeCCCCceeeeEEecCceEEEEEcc---CCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccC
Q 021319 85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKP---DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT 160 (314)
Q Consensus 85 ~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (314)
+|-|.++++||.++-+....+++++.+.+-+++| ...++++|..+..+++-|+.....-+... +...+..+.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988877788888777767666 45688999999999999999887666543 4467899999999
Q ss_pred CCeE-EEEcCCceEEEEeCCCC-Cc--------------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319 161 GEMF-FLTTGNGTVEVLTYPSL-RP--------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (314)
Q Consensus 161 ~~~~-~~~~~~g~~~~~~~~~~-~~--------------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~ 224 (314)
.+.+ ++++.||.+++||.+.. -+ ++.-..|.+.++.++|..+++++++++.|..+++|++.++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8865 45678999999997532 11 11233577789999999999999999999999999998764
Q ss_pred EE-EEeee--c----ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCC
Q 021319 225 CV-RTFTK--L----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 225 ~~-~~~~~--~----~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
.- +.+.. + ...+. +. +-+...++---.|+.+.+.++..|..++.+. +...|++.++-|+-..+.++..|.
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCC
Confidence 32 11100 0 01111 22 2233333333344667777777777776654 345688889999888888888888
Q ss_pred cccc
Q 021319 297 NKYQ 300 (314)
Q Consensus 297 ~~~~ 300 (314)
+.|-
T Consensus 358 ni~~ 361 (397)
T KOG4283|consen 358 NIYM 361 (397)
T ss_pred cccc
Confidence 8774
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.3e-23 Score=180.54 Aligned_cols=293 Identities=19% Similarity=0.314 Sum_probs=216.4
Q ss_pred cceeeecccccEEEEEECCCCC---EEEEeeCCCcEEEeecCCCCCCc-----------------e----ee------EE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGK-----------------V----KD------IE 61 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~---~l~s~~~D~~v~iw~~~~~~~~~-----------------~----~~------~~ 61 (314)
....+.||.+.|++++|+..+. +|+|+|.|..||||.+....... . .. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 4567899999999999997765 79999999999999985432000 0 00 11
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--ceeeeE---EecC---ceEEEEEccCCCEEEEEeCCCcEE
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQA---ELSG---ENINITYKPDGTHIAVGNRDDELT 133 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~---~~~~---~~~~~~~~~~~~~l~~~~~d~~i~ 133 (314)
+.||.+-|.++.|+|.+ ..|+|+|.|+++.+|-.... -.+... ...+ ......|+|+++.+++-+..|..+
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34999999999999985 46779999999999976543 332222 2221 234678999999999999999999
Q ss_pred EEEccCC---eEee-eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC----ceeeeeecccceEEEEECCCCCE
Q 021319 134 ILDVRKF---KPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPMGRY 205 (314)
Q Consensus 134 i~d~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~ 205 (314)
+|-.+.. .+.. ..-+...+.+++|+|.|+++++.+.|.+-+++-....+ .+...+.|++.++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983221 1111 11234578999999999999999999999988654222 12233468999999999987778
Q ss_pred EEEeeCCCeEEEeeCCC-------------------------------------------cE----EE------------
Q 021319 206 FAVGSADSLVSLWDISE-------------------------------------------ML----CV------------ 226 (314)
Q Consensus 206 l~t~~~dg~i~vwd~~~-------------------------------------------~~----~~------------ 226 (314)
+++|..+..+|+|+..+ +. +.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 89999999999996321 00 00
Q ss_pred -----------------EEeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCCCCeEEEEe-ccCccceeEEc
Q 021319 227 -----------------RTFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVHQIP-CRAAMNSVEWN 283 (314)
Q Consensus 227 -----------------~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~ 283 (314)
+++-+|...|.+++.+|+++++||+-.. ..|++|+..+....+.+. |.-+|+.++||
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 0112455678999999999999998653 568999999877777654 56689999999
Q ss_pred CCCCeeEEEecCCcccccccceEEeccccC
Q 021319 284 PKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 284 ~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
||+++|++.|+|+ ++.+|..++
T Consensus 582 pdg~~LLsvsRDR--------t~sl~~~~~ 603 (764)
T KOG1063|consen 582 PDGRYLLSVSRDR--------TVSLYEVQE 603 (764)
T ss_pred CCCcEEEEeecCc--------eEEeeeeec
Confidence 9999999999998 566776543
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.8e-22 Score=166.71 Aligned_cols=270 Identities=18% Similarity=0.242 Sum_probs=201.2
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
++.|.|++|.++|+ ++||.++|.|.||+... ..+.... ..|.+.|.+|+...++ .|+||+.|..|..|| .+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---~~~~k~~-~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGT---NRISKQV-HAHDGGVFSLCMLRDG--TLLSGGKDRKIILWD-DNY 317 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---ceEEeEe-eecCCceEEEEEecCc--cEeecCccceEEecc-ccc
Confidence 46899999999886 78999999999998743 2333333 4899999999997653 466899999999999 333
Q ss_pred ceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 100 KCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 100 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
+..+..++. +.+..++ +.+.-+++|...+.|..=.+.+.-.+...-++.+...++.+|..+++++++.++.+++|
T Consensus 318 ~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred cccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 333333332 2222232 33333777877777666666665555555556678889999999999999999999999
Q ss_pred eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~ 256 (314)
+ ..++..+. ....++.|++|+|.| .+|.|...|...+.|.++...+. +.....++++++|+|+|.+||.||.|+.
T Consensus 396 ~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 396 N--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred c--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCe
Confidence 9 33333322 245678999999999 99999999999999998854443 3334779999999999999999999999
Q ss_pred EEEEECCC-CCeEEEE-e-ccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319 257 IDISNVHT-GRTVHQI-P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 304 (314)
Q Consensus 257 v~v~~~~~-~~~~~~~-~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~ 304 (314)
|.+|-+.. |+++... . +..+|+.+.|++|+++|.+-+.|-.+.-|..+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999875 4444332 1 24689999999999999999888665544333
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=181.90 Aligned_cols=256 Identities=21% Similarity=0.290 Sum_probs=178.6
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
....|.++|.++.|.|-..+|++++.|.++|+||++....... ..+.||...|.++||+|.+..++++|+.||.|.||
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 3458999999999999666899999999999999976432111 13679999999999999999999999999999999
Q ss_pred eCCCCcee-------ee---EE-----------------e-cCce---EEEEEccCCCEEEEEeC-CCcEEEEEccCCeE
Q 021319 95 DARSGKCS-------QQ---AE-----------------L-SGEN---INITYKPDGTHIAVGNR-DDELTILDVRKFKP 142 (314)
Q Consensus 95 d~~~~~~~-------~~---~~-----------------~-~~~~---~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~ 142 (314)
|.+-.... .. .+ . ...+ +.+-+..|...|++++. |+.|++||+++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 98633210 00 00 0 0011 22445567777887666 88899999887644
Q ss_pred eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec---ccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH---TAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
..+.+.. ....+.-| ..++.++..+..|.+|.+.+.|+.|..|+
T Consensus 253 ~~r~ep~---------------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 253 AYRQEPR---------------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred ccccCCC---------------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 3221110 01111112 34578888998999988888899999999
Q ss_pred CCCcEE--EEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE--EeccCccceeEEcCCC-CeeEEE
Q 021319 220 ISEMLC--VRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKY-NLLAYA 292 (314)
Q Consensus 220 ~~~~~~--~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~--~~~~~~i~~v~~~~~~-~~la~~ 292 (314)
+..... +..+.++.. --..-..+|++.+|++|+.|....+|.+.+...--. ..|.-+|++|+|.|.. .-+|++
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence 976422 223332211 112234789999999999999999999987554322 2344579999999964 456778
Q ss_pred ecCCcccccccceEEeccccC
Q 021319 293 GDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 293 ~~d~~~~~~~~~~~~~~~~~~ 313 (314)
++| -.++||.+++
T Consensus 380 SdD--------~~~kiW~l~~ 392 (720)
T KOG0321|consen 380 SDD--------FRVKIWRLSN 392 (720)
T ss_pred ccC--------cceEEEeccC
Confidence 877 4899999854
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.7e-23 Score=169.95 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=208.8
Q ss_pred eeeecccccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
.++.-|..+|++++|+|..+ .+++|+.-|.|-+||+..++...-..+.+..|+.+|.++.|+|.+...+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 44556788999999999864 6888889999999999643333334456778999999999999998899999999999
Q ss_pred EEEeCCCCceeeeEEec--Cc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eee-eccCcceeeEEeccCCC-eEE
Q 021319 92 RLWDARSGKCSQQAELS--GE-NINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHR-RKFGYEVNEIAWNMTGE-MFF 165 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~ 165 (314)
|+=|+.+.......... .. ...+.|+.+...++.+..-|.+.+||++.... ... ..+...+..++++|... +++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 99999876533322221 11 12355677777777777777999999987654 222 23445788999999765 566
Q ss_pred EEcCCceEEEEeCCCCCce----eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC----CcEEEEEeeeccc---
Q 021319 166 LTTGNGTVEVLTYPSLRPL----DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS----EMLCVRTFTKLEW--- 234 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~----~~~~~~~~~~~~~--- 234 (314)
+++.|++.++||++..+.. -....|...|.+..|||++-.|+|.+.|..|+|||.. ....+.++ .|..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCccc
Confidence 7788999999999765433 3345789999999999988779999999999999984 21111122 1211
Q ss_pred ---CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe--ccCcccee-EEcCCCCeeEEEecC
Q 021319 235 ---PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSV-EWNPKYNLLAYAGDD 295 (314)
Q Consensus 235 ---~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~--~~~~i~~v-~~~~~~~~la~~~~d 295 (314)
......|.|+..+++.|-.-..|.|+|...++.+.++. ...+|.+| +|||.+..+|+||..
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 23446799999999999998889999998888777653 23467766 999988867766654
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.7e-24 Score=174.64 Aligned_cols=226 Identities=19% Similarity=0.298 Sum_probs=182.8
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
.++|.+++-+|+|.+|+.|.-.+.+.+|.+.++. ... .+.+|-.+|+++.|+.+ +.+|+|||.||.|.+|++..-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---LL~-v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---LLN-VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc---HHH-HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEee
Confidence 5789999999999999999999999999998743 222 45789999999999976 579999999999999986321
Q ss_pred -------ceeeeEEecCce---EE--EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 100 -------KCSQQAELSGEN---IN--ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 100 -------~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
.......+..+. .. +.+.+-...|++++.|.++++||+.....+.++..+..+.+++..|....+++|
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence 111112222222 22 333444578999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeCCCCC----------------ceeeeeeccc--ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319 168 TGNGTVEVLTYPSLR----------------PLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~----------------~~~~~~~~~~--~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 229 (314)
+.+|.+.+..+.... .+..+.+|.+ +|+|++++.||+.|++|+.||.|+|||+.+.+|++++
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 999999888754321 2334567887 8999999999999999999999999999999999888
Q ss_pred eecccCeEEEEEccCCcEEEE
Q 021319 230 TKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s 250 (314)
.....+|+.+.+.|-.+-...
T Consensus 316 ~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 316 QTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhhccccceeEeeccccceec
Confidence 767789999999776544443
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=8e-23 Score=179.02 Aligned_cols=281 Identities=20% Similarity=0.339 Sum_probs=213.3
Q ss_pred cc-cccEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 18 GH-KKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 18 gH-~~~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
.| .+.|+++.|..||+. +++|+..|.+-+||++.. +........|.+.|..+.+-|. ..++++++.|.++++|-
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k---kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK---KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWV 316 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC---eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEE
Confidence 35 489999999999975 666777899999999863 3334445579899999999886 46899999999999984
Q ss_pred CCCCc----eeeeE-EecCceEEEEEc-cCCCEEEEEeCCCc--------------------------------------
Q 021319 96 ARSGK----CSQQA-ELSGENINITYK-PDGTHIAVGNRDDE-------------------------------------- 131 (314)
Q Consensus 96 ~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~d~~-------------------------------------- 131 (314)
.+++. ..+.. .+..++.++.|. .+|..+.+++.|++
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 44322 11111 112223334433 34444444444444
Q ss_pred ---------------------------EEEEEccCCeE-eeeec------cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 132 ---------------------------LTILDVRKFKP-IHRRK------FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 132 ---------------------------i~i~d~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
...|++++... .+..+ ....+.++..+++|+..+.|...|.|.+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 44444443322 11111 123467788899999999999999999999
Q ss_pred CCCCCceeee---eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319 178 YPSLRPLDTV---VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 178 ~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
++++.....+ ..|..+|+.++.+..++.+++++.+|.+++||..+...+..+ ....++..+..+.....+|.+-.|
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-RLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-ccCCCcceeeeeehhhhhhhhcCc
Confidence 9887666666 589999999999999999999999999999999877655554 345578888899999999999999
Q ss_pred ceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 255 LFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 255 ~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
-.|.++|+.+.+.++++. |.+.|+++.|||+|+.|++++-| +++|+||+
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDl 605 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDL 605 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEec
Confidence 999999999999999987 78899999999999999999988 58999987
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.6e-25 Score=189.66 Aligned_cols=250 Identities=18% Similarity=0.276 Sum_probs=208.5
Q ss_pred EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceE
Q 021319 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENI 112 (314)
Q Consensus 34 ~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~ 112 (314)
++++...+-.+++|+.. +...|+..|.++..- .....+++|+.|..+.+|.+..-.++..+.. ...+-
T Consensus 6 ~~m~~~~~t~Lr~~~~~----------~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR----------EFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccceeeeeeccccccch----------hhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 34455556667788753 345788888888763 3356889999999999999876665555443 44566
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc
Q 021319 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191 (314)
Q Consensus 113 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 191 (314)
++.|+++..+|+.|..+|+|++||+...+.+++.. +-..+..+.|+|-+.+++.++.+..+.+|+.+...+...+.+|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 89999999999999999999999999877666543 23457788899999999999999999999998888888888999
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE
Q 021319 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~ 271 (314)
..+.++.|+|+|++++.|+.|..+++||...++.+.+|+.|+..+.++.|+|..-.+++||.|..+++||+++-..+-..
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876666543
Q ss_pred e-ccCccceeEEcCCCCeeEEEec
Q 021319 272 P-CRAAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 272 ~-~~~~i~~v~~~~~~~~la~~~~ 294 (314)
. .-..|.+++|+|++..+++|-.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCccCCceeeeecCCceeeecCch
Confidence 3 2457999999999988765543
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.6e-22 Score=174.61 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=201.9
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC----------CCEEEEEeCCCcE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----------ADLIATASGDKTV 91 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----------~~~l~s~~~D~~v 91 (314)
..-.+.|++..+.|.+.-.|.++.|||+..-.. .......-.|+.-|..+.--|-+ ...+++++.|++|
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 345678999999999999999999999964221 11222233466655554333210 2358899999999
Q ss_pred EEEeCCCCc---eeeeE-----------------------------------EecCceEEEEEccCCCEEEEEeCCCcEE
Q 021319 92 RLWDARSGK---CSQQA-----------------------------------ELSGENINITYKPDGTHIAVGNRDDELT 133 (314)
Q Consensus 92 ~iwd~~~~~---~~~~~-----------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 133 (314)
|+||+..+. ..+.. .......+++.+|+|++|++|..-|.++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999986521 10000 0011234688999999999999999999
Q ss_pred EEEccCCeEeeeec-cCcceeeEEeccC---CCeEEEEcCCceEEEEeCCC-CCceeeeeecc-----------------
Q 021319 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHT----------------- 191 (314)
Q Consensus 134 i~d~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~----------------- 191 (314)
++++.........+ +..++.++.++.. .++++.++.+.-|++||... ..++.++.+|.
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 99998766554443 4567777777654 24566666777777776432 11112222221
Q ss_pred --------------------------------cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---cccCe
Q 021319 192 --------------------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPV 236 (314)
Q Consensus 192 --------------------------------~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v 236 (314)
..++.+++.|+.+++++++.|..|+|||+..++..+.|++ ++...
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 2356778889999999999999999999999999999976 45667
Q ss_pred EEEEEccCCcEEEEecCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecCCccc
Q 021319 237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
-.+...|.|-|||+.-.|..+-++|..+|+.+.+ +.|...|+.+.|.+|-+-|++.+.|+=+|
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 7889999999999999999999999999998866 45677899999999999999999996555
No 133
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9e-24 Score=180.33 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=201.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
++..+..|.+.|+++....+|+.|+|||.|-+|++|+...+.. ...-.+..|.+.|.|+++...+..++||||-|+.|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~I 142 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKI 142 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--hhHhhhhcccchheeeeecccCceeEEecCCCccE
Confidence 4566778999999999999999999999999999999876431 12224678999999999944556899999999999
Q ss_pred EEEeCCCCce--eeeEE----------ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEec
Q 021319 92 RLWDARSGKC--SQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN 158 (314)
Q Consensus 92 ~iwd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~ 158 (314)
.+||+.++.. ....+ ....+.+++.++.|..++.|+..+.+++||.++.+.+.+.. +...+..+..+
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN 222 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc
Confidence 9999998732 21111 12335578899999999999999999999999987776654 44568889999
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
.+|..+++++.||+|++|++...+++.++..|...++++..+|+-+.+.+|++||.|..=|+++......+-..+.||..
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~ 302 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLK 302 (735)
T ss_pred CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999885443334345667777
Q ss_pred EEEccCCcEEEEecCCceEEEEEC
Q 021319 239 ISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
+..+....-+=+++.|+.|.-|..
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred hhhccccCCceeeeccccceecCC
Confidence 777644444456777777877754
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=2.9e-23 Score=166.86 Aligned_cols=204 Identities=25% Similarity=0.439 Sum_probs=157.1
Q ss_pred eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.++.+|...=+.|+|||-.. .|+||..-+.|++|...++.. .+-...+.+|+.+|..|+|+|....+|+|||.|++|+
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEE
Confidence 45679999999999999543 589999999999998876332 2233457789999999999999999999999999999
Q ss_pred EEeCCCCc---eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319 93 LWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 93 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
|||+|.+. ++....+.+.+..+.|+..-.+|++|+.||++.|||+|..+.
T Consensus 284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~--------------------------- 336 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS--------------------------- 336 (440)
T ss_pred EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---------------------------
Confidence 99999883 444433445555688888878899999999999999887532
Q ss_pred CceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcE----------------EEEEeeec
Q 021319 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML----------------CVRTFTKL 232 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~----------------~~~~~~~~ 232 (314)
.+|+..+.-|..+|+++.|+|.. ..+++++.|.+|.+||+.... ..+.+..|
T Consensus 337 -----------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH 405 (440)
T KOG0302|consen 337 -----------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH 405 (440)
T ss_pred -----------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe
Confidence 24566777899999999999954 578888999999999985311 11222233
Q ss_pred c--cCeEEEEEccCC-cEEEEecCCce
Q 021319 233 E--WPVRTISFSHTG-DYIASASEDLF 256 (314)
Q Consensus 233 ~--~~v~~~~~sp~~-~~l~s~s~d~~ 256 (314)
. ..+..+.|+++- .+|+|-+.||.
T Consensus 406 qGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 406 QGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cchhHhhhheeccCCCCeEEEecccce
Confidence 2 247778899874 67888888884
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-24 Score=185.75 Aligned_cols=237 Identities=22% Similarity=0.355 Sum_probs=204.8
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
+.+..|...|.++..-..+..+++|+.|-.+-+|.+.... ....+.+|..+|.++.|++.. .+|++|+.+|+|++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcch-hhhcccccCCceee
Confidence 4567799999999987778899999999999999875322 223478999999999999874 68899999999999
Q ss_pred EeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEEcCCc
Q 021319 94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNG 171 (314)
Q Consensus 94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 171 (314)
||+..++.++.+. +...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.++. ..-+..+.++|+|.+.+.++++.
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 9999887666543 345567888999999999999999999999997777766653 44577889999999999999999
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
.+++|++..++.+..+..|++.+..+.|+|..-.+++|+.|+++++||+++.+.+.........|.+.+|+|++..+++|
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 99999999999888999999999999999999999999999999999999988887776667789999999999999998
Q ss_pred cCCc
Q 021319 252 SEDL 255 (314)
Q Consensus 252 s~d~ 255 (314)
-.+.
T Consensus 257 ~q~s 260 (825)
T KOG0267|consen 257 EQIS 260 (825)
T ss_pred chhh
Confidence 7664
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-22 Score=175.63 Aligned_cols=239 Identities=18% Similarity=0.360 Sum_probs=193.6
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-ceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE
Q 021319 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP 142 (314)
Q Consensus 64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 142 (314)
.|....+.++|.|++ +.|++++.|+.|++|+..+- .-.......+ ....++...++++++++.++++.+|....++.
T Consensus 11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g-~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISG-ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccC-ceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 688889999999985 59999999999999987654 2222222111 22233444567999999999999999887654
Q ss_pred eee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319 143 IHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~ 221 (314)
-.- .....++++++++-+|+.+++++.|-.|++.+..+......+.+|.++|.++.++|++.+||+.+-||.|++||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 311 2234578899999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred CcEEEEEeeec--------ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec---cCccceeEEcCCCCeeE
Q 021319 222 EMLCVRTFTKL--------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 222 ~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la 290 (314)
++.+.+++.+. ...+..++|+|++..|+....|+.|.+++...+.....+.. ...++.+.|+|+|++||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 88777665432 23467789999999999999999999999999887776642 33488999999999999
Q ss_pred EEecCCcccccccceEEecccc
Q 021319 291 YAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 291 ~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
+++-| |.+-||+.+
T Consensus 249 As~~~--------g~I~vWnv~ 262 (933)
T KOG1274|consen 249 ASTLD--------GQILVWNVD 262 (933)
T ss_pred eeccC--------CcEEEEecc
Confidence 99988 467788876
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-23 Score=181.36 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=187.5
Q ss_pred cEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319 22 KVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (314)
Q Consensus 22 ~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 100 (314)
.+..|.|+. +.++||||+..|.|-+||+..... ...-..+..|...++++.|++..+++|+|||.||+|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 355677773 357899999999999999975221 112235778999999999999999999999999999999999876
Q ss_pred eeeeEEecCc-eEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeee--eccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 101 CSQQAELSGE-NINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
......-..+ +..+.|+| .+..++++...|.+.+||+|.++.-.. .-+..++.++.|+|++.++++|+.|+++++|
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 5544433333 33477877 578899999999999999998754322 2356789999999999999999999999999
Q ss_pred eCCCCCceeeeee-cccceEEEEECCCCCE-EEEeeC--CCeEEEeeCCCcEE-EEEeeecccCeEEEEEcc-CCcEEEE
Q 021319 177 TYPSLRPLDTVVA-HTAGCYCIAIDPMGRY-FAVGSA--DSLVSLWDISEMLC-VRTFTKLEWPVRTISFSH-TGDYIAS 250 (314)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~-l~t~~~--dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~s 250 (314)
+..+.++...... ...++.+++|-|..++ ||+++. |-.|+|||++...+ ..++..|...+..++|.. |-..|.+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 9986654433332 3467899999999876 666654 55899999987654 467778888899999965 4567889
Q ss_pred ecCCceEEEEECCCC
Q 021319 251 ASEDLFIDISNVHTG 265 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~ 265 (314)
+|.|+.+....+..+
T Consensus 328 ~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNA 342 (839)
T ss_pred ecCccHHHHhhhhcc
Confidence 999998865554443
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-22 Score=158.75 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=164.5
Q ss_pred ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeEE----ecCceEEEEEcc-CCCEEEE
Q 021319 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAE----LSGENINITYKP-DGTHIAV 125 (314)
Q Consensus 63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------~~~~~~----~~~~~~~~~~~~-~~~~l~~ 125 (314)
.-|.+.|+.|...+..+.+++||+.||.|.+||+.+.. |+.... ++..+..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999999989999999999999999987543 110000 111233455666 5667778
Q ss_pred EeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC---CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC
Q 021319 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG---EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202 (314)
Q Consensus 126 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 202 (314)
++.|.++++||..+.+.....+.+..+..-+|+|-. -.++++..+-.++++|+.++....++.+|..+|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 899999999999999988888777777777787754 35667778889999999999999999999999999999998
Q ss_pred CCE-EEEeeCCCeEEEeeCCCc-EEEEEe--------------eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319 203 GRY-FAVGSADSLVSLWDISEM-LCVRTF--------------TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 266 (314)
Q Consensus 203 ~~~-l~t~~~dg~i~vwd~~~~-~~~~~~--------------~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~ 266 (314)
..+ ||+|+.||.|++||++.. -|...+ ..|...|..++|+.++.++++.+.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 876 889999999999999754 222222 2355678999999999999999999999999998875
Q ss_pred e
Q 021319 267 T 267 (314)
Q Consensus 267 ~ 267 (314)
.
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-22 Score=156.68 Aligned_cols=231 Identities=20% Similarity=0.299 Sum_probs=169.3
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-----ceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEE
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTI 134 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i 134 (314)
.+++|.+.|++++|+.++ ..|++++.|++||+|+++.- ++.++...-.....+.|.||-+.+++.. ...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 578999999999999874 68999999999999998753 2333322234677899999988776554 4556888
Q ss_pred EEccCCeE----e---------eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECC
Q 021319 135 LDVRKFKP----I---------HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP 201 (314)
Q Consensus 135 ~d~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 201 (314)
|-+...+. . ...++...+..+..--.+.++.+++.+..+.+|++. ++.+..+......-+..+++|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 87643211 0 011122334445555566788889999999999997 555666555555667889999
Q ss_pred CCCEEEEeeCCCeEEEeeC---CCc-----EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC-------CC
Q 021319 202 MGRYFAVGSADSLVSLWDI---SEM-----LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-------GR 266 (314)
Q Consensus 202 ~~~~l~t~~~dg~i~vwd~---~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-------~~ 266 (314)
+|+++|+++----|++|.+ +++ ..+-.+++|...|..++|||+...++|+|.||.+++||..- .+
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999998888999986 222 23456789999999999999999999999999999999642 22
Q ss_pred eEEEEe---c--cCccceeEEcCCCCeeEEEe
Q 021319 267 TVHQIP---C--RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 267 ~~~~~~---~--~~~i~~v~~~~~~~~la~~~ 293 (314)
.++..+ + .+.-..++.+|++..||.+.
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 333331 1 23344899999999887554
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-22 Score=154.35 Aligned_cols=221 Identities=24% Similarity=0.269 Sum_probs=155.8
Q ss_pred cceeeecccccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCC
Q 021319 12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGD 88 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D 88 (314)
...+|+||.++|..++|.. .|..||||++||.|.||.-+.+ ...+..+...|...|++++|.|.+ +-+|++++.|
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 4567899999999999987 7999999999999999987654 344556778899999999999976 3467899999
Q ss_pred CcEEEEeCCCC-ce-e-eeEE-ecCceEEEEEccC---CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319 89 KTVRLWDARSG-KC-S-QQAE-LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (314)
Q Consensus 89 ~~v~iwd~~~~-~~-~-~~~~-~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
|.|.|.+.++. .. . +... +.-...+++|.|. |..+-.+.. ..-
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~------------------------------~~~ 175 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA------------------------------AKV 175 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc------------------------------ccc
Confidence 99999987654 11 1 1111 1222345666664 211000000 001
Q ss_pred CeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCC----CEEEEeeCCCeEEEeeCCCcE---EEEEeeec
Q 021319 162 EMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEML---CVRTFTKL 232 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~----~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~ 232 (314)
..+++++.|..+++|.+...+ .-.++.+|..-+..++|.|.- .+||+++.||++.||-.+... ....++..
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 234445555555555554322 223467899999999999864 479999999999999876321 12334456
Q ss_pred ccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
+.++..++||+.|..|+.++.|..+.+|--..
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 77899999999999999999999999996543
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=161.02 Aligned_cols=261 Identities=15% Similarity=0.199 Sum_probs=197.2
Q ss_pred EEeeCCCc-EEEeecCCCCCCceeeEEeecCCCCE-EEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCceee-eEEecCce
Q 021319 36 ASGSVDQT-ARVWHIEPHGHGKVKDIELRGHADSV-DQLCWDPKHADLIATA-SGDKTVRLWDARSGKCSQ-QAELSGEN 111 (314)
Q Consensus 36 ~s~~~D~~-v~iw~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~-~~D~~v~iwd~~~~~~~~-~~~~~~~~ 111 (314)
.+++.|.. +.+||+.++. ....+++..... ..+.. -++++++++ ..-..+.+|.+....... .....+..
T Consensus 11 sssS~d~~~~~~~dl~TGt----~~~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v 84 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGT----SLLQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV 84 (476)
T ss_pred eccCCCCcceeEEecCCCc----eeEEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccce
Confidence 33445554 9999997643 223344331111 11111 112344444 445678899987654433 33445667
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCC---------CC
Q 021319 112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---------SL 181 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~ 181 (314)
.+++-+|.|.+|+.|+..+.+.+|.+.++..+... .+-..+.++.|+-++.++++++.||.|.+|.+. ..
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 78999999999999999999999999998877654 455679999999999999999999999999752 34
Q ss_pred CceeeeeecccceEEEEECCC--CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319 182 RPLDTVVAHTAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 259 (314)
Q Consensus 182 ~~~~~~~~~~~~i~~i~~~~~--~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v 259 (314)
+|+..+..|.-+|+.+.+.+. ..+++|++.|.++++||+..+..+.++ ..+.++.+++.+|-++.+..|+++|.|.+
T Consensus 165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCcceEEe
Confidence 577778899999999988775 458999999999999999999877776 36678999999999999999999999999
Q ss_pred EECCCCC----------------eEEEE-eccC--ccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 260 SNVHTGR----------------TVHQI-PCRA--AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 260 ~~~~~~~----------------~~~~~-~~~~--~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
.++.+.. .+..+ .+.+ .|+|++.|-|+.+|++|+.| |.++||++
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~VcvWdi 306 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GKVCVWDI 306 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CCEEEEec
Confidence 8865422 11121 1334 89999999999999999977 78999987
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.6e-22 Score=168.57 Aligned_cols=240 Identities=18% Similarity=0.293 Sum_probs=182.3
Q ss_pred eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCE--EEEEeCCCcEEE
Q 021319 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH--IAVGNRDDELTI 134 (314)
Q Consensus 57 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~d~~i~i 134 (314)
.....+.||.+.|.+++..|. +.+|++|+.||+||||.+.+|+|+....+.+.+.+++|+|.+.. |+++.. ..+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec-CceEE
Confidence 344578899999999999996 57999999999999999999999999999999999999997653 444433 33545
Q ss_pred EEccCCe--------------------------------------EeeeeccCcceeeEEeccCCCeEEEEcCC---ceE
Q 021319 135 LDVRKFK--------------------------------------PIHRRKFGYEVNEIAWNMTGEMFFLTTGN---GTV 173 (314)
Q Consensus 135 ~d~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~ 173 (314)
.+..-+. ....+.+..++..+.||-.|.++++...+ ..+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4432110 01123455678899999999999887653 345
Q ss_pred EEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 253 (314)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~ 253 (314)
.+..+...+...-+....+-+.++.|+|...+|+++++. .|++||+.+...++++......+..++.+|.|.-|+.++.
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 555554433332333345668999999999999988754 5999999886666555444456999999999999999999
Q ss_pred CceEEEEECCCC-CeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 254 DLFIDISNVHTG-RTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 254 d~~v~v~~~~~~-~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
|+.+-.+|+.-+ ++.+.+. |...+++|+||+..++||+|++|+..+
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 999999999754 4455554 466899999999999999999885433
No 143
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.2e-22 Score=156.61 Aligned_cols=244 Identities=20% Similarity=0.313 Sum_probs=202.0
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEc-
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDV- 137 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~- 137 (314)
.++.||.+.|..++.... ..++.+++.|.+.+||.+.+++|..++..+ +...++.|++.+.++++++.|++-.||..
T Consensus 142 re~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 367899999999887654 458999999999999999999999887654 45567999999999999999999999962
Q ss_pred ---cCCeE------------------------------------eeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEe
Q 021319 138 ---RKFKP------------------------------------IHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 138 ---~~~~~------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (314)
+.+++ +.... +-..+.+..|-..++.+++++-|.+..+|+
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 11110 00000 112345566778889999999999999999
Q ss_pred CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~ 256 (314)
.+..+++..+.+|..+.+.++-+|..+++++.+.|-+.++||.+.. ..+..|.+|...|.++.|.-+. .+++||.|..
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrT 379 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRT 379 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCce
Confidence 9999999999999999999999999999999999999999999743 4567899999999999997755 4779999999
Q ss_pred EEEEECCCC-CeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 257 IDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 257 v~v~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|+|||+... .++..+....+++.|+.+..++.||.--+.+ -+|||+++-
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNR--------qvRlfDlnG 429 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNR--------QVRLFDLNG 429 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCc--------eEEEEecCC
Confidence 999999864 4566777788999999999889999887665 689999864
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.2e-23 Score=186.53 Aligned_cols=247 Identities=17% Similarity=0.267 Sum_probs=195.2
Q ss_pred cccEEEEEECCCCCE----EEEeeCCCcEEEeecCCC--CCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~----l~s~~~D~~v~iw~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
..+=+.|+|.+.|+. |+.|..||.|.+|+...- +...........|.++|..+.|++..+++++||+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346788999998876 888889999999998652 11111122456899999999999999899999999999999
Q ss_pred EeCCCCceeeeE---EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeEEeccCC-CeEE
Q 021319 94 WDARSGKCSQQA---ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTG-EMFF 165 (314)
Q Consensus 94 wd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~ 165 (314)
||+.+-+..... ....++.+++|+..- ..|++++.++...|||+|..+++-..... ..+..++|+|+. ..++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874432222 234567789998754 45678888889999999998776554322 347789999987 4555
Q ss_pred EEcCC---ceEEEEeCCC-CCceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319 166 LTTGN---GTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 166 ~~~~~---g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 240 (314)
+++++ -.+.+||++. ..+++.+.+|..+|.+++|.+.+ ++|++++.|+.|.+|+..+++.+..+.....-+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 55554 3677788753 45788889999999999999866 8899999999999999999999988877666689999
Q ss_pred EccCCc-EEEEecCCceEEEEECCCCC
Q 021319 241 FSHTGD-YIASASEDLFIDISNVHTGR 266 (314)
Q Consensus 241 ~sp~~~-~l~s~s~d~~v~v~~~~~~~ 266 (314)
|+|... .++.++-||.|.|+.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999886 78888999999999987643
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=3.1e-21 Score=155.25 Aligned_cols=241 Identities=21% Similarity=0.330 Sum_probs=174.5
Q ss_pred ecccccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCC------------CceeeEEeecCCCCEEEEEEcCCCCCEE
Q 021319 17 TGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGH------------GKVKDIELRGHADSVDQLCWDPKHADLI 82 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l 82 (314)
-+|.+.++.+.-++-++ +.++=+..|.|+||++...-+ ...+.+.+.+|...=++|+|+|.....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 36888888888777765 444446789999999853211 1123356778999899999999766678
Q ss_pred EEEeCCCcEEEEeCCCCceee-eEEec---CceEEEEEccC-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEe
Q 021319 83 ATASGDKTVRLWDARSGKCSQ-QAELS---GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 157 (314)
+||..-+.|++|...++.... ..++. ..+-.++|+|. ...+++++-|++|+|||+|....
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--------------- 292 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--------------- 292 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc---------------
Confidence 899999999999988775432 11222 22234677774 45667777788888888775321
Q ss_pred ccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc---EEEEEeeeccc
Q 021319 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEW 234 (314)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~ 234 (314)
++......|.+.|+.|+|+....+||+|+.||+++|||+++. +.+.+|+.|..
T Consensus 293 ------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 293 ------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred ------------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 011122468889999999998889999999999999999864 45778999999
Q ss_pred CeEEEEEccC-CcEEEEecCCceEEEEECCCCCe--------EE---------EEec--cCccceeEEcCCC-CeeEEEe
Q 021319 235 PVRTISFSHT-GDYIASASEDLFIDISNVHTGRT--------VH---------QIPC--RAAMNSVEWNPKY-NLLAYAG 293 (314)
Q Consensus 235 ~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~~~~--------~~---------~~~~--~~~i~~v~~~~~~-~~la~~~ 293 (314)
+|++|.|+|. ...|++++.|..|.+||+..-.- .. -|-| ...+-.|+||+.. .+|++.+
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 9999999986 56788889999999999854211 11 1123 3468899999974 5667777
Q ss_pred cCC
Q 021319 294 DDK 296 (314)
Q Consensus 294 ~d~ 296 (314)
.|+
T Consensus 429 ~dG 431 (440)
T KOG0302|consen 429 IDG 431 (440)
T ss_pred ccc
Confidence 775
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.7e-20 Score=147.40 Aligned_cols=239 Identities=23% Similarity=0.431 Sum_probs=175.2
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeE-EecCceEEEEEcc--CCCEEEEEeCCCcEEE
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQA-ELSGENINITYKP--DGTHIAVGNRDDELTI 134 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~d~~i~i 134 (314)
..+|.+-|.++.|++. +..+++|+.|++++|||.++.. +.... ...+.+..+.|.+ -|..+|+++.|+++.|
T Consensus 9 ~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 3589999999999987 5789999999999999975432 22222 2345667787764 4899999999999999
Q ss_pred EEccC--C-----eEeeee---ccCcceeeEEeccC--CCeEEEEcCCceEEEEeCCCCCceee------ee-------e
Q 021319 135 LDVRK--F-----KPIHRR---KFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYPSLRPLDT------VV-------A 189 (314)
Q Consensus 135 ~d~~~--~-----~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~------~~-------~ 189 (314)
|.-.. . +.+.+. .....+.++.|.|. |-.+++++.+|.+++|.......+.. +. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 97521 1 112111 12356888999886 56778889999999998754322211 11 2
Q ss_pred cccceEEEEECCCC---CEEEEeeCC-----CeEEEeeCCC----cEEEEEeeecccCeEEEEEccC----CcEEEEecC
Q 021319 190 HTAGCYCIAIDPMG---RYFAVGSAD-----SLVSLWDISE----MLCVRTFTKLEWPVRTISFSHT----GDYIASASE 253 (314)
Q Consensus 190 ~~~~i~~i~~~~~~---~~l~t~~~d-----g~i~vwd~~~----~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~s~ 253 (314)
+.....|+.|+|.. .+||.|+.+ +.+.||.... .+.+.++.++..+|.+|+|.|+ ..+||+|+.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 45567899999753 578888776 4789997643 3445677889999999999997 368999999
Q ss_pred CceEEEEECCCCC-----------------eEEEEe----ccCccceeEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 254 DLFIDISNVHTGR-----------------TVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 254 d~~v~v~~~~~~~-----------------~~~~~~----~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
|| |+||.+...+ .+..+. |.+.|-.+.||-.|.+|+++|+| |.+|+|-
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD--------G~VRLWk 316 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD--------GCVRLWK 316 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC--------ceeeehh
Confidence 99 9999987311 112221 46789999999999999999987 6888884
No 147
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=168.33 Aligned_cols=237 Identities=22% Similarity=0.321 Sum_probs=189.2
Q ss_pred eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---ceEE-EEEcc-CCCEEEEEeCCCcE
Q 021319 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENIN-ITYKP-DGTHIAVGNRDDEL 132 (314)
Q Consensus 58 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---~~~~-~~~~~-~~~~l~~~~~d~~i 132 (314)
...++.||+..|..++..+. ..++++|.|+++++|+...+.......+.+ -+.. +++.+ ++-.+++|+.|..+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 45578999999999887653 478999999999999987766554333322 2222 56664 44568999999999
Q ss_pred EEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319 133 TILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (314)
Q Consensus 133 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~ 211 (314)
.+|.+....|.... .|...++++.....+. +++++-|.++++|..... ...+.+|...|++++.-|++ .++||+.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC-cEEeccC
Confidence 99999988887764 3556777777665665 889999999999986543 34588999999999999888 7899999
Q ss_pred CCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcCCCCeeE
Q 021319 212 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~la 290 (314)
|.+|++|.- ++++++|.+|...|+.+++-|++. ++|++.||.|+.|++ +|..+..+ .|..-|++++-.+++..++
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEE
Confidence 999999975 777899999999999999977655 679999999999999 66666554 4677899999777788999
Q ss_pred EEecCCcccccccceEEecccc
Q 021319 291 YAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 291 ~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
++|+| +++|||.-+
T Consensus 236 s~gED--------rtlriW~~~ 249 (745)
T KOG0301|consen 236 STGED--------RTLRIWKKD 249 (745)
T ss_pred EecCC--------ceEEEeecC
Confidence 99987 578888754
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=155.89 Aligned_cols=292 Identities=17% Similarity=0.255 Sum_probs=207.4
Q ss_pred eeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce-eeEEeec--CCCCEEEEEEcCCCCCEEEEE
Q 021319 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRG--HADSVDQLCWDPKHADLIATA 85 (314)
Q Consensus 9 ~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~--h~~~v~~l~~~~~~~~~l~s~ 85 (314)
+.++++++.+|.+-|+.++||.++++|++||.|..+++|+++..-..++ +.+.+.+ |...|.+|.|+.. +..+.||
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecC
Confidence 3467888999999999999999999999999999999999864222222 2233444 5568999999875 5788999
Q ss_pred eCCCcEEEEeCCCCceeeeEEec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEEec
Q 021319 86 SGDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWN 158 (314)
Q Consensus 86 ~~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~ 158 (314)
+.+++|.+.|+.+.+.+...... +.+..+..+|-.+.+++.+.++.+.+||.+..+ ++.....+.....+.|+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 99999999999988766555443 356678889999999999999999999998754 22223334455677888
Q ss_pred cCCC-eEEEEcCCceEEEEeCCCC-Cceee------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEe
Q 021319 159 MTGE-MFFLTTGNGTVEVLTYPSL-RPLDT------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTF 229 (314)
Q Consensus 159 ~~~~-~~~~~~~~g~~~~~~~~~~-~~~~~------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~ 229 (314)
|... ++++....+-+.+|+.... +++.. ++.....-....|+|+|+.|.+--....-.+||+-...| +.++
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 8765 4556677788889987532 22222 112222335678999999888776666778888866433 2222
Q ss_pred e-ec-----ccCeEEEEEccCCcEEEEecCCceEEEEECCC-----C-----C-------------eEEEEe-ccCccce
Q 021319 230 T-KL-----EWPVRTISFSHTGDYIASASEDLFIDISNVHT-----G-----R-------------TVHQIP-CRAAMNS 279 (314)
Q Consensus 230 ~-~~-----~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-----~-----~-------------~~~~~~-~~~~i~~ 279 (314)
. +. ...+.+++|-- ...++|||.+-.+++|.+.. | + .+..+. |+.-++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2 11 11356677754 44499999999999998642 1 1 011111 4556899
Q ss_pred eEEcCCCCeeEEEecCCcccccccceEEecc
Q 021319 280 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 280 v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
|.|+|...+|.+.|..+ .+|||.
T Consensus 363 VRF~~H~~~l~SSGVE~--------~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVEN--------SFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhh--------heeccc
Confidence 99999999999999665 577875
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=158.56 Aligned_cols=241 Identities=15% Similarity=0.229 Sum_probs=197.2
Q ss_pred cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
..+|.+.+|.|+|+ .++++|..+....||+++.....+. ...|+. ..+.....+|++ ++|+..+..|.|.+--..
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhh
Confidence 56899999999998 8999999999999999764433222 223443 345666777774 699999999999999999
Q ss_pred CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--eeeEEeccCCCeEEEEcCCceEEE
Q 021319 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
++..+..+...+....++|+.+++.|++.+.+|.|.+||++....+++...... ...++.++++.++++|+..|-|.+
T Consensus 334 T~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred hhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 999888888999999999999999999999999999999999988877654433 455677899999999999999999
Q ss_pred EeCC------CCCceeeeeecccceEEEEECCCCCEEEEeeCC--CeEEEeeCCCcEEEEEeeecc---cCeEEEEEccC
Q 021319 176 LTYP------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLE---WPVRTISFSHT 244 (314)
Q Consensus 176 ~~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~---~~v~~~~~sp~ 244 (314)
|+.. ..+|+..+..-...|+.+.|+|+.+.||.++.. ..+|+-.+.+......++... ..|+|++|||.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 9964 346777777777889999999999999988764 578888887765554443322 35899999999
Q ss_pred CcEEEEecCCceEEEEECC
Q 021319 245 GDYIASASEDLFIDISNVH 263 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~ 263 (314)
+.+||.|.++|.+++|.++
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999765
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-19 Score=155.86 Aligned_cols=240 Identities=15% Similarity=0.254 Sum_probs=185.1
Q ss_pred ccceeeeccc-ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 11 LHSREYTGHK-KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 11 ~~~~~~~gH~-~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
...+++.||. ..|.+++|+ ++.+|.|.+.+|+|.-||+.+.. +.+.+....++|.+++.+|.+ ..++.|+.||
T Consensus 59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk----~~~~~d~~gg~IWsiai~p~~-~~l~IgcddG 132 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK----QKYNIDSNGGAIWSIAINPEN-TILAIGCDDG 132 (691)
T ss_pred eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc----eeEEecCCCcceeEEEeCCcc-ceEEeecCCc
Confidence 3567788885 479999999 67789999999999999997532 344566778899999999985 6778889999
Q ss_pred cEEEEeCCCCceeeeEEe---cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee--ec---cCc----ceeeEEe
Q 021319 90 TVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RK---FGY----EVNEIAW 157 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~---~~~----~~~~~~~ 157 (314)
.+...+...+.......+ ++..++++|+|++..++.|+.||.|++||....+.++. .+ ... -+.++.+
T Consensus 133 vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLF 212 (691)
T ss_pred eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEE
Confidence 888888887776544322 46788999999999999999999999999998877662 12 122 1344444
Q ss_pred ccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE----EEEeeecc
Q 021319 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLE 233 (314)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~ 233 (314)
- ....++++...|++.+|+......++....|...|.|++.++++.++++++.|+.|.-|...+... ......|.
T Consensus 213 L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~ 291 (691)
T KOG2048|consen 213 L-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHA 291 (691)
T ss_pred e-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCc
Confidence 3 567788899999999999998888888889999999999999999999999999999998765532 12223456
Q ss_pred cCeEEEEEccCCcEEEEecCCceEEE
Q 021319 234 WPVRTISFSHTGDYIASASEDLFIDI 259 (314)
Q Consensus 234 ~~v~~~~~sp~~~~l~s~s~d~~v~v 259 (314)
..|.+++..++ .+++|+.|..+.+
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEE
Confidence 66777766555 6666666655433
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=5.8e-22 Score=156.79 Aligned_cols=266 Identities=17% Similarity=0.290 Sum_probs=188.1
Q ss_pred cccccEEEEEECCCC----CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 18 GHKKKVHSVAWNCTG----TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 18 gH~~~V~~v~~s~~g----~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
.|...-+.++|+.|- .++|.||.-|.|||.|+.... ..-.+.+|..+|+.+.++|...++++|+|.|.+||+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 377778889998663 479999999999999987543 233578999999999999999999999999999999
Q ss_pred EeCCCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319 94 WDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 94 wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
|++++..|+..+. +..+++++.|+++|..+++++.|.++++|++...+....++.. ..|++++...=+...
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRPFPTP 237 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCcCCcc
Confidence 9999999987653 3567889999999999999999999999999754332222211 223333221000000
Q ss_pred CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc--------------EEEEEeeecccC
Q 021319 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--------------LCVRTFTKLEWP 235 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~ 235 (314)
...+.++ .+-..|...|-|+.|- |.++++-+-++.|..|..-+. ..+.++......
T Consensus 238 --~~~fp~f------st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 238 --KTHFPDF------STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred --ccccccc------cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 0000000 0122466666676664 678888888999999987221 112223222333
Q ss_pred eEEE--EEccCCcEEEEecCCceEEEEECCCCCeE--EEEe---ccCccceeEEcCCCCeeEEEecCCcccccc
Q 021319 236 VRTI--SFSHTGDYIASASEDLFIDISNVHTGRTV--HQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 302 (314)
Q Consensus 236 v~~~--~~sp~~~~l~s~s~d~~v~v~~~~~~~~~--~~~~---~~~~i~~v~~~~~~~~la~~~~d~~~~~~~ 302 (314)
+.-+ +|.|-.++||.|.+.|.+.+||+....+. .++. ....|+..+|+.++.+|+...+|+..|.++
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4444 56688999999999999999999876543 2222 245799999999999999999997766543
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.9e-22 Score=181.15 Aligned_cols=282 Identities=20% Similarity=0.344 Sum_probs=207.1
Q ss_pred EEEEECCCCC-EEEEe----------eCCCcEEEeecCCCCCCc-eeeEEeecCCCCEEEEEEcCCCCC---EEEEEeCC
Q 021319 24 HSVAWNCTGT-KLASG----------SVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHAD---LIATASGD 88 (314)
Q Consensus 24 ~~v~~s~~g~-~l~s~----------~~D~~v~iw~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~---~l~s~~~D 88 (314)
-.++|+|++. ++++| +.+.++.||.++...... .....-..-...-+.|+|.+.+.. +|+.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3578999986 45544 335577777765322110 010000112334578999877654 69999999
Q ss_pred CcEEEEeCCCC---ce---e-eeEEecCceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEeeee---ccCcceeeEEe
Q 021319 89 KTVRLWDARSG---KC---S-QQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRR---KFGYEVNEIAW 157 (314)
Q Consensus 89 ~~v~iwd~~~~---~~---~-~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~ 157 (314)
|.|-+||...- .. + ....+++.+..+.|++... +|++|+.+|.|.|||+.+.+.-... ....++.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997642 11 1 2234567778899999665 9999999999999999876543332 23457889999
Q ss_pred ccCCC-eEEEEcCCceEEEEeCCCCCceeeeeeccc--ceEEEEECCCC-CEEEEeeCCC---eEEEeeCCC-cEEEEEe
Q 021319 158 NMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMG-RYFAVGSADS---LVSLWDISE-MLCVRTF 229 (314)
Q Consensus 158 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~-~~l~t~~~dg---~i~vwd~~~-~~~~~~~ 229 (314)
+..-. .++.++.+|+..+||++..+++..+.-+.. .+..++|+|+. +.+++++.|. .|.+||++. ...++.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 87654 455666778999999998887766654444 36789999986 4566666654 699999874 3456778
Q ss_pred eecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCC-eeEEEecCCcccccccceE
Q 021319 230 TKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVF 306 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~-~la~~~~d~~~~~~~~~~~ 306 (314)
++|...|.+++|++.+ ++|+|.+.|+.|.+|+..+|+.+.+++. ...+..|.|+|..+ .+|.++-| |.+
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd--------gkI 321 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD--------GKI 321 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec--------cce
Confidence 8999999999999977 8999999999999999999999999986 34689999999876 77777766 678
Q ss_pred EeccccC
Q 021319 307 RIYGFEN 313 (314)
Q Consensus 307 ~~~~~~~ 313 (314)
.||.++.
T Consensus 322 ~I~sl~~ 328 (1049)
T KOG0307|consen 322 SIYSLQG 328 (1049)
T ss_pred eeeeeec
Confidence 8988753
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=167.07 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=192.9
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--CCEEEEEeCCCcEEEEe
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATASGDKTVRLWD 95 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~D~~v~iwd 95 (314)
+-+..+++++.||+|++|++|..-|.+|||++..-. .......|...|.+|.++... ..+|+|++.|..|.++|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 345679999999999999999999999999986422 223467899999999997432 46899999999999999
Q ss_pred CCCC-ceeeeEEe-cCceEEEEEccCC--CEEEEEeCCCcEEEEEccC---CeEe--e-eeccCcceeeEEeccCCCeEE
Q 021319 96 ARSG-KCSQQAEL-SGENINITYKPDG--THIAVGNRDDELTILDVRK---FKPI--H-RRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 96 ~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~---~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.... ..++.+.. ...+.++.|.-.| ..+++++.|..|.+--.++ .... . .......+..++..|.-.+.+
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 8533 22333332 3445567776665 6788888887765432221 1111 1 111234577888889999999
Q ss_pred EEcCCceEEEEeCCCCCceeeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
+++.|.+|++|+....+..+.+. .|++..-.+..+|.|.|+|+.+.|.++.++|.-+++|+.+..+|...|+.+.|.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 99999999999999888777765 466778889999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCceEEEEECCC
Q 021319 243 HTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~~ 264 (314)
+|-+.|++++.||.|+||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999998754
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=160.59 Aligned_cols=271 Identities=17% Similarity=0.256 Sum_probs=203.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~ 101 (314)
-|+.++|.|||..|+-+.. ..+.+||.+.+. .-..+++|++.|++++|+.+ +.+++||+.|+.|.+|+..-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~----llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc----cccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc-
Confidence 7999999999988776653 468899987543 23468999999999999987 5799999999999999864221
Q ss_pred eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC
Q 021319 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181 (314)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (314)
.....+...+-+|.|+|-...|++++- ..+-+|.... +.+...+....+.+++|..+|.+++.+..+|++.+-+....
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 223344556678999999888888764 3456776543 23344455667899999999999999999999998765433
Q ss_pred Cceee--eeecccceEEEEECCCC-----CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319 182 RPLDT--VVAHTAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 182 ~~~~~--~~~~~~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
..... .-+.+++|++++|+|+. ..+++.+=..++.+|.++ ++.+..-........|+++.|+|.|+..|+.|
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCC
Confidence 33222 22456789999999974 356666666667777664 44444334456677899999999999999999
Q ss_pred ceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 255 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 255 ~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+.++++. +.|-.+.++.. ...|.+|+.+|++...+.|..| ||+-+|++
T Consensus 244 k~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl 292 (1081)
T KOG1538|consen 244 KQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD--------GTIACYNL 292 (1081)
T ss_pred CceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc--------Ceeehhhh
Confidence 9999995 45555655433 4569999999999999999988 68888876
No 155
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1.4e-18 Score=148.17 Aligned_cols=269 Identities=14% Similarity=0.223 Sum_probs=177.3
Q ss_pred EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-CCcee--eeEEecCce
Q 021319 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCS--QQAELSGEN 111 (314)
Q Consensus 35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~--~~~~~~~~~ 111 (314)
.++...|+.|++|++++. +.........+......++++|++..+.+++..++.|.+|++. ++... .........
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 444577999999999642 2222222222345567789999864334445568999999986 34332 222233455
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEEccCC----eEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCcee
Q 021319 112 INITYKPDGTHIAVGNR-DDELTILDVRKF----KPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD 185 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 185 (314)
..++++|+++.++++.. ++.+.+|++... +.+...........++++|+++.++++. .++.+.+|++.....+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 67999999998887764 788999998642 1222222234466788999998886554 56999999986532221
Q ss_pred e-----ee-ecccceEEEEECCCCCEEEEeeC-CCeEEEeeCCC--c--EEEEEeeecc------cCeEEEEEccCCcEE
Q 021319 186 T-----VV-AHTAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE--M--LCVRTFTKLE------WPVRTISFSHTGDYI 248 (314)
Q Consensus 186 ~-----~~-~~~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~--~--~~~~~~~~~~------~~v~~~~~sp~~~~l 248 (314)
. .. .....+..++|+|++++++++.. ++.|.+||+.. + +.++.+.... .....+.|+|++++|
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 0 11 12345678999999999987776 89999999973 2 3344432211 123468899999999
Q ss_pred EEecC-CceEEEEECCCCC----eEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 249 ASASE-DLFIDISNVHTGR----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 249 ~s~s~-d~~v~v~~~~~~~----~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
+++.. ++.|.+|++.... .+..++.....+.++|+|++++|++++.. .+++.||.++
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-------~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-------SHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-------CCcEEEEEEc
Confidence 98854 6889999985432 22333333456789999999999888753 3677787664
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-20 Score=156.04 Aligned_cols=260 Identities=15% Similarity=0.250 Sum_probs=196.4
Q ss_pred cEEEEEECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 22 KVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 22 ~V~~v~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
.+.+++|+....+ .++.+.|+.+++|.-..+ .+.++..+. .|. .-.|++.... .-++++|+..+.|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAFCVACASQ-SLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccc--hHHHHhhhhc-ceeeeccCcCceeeehhhHHH
Confidence 4999999876643 344467999999975432 233333322 222 2233333222 357899999999999999977
Q ss_pred ceeeeEEe-cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCeEE-EEcCCceEEE
Q 021319 100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFF-LTTGNGTVEV 175 (314)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 175 (314)
.+.+.... ...+..+.++-...+||+++..|.|.+..+.+...-..... +..++-+.|++....++ .++.+|.+.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 77665543 34566788999999999999999999999887654443333 45677889999877655 4578899999
Q ss_pred EeCCCCCceeee-eecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC
Q 021319 176 LTYPSLRPLDTV-VAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 253 (314)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~ 253 (314)
||.....|...+ ..|..+...|+|+|.+ .+|++-+-|..|.+||.+..+....+ .++.|...++|+|+|.+|+.|+.
T Consensus 192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecC
Confidence 999888776554 5799999999999965 57889999999999999876655554 46679999999999999999999
Q ss_pred CceEEEEECCC-CCeEEEEe-ccCccceeEEcCCC
Q 021319 254 DLFIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKY 286 (314)
Q Consensus 254 d~~v~v~~~~~-~~~~~~~~-~~~~i~~v~~~~~~ 286 (314)
.|.|..||++. ..++..+. |...|++|+|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999975 44555544 56789999999875
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=1.5e-17 Score=145.64 Aligned_cols=286 Identities=27% Similarity=0.491 Sum_probs=213.0
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEE-cCCCCCEEEEEeC-CCcE
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV 91 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~~~-D~~v 91 (314)
.+.+|...+..+.+.+.+..++.++.|+.+.+|+..... .....+.++. ..+..+.+ .++....++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 456899999999999999999999999999999986532 1222344433 36777766 6665435555445 9999
Q ss_pred EEEeCCC-CceeeeEEec-CceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEE
Q 021319 92 RLWDARS-GKCSQQAELS-GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 92 ~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (314)
++||... .........+ ..+..+.++|++..++.++. ++.+.+|++.....+.... +...+..++|+|.+..++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9999987 4444444433 34446999999998888875 9999999998866665554 46779999999888844444
Q ss_pred -cCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccC
Q 021319 168 -TGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 168 -~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~ 244 (314)
..++.+.+|+........ .+..|.... ...|+|++..+++++.|+.+++|++..... +..+..|...+.++.|+|+
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC
Confidence 889999999776555555 466777664 448999998999999999999999986654 4444566788999999999
Q ss_pred CcEEEEecCCceEEEEECCCCCeEEEEe---ccCccceeEEcCCCCeeEEEe-cCCcccccccceEEecccc
Q 021319 245 GDYIASASEDLFIDISNVHTGRTVHQIP---CRAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~---~~~~i~~v~~~~~~~~la~~~-~d~~~~~~~~~~~~~~~~~ 312 (314)
+..+++++.|+.+.+|+..+........ +...+..+.|++++..++.++ .| +.+++|.++
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~ 359 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD--------GTIRLWDLR 359 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC--------CcEEeeecC
Confidence 9999999999889999988877665553 344689999943324555553 33 566667664
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=143.81 Aligned_cols=283 Identities=15% Similarity=0.136 Sum_probs=188.2
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
..+++|.+.|+++.|-.++ +|.+|..-|.|++|.+.+.. ....++ -|...|..+...|+ ..+.+-+.|..+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r----~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTER----DLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLI 80 (323)
T ss_pred eEeccccchheehhhccch-hhhcccccceEEEEEeecCc----cchhhhhhccceeeceeecCC--cchhhcCCCceEE
Confidence 3456999999999997665 59999999999999997632 222334 46677888888775 4577899999999
Q ss_pred EEeCCCCceeeeEEecCceEE---EEEccCCCE---EEEE-eCCC-cEEEEEccCCeEeeeecc-----CcceeeEEecc
Q 021319 93 LWDARSGKCSQQAELSGENIN---ITYKPDGTH---IAVG-NRDD-ELTILDVRKFKPIHRRKF-----GYEVNEIAWNM 159 (314)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~---l~~~-~~d~-~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~ 159 (314)
+|++..+..+.....-.+.+. .++.++++. +... ++.. .+.+-|......+..... ...+.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 999987655443322221111 122232221 1111 1110 123333332222211110 11233433322
Q ss_pred -CC--CeEEEEcCCceEEEEeCCCCC----------ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC--cE
Q 021319 160 -TG--EMFFLTTGNGTVEVLTYPSLR----------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE--ML 224 (314)
Q Consensus 160 -~~--~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~--~~ 224 (314)
++ -.++++.++|.+.+|+..... .......|..++.++.+.+.-..=++|+.+..+..|.+.. +.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 22 245677889999999986642 1222346889999999988766677888888899998853 22
Q ss_pred E--EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccccc
Q 021319 225 C--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA 301 (314)
Q Consensus 225 ~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~ 301 (314)
+ ..+...-.-.|..+.+-||++.+|||++|++++||+-.+..++..+. |++.|++|+|+|+.+++|.+|.|
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD------ 314 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD------ 314 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC------
Confidence 1 12222222347889999999999999999999999999999887765 57899999999999999999988
Q ss_pred ccceEEeccc
Q 021319 302 DEGVFRIYGF 311 (314)
Q Consensus 302 ~~~~~~~~~~ 311 (314)
+.|-+|.+
T Consensus 315 --~rISLWkL 322 (323)
T KOG0322|consen 315 --ARISLWKL 322 (323)
T ss_pred --ceEEeeec
Confidence 57778865
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.2e-20 Score=154.38 Aligned_cols=256 Identities=16% Similarity=0.250 Sum_probs=185.0
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC--ceeeeEEecC-ceEEEEEcc
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQAELSG-ENINITYKP 118 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~--~~~~~~~~~~-~~~~~~~~~ 118 (314)
..+++||+...... ...... ...-.+..++|+..+.-.+++.+.|..+++|.-... .+.......+ ...++....
T Consensus 12 d~~kl~D~s~~~~~-~~~~~~-t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETK-SEYVHQ-TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CceEEeecccccCc-cccccC-CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 46899998643211 111111 111238899998654334566677999999965432 2222222222 223444445
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEeeee--ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec-ccceE
Q 021319 119 DGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH-TAGCY 195 (314)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~i~ 195 (314)
...++++|+..+.++|||++. +.+++. .+..++.++.++-.+.+++.....|.+.+-...+......+... ...+.
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred cceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 568899999999999999984 444443 34467889999999999999999999999887766555555422 34566
Q ss_pred EEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccCC-cEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 196 CIAIDPMGRY-FAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 196 ~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
-+.++|..+. |.+++.+|.|++||+.....+. -.+.|..|...|||+|.. .+|++.+.|.+|.+||....+....+.
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence 8999998775 6688999999999997665543 345788999999999975 678899999999999998777767777
Q ss_pred ccCccceeEEcCCCCeeEEEecCCcccc
Q 021319 273 CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 273 ~~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
+..+..+|+|.++|.+|+.|..-+.+|+
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEE
Confidence 7889999999999999998887766654
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.8e-19 Score=140.30 Aligned_cols=246 Identities=16% Similarity=0.254 Sum_probs=187.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.+++|.-+|++++||+||..|+|+|.|.++++||+..+. ....++ -..+|..+.|+|.+.+.++..-.+..-
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rir---f~spv~~~q~hp~k~n~~va~~~~~sp 131 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIR---FDSPVWGAQWHPRKRNKCVATIMEESP 131 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEE---ccCccceeeeccccCCeEEEEEecCCc
Confidence 346789999999999999999999999999999999997543 333333 367899999999887777777777666
Q ss_pred EEEeCCCCceeeeEEec------CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEeccCCCe
Q 021319 92 RLWDARSGKCSQQAELS------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEM 163 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 163 (314)
.+-+...+... .+... ....+..|.+.|+++++|...|.+.++|..+.+.+...+. ...+..+.++..+..
T Consensus 132 ~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 132 VVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF 210 (405)
T ss_pred EEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence 67666543211 11111 1112234889999999999999999999999988765443 357888999999999
Q ss_pred EEEEcCCceEEEEeCCCC---------Cceeeee--ecccceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeee
Q 021319 164 FFLTTGNGTVEVLTYPSL---------RPLDTVV--AHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTK 231 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~---------~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~ 231 (314)
++.-+.|..++.|+.... ++...++ .....-.+++|+.+|.|++.++.. ..+.+|....+..++.+.+
T Consensus 211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 999999999999986521 1111111 122234688999999998877654 4799999999998988887
Q ss_pred cc-cCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 232 LE-WPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 232 ~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
.+ .....+.|+|--..+++- ..|.+++|....
T Consensus 291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 76 467789999999999888 778899998654
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.7e-17 Score=143.10 Aligned_cols=287 Identities=26% Similarity=0.451 Sum_probs=214.3
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeC-CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~-D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
....+.+|...|..++|+|++..+++++. |+.+++|++... .....+.+|...|.++.|+|.+...+++++.|+.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 34667899999999999999999999986 999999998751 1233456799999999999875436666699999
Q ss_pred EEEEeCCCCceee-eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE-eeee-ccCcceeeEEeccCCCeEEEE
Q 021319 91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRR-KFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 91 v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+++||...+.... ....+.......|+|++..+++++.++.+.+|+.+.... .... .+...+..+.+.|.+..++++
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 9999988776655 333332222117899998889999999999999986554 3222 345678888999988888888
Q ss_pred cCCceEEEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 168 TGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
..++.+.+|+........... .|...+..+.+.+++..++.+ ..|+.+.+|++............ ..+..+.+++
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 380 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP- 380 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-
Confidence 777889999776655444443 677778899884332455555 67889999999877622222222 2288899999
Q ss_pred CcEEEE-ecCCceEEEEECCCCCeEEEEecc-CccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 245 GDYIAS-ASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 245 ~~~l~s-~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
...+.+ ++.++.+.+|+............. ..+....+.+++..++.++.+ +++++|+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 442 (466)
T COG2319 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD--------NTIRLWDLK 442 (466)
T ss_pred CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCC--------CcEEEEecc
Confidence 544444 689999999999988777766655 789999999999999886655 577788764
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=9.8e-20 Score=149.99 Aligned_cols=234 Identities=15% Similarity=0.277 Sum_probs=173.6
Q ss_pred EeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCce----eeeEE-ecCceEEEEEccC-CCEEEEEeCCCcEE
Q 021319 61 ELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLWDARSGKC----SQQAE-LSGENINITYKPD-GTHIAVGNRDDELT 133 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~iwd~~~~~~----~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~ 133 (314)
..+-+.+.|++++|+|... .++++|..-|.|-+||++.... +..+. ....+.++.|+|. ...+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 4556888999999999887 7899999999999999963321 11222 2334567889884 56788999999999
Q ss_pred EEEccCCeEeeeecc---CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc-eeeeeecccceEEEEECCCCC-EEEE
Q 021319 134 ILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGR-YFAV 208 (314)
Q Consensus 134 i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~-~l~t 208 (314)
.-|++.......+.. ........++.....++++..-|...+|+++.... ...+..|...|..++++|-.. +|||
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 999986532211111 11234455666667777777778999999876543 445567888999999999765 5899
Q ss_pred eeCCCeEEEeeCCCcEEE----EEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC----CCCCeEEEEeccC-----
Q 021319 209 GSADSLVSLWDISEMLCV----RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV----HTGRTVHQIPCRA----- 275 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~----~~~~~~~~~~~~~----- 275 (314)
++.|++.+|||+++.... .....|...|.+..|||++-.|+|-+.|..|+|||. ..-.++..+.|..
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence 999999999999864322 222368889999999999988999999999999998 3445555665522
Q ss_pred -ccceeEEcCCCCeeEEEec
Q 021319 276 -AMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 276 -~i~~v~~~~~~~~la~~~~ 294 (314)
+....+|.|+.++++.|--
T Consensus 421 lT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred ccchhheeCCCccEEEEecc
Confidence 3567899999999887763
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1e-19 Score=155.65 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=110.8
Q ss_pred EEEEcCCceEEEEeCCC-------CCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319 164 FFLTTGNGTVEVLTYPS-------LRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 235 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (314)
+++++++|.|++|.+.. .++...+..|...|+.+.|+|- .+.|++++.|-+|++||+..++....+.+|...
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence 46788899999998642 3455667889999999999994 578999999999999999999888889999999
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEECCCCCe-EEEEe--ccCccceeEEcCCCCeeEEEecCCc
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~-~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
|..++|||+|+.+||...||.++|++.+++.. +++-+ -..+-..|-|.-++++++..|=|+.
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 99999999999999999999999999887643 33321 1234457788889999988887764
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=148.39 Aligned_cols=205 Identities=23% Similarity=0.425 Sum_probs=159.9
Q ss_pred ecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
.+|+++|.+|.|+..- +.|||||.|++|++||+++.. +...+..|.+.|.++.|+|..+.+|++|+.|++|++.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----cceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 4799999999999875 579999999999999998754 22345679999999999999999999999999999999
Q ss_pred CCC-CceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCC-eEeeeec-cCcceeeEEeccCC-CeEEEEcCC
Q 021319 96 ARS-GKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN 170 (314)
Q Consensus 96 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 170 (314)
.|. +.......+.+.+-.++|.|.. ..+++++.||.++-+|+|+. +++...+ +..++..+.+++.. ..+.+++.+
T Consensus 316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 984 2334456677888889998865 45667889999999999987 7777654 56788888887765 456677889
Q ss_pred ceEEEEeCCCCCceeee--eecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcEE
Q 021319 171 GTVEVLTYPSLRPLDTV--VAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC 225 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~~ 225 (314)
+.+.+|++....+.... ...-+...|.++.|+-. .+|.|+..+.+++||+.+...
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999998765542211 11112356777787654 578899899999999977643
No 165
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=7.6e-18 Score=135.62 Aligned_cols=234 Identities=17% Similarity=0.263 Sum_probs=176.0
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEeCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT--VRLWDAR 97 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~--v~iwd~~ 97 (314)
...++...|+.+...|..|+.|| .++|..++... ..........|-.+-|+. .++|-.+.+.. +++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence 44677788999998888899888 57887765321 101111122344555653 35555555544 8899998
Q ss_pred CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--c--ceeeEEeccCCCeEEEE--cCCc
Q 021319 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--Y--EVNEIAWNMTGEMFFLT--TGNG 171 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~g 171 (314)
.+..+....+...++++.++.+ .|++.-. +.|.|+|++..+.++++... . .+..+..+..+.+++.. ...|
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred cCceEEEEecCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 8877777777888888888755 4555444 34999999999999887643 2 23344444444455544 3579
Q ss_pred eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeecc--cCeEEEEEccCCcEE
Q 021319 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYI 248 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l 248 (314)
.+.+|+....++...+..|.+.+-|++|+++|.+|||++..|+ |||+.+.+++.+.+|.... ..|.+++|+|++++|
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999999999999999999999999999999999999999996 8999999999998887543 357899999999999
Q ss_pred EEecCCceEEEEECCC
Q 021319 249 ASASEDLFIDISNVHT 264 (314)
Q Consensus 249 ~s~s~d~~v~v~~~~~ 264 (314)
++.|..++|+|+.+.+
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998754
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=5.1e-19 Score=143.43 Aligned_cols=229 Identities=21% Similarity=0.383 Sum_probs=167.8
Q ss_pred eeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
....||+++|..++|+|-. +.|||||.|.+|.||.+..+... .-+..++.||...|.-+.|+|.-.++|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3467999999999999976 46999999999999998654322 1234578999999999999999899999999999
Q ss_pred cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-c-CcceeeEEeccCCCeEEEE
Q 021319 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F-GYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 167 (314)
+|.+||+.+|.....+.+...+.++.|+.+|.++++.+.|..|+|||.++.+.+.... + +....-+.|-.++..+-++
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999877776666667899999999999999999999999999998876542 1 3334455677777744444
Q ss_pred c---CCceEEEEeCCCCC-ceeeee-ecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcE----EEEEeeecccCeE
Q 021319 168 T---GNGTVEVLTYPSLR-PLDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML----CVRTFTKLEWPVR 237 (314)
Q Consensus 168 ~---~~g~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~ 237 (314)
. .+.++-+|+..... ++.... ..+.+|.---++++..++. +|-.|+.||.|.+.... .+.+|+- ..+-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-CCccc
Confidence 3 45777888765433 322221 1233444445688887765 45568999999986532 3344432 22445
Q ss_pred EEEEcc
Q 021319 238 TISFSH 243 (314)
Q Consensus 238 ~~~~sp 243 (314)
.+.|.|
T Consensus 314 G~g~mP 319 (472)
T KOG0303|consen 314 GMGFMP 319 (472)
T ss_pred cccccc
Confidence 555555
No 167
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=9.9e-18 Score=134.98 Aligned_cols=232 Identities=16% Similarity=0.266 Sum_probs=170.8
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCc--EEEEEccCCeEe
Q 021319 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDE--LTILDVRKFKPI 143 (314)
Q Consensus 67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~ 143 (314)
..+....|+.+ ..+|..|+.||. +++....-...... .....++.+-|+ ..++|..+.+.. ++++++++...+
T Consensus 6 ~ti~~~~~Nqd-~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQD-STLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccc-eeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34556667755 456767777765 77766543221111 111123334454 446766665444 899999988888
Q ss_pred eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee---ecccceEEEEECCCCCEEEEee--CCCeEEEe
Q 021319 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGS--ADSLVSLW 218 (314)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~t~~--~dg~i~vw 218 (314)
+.+..+.++-+|.++ -+.+++..++. +++|++...+.+.++. .+..++.++++++.+.++|--+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 888877778777764 44555555544 9999999988887764 3455677777777777888443 35889999
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEecc---CccceeEEcCCCCeeEEEec
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCR---AAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~~---~~i~~v~~~~~~~~la~~~~ 294 (314)
|..+.+.+..+..|+.++-+++|+|+|.+|||||+-|+ |+|+.+.+|.++.++.-+ ..|.+++|+|+..+|+..|.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999987 699999999999998642 36899999999999988774
Q ss_pred CCcccccccceEEeccccC
Q 021319 295 DKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~ 313 (314)
- +|+-||-+++
T Consensus 239 T--------eTVHiFKL~~ 249 (391)
T KOG2110|consen 239 T--------ETVHIFKLEK 249 (391)
T ss_pred C--------CeEEEEEecc
Confidence 4 6888887754
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=2.5e-18 Score=139.80 Aligned_cols=287 Identities=16% Similarity=0.244 Sum_probs=191.1
Q ss_pred cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCc----ee-eEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----VK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~----~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
..+|.++.|.+.+. .|+|||.|..||||.++...... +. .-.+..|..+|+++.|+|. +++++||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 45899999998876 99999999999999986533221 11 1246789999999999997 479999999999999
Q ss_pred EeCC--------C-----C-ceeeeEE---ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeE
Q 021319 94 WDAR--------S-----G-KCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEI 155 (314)
Q Consensus 94 wd~~--------~-----~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 155 (314)
|-.. + . ....... +..++..++|+|++.++++++.|..+.+||+..++..... .+..-+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9654 1 0 0111111 2245567899999999999999999999999998876553 445567788
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCceee-----e---ee-----------ccc----ceEEEEECCCCCEEEEeeC-
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-----V---VA-----------HTA----GCYCIAIDPMGRYFAVGSA- 211 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~---~~-----------~~~----~i~~i~~~~~~~~l~t~~~- 211 (314)
+|.|...+++.-+.+...+.+.....+.+.. + .. |.. --..++|+|+|..+++.+.
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9998888877776666444444321111000 0 00 111 1235688999999887642
Q ss_pred ---CCe-----EEEeeCCCcE-EEEEeeecccCeEEEEEcc------------------CCcEEEEecCCceEEEEECCC
Q 021319 212 ---DSL-----VSLWDISEML-CVRTFTKLEWPVRTISFSH------------------TGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 212 ---dg~-----i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp------------------~~~~l~s~s~d~~v~v~~~~~ 264 (314)
.+. ..+|+-...+ ....+....-++..+.|+| -.-.+|.|+.+ .|.+||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccc
Confidence 122 2333322111 1122222333444455544 23446666666 499999999
Q ss_pred CCeEEEEe--ccCccceeEEcCCCCeeEEEecCCc--ccccccceEEe
Q 021319 265 GRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN--KYQADEGVFRI 308 (314)
Q Consensus 265 ~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~--~~~~~~~~~~~ 308 (314)
..++.... |-.+|+.++|+++|..|+..|.|+- ..++|..|+.|
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg~ 378 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELGI 378 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhccc
Confidence 88876654 3568999999999999999999873 33455555543
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-18 Score=156.74 Aligned_cols=283 Identities=18% Similarity=0.262 Sum_probs=197.3
Q ss_pred ecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeec---CCCCEEEEEEc-CCCCCEEEEEeCCCcEE
Q 021319 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWD-PKHADLIATASGDKTVR 92 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~---h~~~v~~l~~~-~~~~~~l~s~~~D~~v~ 92 (314)
++....-..+.|+|=..++++++..-.|+|||.+.... . ..+.. ....|.++.+. ..+..++++|+.||.||
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~---l-~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL---L-NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCce---e-ccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 34444567788999889999999888999999865321 1 11111 22347777764 33456889999999999
Q ss_pred EEeCC-CC----ceeeeE-Ee-------cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--eeeEEe
Q 021319 93 LWDAR-SG----KCSQQA-EL-------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAW 157 (314)
Q Consensus 93 iwd~~-~~----~~~~~~-~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~ 157 (314)
||+-- .+ +.+... .+ .+...-+.|.....+|++++.-..|+|||..+.+....+..+.. +..+.-
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 99632 21 111100 11 11223366777777888887788999999998877766554433 233222
Q ss_pred -ccCCCeEEEEcCCceEEEEeCCCC---Cceeeeeecccc--eEEEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEEEe-
Q 021319 158 -NMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAG--CYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTF- 229 (314)
Q Consensus 158 -~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~--i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~- 229 (314)
...|+.+++|..||.+++||.+.. ..+.....|... |..+.+.+.|-. |++|+.||.|++||++.......+
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 234789999999999999997532 245556677766 999999987755 999999999999999864222111
Q ss_pred -eec---ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec--------cCccceeEEcCCCCeeEEEecCCc
Q 021319 230 -TKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--------RAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 230 -~~~---~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
..+ ....+++..++....+|+|+. ..|.||++. |+.+..+.. .+++.+++|||...+||.|+.|
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D-- 1372 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD-- 1372 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC--
Confidence 111 225889999999999999999 999999985 344433321 3578999999999999988766
Q ss_pred ccccccceEEeccccC
Q 021319 298 KYQADEGVFRIYGFEN 313 (314)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (314)
.++.||+-++
T Consensus 1373 ------s~V~iYs~~k 1382 (1387)
T KOG1517|consen 1373 ------STVSIYSCEK 1382 (1387)
T ss_pred ------ceEEEeecCC
Confidence 5899998765
No 170
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=3.3e-17 Score=129.57 Aligned_cols=270 Identities=15% Similarity=0.270 Sum_probs=183.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEE-EEeCC------CcEEEE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA-TASGD------KTVRLW 94 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~D------~~v~iw 94 (314)
...+++|+.|...++.|..+| .|||++++............| -.+..+-| ..++++ .||.. ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G--~~~veMLf---R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG--FKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc--hhhhhHhh---hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999988887665 899999864321111111111 11222222 123443 33333 578999
Q ss_pred eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeEeeeeccC---cceeeEEeccCCCeEEEE-cC
Q 021319 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFG---YEVNEIAWNMTGEMFFLT-TG 169 (314)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 169 (314)
|-...+++.++.+..++.++.+.++. +++. ..+.|.+|... +.+.++.++.- ....++.-+.....++.. ..
T Consensus 81 DD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred ecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 97778888888899999999988773 4333 34689999876 55655554432 223333333333344433 34
Q ss_pred CceEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeec--ccCeEEEEEccC
Q 021319 170 NGTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKL--EWPVRTISFSHT 244 (314)
Q Consensus 170 ~g~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp~ 244 (314)
-|.+.+.++...++ -..+..|...|.|++++.+|.++||++..|+ |||||..++..++++... ...+.+++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 59999999866554 3567899999999999999999999999996 999999999999888653 457999999999
Q ss_pred CcEEEEecCCceEEEEECCCCC---e-------EE-EE-------------e-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 245 GDYIASASEDLFIDISNVHTGR---T-------VH-QI-------------P-CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~---~-------~~-~~-------------~-~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
..+||.+|.-|+++|+.++... . .+ .+ . ..++..-++|-.+.+.++..+.|+..|
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 9999999999999999876422 1 00 01 0 123455678887756666677777766
Q ss_pred c
Q 021319 300 Q 300 (314)
Q Consensus 300 ~ 300 (314)
.
T Consensus 318 k 318 (346)
T KOG2111|consen 318 K 318 (346)
T ss_pred E
Confidence 4
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.9e-18 Score=140.52 Aligned_cols=253 Identities=19% Similarity=0.309 Sum_probs=174.9
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC------C------CCCceeeEEeecCCCCEEEEEEcCCCC
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------H------GHGKVKDIELRGHADSVDQLCWDPKHA 79 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~------~------~~~~~~~~~~~~h~~~v~~l~~~~~~~ 79 (314)
+.-.|.+|..+|++|.|+|+|+.|+||+.+|.|.+|.... . ...+.....+.+|...|..++|+|++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~- 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS- 135 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-
Confidence 4456789999999999999999999999999999997651 0 11234455688999999999999975
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-----------
Q 021319 80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----------- 147 (314)
Q Consensus 80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------- 147 (314)
.++++++.|.++++||+..|........+... .-++|.|-++++++-+.|.....+++...+.++...
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 68999999999999999999887776544443 358899999999988888766666654433322211
Q ss_pred ---------cC----cceeeEEeccCCCeEEEEcC----Cce-----EEEEeCCC-CCceeeeeecccceEEEEE-----
Q 021319 148 ---------FG----YEVNEIAWNMTGEMFFLTTG----NGT-----VEVLTYPS-LRPLDTVVAHTAGCYCIAI----- 199 (314)
Q Consensus 148 ---------~~----~~~~~~~~~~~~~~~~~~~~----~g~-----~~~~~~~~-~~~~~~~~~~~~~i~~i~~----- 199 (314)
+. .-..-+.|+|+|..++.... .+. .++++-.. .+|...+.+-......+.+
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 00 01234678899988876543 222 23333221 1233222222222222222
Q ss_pred -------------CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-cccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319 200 -------------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 265 (314)
Q Consensus 200 -------------~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~ 265 (314)
-|.+..+|.++.+ .|.+||..+...+....+ |=.+++.++|+++|.+|+..|.||.+.+-..+..
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 2445567777665 599999987655544433 3457999999999999999999999888877654
Q ss_pred C
Q 021319 266 R 266 (314)
Q Consensus 266 ~ 266 (314)
+
T Consensus 375 e 375 (434)
T KOG1009|consen 375 E 375 (434)
T ss_pred h
Confidence 4
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=5.8e-19 Score=151.95 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=180.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
..+.+.||++.|+||+|+.||++++||+.|+.|.+|...-.+ +. ++ .|.+.|.|+.|+|-. ..++|++-. ..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L--kY-SH~D~IQCMsFNP~~-h~LasCsLs-dF 116 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL--KY-SHNDAIQCMSFNPIT-HQLASCSLS-DF 116 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee--ee-ccCCeeeEeecCchH-HHhhhcchh-hc
Confidence 456789999999999999999999999999999999754321 11 22 599999999999974 577777653 45
Q ss_pred EEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec----cCcceeeEEeccCC-----C
Q 021319 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNMTG-----E 162 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~-----~ 162 (314)
-+|......+ ..........+++|..||.+++.|..+|+|.+-+-. .++...++ ...++.+++|+|.. +
T Consensus 117 glWS~~qK~V-~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 117 GLWSPEQKSV-SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred cccChhhhhH-HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence 6787654432 222334566789999999999999999999997632 22222222 23578899998863 4
Q ss_pred eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
.+++..-+.++.++.+... .+..-..-+-.+.|+..-++|.++..|+.|+.+++|- +++-.+.++...+.-|..++..
T Consensus 195 i~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred eEEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 5666666777777766432 1111112233567999999999999999999999997 5676777776677789999999
Q ss_pred cCCcEEEEecCCceEEEEECC
Q 021319 243 HTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 243 p~~~~l~s~s~d~~v~v~~~~ 263 (314)
|++++++.|-.||++-.++..
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999888764
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.1e-19 Score=144.12 Aligned_cols=198 Identities=21% Similarity=0.340 Sum_probs=142.9
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (314)
Q Consensus 24 ~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~ 103 (314)
.+++|+++|..+++++.||++|||+...- ........|...|.+|.|+|++ .+|++-+.| ..+||+.+++.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhh
Confidence 68999999999999999999999996431 2234566899999999999985 699999999 99999999997665
Q ss_pred eEEecCc---eEEEEEccCC---CEEE--EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319 104 QAELSGE---NINITYKPDG---THIA--VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 104 ~~~~~~~---~~~~~~~~~~---~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
.....+. ...|.|..|+ .+.+ .-...+.+..+|+. +
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------------------------------------~ 265 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------------------------------------L 265 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee------------------------------------e
Confidence 5432222 2246666554 2111 11222223333321 1
Q ss_pred EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEccCCcEEEEecCC
Q 021319 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
|+....-+..+...-...|++++++++|+++|.|+.||.|.+++..++++++-.+ .|...|+.+.|+|+.+++++.|.|
T Consensus 266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred eccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence 2211111111222223469999999999999999999999999999998887664 477789999999999999999999
Q ss_pred ceEEEEECC
Q 021319 255 LFIDISNVH 263 (314)
Q Consensus 255 ~~v~v~~~~ 263 (314)
....|..+.
T Consensus 346 ~~~~v~~l~ 354 (398)
T KOG0771|consen 346 NEAAVTKLA 354 (398)
T ss_pred CceeEEEEe
Confidence 888887654
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=5.6e-19 Score=149.09 Aligned_cols=248 Identities=12% Similarity=0.179 Sum_probs=173.9
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCC---CC-CCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~---~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
++..|.+.|+.++|.|....|++|+.|+++++|+++. .. ....+.+.+.+|.++|.|+++.++ ++.+.+|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCce
Confidence 6778999999999999999999999999999999932 11 112345678999999999999876 578999999999
Q ss_pred EEEEeCCCCc----------eeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE--eee-eccCcceeeEE
Q 021319 91 VRLWDARSGK----------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHR-RKFGYEVNEIA 156 (314)
Q Consensus 91 v~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~-~~~~~~~~~~~ 156 (314)
|+.|++.... ....+ ........+++++....|++++.||+++.|+.....+ ... .+.+.+ ..+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P-lsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP-LSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc-ceEe
Confidence 9999654211 01111 1233444688888888899999999999999876655 111 111211 1222
Q ss_pred eccCC-CeEEEEcCCceEEEEeCCCCCceeeeee-------cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319 157 WNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVA-------HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (314)
Q Consensus 157 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~ 228 (314)
+.... ...++....+.-.+++......+..+.. -...+.-+..+|++...+++-.|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 21111 1111111112222222222222221111 112356778899999999999999999999999999998
Q ss_pred eeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 229 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 229 ~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
...|...++++++.|+|.+|++++.|+.+++|....
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 889999999999999999999999999999998744
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.7e-17 Score=145.69 Aligned_cols=285 Identities=16% Similarity=0.207 Sum_probs=204.1
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
.|.-.++++++||.++++++|..||.|.+|.--.-.........+.=|.++|.+++|++++ .+|+||+.++-+-+|-..
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeec
Confidence 4666799999999999999999999999995321011222334566789999999999986 588899999999999999
Q ss_pred CCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee---eccC---------cceeeEEeccCCCeEE
Q 021319 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---RKFG---------YEVNEIAWNMTGEMFF 165 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~ 165 (314)
+++......+.+.+..+.++||+...++...|..|.+..+.+...... ++.. .-...+..+|.-+.++
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 988666666788888999999999999999999999987644322111 1111 1234566778778888
Q ss_pred EEcCCceEEEEeCCCCCceeeeee-----------cccceEEEEECCCCCEEEEeeC--------C--CeEEEeeCCCc-
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVA-----------HTAGCYCIAIDPMGRYFAVGSA--------D--SLVSLWDISEM- 223 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~t~~~--------d--g~i~vwd~~~~- 223 (314)
..+..|.+.+|++.+.+.+..+.. +.-.+++++.+-.|.+++|... | -.+++|.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 889999999999876654444321 2224677778888999998732 3 25888976533
Q ss_pred --EEEEE--eeecccCeEEEEEc-cCCc-EEEEecCCceEEEEECCCC------------CeEEEEeccCccceeEEcCC
Q 021319 224 --LCVRT--FTKLEWPVRTISFS-HTGD-YIASASEDLFIDISNVHTG------------RTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 224 --~~~~~--~~~~~~~v~~~~~s-p~~~-~l~s~s~d~~v~v~~~~~~------------~~~~~~~~~~~i~~v~~~~~ 285 (314)
..+.+ ...|+..+...+|. |... ..+|+|.||.+++|-...- +.+..+ ++.++++.+|+.|
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCC
Confidence 22222 23466555555554 3333 8999999999999987221 112222 3668999999999
Q ss_pred CCeeEEEecCCcccccccceEEeccccC
Q 021319 286 YNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 286 ~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|.+||.+=+ +++.|||..+
T Consensus 521 Gslla~s~~---------~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLLAVSFD---------DTITIWDYDT 539 (792)
T ss_pred CcEEEEecC---------CEEEEecCCC
Confidence 988875553 4899999854
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=6.6e-17 Score=137.96 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=167.2
Q ss_pred ccccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
+.+....++++|++++|+.++ .++.|.+|+++.. +................++++|++..++++.-.++.|.+|++.
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~--g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD--GALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC--CceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 345677899999999886654 5889999998632 1221111111233456799999865444444458999999986
Q ss_pred C-Cce---eeeEEecCceEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEee-------eeccCcceeeEEeccCCCeEE
Q 021319 98 S-GKC---SQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIH-------RRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 98 ~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 165 (314)
. +.. ............++++|++++++++ ..++.|.+||+.+...+. ....+.....++|+|+++.++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 3 322 1211122334567899999988655 456899999997632221 122344567889999999988
Q ss_pred EEcC-CceEEEEeCCCC----Cceeeeeec------ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCCcE----EEEEe
Q 021319 166 LTTG-NGTVEVLTYPSL----RPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEML----CVRTF 229 (314)
Q Consensus 166 ~~~~-~g~~~~~~~~~~----~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~~~----~~~~~ 229 (314)
+... ++.+.+|++... +.+..+..+ ......+.++|++++++++.. ++.|.+|++.... .+...
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 8776 899999998632 222222211 112346889999999988865 6899999985321 22222
Q ss_pred eecccCeEEEEEccCCcEEEEecC-CceEEEEECC--CCCe--EEEEeccCccceeEE
Q 021319 230 TKLEWPVRTISFSHTGDYIASASE-DLFIDISNVH--TGRT--VHQIPCRAAMNSVEW 282 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~--~~~~--~~~~~~~~~i~~v~~ 282 (314)
.. ......++|+|+|++|+++.. ++.|.+|+.. ++.. +..+......++++|
T Consensus 271 ~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 271 PT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 22 223567899999999998875 8899999874 4432 222333334455554
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.5e-19 Score=149.13 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=158.7
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCC------CceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 86 (314)
+-++.+|.++|.|++..+.++.+.|||.||+||.|++..... ..+..-.+.||.+.|..+++++.. +.|++++
T Consensus 337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs 415 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCS 415 (577)
T ss_pred eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeec
Confidence 356789999999999999999999999999999997752111 112334678999999999999874 5788999
Q ss_pred CCCcEEEEeCCCCcee--eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeec--------cCcceeeE
Q 021319 87 GDKTVRLWDARSGKCS--QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEI 155 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~ 155 (314)
.||++|.|+....... ....-.+-...+.+.... ...++...-+.-.+.++.....+.... ....+..+
T Consensus 416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 9999999998665441 111112223344433222 122222222222333333222221111 11346778
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 232 (314)
.++|.....+.+.+++.+++++.....++.....|...++++++.|+|-+|++++.|+.+++|.+....|++....|
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999877777665444
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1e-17 Score=147.48 Aligned_cols=235 Identities=19% Similarity=0.255 Sum_probs=159.6
Q ss_pred CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEc
Q 021319 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK 117 (314)
Q Consensus 41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 117 (314)
+..|.+||.+... . ..+..|...+....|+|++ +.|+..+.+ ..|.+||+.+++........+.....+|+
T Consensus 183 ~~~i~i~d~dg~~---~--~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN---Q--FIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC---c--eEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 5789999876422 1 2356788889999999986 456655543 47999999887654433344444568999
Q ss_pred cCCCEEEEEe-CCCcEEEE--EccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCceeeeeecccc
Q 021319 118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAG 193 (314)
Q Consensus 118 ~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 193 (314)
|||+.|+.+. .++...+| |+...+...-...........|+|+++.+++.. .+|...+|.+...........+..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 9999988764 57766555 555444322222334567889999999776554 567777776543211112223332
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC--CCCCeEEEE
Q 021319 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV--HTGRTVHQI 271 (314)
Q Consensus 194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~--~~~~~~~~~ 271 (314)
+..+|+|+|+.++..+.++ +.+||+.++........ ......+|+|+|++|+.++.++...+|.+ .+|+.++.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 4678999999998887766 55699987765432222 23356789999999999999998888875 367777777
Q ss_pred ec-cCccceeEEcCCC
Q 021319 272 PC-RAAMNSVEWNPKY 286 (314)
Q Consensus 272 ~~-~~~i~~v~~~~~~ 286 (314)
.. .+.+...+|||-.
T Consensus 412 ~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 PGSDGQVKFPAWSPYL 427 (429)
T ss_pred cCCCCCCCCcccCCCC
Confidence 53 5678999999853
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=159.52 Aligned_cols=271 Identities=18% Similarity=0.272 Sum_probs=197.5
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
++.+.||.++|+|+.|...|.++++|+.|..|+||.+++.. .-..++||++.|+.++.+.. +.+++++|.|.-|+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence 46678999999999999999999999999999999976532 23357899999999998764 56889999999999
Q ss_pred EEeCCCCceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee------eccCcceeeEEeccCCCeEE
Q 021319 93 LWDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------RKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 93 iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 165 (314)
+|-+..+..+..+ ...+.+.+++|+|-. +.+.||++.+||.+ ..++.. ...+.-+..+.+...+..++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc
Confidence 9999988765443 346677889999864 77889999999987 111110 01112234445555666677
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
++..++....|...... .+.....-+..+.+ ..+.+++=.+-.+.+|++.+++.++.+.+|...+..+.++|-
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 77777766555443211 11111100111111 135556666778999999999888888899999999999998
Q ss_pred CcEEE-EecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 245 GDYIA-SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 245 ~~~l~-s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
+..++ +++.||...|||...|.+++.+. .+..+..-+||++|..++...+-+-+|
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~ 463 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLY 463 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceE
Confidence 76554 89999999999999998887653 356788889999999988666554444
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.9e-19 Score=145.56 Aligned_cols=286 Identities=22% Similarity=0.269 Sum_probs=210.8
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~ 92 (314)
..|.+|.+-|+.|.|+..|..|+|||.|..|.+||..... .... -..||...|....|.|..+ .-+++++.||.++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~-f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLS-FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccc-cccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4578999999999999999999999999999999986532 1111 2358999999999988643 4578999999999
Q ss_pred EEeCC-CCcee---eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeee----eccC---cceeeEEeccC
Q 021319 93 LWDAR-SGKCS---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR----RKFG---YEVNEIAWNMT 160 (314)
Q Consensus 93 iwd~~-~~~~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~---~~~~~~~~~~~ 160 (314)
+=.+. ++.+. ....+.+.+-.++..|+. ..+.+++.|+.+.-+|++...+-.. .... .....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87653 33333 223445666677777765 4567888999999999987544221 1111 24567777887
Q ss_pred CC-eEEEEcCCceEEEEeCCCCCc------eeeee------ecccceEEEEECCCCCEEEEeeCCCeEEEeeCC--Cc--
Q 021319 161 GE-MFFLTTGNGTVEVLTYPSLRP------LDTVV------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EM-- 223 (314)
Q Consensus 161 ~~-~~~~~~~~g~~~~~~~~~~~~------~~~~~------~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~--~~-- 223 (314)
.. .+++++.+..+++|+.+.... +..+- .....|+|++++.++.-+.++-.|-.|.++.-. .+
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 65 788888999999998754321 22221 223468999999888877778888889999532 22
Q ss_pred --------EEEEE-eeeccc--CeEEEEE-ccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeE
Q 021319 224 --------LCVRT-FTKLEW--PVRTISF-SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 224 --------~~~~~-~~~~~~--~v~~~~~-sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la 290 (314)
..++. +++|.. .|..+-| -|...|++|||.-|.|++|+-++++.++.+.. +.-|||+.=||..+.||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 22333 677753 4666665 48999999999999999999999998877654 33799999999999999
Q ss_pred EEecCCcccccccceEEecc
Q 021319 291 YAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 291 ~~~~d~~~~~~~~~~~~~~~ 310 (314)
+.|-|.. ||||-
T Consensus 453 sSGid~D--------VKIWT 464 (559)
T KOG1334|consen 453 SSGIDHD--------VKIWT 464 (559)
T ss_pred ccCCccc--------eeeec
Confidence 9999864 77774
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=3.9e-17 Score=143.78 Aligned_cols=259 Identities=19% Similarity=0.265 Sum_probs=183.5
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee-------eeEEecCceEEE
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-------QQAELSGENINI 114 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------~~~~~~~~~~~~ 114 (314)
+.+.||++.... .+...+ .....|.++.|+|.++++++.|..+|.|-+||++.+... ....+......+
T Consensus 222 ~~~~vW~~~~p~---~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPN---TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCC---CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 468899987542 223333 346779999999999999999999999999999876541 112233445566
Q ss_pred EEccC--CCEEEEEeCCCcEEEEEccCCeE-eee-----e-------ccCcceeeEEeccCC-CeEEEEcCCceEEEEeC
Q 021319 115 TYKPD--GTHIAVGNRDDELTILDVRKFKP-IHR-----R-------KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTY 178 (314)
Q Consensus 115 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~-~~~-----~-------~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 178 (314)
.|..+ +.-+++++.||.|..|+++.... ... . .....+..++|.+.. ..|++|++.|.+.....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 66543 34588888999999999876432 111 1 112345677787654 67889999999988544
Q ss_pred CCCC--------ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeecccCeEEEEEccCC-cEE
Q 021319 179 PSLR--------PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTG-DYI 248 (314)
Q Consensus 179 ~~~~--------~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~sp~~-~~l 248 (314)
...+ +...+..|.+.++++.++|-+..++..+.|.++++|... ....+..+......|.+++|||.- ..+
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 3322 233556788999999999977665555559999999987 555555555555569999999976 567
Q ss_pred EEecCCceEEEEECCC--CCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 249 ASASEDLFIDISNVHT--GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 249 ~s~s~d~~v~v~~~~~--~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
|++..||.+.+||+.. .++....+ +....+.+.|++.+++||.|... |.+.+|.+.
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~~l~ 516 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHILKLS 516 (555)
T ss_pred EEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEEEcC
Confidence 7888899999999864 34443332 24457788999999999988855 677788774
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=3.3e-17 Score=144.21 Aligned_cols=246 Identities=16% Similarity=0.193 Sum_probs=179.6
Q ss_pred ccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCC--CceeeEEeecCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEE
Q 021319 19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH--GKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW 94 (314)
Q Consensus 19 H~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~D~~v~iw 94 (314)
-...|.+++|+|.. ++++.|.++|.|-+||+..+.. ..........|..++.++.|..+.. .-++|++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 36789999999975 5677778999999999976543 1223334567999999999975432 347899999999999
Q ss_pred eCCCCceeee------E-------EecCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeE--------e-eeeccCcc
Q 021319 95 DARSGKCSQQ------A-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKP--------I-HRRKFGYE 151 (314)
Q Consensus 95 d~~~~~~~~~------~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--------~-~~~~~~~~ 151 (314)
+++.-..... . .......++.|.+ +...+++|+..|.|.--+-...++ + ....+...
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764332110 0 1112334577766 456788899888876633222111 1 11234567
Q ss_pred eeeEEeccCCCeEEEEcCCceEEEEeCC-CCCceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCcE--EEE
Q 021319 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML--CVR 227 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~~--~~~ 227 (314)
+..+.++|-+..++.++.|-++++|... ...|+..+..+...+++++|||... .||++..||.+.+||+.... .+.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 8999999999888888889999999987 6778877777777899999999874 68889999999999996432 233
Q ss_pred EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
+.+........+.|++.|+.|+.|...|.++++++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3333345567788999999999999999999999854
No 183
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=4.8e-18 Score=145.43 Aligned_cols=258 Identities=18% Similarity=0.268 Sum_probs=163.5
Q ss_pred EEECCC---CCEEEEeeCCCcEEEeecCCCCCC--ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 021319 26 VAWNCT---GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (314)
Q Consensus 26 v~~s~~---g~~l~s~~~D~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 100 (314)
+.|++- .+.|+.+..||.|.++|....... +........|.++|.++.|.| +...|++++.|.+++.||+..++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence 556543 356888999999999998643211 111234568999999999999 56789999999999999999888
Q ss_pred eeee---EEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 101 CSQQ---AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 101 ~~~~---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
+... +.+....-+++|.|.. ..+++|+.|+.+.|||++....-...+.. +. + .+..++. . -
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~---~~---------~-~~~~n~~-p-t 198 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD---NR---------I-YGRHNTA-P-T 198 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh---hh---------h-hccccCC-C-C
Confidence 7654 2233445568888755 46678999999999999864311100000 00 0 0000000 0 0
Q ss_pred eC-CCCCceeeeeecccceEE---EEECCCCCEEEEeeC-CCeEEEeeCCCcEEEEE--------eeec---ccCeEEEE
Q 021319 177 TY-PSLRPLDTVVAHTAGCYC---IAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRT--------FTKL---EWPVRTIS 240 (314)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~i~~---i~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~~~~ 240 (314)
.. +..+.......+...|.. +.+..|...||+++. |+.|+|||+++..+... +..+ ...+.++.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 00 000111122234444444 555678889998888 99999999987654322 1112 22466777
Q ss_pred EccCCcEEEEecCCceEEEEECCCCC--eEEEEec--cCccc-eeEEcCCCCeeEEEecCCccc
Q 021319 241 FSHTGDYIASASEDLFIDISNVHTGR--TVHQIPC--RAAMN-SVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~~v~v~~~~~~~--~~~~~~~--~~~i~-~v~~~~~~~~la~~~~d~~~~ 299 (314)
....|.+|+..-.|+.|+.|++..-. ++..+.+ ..+.+ .=..+|++.+|++|+.|..-|
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ay 342 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAY 342 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCccee
Confidence 77778888877779999999987532 2222221 11111 235679999999999998777
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=4e-17 Score=127.59 Aligned_cols=261 Identities=15% Similarity=0.257 Sum_probs=186.1
Q ss_pred EEEEee----CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-------CcEEEEeCCCCc--
Q 021319 34 KLASGS----VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------KTVRLWDARSGK-- 100 (314)
Q Consensus 34 ~l~s~~----~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-------~~v~iwd~~~~~-- 100 (314)
.|++|- .|+.|.+-+++... +.+....+..|.+.|..++-+|.+..+|+++-.| -.+-||.+....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~-s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEG-SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred EEEEeccccCCcceeEEEEecCcc-chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 455553 47888888887644 3445556777889999999999988888887663 235689875332
Q ss_pred -------eeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-eeecc------CcceeeEEeccCC-Ce
Q 021319 101 -------CSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKF------GYEVNEIAWNMTG-EM 163 (314)
Q Consensus 101 -------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~------~~~~~~~~~~~~~-~~ 163 (314)
++..+. ..+.+.++.|.|++..+++-. |..|.+|++.....+ ..... .....+-+|+|.. -.
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 111111 124556789999999988775 889999999776542 11111 1234566788833 23
Q ss_pred EEEEcCCceEEEEeCCCCCceeee-eecccceEEEEECCCCCE-EEEeeCCCeEEEeeCCCc-EEEEEeeecccCeEEEE
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 240 (314)
.+....++++..|+.++......+ ..|...+..++|+|+.++ ||+|+.||.|++||.+.. ..++++.+|..-|.++.
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 344567899999999877655544 478888999999999875 889999999999999865 45788999999999999
Q ss_pred EccC-CcEEEEecCCceEEEEECCCCC------------------------eE-----EEE-eccCccceeEEcCCCCe-
Q 021319 241 FSHT-GDYIASASEDLFIDISNVHTGR------------------------TV-----HQI-PCRAAMNSVEWNPKYNL- 288 (314)
Q Consensus 241 ~sp~-~~~l~s~s~d~~v~v~~~~~~~------------------------~~-----~~~-~~~~~i~~v~~~~~~~~- 288 (314)
|+|. .++++|||.|..|.+|-...-. ++ ..+ .|..+|++++|+.-.+.
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 9997 5678899999999998653210 11 111 14568999999976655
Q ss_pred eEEEecCC
Q 021319 289 LAYAGDDK 296 (314)
Q Consensus 289 la~~~~d~ 296 (314)
||+=+-|+
T Consensus 346 FASLSYDG 353 (370)
T KOG1007|consen 346 FASLSYDG 353 (370)
T ss_pred EEEeccCc
Confidence 46666664
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=9.7e-18 Score=141.06 Aligned_cols=260 Identities=13% Similarity=0.151 Sum_probs=179.3
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee----EEeecCCCCEEEEEEc-CCCCCEEEEEeCCCcEE
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----IELRGHADSVDQLCWD-PKHADLIATASGDKTVR 92 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~l~~~-~~~~~~l~s~~~D~~v~ 92 (314)
.|...|.||.|+.....+.+++.+..++-|++.+........ ....-|. ....-- ..+.+.++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~---~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHL---GGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccc---cccccCCCCCcceEEEEcCCceEE
Confidence 577788899999877777777766666666664322111000 0001121 111100 11245788899999999
Q ss_pred EEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCC
Q 021319 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
|-+- .+++.+... +.+...+-.|+|||.-|++.+.||.|++|.-. +-.... .+...++.+++|.|+.+.++.+. .
T Consensus 89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 8875 355444433 23445677899999999999999999999832 211111 34566899999999988776654 4
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
+.+.+-.+.....+.....|.+-|.+++|++..+.+++|+.|-..++||- .+..+.+-..|+.+|++++|+|+ ..++.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceee
Confidence 56666666555555667889999999999999999999999999999995 56666666789999999999999 55544
Q ss_pred ecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 251 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+|.. +.+ ..-+..++|..++|||||..++.|...+
T Consensus 244 ~S~n---------t~R--~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 244 WSYN---------TAR--FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeee---------eee--ecCCCccceEEEEEcCCCceeeccccCc
Confidence 4433 211 2223457899999999999988776554
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.6e-17 Score=131.32 Aligned_cols=267 Identities=16% Similarity=0.202 Sum_probs=182.8
Q ss_pred CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-CCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc-
Q 021319 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGE- 110 (314)
Q Consensus 33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~- 110 (314)
..+|++-+.|+||+||..+.. ...++++|...++.+.|... .+..+.||+.||+||+||+|.............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 458888889999999987632 22367889999999988654 567899999999999999998765544433322
Q ss_pred ---eEEEEEccCCCEEEEEeC----CCcEEEEEccCCeE-eeee--ccCcceeeEEeccCC-CeEEEEcCCceEEEEeCC
Q 021319 111 ---NINITYKPDGTHIAVGNR----DDELTILDVRKFKP-IHRR--KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP 179 (314)
Q Consensus 111 ---~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 179 (314)
.++++..-.++.+++|+. +-.+.+||+|..+. +..+ .+.-.+.++.|+|.. +.+++++.||-+.+|+..
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 234444446778888764 45689999998776 4333 244578999999976 677788899999999986
Q ss_pred CCC---ceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc---------CeEE-E-EEcc-
Q 021319 180 SLR---PLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW---------PVRT-I-SFSH- 243 (314)
Q Consensus 180 ~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---------~v~~-~-~~sp- 243 (314)
... ++.....|...|-++.|..++ +.+.+-+..++..+|+++.+.+...++.... .+.. | +.+|
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 432 344445677889999998877 3467778899999999988765544432210 1100 1 1234
Q ss_pred CCcEEEEecCC-ceE--EEE-ECCCCCeEE---EEe--ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 244 TGDYIASASED-LFI--DIS-NVHTGRTVH---QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 244 ~~~~l~s~s~d-~~v--~v~-~~~~~~~~~---~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+....+.++.| +.. ... ++.++..+. .+. +..-|+++.|.-.+.++.|||+| |-+++|-.
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED--------G~l~~Wk~ 345 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED--------GLLQAWKV 345 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC--------ceEEEEec
Confidence 34566666653 333 322 223333322 222 23458999999889999999977 68888864
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.7e-17 Score=129.75 Aligned_cols=239 Identities=19% Similarity=0.267 Sum_probs=169.0
Q ss_pred ecccccEEEEEECCCCC-----EEEEeeCCCcEEEeecCCCCCCceeeEE-----eecCCCCEEEEEEcCCCCCEEEEEe
Q 021319 17 TGHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIE-----LRGHADSVDQLCWDPKHADLIATAS 86 (314)
Q Consensus 17 ~gH~~~V~~v~~s~~g~-----~l~s~~~D~~v~iw~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~l~s~~ 86 (314)
..|.-+++.+.|.|+.. +|||+| ..+|+|.+............ -..+..++++..|+.-+.++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46888999999999873 566665 47999998743322111111 2235678999999988889999999
Q ss_pred CCCcEEEEeCCCCce----eeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319 87 GDKTVRLWDARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
-|-+..|||+.++.. .+...+..++..++|...+ ..+++.+.||++++||+|.... . .
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------S----T------- 233 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------S----T------- 233 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------c----e-------
Confidence 999999999998732 2233455667778888755 4567788899999999876321 0 0
Q ss_pred CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECC-CCCEEEEeeCCC-eEEEeeCCC-cEEEEEeeecccCeEE
Q 021319 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADS-LVSLWDISE-MLCVRTFTKLEWPVRT 238 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~t~~~dg-~i~vwd~~~-~~~~~~~~~~~~~v~~ 238 (314)
.+|.-+. -..+...++|++ |-++||+-..|. .|.+.|++. ...+.++.+|...|+.
T Consensus 234 ------------IIYE~p~---------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNg 292 (364)
T KOG0290|consen 234 ------------IIYEDPS---------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNG 292 (364)
T ss_pred ------------EEecCCC---------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccc
Confidence 1111111 022345566765 446777766664 699999985 4567788999999999
Q ss_pred EEEccC-CcEEEEecCCceEEEEECCCC------CeEEEEeccCccceeEEcCC-CCeeEEEecC
Q 021319 239 ISFSHT-GDYIASASEDLFIDISNVHTG------RTVHQIPCRAAMNSVEWNPK-YNLLAYAGDD 295 (314)
Q Consensus 239 ~~~sp~-~~~l~s~s~d~~v~v~~~~~~------~~~~~~~~~~~i~~v~~~~~-~~~la~~~~d 295 (314)
|+|.|. ...|+|++.|..+.+||+... .++..+...++|+.+.|+|. ...||.+...
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 999997 478999999999999998752 23334445778999999975 5677766644
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.1e-16 Score=125.02 Aligned_cols=250 Identities=20% Similarity=0.302 Sum_probs=177.5
Q ss_pred cceeeecccccEEEEEECCCCCEEE-EeeCC-------CcEEEeecCCCCCC-ceeeE----Eee-cCCCCEEEEEEcCC
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLA-SGSVD-------QTARVWHIEPHGHG-KVKDI----ELR-GHADSVDQLCWDPK 77 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~-s~~~D-------~~v~iw~~~~~~~~-~~~~~----~~~-~h~~~v~~l~~~~~ 77 (314)
..+.|..|.+.|..++-+|-.+.|+ |+-+| -.+.||.+...-.. ..... .+. .+-+.|.|+-|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 4466777899999999999776544 44321 25678988542211 11111 122 34558999999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce-eeeEEe------cCceEEEEEcc--CCCEEEEEeCCCcEEEEEccCCeEeeeec-
Q 021319 78 HADLIATASGDKTVRLWDARSGKC-SQQAEL------SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK- 147 (314)
Q Consensus 78 ~~~~l~s~~~D~~v~iwd~~~~~~-~~~~~~------~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 147 (314)
. ..+++- .|..|.+|++..+.. +..... .....+-+|+| +++.+++. .|+++..||+|+.+....++
T Consensus 135 s-~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 135 S-DKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred C-CeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence 5 455544 489999999987754 222211 11223456777 66666654 68899999999877665553
Q ss_pred -cCcceeeEEeccCCCeEE-EEcCCceEEEEeCCCC-CceeeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCc
Q 021319 148 -FGYEVNEIAWNMTGEMFF-LTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~ 223 (314)
++..++.+.|+|+...++ +++.+|.+++|+.+.. .|+.++.+|...++++.|+|.- +++.+|+.|..|.+|-...-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 567789999999987655 5567899999998754 4888999999999999999965 56789999999999964211
Q ss_pred -----------------------------EEEEEeeecccCeEEEEEccCCcE-EEEecCCceEEEEECCC
Q 021319 224 -----------------------------LCVRTFTKLEWPVRTISFSHTGDY-IASASEDLFIDISNVHT 264 (314)
Q Consensus 224 -----------------------------~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s~d~~v~v~~~~~ 264 (314)
-.+.++..|+..|.+++||.-..+ +||-|.||++.|-.+..
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 013456678889999999976665 66779999999988754
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.5e-16 Score=140.14 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=148.5
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
.+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.+.. ......+.+| ....+|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 45567788899999999999999988754 369999986532 1111123333 346799998654444555788
Q ss_pred cEEEE--eCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCe-EeeeeccCcceeeEEeccCCCeEE
Q 021319 90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 90 ~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.+.|| |+.++................|+|||+.|+..+ .++...+|++.... ........ . ....|+|+++.++
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia 348 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLV 348 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEE
Confidence 77766 666665443322233445688999999877554 57788888764321 11111111 1 4567999999988
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC--CCcEEEEEeeecccCeEEEEEcc
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSH 243 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~sp 243 (314)
+...++ +..|++...+....... ......+|+|+|++++.++.++.+.+|++ .++..++.+..++..+...+|+|
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 877654 55578765543221111 12356789999999999999998888876 35677778877777788899998
Q ss_pred C
Q 021319 244 T 244 (314)
Q Consensus 244 ~ 244 (314)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 4
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=9e-16 Score=140.46 Aligned_cols=253 Identities=14% Similarity=0.135 Sum_probs=175.6
Q ss_pred ccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCCCCCEEEEEe
Q 021319 11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 86 (314)
+.+..+..|...|..++.+++. .+|+|||.||+||+|+...-... ......+.-....+.++...+. ++.+|.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEEc
Confidence 5556677899999999988765 99999999999999998532211 1222233334567888888776 46778889
Q ss_pred CCCcEEEEeCCCCce-------eeeEEec--CceEEEE-Ec-cCCC-EEEEEeCCCcEEEEEccCCeEeeeeccC---cc
Q 021319 87 GDKTVRLWDARSGKC-------SQQAELS--GENINIT-YK-PDGT-HIAVGNRDDELTILDVRKFKPIHRRKFG---YE 151 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~-------~~~~~~~--~~~~~~~-~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~ 151 (314)
.||.|++.++..... .+..+.+ +..+.|. +. ..+. .++.+...+.+..||+++.....+.+.. ..
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999998865211 1222222 2233332 22 2333 6777888899999999987665554432 45
Q ss_pred eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee-ecccceEEEEECCCC---CEEEEee--CCCeEEEeeCCCcEE
Q 021319 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMG---RYFAVGS--ADSLVSLWDISEMLC 225 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~---~~l~t~~--~dg~i~vwd~~~~~~ 225 (314)
+.+++.+|.+..++.|+..|.+.+||++=..++.... .+...++.+..+|.. ...++++ ..+.|.+|++.++.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 8889999999999999999999999997666665542 344667777777643 3444444 467899999999988
Q ss_pred EEEeeec-cc------------------CeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 226 VRTFTKL-EW------------------PVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 226 ~~~~~~~-~~------------------~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
...+... +. +....++.-.+.++.+|+.|..|+.||...
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 7766433 11 122234444567899999999999999754
No 191
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=3.2e-17 Score=130.14 Aligned_cols=238 Identities=22% Similarity=0.322 Sum_probs=144.0
Q ss_pred eeccceeeecccccEEEEEECCCC-CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 9 ~~~~~~~~~gH~~~V~~v~~s~~g-~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
+....+.|.||...|+.+.|.|+. ++++|||.|.+||+|++++..+- ...--+.||.+.|.++.|++++ .+|+|++.
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~~g-d~i~ScGm 201 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSLDG-DRIASCGM 201 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcCCC-CeeeccCC
Confidence 334556788999999999999986 68999999999999999764211 1111356899999999999985 69999999
Q ss_pred CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
|.++++|++...+....++. +..|+|++...-.- .....+.+..+ +-.+...+.++.|- |+++++-
T Consensus 202 Dhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfp--t~~~~fp~fst-----~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFP--TPKTHFPDFST-----TDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cceEEEEecChhHHhhhhhh-----hcccCCCCccCcCC--ccccccccccc-----cccccchHHHHHHH--hhheeec
Confidence 99999999985543211111 12233322110000 00000000000 00011112233332 2333333
Q ss_pred cCCceEEEEeCCCC-Cc-------------eeeeeecccceEEE--EECCCCCEEEEeeCCCeEEEeeCCCcEEE--EEe
Q 021319 168 TGNGTVEVLTYPSL-RP-------------LDTVVAHTAGCYCI--AIDPMGRYFAVGSADSLVSLWDISEMLCV--RTF 229 (314)
Q Consensus 168 ~~~g~~~~~~~~~~-~~-------------~~~~~~~~~~i~~i--~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~ 229 (314)
+.++.+..|..... +. +..+.--...++-+ +|+|-+++||.|...|.|.+||++..... .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 44444444433100 00 01111112233333 56677899999999999999999765432 122
Q ss_pred e--ecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 230 T--KLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 230 ~--~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
. .....|...+||-||.+|+...+|+.|.-||.
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2 23457899999999999999999999999985
No 192
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=7.6e-16 Score=125.22 Aligned_cols=212 Identities=16% Similarity=0.244 Sum_probs=151.9
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 140 (314)
.+.||.++|..+.|+|.+.+.|||||.|.+|.||.+..+...... ......+ .
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l--tepvv~L----------~--------------- 128 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL--TEPVVEL----------Y--------------- 128 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc--ccceEEE----------e---------------
Confidence 356999999999999999999999999999999998755422211 1111111 1
Q ss_pred eEeeeeccCcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 141 KPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
-+...+..++|+|.. +.+++++.|..+.+|+..+.+.+.++. |..-|++++|+.+|.+|++.+.|..|||||
T Consensus 129 ------gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 129 ------GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ------ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 112345567788765 556677788888888888887776665 999999999999999999999999999999
Q ss_pred CCCcEEEEEeeeccc-CeEEEEEccCCcEEEEe---cCCceEEEEECCC---CCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319 220 ISEMLCVRTFTKLEW-PVRTISFSHTGDYIASA---SEDLFIDISNVHT---GRTVHQIPCRAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 220 ~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~---~~~~~~~~~~~~i~~v~~~~~~~~la~~ 292 (314)
.++++.+..-..|+. .-..+-|--++.++-|| ..+..+-+||... .-.+..+.....|.==-|-|+..++..+
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~ 281 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC 281 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE
Confidence 999999887766654 23345577788855555 3467899998654 3334445444455544666777777666
Q ss_pred ecCCcccccccceEEeccccC
Q 021319 293 GDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 293 ~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|.- +|.||-|-+++
T Consensus 282 GKG-------D~~IRYyEit~ 295 (472)
T KOG0303|consen 282 GKG-------DSSIRYFEITN 295 (472)
T ss_pred ecC-------CcceEEEEecC
Confidence 632 36788777654
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=3.2e-15 Score=118.47 Aligned_cols=231 Identities=16% Similarity=0.251 Sum_probs=158.1
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEE-EeCC------CcEEEEEccCC
Q 021319 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAV-GNRD------DELTILDVRKF 140 (314)
Q Consensus 69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~d------~~i~i~d~~~~ 140 (314)
...++|+.+. -..+.+.|.-.|||+.+.-+............. +.+.--.++++. |+.+ ..+.|||-...
T Consensus 8 ~lsvs~NQD~--ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDH--SCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eeEEEEccCC--ceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 3458998764 344666777789999865332111111111122 112223455654 3332 36999997677
Q ss_pred eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCC-CCCceeeee--ecccceEEEEECCCCCEEEEeeC-CCeEE
Q 021319 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSA-DSLVS 216 (314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~-dg~i~ 216 (314)
+++.......++..+....+ .+ +....+.+.+|.+. ..+.+..+. ..+.+..+++-+.+..+||.-+. -|.|+
T Consensus 86 ~~i~el~f~~~I~~V~l~r~--ri-Vvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRD--RI-VVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEeccceeeEEEcCC--eE-EEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 77777777778888776543 23 33346789999887 445444443 22334444444444556665444 48999
Q ss_pred EeeCCCcEE--EEEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEec---cCccceeEEcCCCCeeE
Q 021319 217 LWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 217 vwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~---~~~i~~v~~~~~~~~la 290 (314)
+-|+...+. ...+..|+.+|.+++.+-+|..+||||..|+ |+|||.++|+++.++.- +..|.+++|||+..+||
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEE
Confidence 999976655 4677899999999999999999999999886 79999999999998863 45799999999999999
Q ss_pred EEecCCcccccccceEEecccc
Q 021319 291 YAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 291 ~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
.+| |.||+-||++.
T Consensus 243 vsS--------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 243 VSS--------DKGTLHIFSLR 256 (346)
T ss_pred EEc--------CCCeEEEEEee
Confidence 887 44899999984
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=4.5e-16 Score=131.15 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=131.5
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeEE-----ecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE
Q 021319 82 IATASGDKTVRLWDARSGKCSQQAE-----LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI 155 (314)
Q Consensus 82 l~s~~~D~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 155 (314)
++-|-.-|.+.+.|.......+.++ .+....++.|.|-+ ..+++...+|.+.++|...... ....+.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-------~t~p~~ 260 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-------ATAPSY 260 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-------CCCCcc
Confidence 3457777888888877644333222 12445678888754 4556677899999998632111 111111
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 235 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (314)
...+++..+......+. ....|+..+..-.+.|+..+|+|||++||+-+.||.+||||..+.+.+-.++-+=..
T Consensus 261 ~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG 334 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG 334 (636)
T ss_pred cccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence 12233444433322211 122455555555668999999999999999999999999999887766555444457
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE-eccCccceeEEcC
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNP 284 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~-~~~~~i~~v~~~~ 284 (314)
..|++|||||+|+++|++|-.|.||.+...+++-.- .|+..|+.|+|-|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 899999999999999999999999999998887553 3677899999985
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.5e-15 Score=132.49 Aligned_cols=277 Identities=19% Similarity=0.250 Sum_probs=184.7
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC--CEEEEEeCCCcEEE
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRL 93 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~D~~v~i 93 (314)
+.|-...=.--.||+|+++++.+.. ..|+||...++.+. ..+.+|..++..+.+.|... .++.+++.||.|++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i----~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECI----TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhh----hhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 3333333333458999998777764 68999988765432 25789999999999988765 46779999999999
Q ss_pred EeCCCCceeeeEEecCceEEEEEcc----CCCEEEEEeCCCcE-EEEEccCCeEeeee-------------ccCcceeeE
Q 021319 94 WDARSGKCSQQAELSGENINITYKP----DGTHIAVGNRDDEL-TILDVRKFKPIHRR-------------KFGYEVNEI 155 (314)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i-~i~d~~~~~~~~~~-------------~~~~~~~~~ 155 (314)
||...+...+.+....++..+.+.| ....+..+..+..+ .....+..+...+. +.......+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999998888777666655544422 11122222222211 11111111111110 001124567
Q ss_pred EeccCCCeEEEEcCCceEEEEeCCCCCce----eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC--c--EEEE
Q 021319 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPL----DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE--M--LCVR 227 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~--~--~~~~ 227 (314)
..++.++........+ +.+|..+..... ..-..|.-.++|.+++|+++++|+|..||+|.+|.-.. . .-..
T Consensus 167 ~~~~~ge~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCK-IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEEeee-EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence 7777777766665544 344444332110 11124666789999999999999999999999996432 1 1224
Q ss_pred EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 228 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 228 ~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
.+.-|..+|.+++|+++|.+|.||+..+.+-+|.+++++ .+-+| ..++|..+.++|++.+.+..-.|..+-
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 555677899999999999999999999999999999988 22233 367899999999999988888776544
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.8e-15 Score=119.47 Aligned_cols=272 Identities=15% Similarity=0.260 Sum_probs=192.7
Q ss_pred cccEEEEEECCCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
-..|.-+.|+.|.-+++++. .|+.|.+|++...+ ....+..-.+.+..++|+|++..++.+..-|-.|.+|.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence 35788899999998877765 68899999986432 23455666788999999999888888999999999999998
Q ss_pred CceeeeEEecCceEEEEEccCCCEEEEEeCCCc------------------------------------EEEEEccCCeE
Q 021319 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDE------------------------------------LTILDVRKFKP 142 (314)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~------------------------------------i~i~d~~~~~~ 142 (314)
.++......+.....++|+|||++.+..++... +.+||---.-.
T Consensus 124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk 203 (447)
T KOG4497|consen 124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK 203 (447)
T ss_pred ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence 877655444555566888999988887776432 22222111111
Q ss_pred eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee------------------------------------
Q 021319 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT------------------------------------ 186 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------------------------ 186 (314)
+..++.+..+..++|+|.+..+++|..|+.+++.+.-+-+++.+
T Consensus 204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~ 283 (447)
T KOG4497|consen 204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD 283 (447)
T ss_pred eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence 22233444577889999999999999998888764211100000
Q ss_pred eeec------------------------------ccceEEEEECCCCCEEEEeeCC--CeEEEeeCCCcEEEEEeeeccc
Q 021319 187 VVAH------------------------------TAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLEW 234 (314)
Q Consensus 187 ~~~~------------------------------~~~i~~i~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~ 234 (314)
+..| .-++.-++|++|..++||-... ..+-+||+...+.. .+.....
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avLiQk~ 362 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVLIQKH 362 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhhhhcc
Confidence 0000 1124568999999999988654 46999999765432 2223456
Q ss_pred CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+|.+..|+|.-..|+.......+..|...-...+..-..+-.|..+.|+-+|..++-.|.|.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 89999999999888888777789999876655554433345799999999999999999875
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=115.59 Aligned_cols=233 Identities=15% Similarity=0.182 Sum_probs=165.2
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC------CCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
..|.+-+|+|.+++|++|..+|.|.+..+..-. .++......++|.++|+.++|+. .+|++|+ ||.|+=|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEe
Confidence 356677899999999999999999999875321 12233344579999999999973 4666665 5999988
Q ss_pred eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEE
Q 021319 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (314)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (314)
..+..... .+.-.+|.+..+...... .-.+++.+...|..+.++++++|+.++
T Consensus 87 ~W~E~~es--------------------------~~~K~lwe~~~P~~~~~~-evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 87 EWNEEEES--------------------------LATKRLWEVKIPMQVDAV-EVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred eehhhhhh--------------------------ccchhhhhhcCccccCcc-cCCccceeEeccCCCcEEEecCCeEEE
Confidence 76532210 011123333222211111 113566666677777788888999999
Q ss_pred EEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC--------eEEEEEccCCc
Q 021319 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--------VRTISFSHTGD 246 (314)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~sp~~~ 246 (314)
-|++++.+..+++.+|..-+-++.--.....+.+|+.||++|+||+++.++++.+...+.+ -.-.+..-+..
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED 219 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence 9999998888899999999999988555667889999999999999999998887654321 11123334567
Q ss_pred EEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319 247 YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 247 ~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
+|++|+. -.+.+|++...+....++-.+++--|.|-.+
T Consensus 220 WlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 220 WLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred eEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc
Confidence 7776653 3589999999888888888888888888643
No 198
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.1e-15 Score=122.51 Aligned_cols=263 Identities=16% Similarity=0.209 Sum_probs=194.0
Q ss_pred cccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCcee-e-EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 20 ~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~-~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
...|.+++|.-+++ .|..++.|-.+.....+........ . -....-..+|..++.. ...|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence 45788888886664 4666667778877766543221110 0 0223345566666543 24678899999999998
Q ss_pred CCCCcee----eeEEecCceEEEEEccCCCE-EEEEeCC--CcEEEEEccCCeEeeeeccC----------cceeeEEec
Q 021319 96 ARSGKCS----QQAELSGENINITYKPDGTH-IAVGNRD--DELTILDVRKFKPIHRRKFG----------YEVNEIAWN 158 (314)
Q Consensus 96 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~ 158 (314)
...+... ...........+.-.+..+. +++|+.. ..+.+||+...+++...+.. .-...+.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8755421 11122233334444454444 4558888 78999999988877665432 124566777
Q ss_pred cC--CCeEEEEcCCceEEEEeCC-CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE-eeeccc
Q 021319 159 MT--GEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEW 234 (314)
Q Consensus 159 ~~--~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~ 234 (314)
+. ...|++++..+.+++|+.. +.+|+..+...+.+++++...|+++.+++|..-|.+..||+++++.+.. +.+...
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 76 6788999999999999975 5678888888889999999999999999999999999999999887755 788889
Q ss_pred CeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
.+++|..+|..++||+++-|..++|+|+.+-+++.+.=.+...+++-+.++
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999999999999999999777766555677888877664
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.6e-16 Score=126.17 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=140.2
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCC-eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee--
Q 021319 112 INITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-- 188 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 188 (314)
..++|+++|..|++++.||++++|+..+. ......++..++.++.|+|+++.++..+.+ ..++|+..+.-++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 56889999999999999999999995444 444556778899999999999999999988 89999988775554433
Q ss_pred ecccceEEEEECCCC-----CEEEEeeCCCeEEEeeCCCcEE---E--EEeeecccCeEEEEEccCCcEEEEecCCceEE
Q 021319 189 AHTAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEMLC---V--RTFTKLEWPVRTISFSHTGDYIASASEDLFID 258 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~ 258 (314)
........+.|+.++ +.++....-+.|+.||+..... + .+.......+++++-+++|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 222345567787777 3444555556788877643221 1 11112223699999999999999999999999
Q ss_pred EEECCCCCeEEEEe--ccCccceeEEcCCCCeeEEEecCC
Q 021319 259 ISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 259 v~~~~~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
++++.+-+.++.++ |...|+.|.|+|+.+.+++.+.|.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 99999888777665 567899999999999988877663
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.72 E-value=8.5e-16 Score=119.92 Aligned_cols=154 Identities=22% Similarity=0.374 Sum_probs=112.4
Q ss_pred eeEEeccCCCeEEEEcC----------CceEEEEeCC-CCCceeeeee-cccceEEEEECCCCCEEEEe--eCCCeEEEe
Q 021319 153 NEIAWNMTGEMFFLTTG----------NGTVEVLTYP-SLRPLDTVVA-HTAGCYCIAIDPMGRYFAVG--SADSLVSLW 218 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~~~----------~g~~~~~~~~-~~~~~~~~~~-~~~~i~~i~~~~~~~~l~t~--~~dg~i~vw 218 (314)
..+.|++.|+.+++-.. .+...+|.+. ...+...+.. ..+.|.+++|+|+|+.||+. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45678888887766543 2344555542 2234444433 34569999999999987644 456799999
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
|++ +..+..+. ..++..+.|||+|++|++|+.+ |.+.+||+.+.+.+.+..+. .++.++|+|+|++|+++...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 996 55555553 4567899999999999998754 67999999988888777654 47899999999999998864
Q ss_pred CcccccccceEEecccc
Q 021319 296 KNKYQADEGVFRIYGFE 312 (314)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (314)
. + ...+..++||+++
T Consensus 165 ~-r-~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 P-R-LRVDNGFKIWSFQ 179 (194)
T ss_pred c-c-eeccccEEEEEec
Confidence 2 1 2356889999985
No 201
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=7.8e-16 Score=122.19 Aligned_cols=232 Identities=19% Similarity=0.290 Sum_probs=170.4
Q ss_pred cccEEEEEEC-------CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC---EEEEEEcCCCCCEEEEEeCCC
Q 021319 20 KKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 20 ~~~V~~v~~s-------~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~l~s~~~D~ 89 (314)
...|++.+|- |+..++++.+.|.-|++||.-++.. ..+.+.-.|.+. ..+|+|+|++. .|+ ++...
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l--raSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykr 179 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL--RASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKR 179 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc--ccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccc
Confidence 3568888885 6778999999999999999866432 222222234443 45799999875 443 56778
Q ss_pred cEEEEeC-CCCceeeeE--------EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEec
Q 021319 90 TVRLWDA-RSGKCSQQA--------ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWN 158 (314)
Q Consensus 90 ~v~iwd~-~~~~~~~~~--------~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~ 158 (314)
+||++|+ +.|+..... ...+-+.+++|+|-. +.+++|+....+-|+.-....|+... .++.-+..+.|.
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence 9999998 666532211 112334568899855 58899998888888876665555443 455679999999
Q ss_pred cCCCeEEEEcC-CceEEEEeCCCC-Cceeeeeecccc-eEE--EEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeec
Q 021319 159 MTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVAHTAG-CYC--IAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKL 232 (314)
Q Consensus 159 ~~~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~-i~~--i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~ 232 (314)
++|+.++++.. +..|..|+++.. .++..+..|... -.. .+..|++++||+|+.||.|++||+++ +..+..+..+
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 99999998874 678999998754 466666666552 223 45678999999999999999999987 5556677788
Q ss_pred ccCeEEEEEccCCcEEEEecCCc
Q 021319 233 EWPVRTISFSHTGDYIASASEDL 255 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~ 255 (314)
...++.++++|-=.++|++|...
T Consensus 340 sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccceecCcccceeeeccCce
Confidence 88999999999988899888763
No 202
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.6e-15 Score=125.56 Aligned_cols=271 Identities=15% Similarity=0.204 Sum_probs=192.6
Q ss_pred cccccEEEEEECCCCCEE-EEeeCCCcEEEeecCCCCCCceeeEEeecCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l-~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
+|...-+.+..+|||+|+ +||-+--.|++||+.. .++.+..|.++ |.-.-.+.+- .-++---.|.+|.+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIEFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccch-hhheEeecCceeeeh
Confidence 577888999999999985 5566889999999864 34455666543 3333333222 223334456666554
Q ss_pred eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceE
Q 021319 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTV 173 (314)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 173 (314)
.-- | ......+......++++.-..-|.+++....+.-+++..++.+...+.. ..++++..++...++++|+.+|.+
T Consensus 122 ak~-G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 122 AKY-G-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hhc-C-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 321 1 1111112222234555555555677777778888999988887776654 678899999999999999999999
Q ss_pred EEEeCCCCCceeeee------eccc-----ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEE
Q 021319 174 EVLTYPSLRPLDTVV------AHTA-----GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISF 241 (314)
Q Consensus 174 ~~~~~~~~~~~~~~~------~~~~-----~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~ 241 (314)
..|+.+....+..+. .|.+ .|+++.|+.+|-.+++|.++|.+.+||++..+.+. .-.+...++..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999987654433332 2333 38999999999999999999999999998765542 22345668999999
Q ss_pred ccCCcEEEEecCCc-eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 242 SHTGDYIASASEDL-FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 242 sp~~~~l~s~s~d~-~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
.+.+..=...|.|. .++|||-.+|+....+.....++.+++-|+..|+.+|.++..
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence 88755544455664 579999999999988877777999999999999999987653
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=4.7e-14 Score=124.08 Aligned_cols=234 Identities=15% Similarity=0.237 Sum_probs=153.3
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKP 118 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 118 (314)
..|.+||.+... . ..+..+...+....|+|++. .|+..+ .+..+.+||+.+++........+......|+|
T Consensus 179 ~~l~~~d~dg~~---~--~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYN---Q--FVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCC---C--EEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 367777765322 1 12345667889999999875 444332 34578999998887554444444455688999
Q ss_pred CCCEEEEE-eCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC-ceEEEE--eCCCCCceeeeeeccc
Q 021319 119 DGTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAHTA 192 (314)
Q Consensus 119 ~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~ 192 (314)
||+.|+.. ..++ .|.+||+.+.+...............|+|+++.+++.... +...+| +....+. ..+..+..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~ 331 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS 331 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence 99988865 3344 4888898776544333333456778999999988776653 444444 5544332 23333334
Q ss_pred ceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCce---EEEEECCCCC
Q 021319 193 GCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF---IDISNVHTGR 266 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~---v~v~~~~~~~ 266 (314)
......|+|+|++++..+.+ ..|.+||+.++... .+... ......+|+|||++|+.++.++. +.++++ +|+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~ 408 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR 408 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence 45678899999998876544 25888998877543 33321 22345789999999999998764 566666 455
Q ss_pred eEEEEe-ccCccceeEEcCC
Q 021319 267 TVHQIP-CRAAMNSVEWNPK 285 (314)
Q Consensus 267 ~~~~~~-~~~~i~~v~~~~~ 285 (314)
....+. +.+.+...+|+|-
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CeEECccCCCCcCCcccCCC
Confidence 555554 3567899999983
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=3.8e-13 Score=115.19 Aligned_cols=265 Identities=19% Similarity=0.232 Sum_probs=171.4
Q ss_pred EEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEE
Q 021319 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI 114 (314)
Q Consensus 35 l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 114 (314)
+++-..++.|.|.|.++.. ...++......-..+.++|++ .+++.++.|+.|.++|+.+++.+.+.........+
T Consensus 9 ~V~~~~~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred EEEecCCCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 3456678999999987532 222444433333456788875 57777889999999999999999999888888999
Q ss_pred EEccCCCEEEEEe-CCCcEEEEEccCCeEeeeeccC--------cceeeEEeccCCCeEEEE-cCCceEEEEeCCCCCce
Q 021319 115 TYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFG--------YEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPL 184 (314)
Q Consensus 115 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 184 (314)
++++||++++++. ..+.+.++|.++.+++..+... ..+..+..++....+++. -+.+.+.+.++...+++
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998765 6889999999999888776543 234566667777766665 45699999998766554
Q ss_pred ee-eeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEEEEEeee----ccc-----------Ce-----------
Q 021319 185 DT-VVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK----LEW-----------PV----------- 236 (314)
Q Consensus 185 ~~-~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~----~~~-----------~v----------- 236 (314)
.. ............|+|++++++++ ..+..|-++|..+.+.+..+.. |.. ++
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 32 22334456788999999987654 5566899999887765443210 000 00
Q ss_pred ----------------------------EEEEEccCCcEEEEe----cCCceEEEEECCCCCeEEEEecc--CccceeEE
Q 021319 237 ----------------------------RTISFSHTGDYIASA----SEDLFIDISNVHTGRTVHQIPCR--AAMNSVEW 282 (314)
Q Consensus 237 ----------------------------~~~~~sp~~~~l~s~----s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~ 282 (314)
.-+.-||++++|... .....|.|+|..+.+.+..+... ..+.-++|
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 115669999999988 34488999999998777776532 34889999
Q ss_pred cCCCCeeEEEecCCcccccccceEEecc
Q 021319 283 NPKYNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 283 ~~~~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
+++|+.+..+.-+.+ |.+.|||
T Consensus 324 ~~dG~~v~vS~~~~~------~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGN------GAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--T------TEEEEEE
T ss_pred CCCCCEEEEEEecCC------CEEEEEE
Confidence 999998766555542 3555655
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.5e-15 Score=118.94 Aligned_cols=196 Identities=23% Similarity=0.349 Sum_probs=138.0
Q ss_pred ecccccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 17 ~gH~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
+.|..++++..|+. |-++|.++|-|-+..|||++.+..+. ....+-.|...|.+++|...+.++++|.|.||+||++|
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 45567999999986 45789999999999999998753222 23467799999999999987778999999999999999
Q ss_pred CCCCceeeeEEe----cCceEEEEEccC-CCEEEEEeCC-CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319 96 ARSGKCSQQAEL----SGENINITYKPD-GTHIAVGNRD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 96 ~~~~~~~~~~~~----~~~~~~~~~~~~-~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
++...-....-. ......++|+++ -+++|+-..| ..+.+.|+|.+
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P----------------------------- 276 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP----------------------------- 276 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----------------------------
Confidence 986543222111 122344555543 3344433322 23555555432
Q ss_pred CceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEE------EEEeeecccCeEEEEEc
Q 021319 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLC------VRTFTKLEWPVRTISFS 242 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~s 242 (314)
..++..+.+|.+.|+.++|.|. ...+++++.|..+.+||+.+.-. +..+. ....|+.+.|+
T Consensus 277 -----------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws 344 (364)
T KOG0290|consen 277 -----------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWS 344 (364)
T ss_pred -----------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeec
Confidence 3356677889999999999995 46799999999999999976533 11122 34578999999
Q ss_pred c-CCcEEEEecCC
Q 021319 243 H-TGDYIASASED 254 (314)
Q Consensus 243 p-~~~~l~s~s~d 254 (314)
| ....++.+...
T Consensus 345 ~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 345 SSQPDWIAICFGK 357 (364)
T ss_pred ccCCCEEEEEecC
Confidence 5 46777765543
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.7e-16 Score=130.92 Aligned_cols=226 Identities=22% Similarity=0.322 Sum_probs=146.9
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEEEEeCCCc
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKT 90 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~D~~ 90 (314)
..++|.||.+-|+|++|+.+|.+|+|||.|-.+.|||.-... .+.. .-.||.+.|+++.|-|.- ..+++||+.|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhs-I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHS-ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeee-eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 457789999999999999999999999999999999975322 1222 246899999999999864 357789999999
Q ss_pred EEEEeCCCCcee----------eeE-EecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEec
Q 021319 91 VRLWDARSGKCS----------QQA-ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (314)
Q Consensus 91 v~iwd~~~~~~~----------~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
|+++|+...+-- +.. -.......++-.|++ +.+.+++.||+++-+|+|.+..-..... ....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~-~~~~----- 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED-CPSI----- 192 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc-ccHH-----
Confidence 999998742210 000 011223345666777 6677888999999999887532111000 0000
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCC-EEEEeeCCCeEEEeeCCCc--------------
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM-------------- 223 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~t~~~dg~i~vwd~~~~-------------- 223 (314)
+..+...--+..|+.++|... +||+|+.|-..++||.+..
T Consensus 193 -------------------------l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 193 -------------------------LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred -------------------------HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 000001112456788888654 6888888888888883211
Q ss_pred ----EEEEEeee-c-----------ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEE
Q 021319 224 ----LCVRTFTK-L-----------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 224 ----~~~~~~~~-~-----------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~ 271 (314)
.|++.|.. | ...+.-+.|+|+|.-|+..=..-.|+++|+..++.+..+
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 12222211 1 112456789999976654444445999999887765543
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.3e-16 Score=132.16 Aligned_cols=221 Identities=13% Similarity=0.147 Sum_probs=181.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC
Q 021319 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG 149 (314)
Q Consensus 70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 149 (314)
..+.+..+ +..++.|+.-|.|-.+|..+++....+.....+..+.|..+..++|++ ....+.|||- .+..++..+..
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~ 209 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH 209 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc
Confidence 44566655 567888999999999999999988887777767778888777777766 5567888884 44556666655
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 229 (314)
.++..+.|-|-.-.+++++..|.+...|...++.+..+..-.+.+..++-+|-+-.+-+|..+|+|.+|.......+-.+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 67777888888888888999999999999888877777666778889999999999999999999999998877777677
Q ss_pred eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319 230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~ 293 (314)
..|..+|++|++.|+|+|+||++.|..++|||++.-..++.+...-+...+++|..|.+.++-|
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYG 353 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecC
Confidence 7899999999999999999999999999999999877777766556788899997665544444
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=120.53 Aligned_cols=248 Identities=19% Similarity=0.245 Sum_probs=166.0
Q ss_pred cceeeecccccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeC-
Q 021319 12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG- 87 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~- 87 (314)
..+.+.+|...++.+.|.. ..+.+.+|+.||+||+||+..+.. ...+...+|+ .+-.++..+.. .+++++|..
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~ 138 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPFICLDLNCK-KNIIACGTEL 138 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcceEeeccCc-CCeEEecccc
Confidence 4567789999999999976 467899999999999999976543 3344455666 44555555433 356666643
Q ss_pred ---CCcEEEEeCCCCce-eeeE--EecCceEEEEEccC-CCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEE
Q 021319 88 ---DKTVRLWDARSGKC-SQQA--ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIA 156 (314)
Q Consensus 88 ---D~~v~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~ 156 (314)
|-.|.+||+|..+. +... .+...+..+.|.|+ .++|++|+.||.+.+||++... .+..+.++..+..+.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 67889999998765 3332 23455678999985 5788899999999999987652 234455667788999
Q ss_pred eccCC-CeEEEEcCCceEEEEeCCCCCceeeeeec---------ccc-eEEEE-ECC-CCCEEEEeeC-CCeEEEeeCC-
Q 021319 157 WNMTG-EMFFLTTGNGTVEVLTYPSLRPLDTVVAH---------TAG-CYCIA-IDP-MGRYFAVGSA-DSLVSLWDIS- 221 (314)
Q Consensus 157 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~-i~~i~-~~~-~~~~l~t~~~-dg~i~vwd~~- 221 (314)
|...+ +.+.+-+..+...+|.+....+...+..- ... -+-|. .+| +...+++++. -+...++-+.
T Consensus 219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeee
Confidence 98766 45666677788899988765433222110 000 01111 223 3445555555 3555555433
Q ss_pred --Cc---EEEEEeee-cccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 222 --EM---LCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 222 --~~---~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
++ ..+..+.+ |..-|+++.|.-.+.++.||++||.+.+|..
T Consensus 299 ~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22 22333444 5667889999999999999999999999985
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.6e-15 Score=134.79 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=163.7
Q ss_pred ccEEEEEECC--CCCEEEEeeCCCcEEEeecCCCCCCce-eeE---EeecCC----CCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 21 KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKV-KDI---ELRGHA----DSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 21 ~~V~~v~~s~--~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~---~~~~h~----~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
..|+.+++-- |..++++|+.||.||||+--.....+. ... .+.++. +.=.-+.|....+ +|+++|.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence 4688888743 345799999999999996422211110 000 111111 1112357776655 5555566789
Q ss_pred EEEEeCCCCceeeeEEecCceE--EEE-EccCCCEEEEEeCCCcEEEEEccCCeE---eeee-ccCc--ceeeEEeccCC
Q 021319 91 VRLWDARSGKCSQQAELSGENI--NIT-YKPDGTHIAVGNRDDELTILDVRKFKP---IHRR-KFGY--EVNEIAWNMTG 161 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~~--~~~~~~~~~~~ 161 (314)
|||||.....+........... +++ ..+.|+.+++|..||.+++||.|...+ +... ++.. .+..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 9999998877776665544332 232 224579999999999999999886543 2222 2222 26777777766
Q ss_pred C-eEEEEcCCceEEEEeCCCCCce--eeeeecc--c-ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----
Q 021319 162 E-MFFLTTGNGTVEVLTYPSLRPL--DTVVAHT--A-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---- 231 (314)
Q Consensus 162 ~-~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~--~-~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---- 231 (314)
- .+++++.+|.|++|+++..... .+...|. + ..+++.+++....+|+|+. +.|+||++...+ +..++.
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGF 1346 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCccc
Confidence 4 4889999999999998764221 1222332 2 4899999999999999998 999999986432 222221
Q ss_pred ---cccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319 232 ---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 266 (314)
Q Consensus 232 ---~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~ 266 (314)
-...+.+++|+|---.||.|+.|..|.||...+.+
T Consensus 1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 12367999999999999999999999999876643
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.8e-14 Score=124.69 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=143.4
Q ss_pred eeeecccccEEEEEECCCCCEEEEee---CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC-
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGS---VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK- 89 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~---~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~- 89 (314)
+.+..+...+.+.+|||||+.|+..+ .+..+.+|++.... .. .+....+.+....|+|++..++++.+.++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 44555667899999999999988654 24578888886532 11 12222333456899998765555555555
Q ss_pred -cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC-CcEEEE--EccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 90 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.|.+||+.++................|+|||+.|+..+.+ +...+| |+...+...-...........|+|+|+.++
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 4888999888765443333445678899999988776653 444444 665543322122233345688999999887
Q ss_pred EEcCC---ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCe---EEEeeCCCcEEEEEeeecccCeEEE
Q 021319 166 LTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL---VSLWDISEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 166 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~---i~vwd~~~~~~~~~~~~~~~~v~~~ 239 (314)
....+ ..+.++++.+.+. ..+.. ........|+|||++++.++.++. +.++++. +...+.+..++..+...
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p 423 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 423 (429)
T ss_pred EEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCc
Confidence 76533 3567777765542 22221 122345789999999998887764 6677763 44456666677778888
Q ss_pred EEcc
Q 021319 240 SFSH 243 (314)
Q Consensus 240 ~~sp 243 (314)
+|+|
T Consensus 424 ~Wsp 427 (429)
T PRK03629 424 AWSP 427 (429)
T ss_pred ccCC
Confidence 8887
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=9.8e-15 Score=116.38 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=168.2
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 021319 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104 (314)
Q Consensus 25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~ 104 (314)
-++|||+|+++|+++.- .+.|=|.++.. ...+.-.-+.|.-+-|..+....+.....|+.|.+|++...+.-..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq-----~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ-----LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh-----HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 46799999999999854 56665554311 1112222345666777766555566778899999999986654433
Q ss_pred EE-ecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-------------
Q 021319 105 AE-LSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------------- 169 (314)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 169 (314)
.. .......++|+|||+.+. +...+-.|.+|.+.+.+...-.-...-+..++|+++|++.+....
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 32 334556799999996665 566788999999977654322212222344555555554433221
Q ss_pred -----------------------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319 170 -----------------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (314)
Q Consensus 170 -----------------------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~ 226 (314)
+..+.+|+..-.-.+..+ .-+.++..++|+|.++++++|+.|+.+|+.+.-+.+..
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 111222221110011111 11246788999999999999999999998763221110
Q ss_pred E------------------------------------------------------------Eee------ecccCeEEEE
Q 021319 227 R------------------------------------------------------------TFT------KLEWPVRTIS 240 (314)
Q Consensus 227 ~------------------------------------------------------------~~~------~~~~~v~~~~ 240 (314)
. .++ +....+..++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0 000 0112355689
Q ss_pred EccCCcEEEEecCC--ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccc
Q 021319 241 FSHTGDYIASASED--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 241 ~sp~~~~l~s~s~d--~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
||+|..|+||-... ..+.+||+..-+....+..+.+|+...|+|..+-|+.+..-.-+|
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY 386 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLY 386 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEE
Confidence 99999999988665 679999998766555555677899999999888777665444444
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=5.8e-16 Score=128.30 Aligned_cols=256 Identities=18% Similarity=0.263 Sum_probs=191.0
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCce
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~ 101 (314)
.-+.+.++.+|.+|+-||.-|.|-.+|..+.. ...++. -...|.++.|-.+ .+++| ...-..+.|||-. |.-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~-v~Etv~Dv~~LHn-eq~~A-VAQK~y~yvYD~~-GtE 202 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEIN-VMETVRDVTFLHN-EQFFA-VAQKKYVYVYDNN-GTE 202 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccce----eeeeee-hhhhhhhhhhhcc-hHHHH-hhhhceEEEecCC-CcE
Confidence 45678899999999999999999999886532 222322 2456888888765 35655 4466789999954 444
Q ss_pred eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (314)
...+........+.|.|-.-+|++++..|.++..|+..++.+..+..+ .++....-+|-...+-++..+|+|.+|.-..
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 444444556677899999999999999999999999998877655443 3455556677777888899999999999998
Q ss_pred CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 260 (314)
Q Consensus 181 ~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~ 260 (314)
.+|+..+..|.+++.+++++++|+|+||.+.|..++|||++....+.++.. ..+...++||-.|- +..|....|.||
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~iw 359 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQIW 359 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc--eeeecCCeeeee
Confidence 999999999999999999999999999999999999999998877766654 56777888876553 334444558888
Q ss_pred E-CCCCC-----eEEEEeccCccceeEEcCCCCe
Q 021319 261 N-VHTGR-----TVHQIPCRAAMNSVEWNPKYNL 288 (314)
Q Consensus 261 ~-~~~~~-----~~~~~~~~~~i~~v~~~~~~~~ 288 (314)
. ...+. +...-.+.+.|..|.|.|--..
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV 393 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence 4 22322 1111123568999999994333
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.8e-14 Score=110.63 Aligned_cols=157 Identities=18% Similarity=0.334 Sum_probs=112.9
Q ss_pred CceEEEEEccCCCEEEEEeC----------CCcEEEEEccC-CeEeeeecc--CcceeeEEeccCCCeEEEEc--CCceE
Q 021319 109 GENINITYKPDGTHIAVGNR----------DDELTILDVRK-FKPIHRRKF--GYEVNEIAWNMTGEMFFLTT--GNGTV 173 (314)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~g~~ 173 (314)
.....+.|+++|..|++-.. -+...+|-++. ..+...... ..++.+++|+|+++.+++.. .+..+
T Consensus 6 ~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 6 VDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred cceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 34566888888887765443 12344555432 223333332 34699999999999887654 45689
Q ss_pred EEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE
Q 021319 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 250 (314)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 250 (314)
.+|+.. .+++..+ +...++.+.|+|+|+++++++.+ |.+.+||+++.+++.++.. ..+..++|+|+|++|++
T Consensus 86 ~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 86 TLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence 999985 4444444 34567899999999999998754 6799999999888877643 24789999999999999
Q ss_pred ecC------CceEEEEECCCCCeEEEE
Q 021319 251 ASE------DLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 251 ~s~------d~~v~v~~~~~~~~~~~~ 271 (314)
++. |..++||+. .|+.+.+.
T Consensus 161 a~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEe-cCeEeEec
Confidence 975 678899997 56766554
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=6.1e-15 Score=124.48 Aligned_cols=228 Identities=15% Similarity=0.246 Sum_probs=148.7
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE-eCCCCceeeeEEecCce--EEEEEc-------cCCCEEEEEeCCCcEE
Q 021319 64 GHADSVDQLCWDPKHADLIATASGDKTVRLW-DARSGKCSQQAELSGEN--INITYK-------PDGTHIAVGNRDDELT 133 (314)
Q Consensus 64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw-d~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~l~~~~~d~~i~ 133 (314)
.|...|.++.|.... .. ...+.|..+.+| |+.+... ......... ..+..- .....+++++.||.+.
T Consensus 12 r~~e~vc~v~w~~~e-ei-~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EI-YFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccc-eE-EEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 456667788887653 34 445555555554 5543322 111111111 011111 1234688888999998
Q ss_pred EEEccCCeEeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319 134 ILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (314)
Q Consensus 134 i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d 212 (314)
+.+-.. +.... ..+...+.+-.|+|+|.-++++++||.+++|.-...- ..++.....+|+|++|.|+..-++-+. .
T Consensus 89 il~k~~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 89 ILNKSA-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred Eecccc-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 876321 11111 2234567778899999999999999999999864321 123345677899999999876544332 3
Q ss_pred CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319 213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~ 292 (314)
+.+.+=-+.....+-..+.|+.-|.+++|+|..+.++||++|...+|||....-+...-.+.-+|++|+|+|+ +.++.+
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeee
Confidence 3344444444444556788999999999999999999999999999999744333333456678999999999 788888
Q ss_pred ecCCcc
Q 021319 293 GDDKNK 298 (314)
Q Consensus 293 ~~d~~~ 298 (314)
|-..-+
T Consensus 245 S~nt~R 250 (737)
T KOG1524|consen 245 SYNTAR 250 (737)
T ss_pred eeeeee
Confidence 865433
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.5e-13 Score=119.58 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=140.4
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEE-EeCCCcEEEEE-
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILD- 136 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d- 136 (314)
+..+...+...+|+|++. .|+..+. ...|.+||+.+++........+......|+|||+.|+. ...++...+|.
T Consensus 191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 446778889999999864 5555543 24599999998876554444455567899999998875 56677666664
Q ss_pred -ccCCeEeeee-ccCcceeeEEeccCCCeEEEEcC-CceEEEEeC--CCCCceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319 137 -VRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (314)
Q Consensus 137 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~ 211 (314)
+.... .... ..........|+|+|+.+++.+. .|...+|.+ .... ...+..+.......+|+|+|++++..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 43332 2222 12223456789999998776553 455555544 3332 2222222223345789999999987766
Q ss_pred CC---eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCc---eEEEEECCCCCeEEEEe-ccCccceeEEcC
Q 021319 212 DS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIP-CRAAMNSVEWNP 284 (314)
Q Consensus 212 dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~ 284 (314)
++ .|.+||+.++.... +... ......+|+|+|++|+.++.++ .+.+.+. .|+....+. ..+.+...+|+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 54 59999998775433 3222 2235679999999999887653 3555555 466555554 346788899998
Q ss_pred C
Q 021319 285 K 285 (314)
Q Consensus 285 ~ 285 (314)
-
T Consensus 425 ~ 425 (427)
T PRK02889 425 F 425 (427)
T ss_pred C
Confidence 4
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=7.7e-14 Score=110.83 Aligned_cols=223 Identities=17% Similarity=0.281 Sum_probs=168.2
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS- 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~- 98 (314)
..+|+|-+|++|+..+|.+-....|.||...... .......+..|...|+.+.|.|. .+.|++++.|..-.+|....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCC
Confidence 5789999999999999999999999999875432 24455678899999999999997 46889999999999999844
Q ss_pred Cceee---eEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEe-----eeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 99 GKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 99 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
+.... .+.+.....++.|+|..+.+++|+....|.|+-.+...-= -.+.....+.++.|+|++-.+++++.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 43322 3345667778999999999999999999999876543211 111223568999999999999999999
Q ss_pred ceEEEEeCC--------------CCCceee----eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeee
Q 021319 171 GTVEVLTYP--------------SLRPLDT----VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTK 231 (314)
Q Consensus 171 g~~~~~~~~--------------~~~~~~~----~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~ 231 (314)
+..+++... ...|+.. +..-.+.+..+.|+|+|..|+-.+.|..+.+=|-.... .+++...
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 999998531 1112222 22335678999999999999999999999999976543 3444433
Q ss_pred cccCeEEEEEccC
Q 021319 232 LEWPVRTISFSHT 244 (314)
Q Consensus 232 ~~~~v~~~~~sp~ 244 (314)
...|..++.|-.+
T Consensus 248 ~~lP~ls~~~ise 260 (361)
T KOG1523|consen 248 AQLPLLSVSWISE 260 (361)
T ss_pred ccCCceeeEeecC
Confidence 3467777777543
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-13 Score=121.53 Aligned_cols=233 Identities=17% Similarity=0.238 Sum_probs=151.0
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP 118 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 118 (314)
..|.+||.+... . ..+..+...+....|+|++. .|+..+. +..|.+||+.+++........+......|+|
T Consensus 184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCC---c--eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 368888875321 1 23456777889999999864 6665553 3469999998887654433444445688999
Q ss_pred CCCEEEE-EeCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cce--EEEEeCCCCCceeeeeeccc
Q 021319 119 DGTHIAV-GNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGT--VEVLTYPSLRPLDTVVAHTA 192 (314)
Q Consensus 119 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~ 192 (314)
||+.|+. .+.++ .|.+||+.+.+...............|+|+++.+++... .|. ++.++....+. ..+..+..
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~ 336 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN 336 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC
Confidence 9998864 34444 588899877654332222223456789999998877653 344 55556544432 22222333
Q ss_pred ceEEEEECCCCCEEEEeeCCC---eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCC
Q 021319 193 GCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGR 266 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~ 266 (314)
.....+|+|+|++++..+.++ .|.+||+.++... .+.... .....+|+|||++|+..+.+ ..+.+++.. ++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~ 413 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS-LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GR 413 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 345689999999988765443 5999999776543 333222 34457899999998877664 457777774 44
Q ss_pred eEEEEec-cCccceeEEcC
Q 021319 267 TVHQIPC-RAAMNSVEWNP 284 (314)
Q Consensus 267 ~~~~~~~-~~~i~~v~~~~ 284 (314)
..+.+.. .+.+...+|+|
T Consensus 414 ~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEcccCCCCCCCCccCC
Confidence 5555543 45688889987
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.4e-14 Score=122.93 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=144.0
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
.+.+..|...+.+..|+|||+.|+..+.+ ..|.+|++.... .. .+...........|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---RE--LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---EE--EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 34566777789999999999999988743 468899986532 11 23334444557899998766666666666
Q ss_pred --cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 90 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
.|.+||+.++...............+|+|||+.|+..+. ++. +.++|+...+...-...+......+|+|+++.+
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 588999988875443332233356889999998887653 444 555666554432211222234467999999998
Q ss_pred EEEcCCc---eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 165 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
+....++ .+.+|+..+.+.. .+. +........|+|||++++..+.+ +.+.++++... ..+.+..+...+..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~ 427 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVRE 427 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCC
Confidence 8765432 5788887655433 222 22234567899999987766553 35777787543 34445444556677
Q ss_pred EEEcc
Q 021319 239 ISFSH 243 (314)
Q Consensus 239 ~~~sp 243 (314)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77876
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.6e-13 Score=117.85 Aligned_cols=234 Identities=14% Similarity=0.184 Sum_probs=151.6
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCceeeeEEecCceEEEEEcc
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKP 118 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 118 (314)
..|.+||.+.. .. ..+..|...+....|+|++. .|+..+ .+..|.+||+.+++........+......|+|
T Consensus 182 ~~l~~~d~dg~---~~--~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGA---NV--RYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCC---Cc--EEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence 36667766432 11 23557788899999999865 555544 35789999998887654444445556788999
Q ss_pred CCCEEEE-EeCCCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeeccc
Q 021319 119 DGTHIAV-GNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTA 192 (314)
Q Consensus 119 ~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~ 192 (314)
||+.|+. ...++. |.++|+...+...-...........|+|+++.+++... +| .+++++....+. ..+..+..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~ 334 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG 334 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence 9998764 445554 66778876554332222333556899999998877653 33 566777654432 33333344
Q ss_pred ceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC------ceEEEEECC
Q 021319 193 GCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED------LFIDISNVH 263 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d------~~v~v~~~~ 263 (314)
......|+|+|+.++....+ ..|.+||+.... .+.+.. ...+...+|+|||++|+..+.+ ..+.+.++.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 56678899999998876544 258888875443 233322 2346778999999998876543 257777876
Q ss_pred CCCeEEEEeccCccceeEEcCC
Q 021319 264 TGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 264 ~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
.+.. ..+...+.+...+|+|-
T Consensus 413 g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCce-EEccCCCCccCcccCCC
Confidence 5443 45544455788899874
No 220
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=2.8e-15 Score=128.83 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=146.3
Q ss_pred cccEEEEEECC-CCCEEEEeeCCCcEEEeecCCCCCCc---eeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 021319 20 KKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (314)
Q Consensus 20 ~~~V~~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd 95 (314)
...|++++|.| |.++|+.++.||.|++|.+...+..+ .+...+.+|.+.|..+.|+|-..++|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 35799999998 45789999999999999997654332 334568899999999999999889999999999999999
Q ss_pred CCCCcee-eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-Eeeeecc--CcceeeEEeccCCCeEEEEcC--
Q 021319 96 ARSGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF--GYEVNEIAWNMTGEMFFLTTG-- 169 (314)
Q Consensus 96 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 169 (314)
+.++... +...+...++.++|+|+|+.+++.+.|+++++|..++.. ++...+. +..---+.|..+|.++++.+-
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 9987643 333456778899999999999999999999999998653 3333222 233445678888888877653
Q ss_pred --CceEEEEeCCCC--Cceeeeeeccc-ceEEEEECCCC-CEEEEeeCCCeEEEeeCC
Q 021319 170 --NGTVEVLTYPSL--RPLDTVVAHTA-GCYCIAIDPMG-RYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 170 --~g~~~~~~~~~~--~~~~~~~~~~~-~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~ 221 (314)
...+.+|+.+.. .++.+...... .+.--.+++|. .+|++|-.|..|.+|.+.
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 356666665432 23332211111 11111245554 457788889999999874
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-13 Score=121.33 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=133.6
Q ss_pred CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
..|.++|...................+|+|||+.|+..+.+ ..|.+||+.+.+...-..........+|+|+++.++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 45677777443322222334445678999999999876643 349999998765443222333456789999999887
Q ss_pred E-EcCCceEEEEeC--CCCCceeeeeecccceEEEEECCCCCEEEEee-CCCeEEEeeC--CCcEEEEEeeecccCeEEE
Q 021319 166 L-TTGNGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 166 ~-~~~~g~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~ 239 (314)
+ ...+|...+|.+ .... ...+..+........|+|||+.|+..+ .+|...+|.+ ..+.. ..+..........
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~ 333 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSP 333 (427)
T ss_pred EEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCce
Confidence 5 456666666654 3322 334444444456788999999877554 3466677755 33332 2222122223457
Q ss_pred EEccCCcEEEEecCCc---eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 240 SFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
+|||+|++|+..+.++ .|.+||+.+++.. .+.........+|+|++++|++++.++.
T Consensus 334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 334 RISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCC
Confidence 8999999999877654 6999999887654 3333334578899999999999987764
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.7e-14 Score=118.79 Aligned_cols=239 Identities=13% Similarity=0.179 Sum_probs=167.5
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE-ccCCCEEEEEeCCCcEEEEEccCCeE
Q 021319 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP 142 (314)
Q Consensus 64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~ 142 (314)
+|..+-+.+..+|++..++++|-.--.|++||+.+-.....-.+...++.+.. +.|-..++.-..|.+|.+...-- .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 67788889999999887888888899999999987665555555555555432 22323333333444444432111 1
Q ss_pred eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~ 222 (314)
..+...+.....+.++.-.--+++++....++.+++..++.+..+....++++++.+++-..+|++|+.+|.|..||.+.
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 12222233344455554444455566667788889998888888877778999999999999999999999999999987
Q ss_pred cEEEEEeee------cc-----cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--CccceeEEcCCCCee
Q 021319 223 MLCVRTFTK------LE-----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLL 289 (314)
Q Consensus 223 ~~~~~~~~~------~~-----~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~l 289 (314)
-..+.++.. +. -.|++++|+.+|-.++.|+.+|.+.++|+.+.+++....|. -+|..+.|.+.+..=
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 655444421 21 24899999999999999999999999999999998876664 479999999863222
Q ss_pred EEEecCCcccccccceEEeccc
Q 021319 290 AYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 290 a~~~~d~~~~~~~~~~~~~~~~ 311 (314)
...+-| .-.+|||+=
T Consensus 287 ~v~S~D-------k~~~kiWd~ 301 (703)
T KOG2321|consen 287 KVVSMD-------KRILKIWDE 301 (703)
T ss_pred eEEecc-------hHHhhhccc
Confidence 223333 347888873
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=3.9e-14 Score=119.64 Aligned_cols=201 Identities=19% Similarity=0.278 Sum_probs=137.7
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC
Q 021319 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG 109 (314)
Q Consensus 30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~ 109 (314)
+.+--++.|=.-|.|.+.+.......+....+..-.+..|+++.|-|.+...++.+-.+|.+.++|...- ...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGA 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccC
Confidence 4455577776677777776532111110000111124679999999988888888999999999987211 011
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188 (314)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 188 (314)
..-+....+++..+.+....+. .+..|+.+.. ....++..+|+++|.++++.+.||.++++++...+.+..+.
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 1111222344544444332111 1112222221 22368888999999999999999999999998776555555
Q ss_pred ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 243 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp 243 (314)
..-++..|++|+|||+++++|+.|..|.||.+...+.+..-.+|+..|+.|+|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 5557899999999999999999999999999999999988899999999999983
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=112.45 Aligned_cols=237 Identities=14% Similarity=0.120 Sum_probs=150.9
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC-----CC---CEEEEEeCCC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-----HA---DLIATASGDK 89 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~---~~l~s~~~D~ 89 (314)
.|...|+.++--|+ ..+.+=+.|+.+.+|++.-.. -..-|+-.++.+.|.+. .. .+++.-+...
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~-------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgs 125 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA-------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS 125 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcc-------eEEEeeeeccccccccceeccCCCcchhheecCCccc
Confidence 35778999988886 678999999999999986411 12234444555544432 10 1111111100
Q ss_pred c-EEEEeCCCCceeeeEE---e--cCceEEEEEcc-C--CCEEEEEeCCCcEEEEEccCCeEeee-----------eccC
Q 021319 90 T-VRLWDARSGKCSQQAE---L--SGENINITYKP-D--GTHIAVGNRDDELTILDVRKFKPIHR-----------RKFG 149 (314)
Q Consensus 90 ~-v~iwd~~~~~~~~~~~---~--~~~~~~~~~~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~~~~ 149 (314)
. +.+=|......+.... . .+...+..+.. . .-++++|..+|.+.+||+.+...+.. ..+.
T Consensus 126 de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~ 205 (323)
T KOG0322|consen 126 DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK 205 (323)
T ss_pred chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc
Confidence 0 1111111111111110 0 11122222111 2 23567889999999999987532211 2244
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCCCC---ce-eeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR---PL-DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~ 225 (314)
.++.++.+.+.-+.=+.++.+..+..|.+.... ++ .+......++..+.+-||++.+||++=|+.||||..+++..
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence 567777776555555566666777777664321 11 12223445688999999999999999999999999999999
Q ss_pred EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 226 VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
+..++.|...|.+++|+|+...+|+||+|..|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999985
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=2.2e-14 Score=113.85 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=153.8
Q ss_pred cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe---Eeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-C-
Q 021319 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L- 181 (314)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~- 181 (314)
...+.+.+|++|+..++++.....+.||.....+ +.+. .++...++.+.|.|..+.++.+..|.+-++|...+ .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4567789999999999999999999999877654 3444 35678899999999999999999999999998843 2
Q ss_pred -CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE----EEEeeecccCeEEEEEccCCcEEEEecCCce
Q 021319 182 -RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 182 -~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~ 256 (314)
++.-.+..++...+++.|+|.++.||+|+.-..|.||-.+...- .+.-+.+...|.+++|+|++-+|+.||.|++
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 35555667889999999999999999999999999998754311 1112345678999999999999999999999
Q ss_pred EEEEECC-----C-------------CCeEEEE-eccCccceeEEcCCCCeeEEEecCCccccc
Q 021319 257 IDISNVH-----T-------------GRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 301 (314)
Q Consensus 257 v~v~~~~-----~-------------~~~~~~~-~~~~~i~~v~~~~~~~~la~~~~d~~~~~~ 301 (314)
++|+..- + |.+..++ ...+-+..|.|+|+|+.||+.+.|...+..
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9998742 1 0111222 224568999999999999999999876643
No 226
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1e-13 Score=106.28 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=122.2
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCCe----------Eeee-eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319 112 INITYKPDGTHIAVGNRDDELTILDVRKFK----------PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (314)
.+-+++|.++++++|..+|.|.++.++... ++.. ..+..++..++|+ +.++..+++|.++-|.+..
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccCceEEEeeehh
Confidence 345688999999999999999999886421 1222 3345677888876 3455566679999998753
Q ss_pred CCc------eee--ee-----ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcE
Q 021319 181 LRP------LDT--VV-----AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY 247 (314)
Q Consensus 181 ~~~------~~~--~~-----~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 247 (314)
... +-. .. ..-.+|+++.++|...-++.++.|+.+.-||+++++...++.+|..-+.++.--.....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 211 111 11 12246899999998888888889999999999999999999999999999988667778
Q ss_pred EEEecCCceEEEEECCCCCeEEEEe
Q 021319 248 IASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
++||++||.+++||..+++.+..+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred eeecCCCccEEEEeccccceeEEec
Confidence 8899999999999999999887764
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4e-13 Score=118.78 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=143.6
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeC---CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~---D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
.+.++.|...+.+..|+|||+.|+..+. +..|.+|+++.+. . ..+..+.+.+....|+|++..++++.+.++
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---R--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---E--EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 3556778889999999999999888764 4689999986532 1 234456667788899998766666777776
Q ss_pred c--EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319 90 T--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 90 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
. |.+||+.++................|+|||+.|+..+. ++ .|.++|+...+...-...........|+|+++.+
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 6 56668887765443332333445889999998887663 33 4777787654432222223345567899999998
Q ss_pred EEEcCC---ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEeeCCCcEEEEEeeecccC
Q 021319 165 FLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP 235 (314)
Q Consensus 165 ~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~ 235 (314)
+....+ ..+.+++..... ...+. ....+....|+|||++++..+.+ ..+.++|+..... ..+. ....
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~ 424 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGD 424 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCC
Confidence 876532 356666654332 22222 22346678999999987765443 2577778765433 3333 2334
Q ss_pred eEEEEEcc
Q 021319 236 VRTISFSH 243 (314)
Q Consensus 236 v~~~~~sp 243 (314)
+..-+|+|
T Consensus 425 ~~~p~Wsp 432 (435)
T PRK05137 425 ASDPAWSP 432 (435)
T ss_pred ccCcccCC
Confidence 55667766
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=2.5e-13 Score=124.81 Aligned_cols=215 Identities=18% Similarity=0.247 Sum_probs=149.2
Q ss_pred eeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc-------eeeeEE-ecCceEEEEEccCCCEEEEEeCC
Q 021319 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-------CSQQAE-LSGENINITYKPDGTHIAVGNRD 129 (314)
Q Consensus 58 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d 129 (314)
....+..|+..|..++.++....+++|||.||+||+||.+.-. +..+.. .......+.+.+.+..+|+++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 3456778999999999998877899999999999999986422 222222 33455678888999999999999
Q ss_pred CcEEEEEccCCeE-------eeee---ccCcceeeEEeccC-CC-eEEEEcCCceEEEEeCCCCCceeeee--ecccceE
Q 021319 130 DELTILDVRKFKP-------IHRR---KFGYEVNEIAWNMT-GE-MFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCY 195 (314)
Q Consensus 130 ~~i~i~d~~~~~~-------~~~~---~~~~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~ 195 (314)
|.+.+.++..... .... +.+.-+..-++... +. .++.+...+.+..|+.........+. ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 9999998865211 0111 11122222333222 22 56777888999999987655443332 2345699
Q ss_pred EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEccCC---cEEEEec--CCceEEEEECCCCCeEE
Q 021319 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTG---DYIASAS--EDLFIDISNVHTGRTVH 269 (314)
Q Consensus 196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~sp~~---~~l~s~s--~d~~v~v~~~~~~~~~~ 269 (314)
+++.+|-+.++++|...|.+.+||++=...+.... .+..++..+..+|-. ...++++ ..+.|.+|++.+|..-.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999997554444332 334577777777653 4555554 46789999999985554
Q ss_pred EEe
Q 021319 270 QIP 272 (314)
Q Consensus 270 ~~~ 272 (314)
.+.
T Consensus 1280 vl~ 1282 (1431)
T KOG1240|consen 1280 VLW 1282 (1431)
T ss_pred EEE
Confidence 443
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=5.2e-12 Score=108.26 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=153.4
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
-..+.|+|||+++..++.|+.|.++|+.+.. .+. +++. ......+++++++..++++.-.++.+.++|..+.+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~--~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVA--TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEE--EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEE--EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 3457799999999999999999999997643 222 2332 2345778999987545556667999999999998887
Q ss_pred eeEEec--------CceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEe--eeeccCcceeeEEeccCCCeEEEE-cCC
Q 021319 103 QQAELS--------GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGEMFFLT-TGN 170 (314)
Q Consensus 103 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 170 (314)
+..... .....+..+|....+++.-. .+.+.+.|....+++ ..++.+.......|.|++++++++ ..+
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence 766543 23345666788886666555 477888887765544 344556667888999999987664 444
Q ss_pred ceEEEEeCCCCCceee-------------------------------------------------------eeecccceE
Q 021319 171 GTVEVLTYPSLRPLDT-------------------------------------------------------VVAHTAGCY 195 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~i~ 195 (314)
+.+.+++....+.... +..... ..
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-gl 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-GL 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-S-
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-cc
Confidence 5555555443221111 111111 13
Q ss_pred EEEECCCCCEEEEe----eCCCeEEEeeCCCcEEEEEeeecc-cCeEEEEEccCCcEEEEecCC--ceEEEEECCCCCeE
Q 021319 196 CIAIDPMGRYFAVG----SADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASED--LFIDISNVHTGRTV 268 (314)
Q Consensus 196 ~i~~~~~~~~l~t~----~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~d--~~v~v~~~~~~~~~ 268 (314)
-+..+|+++++.+. ...+.|.++|.++.+.++++.... ..+..+.|+++|+++..+..+ +.|.|+|..|.+.+
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 45669999999887 445799999999998877775332 248889999999977766554 47999999999998
Q ss_pred EEEe
Q 021319 269 HQIP 272 (314)
Q Consensus 269 ~~~~ 272 (314)
..++
T Consensus 353 ~~i~ 356 (369)
T PF02239_consen 353 KRIP 356 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 230
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=2.4e-15 Score=132.80 Aligned_cols=243 Identities=19% Similarity=0.284 Sum_probs=170.2
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v 91 (314)
+...+.||.+.|+.++.+....+++++|.|+.||+|.+... .+...+.||.++|++++|+|-. +.+.||++
T Consensus 224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~----~pvsvLrghtgavtaiafsP~~-----sss~dgt~ 294 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG----APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTC 294 (1113)
T ss_pred hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC----chHHHHhccccceeeeccCccc-----cCCCCCce
Confidence 34557899999999999999999999999999999988652 2333578999999999999852 78899999
Q ss_pred EEEeCCCCcee---eeEEe--cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-CeEE
Q 021319 92 RLWDARSGKCS---QQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFF 165 (314)
Q Consensus 92 ~iwd~~~~~~~---~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (314)
++||.+-.-.. ..... ......+.+...+.-+.+++.|+.-..|.+........ .+..+..+.+- ...+
T Consensus 295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~-----~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN-----LLIFVTRSSDLSSIVV 369 (1113)
T ss_pred EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc-----ceEEEeccccccccce
Confidence 99998711110 11111 12223455666677778888888776665432110000 00001111111 2223
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE-EEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
++-.+-.+.+|++..+.....+.+|...++.+.++|-+.. ..+++.||...|||+-.+..++.+......+...+||++
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 3333445667777777777778899999999999996654 558899999999999888777766655667888899999
Q ss_pred CcEEEEecCCceEEEEECCCCCeE
Q 021319 245 GDYIASASEDLFIDISNVHTGRTV 268 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~ 268 (314)
|..++....-|.+.+.....++..
T Consensus 450 gts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CceEecCCCCCceEEeccCCCccc
Confidence 999988777788888887665543
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=3.9e-11 Score=102.78 Aligned_cols=269 Identities=17% Similarity=0.267 Sum_probs=171.4
Q ss_pred EEEeeCC----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC----CCcEEEEeCCC--Cceee-
Q 021319 35 LASGSVD----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVRLWDARS--GKCSQ- 103 (314)
Q Consensus 35 l~s~~~D----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----D~~v~iwd~~~--~~~~~- 103 (314)
++.|++. +.|.+|.++... +................++++|++ ++|.+... ++.|..|.+.. +....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~-g~l~~~~~~~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEET-GTLTLVQTVAEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTT-TEEEEEEEEEESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCC-CCceEeeeecCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 3445554 688888885433 223222222233445668888875 56666665 57888887765 34332
Q ss_pred -eEE-ecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCC-eEeee---e-----------ccCcceeeEEeccCCCeEE
Q 021319 104 -QAE-LSGENINITYKPDGTHIAVGN-RDDELTILDVRKF-KPIHR---R-----------KFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 104 -~~~-~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~---~-----------~~~~~~~~~~~~~~~~~~~ 165 (314)
... .......++++|++++|+++. .++.+.++++... ..... . +......++.++|+++.++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 222 234456789999999998876 5888999998763 22111 1 1234567899999999777
Q ss_pred EE-cCCceEEEEeCCCCC-ce---eeee-ecccceEEEEECCCCCEEEE-eeCCCeEEEeeCC--Cc--EEEEEeeec--
Q 021319 166 LT-TGNGTVEVLTYPSLR-PL---DTVV-AHTAGCYCIAIDPMGRYFAV-GSADSLVSLWDIS--EM--LCVRTFTKL-- 232 (314)
Q Consensus 166 ~~-~~~g~~~~~~~~~~~-~~---~~~~-~~~~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~--~~--~~~~~~~~~-- 232 (314)
+. .+...+.+|++.... .+ ..+. ....++..++|+|+++++.+ .-.++.|.++++. ++ +.++.+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 65 466789999886544 12 2222 33456899999999998754 4557889999987 33 333433322
Q ss_pred ----ccCeEEEEEccCCcEEEEec-CCceEEEEECC--CCCe--EEEEecc-CccceeEEcCCCCeeEEEecCCcccccc
Q 021319 233 ----EWPVRTISFSHTGDYIASAS-EDLFIDISNVH--TGRT--VHQIPCR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD 302 (314)
Q Consensus 233 ----~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~~~--~~~~--~~~~~~~-~~i~~v~~~~~~~~la~~~~d~~~~~~~ 302 (314)
......|+++|||++|..+. .+..|.++++. +|++ +..++.. ...+.++++|++++|+.++.+.
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s------ 313 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS------ 313 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT------
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC------
Confidence 12477899999999988776 45779999983 3443 3344443 3488999999999999888664
Q ss_pred cceEEecccc
Q 021319 303 EGVFRIYGFE 312 (314)
Q Consensus 303 ~~~~~~~~~~ 312 (314)
+.+.+|.++
T Consensus 314 -~~v~vf~~d 322 (345)
T PF10282_consen 314 -NTVSVFDID 322 (345)
T ss_dssp -TEEEEEEEE
T ss_pred -CeEEEEEEe
Confidence 566666653
No 232
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.7e-13 Score=110.58 Aligned_cols=239 Identities=15% Similarity=0.179 Sum_probs=167.5
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC---CEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
.|++.|.|++|......+.+|+.+++|.+-|+++. ..+....|.+ .|+.+..+|.+ +.+++.+.++.|.+|
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-----qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-----QSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI 176 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----eeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence 35789999999999999999999999999999763 2334455665 89999999984 688999999999999
Q ss_pred eCCCCce-e---eeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccCCeE-eeee--c--c---CcceeeEEeccCC
Q 021319 95 DARSGKC-S---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKP-IHRR--K--F---GYEVNEIAWNMTG 161 (314)
Q Consensus 95 d~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~--~--~---~~~~~~~~~~~~~ 161 (314)
|.+...- . ...+.......+.|+|.. .+|++....+...+||.+..+. +.++ . . ..+-..+.|+|.|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 9986542 1 111222333457788865 4667788889999999987643 2111 1 1 1223678899999
Q ss_pred CeEEEEcCCceEEEEeCCCCC-ceeeeeeccc-------ceEEEEECCCCCEEEEeeCCCeEEEeeCCC-----c-----
Q 021319 162 EMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTA-------GCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M----- 223 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-------~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-----~----- 223 (314)
+++++.-..---.+|++-+.+ ++.++ .|.. .+.+++|--+.+ +++|+.+-.|++|.+.. +
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccC
Confidence 988754333223344443322 22222 1222 345666765444 89999999999998742 1
Q ss_pred -------------EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 224 -------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 224 -------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
+.+..+++|..-+..+.|+|...+|++.+-...+++|.-+.
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 11334678888899999999999999999999999997654
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-12 Score=105.29 Aligned_cols=223 Identities=16% Similarity=0.295 Sum_probs=138.4
Q ss_pred cccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCc----------eeeEEeecCCCCEEEEEEcCCCCCEEEEEe-C
Q 021319 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----------VKDIELRGHADSVDQLCWDPKHADLIATAS-G 87 (314)
Q Consensus 20 ~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~ 87 (314)
...|+|++|-|-+. .|+.|+ -+-|.+|..+...... ......+|| .+|+.+.|++++. .+++++ .
T Consensus 140 QrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccC
Confidence 45799999999864 455555 4668899875432211 112244566 6799999999865 455554 5
Q ss_pred CCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCCcEEEEEccCCe-EeeeeccCcceeeEEeccCCCeEE
Q 021319 88 DKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
|..|+|||..++.+.......... ..+.|+||+.++++++-|+..++|+..... ...-......+....|+|+|..++
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 789999999999887766444444 468899999999999999999999654332 222233344778888999998877
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~ 244 (314)
.+..... .++++.|+.....+- .++......+-|+........-...-.+..+++|.|.
T Consensus 297 f~~sgsp--------------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 297 FACSGSP--------------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred EEEcCCc--------------------eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 6654321 133444433221111 2222233334444322111100112346788999999
Q ss_pred CcEEEEecCC--------ceEEEEECCCC
Q 021319 245 GDYIASASED--------LFIDISNVHTG 265 (314)
Q Consensus 245 ~~~l~s~s~d--------~~v~v~~~~~~ 265 (314)
|.|||+-=+. ..|..||....
T Consensus 357 GeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 357 GEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 9999976432 23556665543
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.6e-13 Score=109.68 Aligned_cols=220 Identities=15% Similarity=0.200 Sum_probs=156.3
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEeCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR 97 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D--~~v~iwd~~ 97 (314)
.+.|..++.. ...|++|-.+|.+++|..........+...+..+ ..+..+--++..+.++++|+.. ..++|||+.
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 4444444422 3468888889999999987433212222334333 4456666677777888899999 899999998
Q ss_pred CCceeeeEE-ecC-------ce--EEEEEccC--CCEEEEEeCCCcEEEEEccCC-eEeeeecc-CcceeeEEeccCCCe
Q 021319 98 SGKCSQQAE-LSG-------EN--INITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHRRKF-GYEVNEIAWNMTGEM 163 (314)
Q Consensus 98 ~~~~~~~~~-~~~-------~~--~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 163 (314)
..+.+.+.. ... ++ ..+.|.+. ...+++++.-+.+++||.+.. +|+..+.. ...+.++...|.++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 775443321 111 11 24667777 789999999999999999854 34444332 456888889999999
Q ss_pred EEEEcCCceEEEEeCCCCCceee-eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s 242 (314)
++++...+.+..||....+.... +.+-.++|.++..+|..+++|+++-|..+||+|+.+.+.+... ......+.|-+.
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~ 340 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLR 340 (412)
T ss_pred EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEec
Confidence 99999999999999988775544 6677889999999999999999999999999999885443221 122334555444
Q ss_pred c
Q 021319 243 H 243 (314)
Q Consensus 243 p 243 (314)
+
T Consensus 341 ~ 341 (412)
T KOG3881|consen 341 D 341 (412)
T ss_pred C
Confidence 3
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=1.5e-10 Score=99.18 Aligned_cols=262 Identities=17% Similarity=0.234 Sum_probs=164.0
Q ss_pred ccEEEEEECCCCCEEEEeeC----CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319 21 KKVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~----D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~ 96 (314)
.....++++|++++|.++.. ++.|..|.++.........-+..........++.+|++..++++.-.+++|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567889999999888865 57999998876421111111222233344568888886545555556999999999
Q ss_pred CC-Cceeee---EE-----------ecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCe--E--ee--eeccCcceee
Q 021319 97 RS-GKCSQQ---AE-----------LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFK--P--IH--RRKFGYEVNE 154 (314)
Q Consensus 97 ~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~--~--~~--~~~~~~~~~~ 154 (314)
.. +..... .. ...+.-.+.++|+++++++... ...|.+|++.... . .. ....+...+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 443222 11 1123456889999998887654 4569999886543 2 22 2344566889
Q ss_pred EEeccCCCeEEEEc-CCceEEEEeCC--CC--Cceeeeeec------ccceEEEEECCCCCEEEEeeC-CCeEEEeeCCC
Q 021319 155 IAWNMTGEMFFLTT-GNGTVEVLTYP--SL--RPLDTVVAH------TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE 222 (314)
Q Consensus 155 ~~~~~~~~~~~~~~-~~g~~~~~~~~--~~--~~~~~~~~~------~~~i~~i~~~~~~~~l~t~~~-dg~i~vwd~~~ 222 (314)
++|+|+++.+++.. .++.+.++++. .. +.+..+... ......|+++|||++|.++.+ .+.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999998776654 57889998876 22 112222111 125788999999999877665 56899999932
Q ss_pred ----cEEEEEeeecccCeEEEEEccCCcEEEEecC-CceEEEEEC--CCCCeEEEEe--ccCccceeEE
Q 021319 223 ----MLCVRTFTKLEWPVRTISFSHTGDYIASASE-DLFIDISNV--HTGRTVHQIP--CRAAMNSVEW 282 (314)
Q Consensus 223 ----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-d~~v~v~~~--~~~~~~~~~~--~~~~i~~v~~ 282 (314)
...+..+.......+.++++|+|++|+.+.. ++.|.++++ .+|++..... .-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2444454443444789999999999998874 568888876 4666443321 2234556665
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.8e-12 Score=104.79 Aligned_cols=267 Identities=14% Similarity=0.207 Sum_probs=168.1
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC-
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS- 98 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~- 98 (314)
..++.++|++.-..++.+..|-+||+|+-.... .. .++ --...|.+++|-|.....|+.|. -+-|.+|....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt--~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~t 172 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PT--KLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRT 172 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC---Cc--eecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcc
Confidence 467889999866779999999999999865421 11 122 23456999999998877665554 46789996532
Q ss_pred C---cee----------eeEEecCceEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCe
Q 021319 99 G---KCS----------QQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 99 ~---~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (314)
. +.. .+...+..+.+|.|.+||..+++++. +..|.+||+.+.+.+.-. +....+..+.|+|+++.
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 1 110 11112234567999999999998765 556999999887654433 33456778999999999
Q ss_pred EEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEcc
Q 021319 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 243 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp 243 (314)
++++.-|+..++|...............+.+....|+|.|+.|.-.+.. .-++|.+ .|..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl-------------------~f~~ 312 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSL-------------------TFDG 312 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEE-------------------eecC
Confidence 9999999999999554332222222334578899999999876544322 2233332 2211
Q ss_pred CCcEEE-EecCCceEEEEECCCCCe-EEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 244 TGDYIA-SASEDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 244 ~~~~l~-s~s~d~~v~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
....+. .++.-...-+-|+..-.. ..+-.+.++.-+++|-|.|.+||+.=..++..+.-.+.+.+|+..+
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 111000 111111122222211000 0011135678899999999999988877776666677777877643
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=114.69 Aligned_cols=276 Identities=16% Similarity=0.225 Sum_probs=190.2
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC-----------ceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D 88 (314)
....+|++|+....+|++||.||.++|-.+.+.... ......+.||++.|..+.|+.+ .+.|.|...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCC
Confidence 446899999999999999999999999988653221 1112367899999999999976 4678888999
Q ss_pred CcEEEEeCCCCceeeeE-E--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 89 KTVRLWDARSGKCSQQA-E--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
|-|.+|-+-+|...... + .++...+++|+.||..++....||.+.+=.+...+.-.....+.....+.|+++...++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999998777543221 1 13345689999999999999999998887664433222222234566889999999999
Q ss_pred EEcCCceEEEEeCCCCC-------c-eee---eeecccceEEEEE--------CCCCCEEEEeeCCCeEEEeeCCCcEEE
Q 021319 166 LTTGNGTVEVLTYPSLR-------P-LDT---VVAHTAGCYCIAI--------DPMGRYFAVGSADSLVSLWDISEMLCV 226 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~-------~-~~~---~~~~~~~i~~i~~--------~~~~~~l~t~~~dg~i~vwd~~~~~~~ 226 (314)
++..+|...+++.+..- + +.. +...+..+-.+.| -|+...||++-.+|.+.+..-......
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 99999999999865310 1 100 0111122444444 368889999999999888865432211
Q ss_pred EEeeecccCeEEEEEccCCcEEEEecCCc---------eEEEEECCCCCeEEEEec-cCccceeEEcCCCCeeEEEecCC
Q 021319 227 RTFTKLEWPVRTISFSHTGDYIASASEDL---------FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~---------~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
-.+ .....+..+.|+|+|.+||.++.|. .|+.+. .-|+.+..++. +..|++++|--.+=.+|-+- |+
T Consensus 253 vv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-ds 329 (1189)
T KOG2041|consen 253 VVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DS 329 (1189)
T ss_pred eEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe-cc
Confidence 112 1224577889999999999988652 344443 35666666654 55799999987665555443 44
Q ss_pred ccc
Q 021319 297 NKY 299 (314)
Q Consensus 297 ~~~ 299 (314)
.+|
T Consensus 330 fiy 332 (1189)
T KOG2041|consen 330 FIY 332 (1189)
T ss_pred eEE
Confidence 444
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=9.7e-13 Score=119.19 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=147.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-----eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319 114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188 (314)
Q Consensus 114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 188 (314)
..+..+.+.+++...+..+.++|..........+.+.. ..-+..++..-++++++..+.+.+|.....++-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 44556778899999999999999987766555544322 1223334455567778888999999876433333577
Q ss_pred ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE-EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~ 267 (314)
+|++.|..+.++.||+++++.+.|.++|+|++.+.+... +..+|...|..++|.|+ .++|+++|.++++|+. .++.
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~ 249 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQ 249 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccce
Confidence 999999999999999999999999999999999887665 56689999999999998 9999999999999954 4455
Q ss_pred EEEEe-c-cCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 268 VHQIP-C-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 268 ~~~~~-~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
+..+. | ...|..++-++....+.|++.| |.+|+|++.
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D--------s~lk~~~l~ 288 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGND--------STLKLWDLN 288 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccC--------cchhhhhhh
Confidence 55543 2 4579999999999999999987 578888863
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=2e-11 Score=107.75 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=136.6
Q ss_pred CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
..|.++|....................|+|||+.|+....+ ..|.+||+.+.+...............|+|+++.++
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 35777887544433333333346678899999999877654 369999998765433333334456688999998776
Q ss_pred EE-cCCc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-CC--eEEEeeCCCcEEEEEeeecccCeEEE
Q 021319 166 LT-TGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 166 ~~-~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~ 239 (314)
.. ..++ .+++++..... ...+..+........|+|+|+.|+..+. ++ .|.++|+..+.. ..+..........
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence 54 3333 57777765543 2333334444456789999998775544 33 577778776543 3333344456678
Q ss_pred EEccCCcEEEEecCCc---eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 240 SFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d~---~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
+|+|+|++++.++.+. .|.++|..++.. ..+.........+|+|++++|++.+.+..
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 9999999999888775 789999887543 33333334567799999999988887653
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=8.1e-12 Score=100.49 Aligned_cols=244 Identities=17% Similarity=0.266 Sum_probs=158.3
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCce-eeEEeecCC------------CCEEEEEEcCCC-CCEEEEE
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHA------------DSVDQLCWDPKH-ADLIATA 85 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s~ 85 (314)
.+.|.+|.|...|.+|+||+.+|.|.++.-+....+.- -...++.|. ..|+.+.|.+++ ...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45799999999999999999999999996432211100 111222332 356778887654 3456678
Q ss_pred eCCCcEEEEeCCCCceee------------------eEE-------------------ecCceEEEEEccCCCEEEEEeC
Q 021319 86 SGDKTVRLWDARSGKCSQ------------------QAE-------------------LSGENINITYKPDGTHIAVGNR 128 (314)
Q Consensus 86 ~~D~~v~iwd~~~~~~~~------------------~~~-------------------~~~~~~~~~~~~~~~~l~~~~~ 128 (314)
..|++|++|-+....... ... +.-.+.++.++.|...++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999765321110 000 00122346667777666554 6
Q ss_pred CCcEEEEEccCCeEee---eecc------CcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCC------ceee------
Q 021319 129 DDELTILDVRKFKPIH---RRKF------GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLR------PLDT------ 186 (314)
Q Consensus 129 d~~i~i~d~~~~~~~~---~~~~------~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~------~~~~------ 186 (314)
|-.|.+|.+.-...-. .++. ..-+.+..|+|.. +.++-++..|++++.|++... .+..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7789999986543222 1221 1225566788865 567778889999999987321 1111
Q ss_pred ----eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC-CcEEEEEeeeccc---------------CeEEEEEccCCc
Q 021319 187 ----VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEW---------------PVRTISFSHTGD 246 (314)
Q Consensus 187 ----~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~---------------~v~~~~~sp~~~ 246 (314)
+...-..|..+.|+++|+++++-+- -+|++||+. ..+.+.+++-|.. .-..++|+-++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1112245788999999999987643 579999993 4555666655432 124578999999
Q ss_pred EEEEecCCceEEEEECCCC
Q 021319 247 YIASASEDLFIDISNVHTG 265 (314)
Q Consensus 247 ~l~s~s~d~~v~v~~~~~~ 265 (314)
+++|||-....++++...|
T Consensus 343 ~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEecccccceEEEecCCCC
Confidence 9999999999999996554
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.1e-11 Score=109.44 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=129.8
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCC---CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D---~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~ 89 (314)
.+.+..+...+.+..|+|||++|+.+..+ ..|++|+++.+. .. .+..+...+...+|+|++..++++.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCC
Confidence 34556677789999999999999887654 479999986532 11 23345566777899998765666666554
Q ss_pred --cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCeE
Q 021319 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (314)
Q Consensus 90 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
.|.+||+.++................|+|+++.|+..+. .+ .|.++|+...+...-...........|+|+++.+
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 588889887764443322222345689999998876654 33 4677777655433222233445677899999998
Q ss_pred EEEcCCc---eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC---eEEEeeC
Q 021319 165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDI 220 (314)
Q Consensus 165 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---~i~vwd~ 220 (314)
+....++ .+.+++...... ..+.. .......+|+|++++|+..+.++ .+.+.+.
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8877654 677777655332 22221 12234568999999888776654 3445453
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.9e-13 Score=114.84 Aligned_cols=170 Identities=22% Similarity=0.349 Sum_probs=125.8
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEcc--CCCEEEEEeCCCcEEEE
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTIL 135 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~ 135 (314)
.++.||.+-|++|.|+.+ +.+|+|||.|-.+.|||.-..+...... +..+++++.|.| ....+++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 478899999999999976 5799999999999999987666555443 245677888887 45688889999999999
Q ss_pred EccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC-CEEEEeeCCCe
Q 021319 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSL 214 (314)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~ 214 (314)
|+...+.-. ..+| ..++...+..|...+..|+.-|++ ..+-+++.||+
T Consensus 123 dl~~~~~~~-----------------------~d~~--------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 123 DLDSSKEGG-----------------------MDHG--------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred ecccccccc-----------------------cccC--------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 987543110 0011 112233455688888899999988 67889999999
Q ss_pred EEEeeCCCcEEE-------EE---eeecccCeEEEEEccCC-cEEEEecCCceEEEEE
Q 021319 215 VSLWDISEMLCV-------RT---FTKLEWPVRTISFSHTG-DYIASASEDLFIDISN 261 (314)
Q Consensus 215 i~vwd~~~~~~~-------~~---~~~~~~~v~~~~~sp~~-~~l~s~s~d~~v~v~~ 261 (314)
|+-+|++....- .. +...--...++..+|.. .+||.|+.|-..++||
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 999999864211 11 11111346788999975 6899999999999999
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=8.6e-10 Score=92.85 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=148.7
Q ss_pred CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEeCCCCceeeeEEecCce-
Q 021319 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN- 111 (314)
Q Consensus 42 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~D~~v~iwd~~~~~~~~~~~~~~~~- 111 (314)
++|.+.|.++.. +.. .+..-..+- .+ ++|+++.+.++.+ .+..|.+||..+.+....+......
T Consensus 27 ~~v~ViD~~~~~---v~g-~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGR---VLG-MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCE---EEE-EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 788898886532 222 122112222 23 7888776666677 6899999999999988777654332
Q ss_pred -------EEEEEccCCCEEEEEe-C-CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-C
Q 021319 112 -------INITYKPDGTHIAVGN-R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L 181 (314)
Q Consensus 112 -------~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 181 (314)
..++++|||++|++.. . +..+.+.|+.+.+.+..+..+....-...+... +.+-+.||......+.. .
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCC
Confidence 2688999999999776 3 678999999998888776653211111111111 11223333333322211 1
Q ss_pred Cc-eeeee-ecc------cceEEEEECC-CCCEEEEeeCCCeEEEeeCCCc-----EEEEEeeec----cc---CeEEEE
Q 021319 182 RP-LDTVV-AHT------AGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM-----LCVRTFTKL----EW---PVRTIS 240 (314)
Q Consensus 182 ~~-~~~~~-~~~------~~i~~i~~~~-~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~----~~---~v~~~~ 240 (314)
+. ..... .+. ... .+.+ +|+++.+... |.|.+.|+... .....+... .+ .+.-++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred ceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 10 00000 011 111 3345 8888877766 99999996432 222222111 11 223399
Q ss_pred EccCCcEEEEecC----------CceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeEEEe
Q 021319 241 FSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAG 293 (314)
Q Consensus 241 ~sp~~~~l~s~s~----------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la~~~ 293 (314)
++|+++.+..+.. ...|.++|..+++.+..++....+..++++|+++ .|.+.+
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 9999998887531 2579999999999999998888999999999999 665555
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.4e-11 Score=104.49 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=138.7
Q ss_pred eecCCCCEEEEEEcCCCCC--EEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CC--c--E
Q 021319 62 LRGHADSVDQLCWDPKHAD--LIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--E--L 132 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~--~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~--i 132 (314)
+.........-.|+|++.. +++....++ .|.+.++..++..+.....+......|+|||+.|+.... ++ . +
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 3334445566799999755 323444443 466668888876555555666667899999998886553 22 2 3
Q ss_pred EEEEccCC---eEeeeeccC-cceeeEEeccCCCeEEEEc-CCceEEEE--eCCC-CCceeeeeecccceEEEEECCCCC
Q 021319 133 TILDVRKF---KPIHRRKFG-YEVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPS-LRPLDTVVAHTAGCYCIAIDPMGR 204 (314)
Q Consensus 133 ~i~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~-~~~~~~~~~~~~~i~~i~~~~~~~ 204 (314)
..|++... ++....... .......|+|+|+.++... .+|...+| +... ......+..+...+....|+|||+
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 34565532 221111111 2235678999999777654 45544444 4332 122233333444567889999999
Q ss_pred EEEEeeCC---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC---CceEEEEECCCCCeEEEEeccCccc
Q 021319 205 YFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIPCRAAMN 278 (314)
Q Consensus 205 ~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---d~~v~v~~~~~~~~~~~~~~~~~i~ 278 (314)
.|+..+.+ ..|.+||+.+++... +......+....|+|||++|+..+. ...+.++++..++........+.+.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~ 418 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKR 418 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCccc
Confidence 88866543 369999998776543 3333345677899999998875433 3568888888776544444455678
Q ss_pred eeEEcCC
Q 021319 279 SVEWNPK 285 (314)
Q Consensus 279 ~v~~~~~ 285 (314)
..+|+|.
T Consensus 419 ~p~Ws~~ 425 (428)
T PRK01029 419 FPSWGAF 425 (428)
T ss_pred CceecCC
Confidence 8899984
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.7e-11 Score=106.37 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=124.2
Q ss_pred CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEE---EEEeCCC--cEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHI---AVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
..|.+.|...+..............-.|+|||+.+ ++...++ .|.+.++...+...-..........+|+|+|+.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 35666677655433322223334567899999753 2444444 477778776554333333334456789999988
Q ss_pred EEEEcC-Cc--eEEE--EeCCCC--Cceeeee-ecccceEEEEECCCCCEEEEee-CCCeEEEeeC--CC-cEEEEEeee
Q 021319 164 FFLTTG-NG--TVEV--LTYPSL--RPLDTVV-AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SE-MLCVRTFTK 231 (314)
Q Consensus 164 ~~~~~~-~g--~~~~--~~~~~~--~~~~~~~-~~~~~i~~i~~~~~~~~l~t~~-~dg~i~vwd~--~~-~~~~~~~~~ 231 (314)
++.... .| .+.+ |+.... .....+. .........+|+|||+.|+..+ .+|...+|.+ .. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 877653 23 3333 444321 1122222 2223345779999999877554 5675566644 31 223344444
Q ss_pred cccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 232 LEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
....+...+|||||+.|+..+.+ ..|.+||+.+++..........+....|+|++++|++...+
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence 44456778999999998876543 46899999887654322223457789999999999876654
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=108.35 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=130.9
Q ss_pred eeecccccEEEEEECCCCCEEEEeeC-CC--cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc-
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSV-DQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT- 90 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~-D~--~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~- 90 (314)
.+..+...+.+..|||||+.|+..+. ++ .|.+||+.... .. .+....+......|+|++..++++.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---RE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 34444566788999999999887654 33 46667765432 11 122222334467999987656666777776
Q ss_pred -EEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC-CCc--EEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319 91 -VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 91 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
|.++|+.+++...............|+||++.++..+. ++. +.++|+...+...-...+.......|+|+++.+++
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 66778887765443332333456889999998876553 344 55567665543221112222344689999998877
Q ss_pred EcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-C--eEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319 167 TTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISEMLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 167 ~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~ 240 (314)
... ++ .+.++++.+.+. ..+... .......|+|+|++++..+.+ | .+.+++. ++.....+......+...+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA 443 (448)
T ss_pred EEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc
Confidence 654 34 344456554432 222211 112234799999987765544 3 3666776 4444555554445566777
Q ss_pred Ecc
Q 021319 241 FSH 243 (314)
Q Consensus 241 ~sp 243 (314)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 877
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8.9e-11 Score=103.92 Aligned_cols=220 Identities=15% Similarity=0.240 Sum_probs=134.8
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEE-EeCCCc--EEEEE
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILD 136 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d 136 (314)
+..+...+....|+|++..++.+...++ .|.+||+.+++........+......|+|||+.|+. ...++. |.++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3455677888999998754444443343 577889988765443333333446789999998875 455564 77778
Q ss_pred ccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-C
Q 021319 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-D 212 (314)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-d 212 (314)
+.+.+...-...........|+|+++.+++... ++ .+..++....+.. .+..........+|+|+|++++..+. +
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecC
Confidence 776544322222234466789999998776653 33 4555565544422 22222222345689999998876654 3
Q ss_pred C--eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-c--eEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319 213 S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPC-RAAMNSVEWNPK 285 (314)
Q Consensus 213 g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~ 285 (314)
+ .|.++|+.++... .+..... ....+|+|+|++|+..+.+ + .+.+++. +|+..+.+.. .+.+...+|+|-
T Consensus 372 g~~~I~~~dl~~g~~~-~lt~~~~-d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 372 GKFNIARQDLETGAMQ-VLTSTRL-DESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceEEEEEECCCCCeE-EccCCCC-CCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 4 3555677666432 2222211 1234799999988876654 3 3666676 5666666653 356788899983
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.2e-10 Score=103.07 Aligned_cols=219 Identities=16% Similarity=0.234 Sum_probs=136.5
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCC--cEEEE
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDD--ELTIL 135 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~i~ 135 (314)
+..+...+....|+|++. .|+..+.+ ..|.+||+.++.........+......|+|||+.|+.. ..++ .|.++
T Consensus 194 l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 445677889999999865 55444432 36888999888755443334444468899999988754 4444 57888
Q ss_pred EccCCeEeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (314)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d 212 (314)
|+.+.+...-...........|+|+++.++.... +| .++.++....+.. .+..........+|+|+|+.++..+.+
T Consensus 273 d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 273 DLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred ECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEcc
Confidence 9877654322222223456789999988776553 33 5666666554422 222112223456899999998876653
Q ss_pred -C--eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319 213 -S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK 285 (314)
Q Consensus 213 -g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~ 285 (314)
+ .|.+||+.++... .+.... .....+|+|+|++++..+.+ ..+.+.+.. |...+.++. .+.+...+|+|-
T Consensus 352 ~~~~~l~~~dl~tg~~~-~lt~~~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVR-ILTDTS-LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEEEEEECCCCCEE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 3 4888898876542 232211 12245899999999877654 346666664 444444443 356788899884
No 249
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.6e-13 Score=112.65 Aligned_cols=250 Identities=17% Similarity=0.180 Sum_probs=186.7
Q ss_pred eecccccEEEEEECCCC--CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 021319 16 YTGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g--~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~i 93 (314)
..||...|..-.|-|.. ..|++++.||.||+=.+...+.- .....+..|.++|..++..|....-|.|++.|+.+.-
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~ 259 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH 259 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce-ecceecccccCccceeeecCCCCCcccccccccceee
Confidence 46899999998998874 46999999999999665432211 1123466799999999999998889999999999999
Q ss_pred EeCCCCceeeeEEe----cC---ceEEEEEccCCC-EEEEEeCCCcEEEEEccCCeEe------eee-------ccCcce
Q 021319 94 WDARSGKCSQQAEL----SG---ENINITYKPDGT-HIAVGNRDDELTILDVRKFKPI------HRR-------KFGYEV 152 (314)
Q Consensus 94 wd~~~~~~~~~~~~----~~---~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~~-------~~~~~~ 152 (314)
.|++.+.....+.. .. ....++..|-.. .+++++.|...++||.++.+.. ... .....+
T Consensus 260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I 339 (559)
T KOG1334|consen 260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI 339 (559)
T ss_pred eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence 99987754322211 11 223577777554 8899999999999998764322 111 123457
Q ss_pred eeEEeccCCCeEEEEcCCceEEEEeCCC--C----------Cceee-eeecccc--eEEEE-ECCCCCEEEEeeCCCeEE
Q 021319 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPS--L----------RPLDT-VVAHTAG--CYCIA-IDPMGRYFAVGSADSLVS 216 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~----------~~~~~-~~~~~~~--i~~i~-~~~~~~~l~t~~~dg~i~ 216 (314)
.+++|+.++.-++++..+-.++++.-.. + ..+.. +.+|... |..+- |-|...++++|+.=|.|.
T Consensus 340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence 8999998888888888888888884211 1 11222 5667643 44554 467778999998889999
Q ss_pred EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319 217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 266 (314)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~ 266 (314)
+|+-.+++.++.+++...-|+||.=+|--..|||.+-|.-|+||...+.+
T Consensus 420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 99999999888888877789999999999999999999999999875543
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-10 Score=103.56 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=130.2
Q ss_pred cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC---CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEE
Q 021319 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
.|.++|...+................|+|||+.|+..+.+ ..|.++|+.+.+...-...........|+|+|+.+++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 4677787655443333334455678999999998766543 3588889877654332222333456899999998775
Q ss_pred E-cCCc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-CCC--eEEEeeCCCcEEEEEeeecccCeEEEE
Q 021319 167 T-TGNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS--LVSLWDISEMLCVRTFTKLEWPVRTIS 240 (314)
Q Consensus 167 ~-~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~ 240 (314)
. ..+| .+++++....+. ..+..+........|+|||+.++..+ .+| .|.++|+.++...+ +..........+
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~ 337 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPR 337 (430)
T ss_pred EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceE
Confidence 4 3344 577777765442 33444444556778999999776554 344 47777776665332 221112234568
Q ss_pred EccCCcEEEEecCC-c--eEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 241 FSHTGDYIASASED-L--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 241 ~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
|+|+|++|+..+.+ + .+.++|+.+++. +.+..........|+|++.++++++.+.
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecC
Confidence 99999999877643 3 578889887754 3333333344679999999999888654
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=2e-09 Score=90.65 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=144.3
Q ss_pred ECCCCCEEEEeeC----------CCcEEEeecCCCCCCceeeEEeecC-----CCCEEEEEEcCCCCCEEEEEeC-CCcE
Q 021319 28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-DKTV 91 (314)
Q Consensus 28 ~s~~g~~l~s~~~----------D~~v~iw~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~-D~~v 91 (314)
+||||+.|..+.. +..|.+||..+.. .+..+.+..- ......++++|++..++++--. +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8999998777654 8899999997643 2222222211 1223467888986544444434 8999
Q ss_pred EEEeCCCCceeeeEEecCceEEEEE--------ccCCCEEEEEe-CCCcEEEEEccCCeEeeeec---cCcceeeEEecc
Q 021319 92 RLWDARSGKCSQQAELSGENINITY--------KPDGTHIAVGN-RDDELTILDVRKFKPIHRRK---FGYEVNEIAWNM 159 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~ 159 (314)
-+.|+.+++.+.+........-... +.||..+.... .+|.... ++ .++.... ..... .+.+
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~-~~vf~~~~~~v~~rP---~~~~ 203 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KP-TEVFHPEDEYLINHP---AYSN 203 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE---ee-eeeecCCccccccCC---ceEc
Confidence 9999999998887766443332222 23333332221 1222110 00 0110000 00001 2344
Q ss_pred -CCCeEEEEcCCceEEEEeCCCC-----Cceeeeee-------cccceEEEEECCCCCEEEEee----------CCCeEE
Q 021319 160 -TGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVA-------HTAGCYCIAIDPMGRYFAVGS----------ADSLVS 216 (314)
Q Consensus 160 -~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~-------~~~~i~~i~~~~~~~~l~t~~----------~dg~i~ 216 (314)
++..++++.+ |++.+.++... ++...+.. ..+...-++++++++.+.+.. ..+.|.
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 6777777777 99999995332 22222211 123344599999998877743 124799
Q ss_pred EeeCCCcEEEEEeeecccCeEEEEEccCCc-EEEEec-CCceEEEEECCCCCeEEEEe
Q 021319 217 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~d~~v~v~~~~~~~~~~~~~ 272 (314)
++|..+.+.+..+.. ...+..++++||++ +|++.. .++.|.+.|+.+++.+..+.
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999999999888754 44788999999999 777666 57889999999999998873
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.1e-10 Score=98.00 Aligned_cols=274 Identities=17% Similarity=0.211 Sum_probs=162.9
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEE-----EeCC-----CcE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT-----ASGD-----KTV 91 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~D-----~~v 91 (314)
..+..++|++|++++-+. +..++|++..... .+ +..-...+++|.|+|.+ +++.+ --.| -.+
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--~~----lt~~~~~~~~L~fSP~g-~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--VV----LCVELKKTYDLLFSPKG-NYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--EE----EEeccceeeeeeecccc-cccccccccccccCCCCCCCce
Confidence 367888999888777665 6789999876532 11 11122267889999875 34432 1122 345
Q ss_pred EEEeCCCCceeeeEEecCc-eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccC----------
Q 021319 92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT---------- 160 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---------- 160 (314)
++|++.++.....+..... .....|+.|..+. +--..+.+.++++..++......+...+.....+|.
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 6888877433322222111 1355566665432 223345677777766544333333333333444433
Q ss_pred ------------------------------------------CCeEEEE-c-----------CCceEEEEeCCCCCceee
Q 021319 161 ------------------------------------------GEMFFLT-T-----------GNGTVEVLTYPSLRPLDT 186 (314)
Q Consensus 161 ------------------------------------------~~~~~~~-~-----------~~g~~~~~~~~~~~~~~~ 186 (314)
+.-+++. . +..+++++........-.
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP 266 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence 3222111 0 012233333221111111
Q ss_pred eeecccceEEEEECCCCCEEEEe--eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEE
Q 021319 187 VVAHTAGCYCIAIDPMGRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISN 261 (314)
Q Consensus 187 ~~~~~~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~ 261 (314)
+ ...++|.++.|+|+++.+++. -.=.++.+||++ +..+.. -.+.+-+++-|+|.|++++-|+-+ |.+-|||
T Consensus 267 L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 267 L-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred c-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 1 135779999999999887654 334689999975 333333 345667889999999999998865 8899999
Q ss_pred CCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 262 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+.+-+.+..+...+ -+-++|+|||.+|.|+..-- +...++-+|||+.
T Consensus 343 v~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 343 VPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHY 389 (566)
T ss_pred ccchhhccccccCC-ceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEe
Confidence 99977776665433 34579999999999888542 2335667999986
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.8e-11 Score=101.85 Aligned_cols=187 Identities=23% Similarity=0.275 Sum_probs=146.2
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeEE----ecCceEEEEE--------------------ccCCCEEEEEeCCCc
Q 021319 76 PKHADLIATASGDKTVRLWDARSGKCSQQAE----LSGENINITY--------------------KPDGTHIAVGNRDDE 131 (314)
Q Consensus 76 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~l~~~~~d~~ 131 (314)
|....++|....||.+|+||..+++....+. ..+......| +.+...++.|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3345789999999999999998887654432 1222222222 234567888999999
Q ss_pred EEEEEccCCeEeeee---ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE
Q 021319 132 LTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (314)
Q Consensus 132 i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t 208 (314)
|.+++....+.-.+. .+...+.++.++.+-..+.+++.+..+..|.....+.+.....-...+.+++++||+.++++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887765443 35567888888888899999999999999999888777777777778899999999999998
Q ss_pred eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-----CcEEEE-ecCCceEEEEECCC
Q 021319 209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GDYIAS-ASEDLFIDISNVHT 264 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s-~s~d~~v~v~~~~~ 264 (314)
++. .|++||+++.+.+.+|++|..+|++++|.-+ |.++.+ +..+..+.+|-+..
T Consensus 162 as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 ASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 864 5999999999999999999999999999877 566554 45566677776544
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=3e-11 Score=97.26 Aligned_cols=247 Identities=16% Similarity=0.203 Sum_probs=175.0
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
.+.+.||.+.|++...-|-.+-+++.+.|.++|||--.... ..-+.+. .....++.++.+++. ...|+.|-..|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-q~wpsI~-~~mP~~~~~~~y~~e-~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-QYWPSIY-HYMPSPCSAMEYVSE-SRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-ccCchhh-hhCCCCceEeeeecc-ceEEEEEEecceEE
Confidence 35578999999999888888899999999999999432211 1112221 123456788888875 45777888888888
Q ss_pred EEeCCCC----ceeeeE-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 93 LWDARSG----KCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 93 iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
-+.+... ...+.. ........+-|+....++++.+.|..+.....+..+.+..+..........+... +.+++
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence 7754321 111111 1223445566777788999999998888777776665544432222222222111 55666
Q ss_pred cCCceEEEEeCC--CCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccC
Q 021319 168 TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHT 244 (314)
Q Consensus 168 ~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~ 244 (314)
...|.+....+. ...++..+.+|...+++++|++..+.|.+|..|..+.+||+--.+ ....+.+|...|..++.-+-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 677777776653 445677788999999999999999999999999999999996433 23455678888999988888
Q ss_pred CcEEEEecCCceEEEEECCC
Q 021319 245 GDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~ 264 (314)
-+.|.+++.||.|-+|+...
T Consensus 252 t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred heeeeeccCCCeEEEEeccc
Confidence 99999999999999999764
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.7e-10 Score=104.96 Aligned_cols=117 Identities=23% Similarity=0.310 Sum_probs=96.3
Q ss_pred eeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 021319 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (314)
Q Consensus 15 ~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw 94 (314)
.+.||.+.|.++.|+-||.+++|+|.|.++|+|++++.... .....+|+..|.++++.|+ .++|++.|.+.++|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN---RIITVGEDCTCRVW 243 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc---eeEEeccceEEEEE
Confidence 47899999999999999999999999999999999875432 2356799999999999985 78999999999999
Q ss_pred eCCCCceeeeE--EecCceEEEEEccCCCEEEEEeCCCcEEEEEcc
Q 021319 95 DARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (314)
Q Consensus 95 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (314)
+.+..+.. .+ .....+..+...+....+++++.|+.+++||+.
T Consensus 244 ~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 244 GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 76533322 22 123345678888888899999999999999975
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.4e-12 Score=108.76 Aligned_cols=288 Identities=17% Similarity=0.262 Sum_probs=191.5
Q ss_pred ccceeeeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc---eeeEEeecCCCCEEEEEEcCCCC
Q 021319 3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHA 79 (314)
Q Consensus 3 ~~~~~~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~ 79 (314)
..+..|+.+....+.||+..|+.+.--.+.+-+++++.|++|++|.+.+...+. .....+..|+.+|.++.|-.+ .
T Consensus 718 t~~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-l 796 (1034)
T KOG4190|consen 718 TDNLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-L 796 (1034)
T ss_pred CcccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-c
Confidence 456778888888999999999999877777889999999999999987644322 245567899999999998764 3
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEEe---cCc--eEEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeeeecc-----
Q 021319 80 DLIATASGDKTVRLWDARSGKCSQQAEL---SGE--NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKF----- 148 (314)
Q Consensus 80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~----- 148 (314)
..+ ++.|+-|.+||.--++...+... ++. .+.+-=+-+...+..+ +...+++++|.|........+.
T Consensus 797 r~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 797 RSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred cee--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 355 46789999999877765543321 122 2222222244445444 7788999999988765544332
Q ss_pred -CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEE-eeCCCcEEE
Q 021319 149 -GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL-WDISEMLCV 226 (314)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~v-wd~~~~~~~ 226 (314)
...+++++..+.|+.++++..+|.+.+.+.+.++.+......+-....++ .|..+.++....|.++.+ |...++...
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 24578888899999999999999999999888776655543332222232 356677888888888888 887776555
Q ss_pred EEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCC---CeEEEEe---ccCccceeEEcCCCCeeEEEecCC
Q 021319 227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTG---RTVHQIP---CRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~---~~~~~~~---~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
.+.+....+..- .-.-|.-|+++.....+.||- .... ..+.++. ..+..++++--|-+.-+..|++.+
T Consensus 954 ~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 954 LQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred eccCCCCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 444433222110 112366677777777777773 2111 1122222 356778888888665555566543
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=7.9e-10 Score=94.47 Aligned_cols=275 Identities=18% Similarity=0.276 Sum_probs=172.5
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC-----------CCcE
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV 91 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----------D~~v 91 (314)
=+-+.|||-|.+|+|=-.-| |.+|.=+.. ..+.-..|.+ |.-+.|+|.. .+|+|=+. ...+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f-----~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESF-----DRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccH-----HHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceE
Confidence 35789999999999987655 779953221 1111224655 7788999975 57777654 2688
Q ss_pred EEEeCCCCceeeeEEec-CceE---EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEE
Q 021319 92 RLWDARSGKCSQQAELS-GENI---NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 92 ~iwd~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (314)
.|||+.+|...+.+..- +... -..|+.|++++|.-.. .+|.|++..+..++..... -..+....|+|.++.++.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999999877766542 2211 3679999999987655 6799999877665543222 134677789999887765
Q ss_pred EcC-----CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC-------CC---eEEEeeCCCcEEEEEeee
Q 021319 167 TTG-----NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-------DS---LVSLWDISEMLCVRTFTK 231 (314)
Q Consensus 167 ~~~-----~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~-------dg---~i~vwd~~~~~~~~~~~~ 231 (314)
-.. ..++.+...++.+.+++...+.-.-..+.|..+|.+|+.--. .| .+.|+.++.-...-....
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 432 235555666666655554444444455678888888874311 11 233444432221111112
Q ss_pred cccCeEEEEEccCCcEEEEecCC---ceEEEEECCC-CC---eEEEEeccCccceeEEcCCCCeeEEEecCCcccccccc
Q 021319 232 LEWPVRTISFSHTGDYIASASED---LFIDISNVHT-GR---TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 304 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~-~~---~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~ 304 (314)
....|...+|-|.|..+++-+.. ..+.+|.+.+ +. ++..+. +...+.|.|+|.|.+++.+..-.. .|
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~-----~g 517 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSR-----RG 517 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEeccc-----cc
Confidence 34568888999999887765543 5678887763 22 223332 356899999999999988775432 24
Q ss_pred eEEecccc
Q 021319 305 VFRIYGFE 312 (314)
Q Consensus 305 ~~~~~~~~ 312 (314)
.+.-|+..
T Consensus 518 ~l~F~D~~ 525 (698)
T KOG2314|consen 518 DLEFYDTD 525 (698)
T ss_pred ceEEEecc
Confidence 55555543
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6.3e-10 Score=95.08 Aligned_cols=250 Identities=16% Similarity=0.292 Sum_probs=164.1
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC-CCEEE-----EEeCCCcEEEEeCC
Q 021319 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIA-----TASGDKTVRLWDAR 97 (314)
Q Consensus 24 ~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~-----s~~~D~~v~iwd~~ 97 (314)
.+.+|++|..+. +=-..+.|.+|+.... ......+ |...|..+.++|.. ...++ +.|.-..||||-..
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f---~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSF---KTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCc---cceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 477888876532 2223457899987652 2233333 56678888888862 33333 35667889999765
Q ss_pred CCceee----eEEecCceEEEEEccCCCEEE-EEe--CCC---------cEEEEEccCCeEeeeeccCcceeeEEeccCC
Q 021319 98 SGKCSQ----QAELSGENINITYKPDGTHIA-VGN--RDD---------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (314)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~-~~~--~d~---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
...... .-.+....+.+.|++-|.-|. +.+ -|. ++.++++.............++.++.|++.+
T Consensus 203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSG 282 (566)
T ss_pred cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCC
Confidence 322211 112345566788887766433 222 232 5677776644444444446789999999999
Q ss_pred CeEEEEcC--CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCCcEEEEEeeecccCe
Q 021319 162 EMFFLTTG--NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPV 236 (314)
Q Consensus 162 ~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v 236 (314)
..|++..+ ...+.+++++. .++..+ -+++=+++-|+|.|++++.++-+ |.|-+||+.+.+++..+... ..
T Consensus 283 ~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~t 357 (566)
T KOG2315|consen 283 REFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NT 357 (566)
T ss_pred CEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--Cc
Confidence 88877654 46777787643 223222 23445788999999998877765 78999999998887776543 34
Q ss_pred EEEEEccCCcEEEEecC------CceEEEEECCCCCeEEEEeccCccceeEEcCC
Q 021319 237 RTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~ 285 (314)
.-+.|+|||++++|++. |..++||++ +|+++++..-......+.|-|-
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence 56789999999999976 677899987 6677655332226788888874
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=4.9e-08 Score=79.75 Aligned_cols=264 Identities=15% Similarity=0.236 Sum_probs=170.1
Q ss_pred CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEeC--CCCceeee--EEecCc-eE
Q 021319 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDA--RSGKCSQQ--AELSGE-NI 112 (314)
Q Consensus 41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~--~~~~~~~~--~~~~~~-~~ 112 (314)
++-|.+|++++... .....++-.+...++-|+|+|+. +.|.++-. ++.|--+.+ ++|+.... ....+. ..
T Consensus 15 s~gI~v~~ld~~~g-~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTG-ELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCccc-ccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 57899999985432 33333455667778889999875 46666654 466765544 44664432 223333 36
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEEccCC-e---EeeeeccCc----------ceeeEEeccCCCeEEEEc-CCceEEEE
Q 021319 113 NITYKPDGTHIAVGN-RDDELTILDVRKF-K---PIHRRKFGY----------EVNEIAWNMTGEMFFLTT-GNGTVEVL 176 (314)
Q Consensus 113 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~---~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~g~~~~~ 176 (314)
-++.++++++|+++. ..+.|.++-++.. . ++...++.. .+....+.|+++++++.. +-.++.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 688999999988765 4667888877542 1 111222211 256778899998887764 55788889
Q ss_pred eCCCCCc--eeee-eecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCc----EEEEEeee----c--ccCeEEEEEc
Q 021319 177 TYPSLRP--LDTV-VAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEM----LCVRTFTK----L--EWPVRTISFS 242 (314)
Q Consensus 177 ~~~~~~~--~~~~-~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~----~~~~~~~~----~--~~~v~~~~~s 242 (314)
++...+. .... ..-..+...|.|+|++++.. +.-.+++|.+|..... .+++.+.. + .....+|..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 8874432 1111 12345689999999999865 5556899999998763 22333221 1 1246778999
Q ss_pred cCCcEEEEecC-CceEEEEECCC-CCeEEEE---eccC-ccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 243 HTGDYIASASE-DLFIDISNVHT-GRTVHQI---PCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 243 p~~~~l~s~s~-d~~v~v~~~~~-~~~~~~~---~~~~-~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|+|++|..... ...|.++.+.. +..+... +..+ .-+...|+|++++|+.++.+. +.+.+|..++
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~ 322 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-------DNITVFERDK 322 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-------CcEEEEEEcC
Confidence 99999997753 23677777753 2333222 2223 478999999999999999876 4566665543
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=2.3e-08 Score=96.84 Aligned_cols=241 Identities=9% Similarity=0.052 Sum_probs=155.6
Q ss_pred EEEEECCC-CCEEEEeeCCCcEEEeecCCCCCCceeeEEeec------------CCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------HADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 24 ~~v~~s~~-g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
..++++++ +..+++-..++.|++||.+.. ........+ +-.....++++++++.+.++-.....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46778775 567777778889999987531 111111001 11235678888875434455555678
Q ss_pred EEEEeCCCCceeeeEEe-----------------cCceEEEEEcc-CCCEEEEEeCCCcEEEEEccCCeEeeee------
Q 021319 91 VRLWDARSGKCSQQAEL-----------------SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR------ 146 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~------ 146 (314)
|+++|..++........ -.....++++| ++..+++...++.|.+||........-.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99999877654221110 11234688898 4555566677888999998665322100
Q ss_pred ---------ccCcceeeEEeccCCC-eEEEEcCCceEEEEeCCCCCceee-------------ee--------ecccceE
Q 021319 147 ---------KFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDT-------------VV--------AHTAGCY 195 (314)
Q Consensus 147 ---------~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~-------------~~--------~~~~~i~ 195 (314)
........+++++++. .+++-..++.+++|+......... +- ..-..+.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0012345688999988 555666789999999765331100 00 0011356
Q ss_pred EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee-------------cccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-------------LEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
.++++++|+++++-..++.|++||..++........ .-.....++++|+|+++++-+.++.|++||.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 899999999888888899999999987765432210 0013567999999999999999999999999
Q ss_pred CCCCe
Q 021319 263 HTGRT 267 (314)
Q Consensus 263 ~~~~~ 267 (314)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4e-10 Score=96.78 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=133.3
Q ss_pred cCCCEEEEEeCCCcEEEEEccCCeEeeeecc----CcceeeEEec--------------------cCCCeEEEEcCCceE
Q 021319 118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKF----GYEVNEIAWN--------------------MTGEMFFLTTGNGTV 173 (314)
Q Consensus 118 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~~~~~~~g~~ 173 (314)
|...++|....||.+++||..+.+....+.. .....+..|. .+...++.+...|.+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4566889999999999999987765433321 1222233331 223467788889999
Q ss_pred EEEeCCCCCceeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319 174 EVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 174 ~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
.+|+....+....+. .|-+.++++.++.+-..|.+++.|+.+..|+......+...+...-.+.+++.+||+.+|++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999987766554443 688899999999999999999999999999999988888887777789999999999999999
Q ss_pred cCCceEEEEECCCCCeEEEEec-cCccceeEEcCC
Q 021319 252 SEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK 285 (314)
Q Consensus 252 s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~~~ 285 (314)
|.. |.+||..+++.+..+.+ .++|+++.|..+
T Consensus 163 s~~--ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 163 SRQ--IKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred cce--EEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 876 99999999999999874 678999999887
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.3e-09 Score=86.30 Aligned_cols=164 Identities=15% Similarity=0.226 Sum_probs=121.7
Q ss_pred EEEEEeCCCcEEEEEccCCe------EeeeeccCc-ceeeEEeccCCCeEEEEcCCceEEEEeCCCC--Cceeeeeeccc
Q 021319 122 HIAVGNRDDELTILDVRKFK------PIHRRKFGY-EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTA 192 (314)
Q Consensus 122 ~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~ 192 (314)
.++.....|.|.++...... ++...+... ..-++.|++.+..++++..+|.+.+...... +..+....|..
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 34555667777777543221 111122221 2556788999999999999999996655433 34457789999
Q ss_pred ceEEEEECCC-CCEEEEeeCCCeEEEeeCC-CcEEEEE-eeecccCeEEEEEcc-CCcEEEEecCCceEEEEECC-CCCe
Q 021319 193 GCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EMLCVRT-FTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVH-TGRT 267 (314)
Q Consensus 193 ~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~-~~~~ 267 (314)
+++...|+.. .+.+.+|+.|+.+..||++ ...++.. -+.|...|.+|.-+| .+.+++||+-|-.|++||.+ -+++
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 9999999764 4688899999999999998 4444433 456888899998884 57899999999999999998 5788
Q ss_pred EEEEeccCccceeEEcCC
Q 021319 268 VHQIPCRAAMNSVEWNPK 285 (314)
Q Consensus 268 ~~~~~~~~~i~~v~~~~~ 285 (314)
+..-+..+.|..+.++|.
T Consensus 247 l~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 247 LFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred cccCccccceEEEEecch
Confidence 877667788999999994
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=2.9e-08 Score=96.10 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=150.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec---------------CceEEEEEccCCCEEEEEe-CCCcEE
Q 021319 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS---------------GENINITYKPDGTHIAVGN-RDDELT 133 (314)
Q Consensus 70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~-~d~~i~ 133 (314)
..+++++.++.++++-+..+.|+++|... ......... ..+..+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778776667888888899999999864 433222110 1235688888888776654 456788
Q ss_pred EEEccCCeEeeeec-----------------cCcceeeEEecc-CCCeEEEEcCCceEEEEeCCCCCceeeeee------
Q 021319 134 ILDVRKFKPIHRRK-----------------FGYEVNEIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVA------ 189 (314)
Q Consensus 134 i~d~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------ 189 (314)
.+|+.+.....-.. .......+++++ ++..+++...++.+++|+...... ..+.+
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-RVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-EEEecCCcccc
Confidence 88886643211000 011345788888 566667777888999888754321 11111
Q ss_pred ---------cccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEe-------------eec--------ccCeEE
Q 021319 190 ---------HTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTF-------------TKL--------EWPVRT 238 (314)
Q Consensus 190 ---------~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~-------------~~~--------~~~v~~ 238 (314)
.-..+..++++|+++.|+ +-..++.|++||+.++...... ... -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 112456799999998554 4455689999999765421110 000 012357
Q ss_pred EEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--------------CccceeEEcCCCCeeEEEecCCcccccccc
Q 021319 239 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGDDKNKYQADEG 304 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--------------~~i~~v~~~~~~~~la~~~~d~~~~~~~~~ 304 (314)
++++|+|.++++-+.++.|++||..++......... .....|+++|+++++++-+.+ +
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--------n 880 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--------S 880 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--------C
Confidence 899999999999999999999999887655332211 146689999999877655433 5
Q ss_pred eEEecccc
Q 021319 305 VFRIYGFE 312 (314)
Q Consensus 305 ~~~~~~~~ 312 (314)
.|++|+++
T Consensus 881 ~Irvid~~ 888 (1057)
T PLN02919 881 LIRYLDLN 888 (1057)
T ss_pred EEEEEECC
Confidence 78888774
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=7.1e-11 Score=112.77 Aligned_cols=197 Identities=17% Similarity=0.277 Sum_probs=144.3
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec--CceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRK 139 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (314)
.+.+-..|.++.-+|... +-+||+.||.|++|....++.+...... .....+.|+.+|+.+.++..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 444556788888888765 5569999999999998877765544333 334468899999999999999999999987
Q ss_pred CeEeeeec-cCcceeeEEeccCCCeEEEE---cCCceEEEEeCC--CCCceeeeeecccceEEEEECCCCCEEEEeeCCC
Q 021319 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLT---TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (314)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg 213 (314)
+++....+ +.....+..|-. ..++.+ ..++++.+||.. .....- -..|.++++++++-|.-+.|++|+++|
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcceEEEecCCcC
Confidence 44443332 233334443322 333332 356788888852 222221 268999999999999999999999999
Q ss_pred eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319 214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~ 273 (314)
.|++||++..+.+++++. +. .-.++++|+..|.++||++..-..++.++.
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999998776666543 33 568899999999999999988777776653
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=3.1e-07 Score=75.12 Aligned_cols=264 Identities=17% Similarity=0.222 Sum_probs=167.5
Q ss_pred eecccccEEEEEECCCCCEEEEeeC---CCcEEEeecCCCCCCceee---EEeecCCCCEEEEEEcCCCCCEEEEEeC-C
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKD---IELRGHADSVDQLCWDPKHADLIATASG-D 88 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~---D~~v~iw~~~~~~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~-D 88 (314)
+-.+.+..+-|+|+|++++|.++-. +|.|-.|.++... +.... ..+.|+ +-.-++.++++ ++++++.- -
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~--~p~yvsvd~~g-~~vf~AnY~~ 110 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGS--PPCYVSVDEDG-RFVFVANYHS 110 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCC--CCeEEEECCCC-CEEEEEEccC
Confidence 4456778889999999999888753 5788888887532 12211 122222 22556778765 46655544 5
Q ss_pred CcEEEEeCCC-Ccee---eeEEecCc----------eEEEEEccCCCEEEEEeC-CCcEEEEEccCCeEee----eeccC
Q 021319 89 KTVRLWDARS-GKCS---QQAELSGE----------NINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH----RRKFG 149 (314)
Q Consensus 89 ~~v~iwd~~~-~~~~---~~~~~~~~----------~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~ 149 (314)
+.|.++-++. |... ......+. .-...+.|++++|++... ...|.+|++...+... ..+.+
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 8899998755 3321 22222111 234568999999887653 4569999988554322 23445
Q ss_pred cceeeEEeccCCCeEEEEc-CCceEEEEeCCCC-Cceeeeee---------cccceEEEEECCCCCEEEEeeCC-CeEEE
Q 021319 150 YEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSL-RPLDTVVA---------HTAGCYCIAIDPMGRYFAVGSAD-SLVSL 217 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~---------~~~~i~~i~~~~~~~~l~t~~~d-g~i~v 217 (314)
.-.+.++|+|++++..+.+ -+++|.+|.+... ..+..++. .....-+|.++++|++|.++.+- ..|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 6678999999999877665 4889999987653 22222221 12346789999999999977653 47888
Q ss_pred eeCCCc-EEEE---EeeecccCeEEEEEccCCcEEEEecCCc-eEEEEEC--CCCCeEEEE--eccCccceeEEc
Q 021319 218 WDISEM-LCVR---TFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNV--HTGRTVHQI--PCRAAMNSVEWN 283 (314)
Q Consensus 218 wd~~~~-~~~~---~~~~~~~~v~~~~~sp~~~~l~s~s~d~-~v~v~~~--~~~~~~~~~--~~~~~i~~v~~~ 283 (314)
|.+... ..+. ....+....+...|+|++++|+.+.+++ .+.++.. .+|++-... .......||.|.
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 888643 1122 2222334468899999999999998763 4777755 456543222 123355677765
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=3.1e-08 Score=86.74 Aligned_cols=201 Identities=9% Similarity=-0.029 Sum_probs=122.9
Q ss_pred cEEEEeCCCCceeeeEEecCceEEEEEccCCCE-EEEEeC---CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTH-IAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.|.+-|..... .+.....+......|+|||+. ++..+. ...|.++|+.+.+...-...........|+|+|..++
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 44444554332 232323345567889999985 554333 3458888987765544333334455678999998776
Q ss_pred EEc---CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-CCC--eEEEeeCCCcEEEEEeeecccCeEEE
Q 021319 166 LTT---GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS--LVSLWDISEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 166 ~~~---~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~ 239 (314)
... .+..+.+++....+ ...+..+........|+|||+.|+-.+ ..+ .|.+.|+..+...+....... ..
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~ 324 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NS 324 (419)
T ss_pred EEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---Cc
Confidence 543 23566666765544 233333333234557999998766444 344 577777776654332211111 24
Q ss_pred EEccCCcEEEEecCC---------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 240 SFSHTGDYIASASED---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d---------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
.|||+|++|+..+.. ..|.+.|+.++.. +.+..........|+|||.+|++...++
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEccC
Confidence 899999998866543 3678888877754 4444333445689999999999888654
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1.5e-09 Score=87.62 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=164.0
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC-CCCceeeeE--EecCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA-RSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (314)
.++||.+.|++...-|.+. -+++.+.|.++|+|-- +.++..... ........+.+.++...|++|-..+++.-+.+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 5789999999988888764 5679999999999953 344433322 23455667889999999999999999887765
Q ss_pred cC----CeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC
Q 021319 138 RK----FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (314)
Q Consensus 138 ~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d 212 (314)
.. ....+.. .+...+..+.|+.....++..+.|-.+..--.+....+..+.. ....+++.++- .+...|...
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~--~~~fvGd~~ 174 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA--LYAFVGDHS 174 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee--EEEEecccc
Confidence 32 2222221 2334566777777777777776665443333333333322211 11112222222 266778888
Q ss_pred CeEEEeeCCC--cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC--CCeEEEEeccCccceeEEcCCCCe
Q 021319 213 SLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT--GRTVHQIPCRAAMNSVEWNPKYNL 288 (314)
Q Consensus 213 g~i~vwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~ 288 (314)
|.|..-.+.. ...+.++.+|..++.+++|.|..+.|.+++.|..+.+||+.- +....-..+...|..+..-+.-+.
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 8877776643 445678889999999999999999999999999999999853 444444455667888877777788
Q ss_pred eEEEecCCcccccccceEEeccccC
Q 021319 289 LAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 289 la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
|.+++.|+ -+-+|+.+.
T Consensus 255 l~S~~edg--------~i~~w~mn~ 271 (404)
T KOG1409|consen 255 LISCGEDG--------GIVVWNMNV 271 (404)
T ss_pred eeeccCCC--------eEEEEeccc
Confidence 88999874 566777653
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=8.7e-10 Score=87.18 Aligned_cols=185 Identities=22% Similarity=0.214 Sum_probs=123.3
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-CCce
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKC 101 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~ 101 (314)
-.++.|++.+..++++..+|.+.+-+..... .......+.|.-+..-+.|+..+++++.+||.|+.+.-||+| .+.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 3467899999999999999999844332111 111235678999999999998888999999999999999998 3444
Q ss_pred eee--EEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEcc-CCeEeeeeccCcceeeEEeccCCC--eEEEEcCCceEEE
Q 021319 102 SQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTGE--MFFLTTGNGTVEV 175 (314)
Q Consensus 102 ~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 175 (314)
+.. ......+.++.-+ |++.++++|+.|..|.+||.| ..+|+.....+..+.-+.++|... .++++..+| ..+
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki 280 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKI 280 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence 332 2233445555554 467899999999999999999 567888777777888888888654 222222333 233
Q ss_pred EeCCC--CC---ceeeeeecccceEEEEECCCCCEEEEee
Q 021319 176 LTYPS--LR---PLDTVVAHTAGCYCIAIDPMGRYFAVGS 210 (314)
Q Consensus 176 ~~~~~--~~---~~~~~~~~~~~i~~i~~~~~~~~l~t~~ 210 (314)
.+... .+ .......|.+-.+.-+|+.....+||++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 33221 11 1122234544455556655556788765
No 269
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.9e-10 Score=91.91 Aligned_cols=251 Identities=15% Similarity=0.129 Sum_probs=173.2
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC-CCcEEEEeC
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVRLWDA 96 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-D~~v~iwd~ 96 (314)
-|++.|+.|.-+ -.+++.+++.||.++.|.-.. ..+......+..|...|..++.+-+ +-++.|.+. |..+|++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~-isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR-ISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCC-ccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEe
Confidence 388888888643 467999999999999997542 1111122345678888888887765 457788777 999999998
Q ss_pred CCCceeeeEEecCceEEEEEcc-CC---CEEEEE-eCCCcEEEEEccCCe-E--eeeeccCcceeeEEeccCCCeEEEEc
Q 021319 97 RSGKCSQQAELSGENINITYKP-DG---THIAVG-NRDDELTILDVRKFK-P--IHRRKFGYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~~~-~~d~~i~i~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (314)
.+-.......+..-+-.+.|.. .| ..++++ ..++.+.++|.+..- + .....+..++..+.+.+.++.+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 7765443333332222333322 22 244444 456779999976432 2 23344567888999999999999999
Q ss_pred CCceEEEEeCCC-CCceee--------------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee--
Q 021319 169 GNGTVEVLTYPS-LRPLDT--------------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-- 231 (314)
Q Consensus 169 ~~g~~~~~~~~~-~~~~~~--------------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-- 231 (314)
..|.+..|..+. .+.... +.--...+.++.|+|++..+++-+.|..|++++.++++.++.+..
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999998763 211111 111234578999999999999999999999999988765443311
Q ss_pred ------------------------------cc-cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 232 ------------------------------LE-WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 232 ------------------------------~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
+. ..-..+.|...+.+|+.|+.=| |+|.++.+++..+.+.
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 11 1234578999999999998877 8999999988877663
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.16 E-value=6.4e-07 Score=73.16 Aligned_cols=213 Identities=16% Similarity=0.216 Sum_probs=140.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEc-cCCCEEEEEeCCCcEEEEEccCCeEe--eeec
Q 021319 71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFKPI--HRRK 147 (314)
Q Consensus 71 ~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~ 147 (314)
+.+|.+..+.++++--..+.|..||..++.... ..... ...+.+. +++ .++++.. +.+.++|+.+.+.. ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeecc
Confidence 567887556777777788999999998775432 33333 6667777 564 4555544 44566698776433 2221
Q ss_pred ----cCcceeeEEeccCCCeEEEEcCC--------ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCe
Q 021319 148 ----FGYEVNEIAWNMTGEMFFLTTGN--------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSL 214 (314)
Q Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~ 214 (314)
.....+.+++.++|+.+++.... |.+..++.. .+ .......-...+.|+|+|+++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccce
Confidence 23457889999999988776543 556666655 22 333333345678999999998765 5566788
Q ss_pred EEEeeCCC-cE---EEEEeeec---ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc-CccceeEEc-CC
Q 021319 215 VSLWDISE-ML---CVRTFTKL---EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWN-PK 285 (314)
Q Consensus 215 i~vwd~~~-~~---~~~~~~~~---~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~-~~i~~v~~~-~~ 285 (314)
|..+++.. .. ..+.+... ......+++.++|++.++.-..+.|.+++.. |+.+..+... ..+++++|. |+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99999852 21 12222221 2236789999999998888888999999987 8888887654 578999994 66
Q ss_pred CCeeE
Q 021319 286 YNLLA 290 (314)
Q Consensus 286 ~~~la 290 (314)
.+.|.
T Consensus 237 ~~~L~ 241 (246)
T PF08450_consen 237 GKTLY 241 (246)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 55443
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=9.5e-08 Score=83.24 Aligned_cols=253 Identities=15% Similarity=0.131 Sum_probs=148.7
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 111 (314)
+..++.++.|+.+..+|.+++.. .....+. ..+.+.-.. . ++.++.+..++.+..+|..+|+..-........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~---~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKE--LWRAKLS---SEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcE--eeeeccC---ceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 45666777788888887755331 1111111 112111001 1 245667788999999999999876555443322
Q ss_pred EEEE--Ecc--CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--------eeeEE--eccCCCeEEEEcCCceEEEEe
Q 021319 112 INIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------VNEIA--WNMTGEMFFLTTGNGTVEVLT 177 (314)
Q Consensus 112 ~~~~--~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~g~~~~~~ 177 (314)
.... .+| .+..++.+..++.+..+|+++.+.+........ ...+. ....+..++++..+|.+..++
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1110 000 134677888889999999988876654322110 00000 011345677777889999999
Q ss_pred CCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCCce
Q 021319 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d~~ 256 (314)
..+.+.+..... ....... .++..+++++.+|.+..+|..+++.+-........ ..... ..+..|+.++.||.
T Consensus 258 ~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~G~ 331 (377)
T TIGR03300 258 LRSGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFEGY 331 (377)
T ss_pred CCCCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCCCE
Confidence 877665443321 1111222 24567777889999999999988776544222111 11111 14678899999999
Q ss_pred EEEEECCCCCeEEEEeccC-ccc-eeEEcCCCCeeEEEecCCccc
Q 021319 257 IDISNVHTGRTVHQIPCRA-AMN-SVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 257 v~v~~~~~~~~~~~~~~~~-~i~-~v~~~~~~~~la~~~~d~~~~ 299 (314)
+.++|..+|+.+.+++... .+. +-... ++ .|..++.|+.+|
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY 374 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence 9999999999998876433 232 22332 33 466788786655
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=7.3e-09 Score=83.79 Aligned_cols=235 Identities=19% Similarity=0.321 Sum_probs=150.3
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc---eeee--E-------------EecCceEEEEEccCC--CEEEE
Q 021319 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK---CSQQ--A-------------ELSGENINITYKPDG--THIAV 125 (314)
Q Consensus 66 ~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~---~~~~--~-------------~~~~~~~~~~~~~~~--~~l~~ 125 (314)
.+-|.++.|... +++|++|..+|.|-++.-.... .... . +....+..+.|.+++ ..+.+
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345778888876 5799999999999999643221 1111 1 112233457777765 46778
Q ss_pred EeCCCcEEEEEccCCeEee-----------------------------------e--eccCcceeeEEeccCCCeEEEEc
Q 021319 126 GNRDDELTILDVRKFKPIH-----------------------------------R--RKFGYEVNEIAWNMTGEMFFLTT 168 (314)
Q Consensus 126 ~~~d~~i~i~d~~~~~~~~-----------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~ 168 (314)
.+.|.+|++|-++...... . -.+.+.++++..+.+++.++ +.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 8899999999875321000 0 01233456677776666655 44
Q ss_pred CCceEEEEeCCCCC-ceeeee--e-----cccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcE-EE---EEeeec---
Q 021319 169 GNGTVEVLTYPSLR-PLDTVV--A-----HTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEML-CV---RTFTKL--- 232 (314)
Q Consensus 169 ~~g~~~~~~~~~~~-~~~~~~--~-----~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~-~~---~~~~~~--- 232 (314)
.+=++.+|.+.-.. ....+. . -..-|++..|+|. ..+++-.++.|+|++-||+... |- +.+...
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56678888775322 111111 1 1234788889995 4678888899999999998432 21 122211
Q ss_pred ---------ccCeEEEEEccCCcEEEEecCCceEEEEEC-CCCCeEEEEecc-------------Cc---cceeEEcCCC
Q 021319 233 ---------EWPVRTISFSHTGDYIASASEDLFIDISNV-HTGRTVHQIPCR-------------AA---MNSVEWNPKY 286 (314)
Q Consensus 233 ---------~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~-~~~~~~~~~~~~-------------~~---i~~v~~~~~~ 286 (314)
-..|+.+.|+++|+|++|-+- ..|.+||+ +..+++..++-. .. -..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 135788999999999986432 56999999 567777666421 12 2378999998
Q ss_pred CeeEEEecCCcccccccceEEeccc
Q 021319 287 NLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 287 ~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
..++|||-. ..+++|++
T Consensus 342 ~~v~TGsy~--------n~frvf~~ 358 (433)
T KOG1354|consen 342 SYVMTGSYN--------NVFRVFNL 358 (433)
T ss_pred ceEeccccc--------ceEEEecC
Confidence 899988854 46788875
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=9.8e-10 Score=90.35 Aligned_cols=157 Identities=13% Similarity=0.214 Sum_probs=111.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCeE----eeeeccCcceeeEEeccCCCeEEEEcCC---ceEEEEeCCCCCceee
Q 021319 114 ITYKPDGTHIAVGNRDDELTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGN---GTVEVLTYPSLRPLDT 186 (314)
Q Consensus 114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~ 186 (314)
...++++++++++..+....+++.+...+ +...........+.+........++... ..+.++.... .+...
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcch
Confidence 44567888888888888877777654332 2222223333444444444444444443 4444444433 23344
Q ss_pred eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-eecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319 187 VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 265 (314)
Q Consensus 187 ~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~ 265 (314)
+.+|-.-++.++++||.+.+.++++|..|++-.......+..| .+|+.-|..++.-++ +.|+|||.|+.+++||..+|
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 5689999999999999999999999999999998777666655 468888999998664 44999999999999999999
Q ss_pred CeEEEEe
Q 021319 266 RTVHQIP 272 (314)
Q Consensus 266 ~~~~~~~ 272 (314)
+.++.++
T Consensus 226 k~L~t~d 232 (390)
T KOG3914|consen 226 KLLDTCD 232 (390)
T ss_pred Ccccccc
Confidence 9987764
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.13 E-value=1.2e-07 Score=80.67 Aligned_cols=278 Identities=17% Similarity=0.218 Sum_probs=169.5
Q ss_pred cccEEEEEECCCCCEEEEeeCCCc---------------EEEeecCCCCCCceeeEEeecCCCC--EE-EEEEcCCCCCE
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQT---------------ARVWHIEPHGHGKVKDIELRGHADS--VD-QLCWDPKHADL 81 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~---------------v~iw~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~ 81 (314)
...|..+.|||.+++|.|=+.... +.+||..++. ....+.+-+.+ .. -+.|+-++ .+
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D-~y 145 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDD-KY 145 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce----eEeeccccCCcccccceeeeeecc-hh
Confidence 346899999999999999665554 8899887532 22223333332 22 34555443 23
Q ss_pred EEEEeCCCcEEEEeCCCCceee--eEEec-CceEEEEEccCCC--EEE-----EEeCCCcEEEEEccCCeEeeeec-cCc
Q 021319 82 IATASGDKTVRLWDARSGKCSQ--QAELS-GENINITYKPDGT--HIA-----VGNRDDELTILDVRKFKPIHRRK-FGY 150 (314)
Q Consensus 82 l~s~~~D~~v~iwd~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~l~-----~~~~d~~i~i~d~~~~~~~~~~~-~~~ 150 (314)
+|-- -...+.|+++ ++.... ...+. .......++|.++ .|+ .......+.+|.+.....+.... ...
T Consensus 146 ~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~ 223 (561)
T COG5354 146 VARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV 223 (561)
T ss_pred hhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee
Confidence 3322 2257888886 333221 11122 2334566777543 222 13345667888876555544322 223
Q ss_pred ceeeEEeccCCCeEEEEc-----------CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee--CCCeEEE
Q 021319 151 EVNEIAWNMTGEMFFLTT-----------GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS--ADSLVSL 217 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~--~dg~i~v 217 (314)
.-..+.|++.|+++++-. +..+++++++.... +.....-.++|...+|.|.++.+++.+ .+..+.+
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceee
Confidence 455678899988776532 23556666665322 222223467889999999998876554 6778999
Q ss_pred eeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC---ceEEEEECCCCCeEE-EEeccCccceeEEcCCCCeeEEEe
Q 021319 218 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 218 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~~v~v~~~~~~~~~~-~~~~~~~i~~v~~~~~~~~la~~~ 293 (314)
+|++... . +-..+.+=..+-|||.+++++.++-| |.+.+||.....+.- .+ ......-+.|+|++.++-++-
T Consensus 303 ~~lr~Nl-~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 303 FDLRGNL-R--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cccccce-E--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecC
Confidence 9998762 2 22344455668899999999998866 789999987644333 33 233456679999998876544
Q ss_pred cCCcccccccceEEeccc
Q 021319 294 DDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 294 ~d~~~~~~~~~~~~~~~~ 311 (314)
+..+ ...+.-++||++
T Consensus 379 -ts~k-~~~Dn~i~l~~v 394 (561)
T COG5354 379 -TSEK-LRVDNSIKLWDV 394 (561)
T ss_pred -CCcc-cccCcceEEEEe
Confidence 2222 345677899986
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.4e-07 Score=81.25 Aligned_cols=207 Identities=13% Similarity=0.064 Sum_probs=122.4
Q ss_pred CEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe-CC--CcEEEEEccCCe
Q 021319 68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RD--DELTILDVRKFK 141 (314)
Q Consensus 68 ~v~~l~~~~~~~~~l~s~~~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~ 141 (314)
......|+|++..+++..+. +..|.++|+.+++........+......|+|||+.++... .+ ..|.++|+...+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 67788999997654543333 3568888998887655544445455678999998877543 33 457777876654
Q ss_pred EeeeeccCcceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC------
Q 021319 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------ 212 (314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------ 212 (314)
...-...........|+|+|+.+++.+. .+ .+.++++...+...... ... ....|+|+|+.++.....
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccC
Confidence 3322222222334579999987776653 33 56666665544322211 111 224899999988766543
Q ss_pred ---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-c--eEEEEECCCCCeEEEEec-cCcccee
Q 021319 213 ---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPC-RAAMNSV 280 (314)
Q Consensus 213 ---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~--~v~v~~~~~~~~~~~~~~-~~~i~~v 280 (314)
..|.+.|+..+.. +.+.... .....+|+|||+.|+..+.+ + .+.+.++. |+....++. .+.+..-
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCC
Confidence 2578888876643 3333322 22357899999988766543 2 34455553 343334433 2334433
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.5e-07 Score=80.99 Aligned_cols=282 Identities=16% Similarity=0.287 Sum_probs=167.3
Q ss_pred cEEEEEECCCCCEEEEeeCC-----------CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 22 KVHSVAWNCTGTKLASGSVD-----------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D-----------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
.|.-+.|||..++|+|=|.. ..++|||+.++..-+. ...+.+....-.-..|+.++ .++|.-.. .+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDD-KYFARMTG-NS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcc-eeccCCCccccceEEeccCC-ceeEEecc-ce
Confidence 48899999999999996531 5789999987532111 11111111112235788764 56654444 68
Q ss_pred EEEEeCCCCceeeeEEecC-ceEEEEEccCCCEEEEEeC--C---CcEEEEEccCCeEeeeecc-CcceeeEEeccCCCe
Q 021319 91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNR--D---DELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEM 163 (314)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~--d---~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (314)
|.|++..+-.......++- .+....|+|.++.||-=.- + -.+.+..+.+.+.+.+... ...-..+-|-..|++
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 8999876532221111221 2334678888877763221 1 1356666666555544322 222334557777777
Q ss_pred EEEEcC----------CceEEEEeCCCC-CceeeeeecccceEEEEECCCCCEEEEeeCC---CeEEEeeCCC-cE---E
Q 021319 164 FFLTTG----------NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISE-ML---C 225 (314)
Q Consensus 164 ~~~~~~----------~g~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vwd~~~-~~---~ 225 (314)
+.+-.. -.++.++.++.. -|+..+. ....+...+|-|.|..+++-+.+ .++.+|.+.+ .. .
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 765321 123445554332 2333332 34568889999999887755443 4789998873 22 2
Q ss_pred EEEeeecccCeEEEEEccCCcEEEEe---cCCceEEEEECCCCCeEEE-EeccCccceeEEcCCCCeeEEEecCCccccc
Q 021319 226 VRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 301 (314)
Q Consensus 226 ~~~~~~~~~~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~ 301 (314)
++.+.. ...+.+-|+|.|++++.+ |..|.+..+|+........ .+-...-+.+.|-|.|+++.+++.- |.+
T Consensus 487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~---wrh 561 (698)
T KOG2314|consen 487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS---WRH 561 (698)
T ss_pred hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh---hhh
Confidence 333322 346789999999998876 4568899999874332222 1223457889999999999988853 232
Q ss_pred -ccceEEecccc
Q 021319 302 -DEGVFRIYGFE 312 (314)
Q Consensus 302 -~~~~~~~~~~~ 312 (314)
.+.=+|||.|+
T Consensus 562 k~d~GYri~tfq 573 (698)
T KOG2314|consen 562 KVDNGYRIFTFQ 573 (698)
T ss_pred ccccceEEEEee
Confidence 23448899885
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=1.4e-07 Score=79.67 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=154.6
Q ss_pred cceeeeeccceeeecccc--cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEee-----cCCCC--EE---E
Q 021319 4 SSIPFKNLHSREYTGHKK--KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----GHADS--VD---Q 71 (314)
Q Consensus 4 ~~~~~~~~~~~~~~gH~~--~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~-----~h~~~--v~---~ 71 (314)
.++..-++..+++..|++ .=++=..+.||+.|+=.- -|.|.+||.++.. +..+++. ....+ +. -
T Consensus 248 GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~-~GdIylydP~td~---lekldI~lpl~rk~k~~k~~~psky 323 (668)
T COG4946 248 GNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN-AGDIYLYDPETDS---LEKLDIGLPLDRKKKQPKFVNPSKY 323 (668)
T ss_pred cceEEeccCCchhhhcCCchhccccccCCCCcEEEEec-CCcEEEeCCCcCc---ceeeecCCccccccccccccCHHHh
Confidence 345556666777777765 233333467888765432 3679999876543 2222221 01111 11 1
Q ss_pred E-EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-cEEEEEccCCeEeeeeccC
Q 021319 72 L-CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFG 149 (314)
Q Consensus 72 l-~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~ 149 (314)
+ .|++..+++++..|. |.+-|.+...+-.++. ...+.+.=..+..+++.++.|..|| .+-++|.+..+.....+.-
T Consensus 324 ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 324 LEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL 401 (668)
T ss_pred hhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc
Confidence 1 144455678877776 4555555544433322 1222222244556777889999999 7999999887654444444
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCC----eEEEeeCCCcEE
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLC 225 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg----~i~vwd~~~~~~ 225 (314)
..+..+..+++|+.++++.....+.+++.........-....+-|+.++|+|+++++|-+--+| .|+++|+..++.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 6788999999999999999999999999987765433334455689999999999999887776 599999998876
Q ss_pred EEEee--ecccCeEEEEEccCCcEEEEe
Q 021319 226 VRTFT--KLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 226 ~~~~~--~~~~~v~~~~~sp~~~~l~s~ 251 (314)
...-. .++. +=+|.|++++|.--
T Consensus 482 y~vTT~ta~Df---sPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDVTTPTAYDF---SPAFDPDGRYLYFL 506 (668)
T ss_pred EEecCCccccc---CcccCCCCcEEEEE
Confidence 54322 2322 34688899876643
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=1e-06 Score=84.12 Aligned_cols=273 Identities=15% Similarity=0.205 Sum_probs=166.3
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR- 97 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~- 97 (314)
.+.|.+++|-++...++.+..+|-|-+...+...... ..+. ..-...|.+++|+|++ ++|+....++++.+-+..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccc
Confidence 4679999999999999999999999988332211111 1222 2235679999999985 688888888888765321
Q ss_pred ------------CC----------ceeeeE-----------------E--------ecCceEEEEEccCCCEEEEEeC--
Q 021319 98 ------------SG----------KCSQQA-----------------E--------LSGENINITYKPDGTHIAVGNR-- 128 (314)
Q Consensus 98 ------------~~----------~~~~~~-----------------~--------~~~~~~~~~~~~~~~~l~~~~~-- 128 (314)
-| +...++ + .......++|..||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 00 000000 0 1123456889999999998875
Q ss_pred -C---CcEEEEEccCCeEeeeec-cCcceeeEEeccCCCeEEEEcC---CceEEEEeCCCCCce-eeee--ecccceEEE
Q 021319 129 -D---DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPL-DTVV--AHTAGCYCI 197 (314)
Q Consensus 129 -d---~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~-~~~~--~~~~~i~~i 197 (314)
. ..++||+-. +......+ ...--..++|.|.|+.+++... ...|.+|.-...+.- ..+. .....+..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 458888843 44333322 2233457899999998887653 234444443332211 1111 234578999
Q ss_pred EECCCCCEEEEeeCCCeEEEeeCCCcEE-EE-Eeeec-ccCeEEEEEccCCc-EEEEecCCceEE----EEECCCC----
Q 021319 198 AIDPMGRYFAVGSADSLVSLWDISEMLC-VR-TFTKL-EWPVRTISFSHTGD-YIASASEDLFID----ISNVHTG---- 265 (314)
Q Consensus 198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~-~~~~~-~~~v~~~~~sp~~~-~l~s~s~d~~v~----v~~~~~~---- 265 (314)
.|++++..||..-.|. |.+|-+.+.+- ++ .+.-. ...+..+.|+|... .|...+.++.+. .|++..+
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999987665 99999988763 22 22211 22345589998653 355454434332 2222211
Q ss_pred ------------CeEE----------------EEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 266 ------------RTVH----------------QIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 266 ------------~~~~----------------~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
..+. .+....+|+.|+|++++..+|.-..|+.
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~ 449 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGS 449 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCC
Confidence 1111 1122457999999999877777777753
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=3e-07 Score=80.07 Aligned_cols=257 Identities=14% Similarity=0.054 Sum_probs=153.1
Q ss_pred CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc
Q 021319 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (314)
Q Consensus 31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~ 110 (314)
.+..++.++.++.|.-+|..++. ......+.+. ....... . +..++.++.|+.+..+|..+|+..-.......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 136 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE 136 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence 36678888889999999876543 2222233221 1111222 2 34677888899999999999987665554443
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEE----eccCCCeEEEEcCCceEEEEeCCCCCceee
Q 021319 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA----WNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186 (314)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 186 (314)
....... .+..++++..++.+..+|.++.+.+...+...+..... ....+..++++..++.+..++..+.+.+..
T Consensus 137 ~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 137 VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 3221111 34567778889999999999888776654432211100 001234667777888998888876654432
Q ss_pred eeec-cc---c---eEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceE
Q 021319 187 VVAH-TA---G---CYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 257 (314)
Q Consensus 187 ~~~~-~~---~---i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v 257 (314)
.... .. . ...+.-+| .+..+++++.+|.+..||..+++.+-...... . ......+..++.++.|+.+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~--~~p~~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y--QGPAVDDNRLYVTDADGVV 291 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c--cCceEeCCEEEEECCCCeE
Confidence 2110 00 0 00010011 24577778889999999999987665443111 1 1122356788888999999
Q ss_pred EEEECCCCCeEEEEe-ccCc-cceeEEcCCCCeeEEEecCCccccc
Q 021319 258 DISNVHTGRTVHQIP-CRAA-MNSVEWNPKYNLLAYAGDDKNKYQA 301 (314)
Q Consensus 258 ~v~~~~~~~~~~~~~-~~~~-i~~v~~~~~~~~la~~~~d~~~~~~ 301 (314)
..+|..+|+.+.+.. .... ..+... .+..|..++.++.+|-+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 999999999887652 2221 122122 35577777777766653
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.7e-08 Score=87.09 Aligned_cols=237 Identities=18% Similarity=0.202 Sum_probs=154.5
Q ss_pred eeeccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 8 ~~~~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.+..-.+++.||+..|..+.|+.+.+.|-|...+|.|.||.+-.+ ++...+.-...+..|.+++|+.++ ..+.-.-.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYe 135 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SWCEEMINNRNKSVVVSMSWNLDG-TKICIVYE 135 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEc
Confidence 334456789999999999999999999999999999999987532 222222112234568899999875 45666777
Q ss_pred CCcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCCcEEEEEccCCe-------E-eee--ec--cCcceee
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFK-------P-IHR--RK--FGYEVNE 154 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~-~~~--~~--~~~~~~~ 154 (314)
||.|.+=.+...+ +.-.++++... .+.|++|.+.+..+-..|.+.++|....- . +.. .. .+..+..
T Consensus 136 DGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred cCCEEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 7777665554332 22222333332 47799999988888889999999874321 0 100 00 1112333
Q ss_pred EEe--------ccCCCeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCC---------eEE
Q 021319 155 IAW--------NMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---------LVS 216 (314)
Q Consensus 155 ~~~--------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---------~i~ 216 (314)
+.| .|+-+.++++..+|.+.+..... ..|+-. ..+-.+..+.|+++|..||+++.+. .|+
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 333 34667889999999887765432 333321 2224577889999999999997653 455
Q ss_pred EeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319 217 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
+|.. -++.+.+++.....|+.++|-..|-.+|-+
T Consensus 293 Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 293 FYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred Eecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 5542 356677777777788888886666555433
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.04 E-value=2.5e-07 Score=78.79 Aligned_cols=274 Identities=18% Similarity=0.212 Sum_probs=172.2
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC---------
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--------- 89 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~--------- 89 (314)
-.-++..++|||-|.+|++.... .|.+|+-.... .. ..+ -|. .|..+.|+|.+ .+|.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~--~l--~~~-~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA--KL--VRF-RHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchh--he--eee-ecC-CceecccCccc-ceeeeeccCCccChhhccC
Confidence 34578999999999999988764 48899765421 11 122 244 47888999975 5777766543
Q ss_pred ------cEEEEeCCCCceeeeEEecCce---E-EEEEccCCCEEEEEeCCCcEEEEEcc-CCeE--eeeeccCcceeeEE
Q 021319 90 ------TVRLWDARSGKCSQQAELSGEN---I-NITYKPDGTHIAVGNRDDELTILDVR-KFKP--IHRRKFGYEVNEIA 156 (314)
Q Consensus 90 ------~v~iwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~--~~~~~~~~~~~~~~ 156 (314)
.+.+||+.+|..+..++.-... . .+.|+-+.++++-- ....+.++++. +..+ ....+ ...+....
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr-~~gi~dFs 180 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLR-PVGILDFS 180 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcc-ccceeeEE
Confidence 4899999999888766543322 2 35677777776643 34578888852 2111 11111 23455666
Q ss_pred eccCCCe--EEE-----EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee-----------CCCeEEEe
Q 021319 157 WNMTGEM--FFL-----TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-----------ADSLVSLW 218 (314)
Q Consensus 157 ~~~~~~~--~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~-----------~dg~i~vw 218 (314)
|+|.++. ++. ....+++++|..+..+.+.+.......-..+.|++.|+++..-- .+..+.++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 7776432 221 23467888888875554443322233335677888887654321 12246667
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCcEEEEec--CCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
++...-+. .......+|...+|.|.++.+++.+ .+..+.++|+... +...+ ....-+.+.|||..+++..+|=|+
T Consensus 261 ~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 261 RITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred eecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec-CCcccccccccCcccEEEEecCCc
Confidence 76533222 2224567999999999998877555 6788899988764 33333 356678889999999999888665
Q ss_pred cccccccceEEecc
Q 021319 297 NKYQADEGVFRIYG 310 (314)
Q Consensus 297 ~~~~~~~~~~~~~~ 310 (314)
- -|.+-||+
T Consensus 338 l-----~gni~i~~ 346 (561)
T COG5354 338 L-----QGNIEIFD 346 (561)
T ss_pred c-----ccceEEec
Confidence 2 25555554
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.6e-10 Score=94.76 Aligned_cols=205 Identities=16% Similarity=0.215 Sum_probs=141.4
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC-------ceeeeEEec-CceEEEEEccCCCEEEEEeCCCcE
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAELS-GENINITYKPDGTHIAVGNRDDEL 132 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i 132 (314)
.+.||...|.++.-..+ .+-++|++.|++|++|.++.. .|..+...+ ..+-.+.|..+-+++++ -|+.|
T Consensus 730 nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 46789998888765443 467889999999999987642 244443333 33445777777666654 47899
Q ss_pred EEEEccCCeEeeeecc------CcceeeEEeccCCCeEEEE-cCCceEEEEeCCCCCceeeeee-----cccceEEEEEC
Q 021319 133 TILDVRKFKPIHRRKF------GYEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTVVA-----HTAGCYCIAID 200 (314)
Q Consensus 133 ~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~ 200 (314)
.+||+-..+++..... +..+.++. +.+...++++ +...++++++.+..+-...+.. -+.-+.++++-
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999876655443221 11122221 2223344444 6778999999877655444432 22346899999
Q ss_pred CCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE-EECCCCCeEEE
Q 021319 201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI-SNVHTGRTVHQ 270 (314)
Q Consensus 201 ~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v-~~~~~~~~~~~ 270 (314)
+.|+.+|.+-++|+|.+.|.++++.+......+.....++ .|..+.|+....|..+.| |....|....+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 9999999999999999999999998887766555555554 488899999999999998 98777655444
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=7.3e-07 Score=85.16 Aligned_cols=234 Identities=16% Similarity=0.254 Sum_probs=145.5
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCcEEEE----eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC
Q 021319 65 HADSVDQLCWDPKHADLIATASGDKTVRLW----DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (314)
Q Consensus 65 h~~~v~~l~~~~~~~~~l~s~~~D~~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 140 (314)
..+.|.++.+-++. +-++.+..+|.|.+. |.....+.........+.+++|+||+..|+..+.++.+.+.+ +.+
T Consensus 74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 34678888888775 455677788999988 666665555556778889999999999999999999988875 566
Q ss_pred eEeeeeccC------cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEeeC
Q 021319 141 KPIHRRKFG------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (314)
Q Consensus 141 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~~~ 211 (314)
.++...... ...-.|.|-....+|=...+...-+-.. .+..+ ...+. +...-..|+|-.||.++|+.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~-~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR-DPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc-CCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 665443221 1223344433332221111110000000 00000 01111 3335578999999999998875
Q ss_pred ---C---CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecC---CceEEEEECCCCCeEEEEec-----cCcc
Q 021319 212 ---D---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIPC-----RAAM 277 (314)
Q Consensus 212 ---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---d~~v~v~~~~~~~~~~~~~~-----~~~i 277 (314)
. ..+|||+-. +....+-+..+.--.+++|.|.|.++|+.-. ...|..|+- .|-.-..+.. ...|
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence 2 479999964 5433333333333456899999999998864 344555553 3332233332 3479
Q ss_pred ceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 278 NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 278 ~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
..++||+++..||..-.|+ +++|-..|
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~---------vqLWt~~N 334 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR---------VQLWTRSN 334 (928)
T ss_pred eEEEECCCCCEEEEEecCC---------ceEEEeeC
Confidence 9999999999999877554 77776543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.02 E-value=2e-07 Score=73.25 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=128.4
Q ss_pred CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEE---EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEec-
Q 021319 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD---QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS- 108 (314)
Q Consensus 33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~---~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~- 108 (314)
.+|+.||.-|...+|...+... ... ....|...|. ..|-. .--+.-++.|.++++.++.-+.........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~-h~~--~cd~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~~~~~h~~~ 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG-HLY--QCDVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN 158 (344)
T ss_pred cEEEeccccceeeeecccCccc-cee--eecccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcccceeeccc
Confidence 4799999999999998875321 111 1222333222 11211 123446789999999987654333322222
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-E-eeeecc--CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-c
Q 021319 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFK-P-IHRRKF--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-P 183 (314)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 183 (314)
-....+++++|++++++.+....+-.|.+.... . +..... .-.-.+..|+.....++++..+|.+.+||.+... +
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 235578899999999999999999988875432 1 221221 2234567899999999999999999999986543 2
Q ss_pred ee----eeeecccceEEEEECCCCC--EEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319 184 LD----TVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTFT 230 (314)
Q Consensus 184 ~~----~~~~~~~~i~~i~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~ 230 (314)
+. +-..|.+++..+.|++.|. +|...-.-+.+++-|++++...+.+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 22 2335889999999998764 46666667789999999887665543
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=2.1e-09 Score=103.18 Aligned_cols=210 Identities=11% Similarity=0.154 Sum_probs=154.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc--CcceeeEEec
Q 021319 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWN 158 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~ 158 (314)
.+.....++...-|..+.+....... -....++.-+|...+.++|+.||.+++|.....+++..... ...+....|+
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~~~k~~-v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVMIKHP-VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred cCCcccCCccccceecccceeEeecc-cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc
Confidence 44444455555556554333222221 12345577778888999999999999999888777655433 2456677889
Q ss_pred cCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeC---CCeEEEeeCCCc---EEEEEeeec
Q 021319 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEM---LCVRTFTKL 232 (314)
Q Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~---dg~i~vwd~~~~---~~~~~~~~~ 232 (314)
..|+.+.++..||.+.+|... .++......|........|-. ..+++++. ++.+.+||.... .++. +.|
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH 2335 (2439)
T ss_pred ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec
Confidence 999999999999999999876 556667778888888887764 56666643 568999997532 2333 678
Q ss_pred ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
+..++++++-|.-+.|+|||.+|.|.+||+...++++.++. +. ...+|.+++.. |.+|||.+.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~--------g~ikIw~~s 2398 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSE--------GNIKIWRLS 2398 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcc--------cceEEEEcc
Confidence 88999999999999999999999999999987666665543 54 56788888865 789999875
Q ss_pred C
Q 021319 313 N 313 (314)
Q Consensus 313 ~ 313 (314)
+
T Consensus 2399 ~ 2399 (2439)
T KOG1064|consen 2399 E 2399 (2439)
T ss_pred c
Confidence 3
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=8.1e-10 Score=62.26 Aligned_cols=37 Identities=46% Similarity=0.832 Sum_probs=34.7
Q ss_pred cceeeecccccEEEEEECCCCCEEEEeeCCCcEEEee
Q 021319 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (314)
Q Consensus 12 ~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~ 48 (314)
..+.+.+|.+.|++|+|+|++++|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567899999999999999999999999999999997
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=6.9e-09 Score=91.77 Aligned_cols=240 Identities=18% Similarity=0.311 Sum_probs=143.6
Q ss_pred cEEEEEECCCCC---EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 22 ~V~~v~~s~~g~---~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
.|-.++|+|... .+++.+..++| +|++.... .......+.||..+|+.+-|+|+...++++++-|..+..||.++
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhh-hhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 577888988753 46666665554 89987543 34456678999999999999999999999999999999999986
Q ss_pred Cceeee-E-EecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEE
Q 021319 99 GKCSQQ-A-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 99 ~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (314)
-....- . ........+.|+ .....+++......+.+|
T Consensus 147 p~~p~ys~~~w~s~asqVkwn-----------------------------------------yk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWN-----------------------------------------YKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred CCcceeeeecccccCceeeec-----------------------------------------ccCcchhhhccCCceEEE
Confidence 542110 0 011122223333 333333333344444555
Q ss_pred eCC-CCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEe--
Q 021319 177 TYP-SLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASA-- 251 (314)
Q Consensus 177 ~~~-~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~-- 251 (314)
+.. ...++..+.+|...++.++|+.- ...+.+++.||+|+.||..+... -+.....+.++..-+|-|-|+-.+.-
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence 443 33455556667777788877643 34577889999999999865321 22222345677777777765433221
Q ss_pred cCCceEEE---------EECCC-CCeEEEEe-ccCccceeEEcCC----------CCeeEEEecCCcccccccceEEecc
Q 021319 252 SEDLFIDI---------SNVHT-GRTVHQIP-CRAAMNSVEWNPK----------YNLLAYAGDDKNKYQADEGVFRIYG 310 (314)
Q Consensus 252 s~d~~v~v---------~~~~~-~~~~~~~~-~~~~i~~v~~~~~----------~~~la~~~~d~~~~~~~~~~~~~~~ 310 (314)
-.+..+.. |++-+ .++++.+. |...|...-|-.. .-.|+|-+.|- ++|+|=
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~--------~lrlWp 337 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ--------TLRLWP 337 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC--------ceEeee
Confidence 11113333 33322 34555554 3334444444332 23577788774 788886
Q ss_pred cc
Q 021319 311 FE 312 (314)
Q Consensus 311 ~~ 312 (314)
+.
T Consensus 338 I~ 339 (1081)
T KOG0309|consen 338 ID 339 (1081)
T ss_pred cc
Confidence 64
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=6e-08 Score=77.66 Aligned_cols=241 Identities=15% Similarity=0.181 Sum_probs=146.2
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCC-CCceeeEEeecCCC------------CEEEEEEc-CCCCCEEEE
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHAD------------SVDQLCWD-PKHADLIAT 84 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~-~~~~~~~~~~~h~~------------~v~~l~~~-~~~~~~l~s 84 (314)
....|++|.|...|.+++||..-|.|.+|.-+... +...-..++++|.. .|..+.|. +.+.+.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999643211 11101113444432 35667664 334456777
Q ss_pred EeCCCcEEEEeCCCCce--ee-------------------------eEEecC-----------------ceEEEEEccCC
Q 021319 85 ASGDKTVRLWDARSGKC--SQ-------------------------QAELSG-----------------ENINITYKPDG 120 (314)
Q Consensus 85 ~~~D~~v~iwd~~~~~~--~~-------------------------~~~~~~-----------------~~~~~~~~~~~ 120 (314)
...|++|++|-+..... +. +...+. .+.++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998754310 00 000000 11234555555
Q ss_pred CEEEEEeCCCcEEEEEccCCeEeee---ecc------CcceeeEEeccCC-CeEEEEcCCceEEEEeCCCCC------ce
Q 021319 121 THIAVGNRDDELTILDVRKFKPIHR---RKF------GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLR------PL 184 (314)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~---~~~------~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~------~~ 184 (314)
..++ ...|-.|.+|++.....-.. ++. ..-+.+..|+|.- +.+.-++..|.+++.++++.. .+
T Consensus 185 et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 4444 44677899998875433221 221 1224566777764 455667788999999886321 11
Q ss_pred ee----------eeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-cEEEEEeeecc------------cC---eEE
Q 021319 185 DT----------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLE------------WP---VRT 238 (314)
Q Consensus 185 ~~----------~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~------------~~---v~~ 238 (314)
.. +......|..+.|+++|+++++-+- -+|++||++- ..++++..-|. .+ -..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1122345788899999999986643 5799999863 34556553221 12 234
Q ss_pred EEEccCCcEEEEecCCceEEEEE
Q 021319 239 ISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
+.||-|.+.+.+||.....-++-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 78898888888888765555544
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=1.7e-06 Score=70.14 Aligned_cols=220 Identities=19% Similarity=0.135 Sum_probs=135.5
Q ss_pred CCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC
Q 021319 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120 (314)
Q Consensus 41 D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (314)
+|+|..||..++. .+....+..-.....+.... . +..++.++.++.+..||..+|+............... ...+
T Consensus 2 ~g~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGK--ELWSYDLGPGIGGPVATAVP-D-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTE--EEEEEECSSSCSSEEETEEE-E-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred CCEEEEEECCCCC--EEEEEECCCCCCCccceEEE-e-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence 5778888875432 23333331111222211221 2 3467777899999999999998877666533322111 2345
Q ss_pred CEEEEEeCCCcEEEEEccCCeEeeee-ccCcc----eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccc--
Q 021319 121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYE----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-- 193 (314)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 193 (314)
..++++..++.+..+|.++.+.+... ....+ .........++.++++..++.+..++..+.+.+.........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 66777778889999999999888773 32211 112223334788888888999999998888776655443211
Q ss_pred --------eEEEEECCCCCEEEEeeCCCe-EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 194 --------CYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 194 --------i~~i~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
+..-.+..++ .+..++.++. +.+ |..+++.+-... ...+.. ...+.+..|+.++.++.+..+|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 1222233345 6666666764 666 999998653222 222222 1457788888888999999999999
Q ss_pred CCeEEE
Q 021319 265 GRTVHQ 270 (314)
Q Consensus 265 ~~~~~~ 270 (314)
|+.+.+
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 998764
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=5.5e-06 Score=67.84 Aligned_cols=222 Identities=20% Similarity=0.261 Sum_probs=144.6
Q ss_pred EEEEEcCCCCCEEEEEeCCCcE-EEEeCCCCceeeeEEec-CceE--EEEEccCCCEEEEEeC-----CCcEEEEEcc-C
Q 021319 70 DQLCWDPKHADLIATASGDKTV-RLWDARSGKCSQQAELS-GENI--NITYKPDGTHIAVGNR-----DDELTILDVR-K 139 (314)
Q Consensus 70 ~~l~~~~~~~~~l~s~~~D~~v-~iwd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~-----d~~i~i~d~~-~ 139 (314)
..++.+|.....++.+-.-|+. .+||.++++......-. +..+ .-.|++||++|++... .|.|-|||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3466788767777778777665 68999999876655332 2222 3679999999998754 4569999998 5
Q ss_pred CeEeeeec-cCcceeeEEeccCCCeEEEEcCC-------c-----------eEEEEeCCCCCceee--e--eecccceEE
Q 021319 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN-------G-----------TVEVLTYPSLRPLDT--V--VAHTAGCYC 196 (314)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------g-----------~~~~~~~~~~~~~~~--~--~~~~~~i~~ 196 (314)
.+.+..+. .+-....+.+.|+++.++++.+. | ++.+.+..+.+.+.+ + .-|..++..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 55554433 23445677889999888877541 2 233333344444433 2 236667899
Q ss_pred EEECCCCCEEEEeeCCC-------eEEEeeCCCcEEEEEee-------ecccCeEEEEEccCCcEEEEec-CCceEEEEE
Q 021319 197 IAIDPMGRYFAVGSADS-------LVSLWDISEMLCVRTFT-------KLEWPVRTISFSHTGDYIASAS-EDLFIDISN 261 (314)
Q Consensus 197 i~~~~~~~~l~t~~~dg-------~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~ 261 (314)
++++++|..++..--.| .+-+++.... +..+. ....-+-+|++++++.+++..| .-+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999998766543333 2444443322 22221 2334588999999998887666 567899999
Q ss_pred CCCCCeEEEEeccCccceeEEcCCCCeeEEEecC
Q 021319 262 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d 295 (314)
..+++.+..... .-+..|+-.+++ ++++.|.-
T Consensus 246 ~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 246 AATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 999998876543 246667777666 66666643
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=6.7e-07 Score=70.34 Aligned_cols=213 Identities=11% Similarity=0.078 Sum_probs=137.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeee-EEecCceEEEE--EccCCCEEEEEeCCCcEEEEEccCC--eE-eeeeccCcce
Q 021319 79 ADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINIT--YKPDGTHIAVGNRDDELTILDVRKF--KP-IHRRKFGYEV 152 (314)
Q Consensus 79 ~~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~--~~-~~~~~~~~~~ 152 (314)
...|+.|+.-|...+|...+.+.... .......+.+. +.-...-+..++.|.+++++++.-. +. ++... ...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cce
Confidence 45788999999999999886553322 22222211110 1111223556677778777776432 21 12111 237
Q ss_pred eeEEeccCCCeEEEEcCCceEEEEeCCCC-Cc-ee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE---
Q 021319 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RP-LD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--- 226 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--- 226 (314)
.++.+++++...++.+....+..|.++.. +. +. .....+..-.+.+|+.....+|++..||++.|||++.....
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 78899999999999999999988877542 22 22 12233445678899999999999999999999999865432
Q ss_pred --EEeeecccCeEEEEEccCC--cEEEEecCCceEEEEECCCCCeEEEEec---------cCccceeEEcCCCCeeEEEe
Q 021319 227 --RTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQIPC---------RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 227 --~~~~~~~~~v~~~~~sp~~--~~l~s~s~d~~v~v~~~~~~~~~~~~~~---------~~~i~~v~~~~~~~~la~~~ 293 (314)
.+-..|..+++.+.|+|.| .+|+-.=.-+.++|-|+++++..+.+.. ...|..-.|+.++.-.-+.+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 1223477889999999976 3566555668899999999876654321 12355556665554443333
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=1.5e-05 Score=65.03 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=133.7
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceee
Q 021319 25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (314)
Q Consensus 25 ~v~~s~-~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~ 103 (314)
++.|.+ ++.++.+--..+.|..|+.+.. ......+. . ...+++...++ .++.+..+ .+.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~---~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLP---G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESS---S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecC---C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEE
Confidence 577888 6667777667888988887642 22222222 2 66677763334 44445554 45556998887655
Q ss_pred eEEec------CceEEEEEccCCCEEEEEeCC--------CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE-EEc
Q 021319 104 QAELS------GENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTT 168 (314)
Q Consensus 104 ~~~~~------~~~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (314)
..... .....+++.|+|++.++.... +.+..++.. .+.......-...+.++|+++++.++ +-+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence 54431 122358899999977765543 446666666 33222222234468899999998665 556
Q ss_pred CCceEEEEeCCCCCc-e---eeee---ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319 169 GNGTVEVLTYPSLRP-L---DTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 241 (314)
Q Consensus 169 ~~g~~~~~~~~~~~~-~---~~~~---~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 241 (314)
..+.+..+++..... + ..+. ...+.+-.++++.+|++.++.-..+.|.++|.. ++.+..+......+.+++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 788888888753221 1 1121 111237789999999988888888999999987 7777776655457899999
Q ss_pred c-cCCcEEE
Q 021319 242 S-HTGDYIA 249 (314)
Q Consensus 242 s-p~~~~l~ 249 (314)
. |+.+.|+
T Consensus 233 gg~~~~~L~ 241 (246)
T PF08450_consen 233 GGPDGKTLY 241 (246)
T ss_dssp ESTTSSEEE
T ss_pred ECCCCCEEE
Confidence 4 6655444
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=2.1e-06 Score=72.84 Aligned_cols=172 Identities=14% Similarity=0.070 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCc-eEEEEeCCCCCceeeeeecccceEEE
Q 021319 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVAHTAGCYCI 197 (314)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~i 197 (314)
+|.+++..++ |...+++....-.++ ......+.-..+..+++-++.+..+| .+-+++....+. ..+...-+.|.++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE
Confidence 6778877765 444555543332222 22223466666666777888888888 889999877652 3344556789999
Q ss_pred EECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCc----eEEEEECCCCCeEEEEec
Q 021319 198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL----FIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~----~v~v~~~~~~~~~~~~~~ 273 (314)
..+|+|+.++.+.....+-+.|++++.....-+-...-|....|||+++++|.+=.+| .|+++|+..++....-..
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 9999999999999889999999998864332222334588999999999999998775 579999988887655433
Q ss_pred cCccceeEEcCCCCeeEEEe
Q 021319 274 RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 274 ~~~i~~v~~~~~~~~la~~~ 293 (314)
.+-=.+=||-|++++|-+=+
T Consensus 488 ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccccCcccCCCCcEEEEEe
Confidence 33345667778888775544
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=6.7e-07 Score=80.01 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=135.8
Q ss_pred ceeeecccccEEEEEECCCC------------CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCC--
Q 021319 13 SREYTGHKKKVHSVAWNCTG------------TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-- 78 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g------------~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 78 (314)
++.+.-|+..|+.|.|+|.. -.||+++-.|.|.+||.... .....+..|.+++.+++|-+..
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----SVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh----hhhhhhcCCCcchhheeeeeccCc
Confidence 45566799999999998731 25788888999999998653 2334677889999999997643
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEcc-CCCEEEEEeCCCcEEEEEcc-CCeE---e--eeeccC
Q 021319 79 -ADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKP-DGTHIAVGNRDDELTILDVR-KFKP---I--HRRKFG 149 (314)
Q Consensus 79 -~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~---~--~~~~~~ 149 (314)
.++++.-..-.++-+|+..+|...-......++.. +.+.| |.+.+.+-+..|.+.+.+.- ...+ . ..++.+
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 25677777778999999999987655554445544 66666 44555555555555544431 1110 0 011110
Q ss_pred c-------------------------c--eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCC
Q 021319 150 Y-------------------------E--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202 (314)
Q Consensus 150 ~-------------------------~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 202 (314)
. . .-..+|+|.-+..++..-...+.+++++-..++.......+.+.-+.+-|+
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 0 0 112456777777777777888889988777777666655666666677666
Q ss_pred CC--EEEEeeCCCeEEEeeC
Q 021319 203 GR--YFAVGSADSLVSLWDI 220 (314)
Q Consensus 203 ~~--~l~t~~~dg~i~vwd~ 220 (314)
++ .|++.-.||.+.+|-.
T Consensus 284 ~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CCcceEEEEecCCeEEEEEe
Confidence 54 5788888998888854
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=3.8e-06 Score=68.18 Aligned_cols=205 Identities=18% Similarity=0.165 Sum_probs=129.6
Q ss_pred CCcEEEEeCCCCceeeeEEecCce--EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEE
Q 021319 88 DKTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
+++|..+|.++|+..-........ ......+++..+++++.++.+..+|..+.+.+.+.....++.... ...+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence 688999999999887776653211 111133467778888899999999999999887766544332222 33455666
Q ss_pred EEcCCceEEEEeCCCCCceeee-eeccc---ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccC----e-
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTV-VAHTA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP----V- 236 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~---~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~----v- 236 (314)
+...++.+..++..+.+.+... ..... .........++..++.+..++.|..+|+++++.+..+.....+ +
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 6767889999998888776653 22211 1112222223778888888999999999999988776543311 1
Q ss_pred ------EEEEEccCCcEEEEecCCce-EEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcc
Q 021319 237 ------RTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK 298 (314)
Q Consensus 237 ------~~~~~sp~~~~l~s~s~d~~-v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~ 298 (314)
..+.+ .++ .+..++.++. +.+ |..+++.+...+ -.....+ ..+++..|+.++.++.+
T Consensus 161 ~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 161 SFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp EETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEE
T ss_pred eecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEE
Confidence 22222 344 6666777775 555 999999775443 2233332 34566777777766433
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.1e-08 Score=80.83 Aligned_cols=249 Identities=19% Similarity=0.180 Sum_probs=164.6
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE-E---ecCceEEEEEccCCCEEEEEeC-CCcEEEEEcc
Q 021319 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-E---LSGENINITYKPDGTHIAVGNR-DDELTILDVR 138 (314)
Q Consensus 64 ~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~ 138 (314)
.|.+.|+-+.- ...+++.+++-||.++.|-...-.-+... . +.+.+..++.+-++.++.+... |..++++|+.
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 36666665543 33579999999999999964321111111 1 1123345667778888888777 9999999999
Q ss_pred CCeEeeeeccCcceeeEEeccC-C----CeEEEEcCCceEEEEeCCCC--CceeeeeecccceEEEEECCCCCEEEEeeC
Q 021319 139 KFKPIHRRKFGYEVNEIAWNMT-G----EMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (314)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~ 211 (314)
+...+.-++.......+.|... | ...+....++.+.+++-... +....-..|..+|.++.++|.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8876655555544444444322 2 22333456788888886432 222333468899999999999999999999
Q ss_pred CCeEEEeeCCC-cEEEE--------------EeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec---
Q 021319 212 DSLVSLWDISE-MLCVR--------------TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--- 273 (314)
Q Consensus 212 dg~i~vwd~~~-~~~~~--------------~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~--- 273 (314)
.|.|..|.... .+... .+...+....++.|+|++..+++-+.|..|+++...+|++++.+.-
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999999863 11111 1122334578899999999999999999999999999987654420
Q ss_pred ------c-------------------------CccceeEEcCCCCeeEEEecCCcccc-cc-cceEEeccccCC
Q 021319 274 ------R-------------------------AAMNSVEWNPKYNLLAYAGDDKNKYQ-AD-EGVFRIYGFENA 314 (314)
Q Consensus 274 ------~-------------------------~~i~~v~~~~~~~~la~~~~d~~~~~-~~-~~~~~~~~~~~~ 314 (314)
+ ..-..+.|--++++|.++.--+-... .+ .-++||+|=+||
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ 318 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEA 318 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchh
Confidence 0 11246778888999998874321111 22 234677776553
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=1.3e-08 Score=57.20 Aligned_cols=39 Identities=33% Similarity=0.516 Sum_probs=36.6
Q ss_pred cEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319 223 MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 223 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
++++.++.+|..+|.+++|+|++.+|+|++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=81.08 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=116.5
Q ss_pred EEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-----CceeeeeecccceEEEE
Q 021319 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVAHTAGCYCIA 198 (314)
Q Consensus 124 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~~i~ 198 (314)
++.+.+..+-+-|+.+... ........+..+.|...++.++.++.+|.|..+|++.. .+. ...-|...++++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhhh
Confidence 3444555667777766432 12234456777788888999999999999999998654 222 2234888899987
Q ss_pred ECC-CCCEEEEeeCCCeEEEeeCCCcEE---EEEeeecccC--eEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 199 IDP-MGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 199 ~~~-~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
.-. ++++|.+.+-+|+|++||++-.+| +.++++|-.. -.-+-..|....+++++.|...++|.++.|.++.+++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 788899999999999999998777 7788777432 2223456788899999999999999999999998876
Q ss_pred ccC-----ccceeEEcC
Q 021319 273 CRA-----AMNSVEWNP 284 (314)
Q Consensus 273 ~~~-----~i~~v~~~~ 284 (314)
... -+-+|+|..
T Consensus 386 f~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFDS 402 (425)
T ss_pred CCCccccccccceehhc
Confidence 533 245666654
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=77.24 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=108.7
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCc----eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEc---cCCeEee
Q 021319 72 LCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV---RKFKPIH 144 (314)
Q Consensus 72 l~~~~~~~~~l~s~~~D~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~ 144 (314)
...++ .+.+++.+..++...+++.+... ............++.+..+...+.++..-|.+.-+|. ....+..
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 34444 35788888877777676654332 2222333444556666667666666665555554443 3333333
Q ss_pred eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319 145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~ 223 (314)
..-+-.-+..++++|++..++++..|+.|++-.++.--.+..+ .||..-|..+++-++ +.|++++.|+++++||..++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 3334445788999999999999999999999988765555554 479999999998764 45899999999999999999
Q ss_pred EEEEEe
Q 021319 224 LCVRTF 229 (314)
Q Consensus 224 ~~~~~~ 229 (314)
+++.++
T Consensus 226 k~L~t~ 231 (390)
T KOG3914|consen 226 KLLDTC 231 (390)
T ss_pred Cccccc
Confidence 887665
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=2.5e-06 Score=67.97 Aligned_cols=201 Identities=16% Similarity=0.213 Sum_probs=107.4
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceee-EEee-cCCCCEEEEEEcCCC-----CCEEEEEeCCCcEEEE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELR-GHADSVDQLCWDPKH-----ADLIATASGDKTVRLW 94 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~~~~-----~~~l~s~~~D~~v~iw 94 (314)
.=+.++||||+..||.+...|+|+++|+.....-.+.. .... .-..+|-.+.|.+.. ...|+.-.-+|.++-+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45678999999999999999999999986311100000 0011 123456666664322 2234455566777766
Q ss_pred eCCCC-----ceeeeEEe----cCceEEEEEccCCCEEEEEeCCCc-----------EEEEEccCCeEeeeeccCcceee
Q 021319 95 DARSG-----KCSQQAEL----SGENINITYKPDGTHIAVGNRDDE-----------LTILDVRKFKPIHRRKFGYEVNE 154 (314)
Q Consensus 95 d~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~ 154 (314)
-+..+ +....+.+ ...+.++.++|..++|++|+.... +..|.+-+..|- ..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py---------yk 195 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY---------YK 195 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc---------EE
Confidence 54221 11222222 234557889999999988875322 222222111110 00
Q ss_pred EEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc
Q 021319 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 234 (314)
Q Consensus 155 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 234 (314)
.........-...... .++.+...+...........|..|.+||||+.||+...+|.|.+|++......+..+..+.
T Consensus 196 ~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 196 QVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred EccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 0000000000000011 1111111111101112345789999999999999999999999999988777666544443
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.1e-08 Score=92.34 Aligned_cols=259 Identities=16% Similarity=0.265 Sum_probs=166.9
Q ss_pred eeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCC-cEE
Q 021319 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-TVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~-~v~ 92 (314)
+.+..|...-+|++|+.+.+.|+.|+..|.|+++++.++. ......+|..+|+-+.-+-++...|.+++... -..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCchHH
Confidence 4567788899999999999999999999999999998643 22246789999998877666655555555444 456
Q ss_pred EEeCCC-CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc-----CcceeeEEeccCCCeEEE
Q 021319 93 LWDARS-GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GYEVNEIAWNMTGEMFFL 166 (314)
Q Consensus 93 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 166 (314)
+|+... +..... -.+..++.|+.....-++|+......+||+.+..++.++.. .+.-+...|+|+...++
T Consensus 1171 LW~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred HhccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 898753 111111 12233455665555556777778899999998776655432 24457778899888765
Q ss_pred EcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCc
Q 021319 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 246 (314)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 246 (314)
.+| .+|+.+..+.+..+....- --.-.|+|.|..++..+ .|||+++.+.++.....+ -..+.|+..|.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCcc
Confidence 344 3577655444443322110 01225899999888664 589999988777654433 46688999998
Q ss_pred EEEEec--CC---------------ceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEE
Q 021319 247 YIASAS--ED---------------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 247 ~l~s~s--~d---------------~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~ 292 (314)
.+...- +| ...+-++....+.+.+++.+-.+..++-.|...+|+..
T Consensus 1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 765432 11 11233333334445555555566677777776666554
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=2.3e-05 Score=68.76 Aligned_cols=252 Identities=13% Similarity=0.114 Sum_probs=144.7
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCc
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~ 110 (314)
+..++.++.++.+..+|.+++..-+ ...+.+ .+.+ .... +..++.+..++.+.-+|..+|+..-.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W--~~~~~~---~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAW--QTKVAG---EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcc--cccCCC---ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 3456667788999999887654322 222222 1111 1111 23566778899999999999987655543322
Q ss_pred eEEEE--Ecc--CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc--------eeeEEecc--CCCeEEEEcCCceEEEE
Q 021319 111 NINIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--------VNEIAWNM--TGEMFFLTTGNGTVEVL 176 (314)
Q Consensus 111 ~~~~~--~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~g~~~~~ 176 (314)
...+. .+| .+..++++..++.+..+|..+.+.+.......+ ...+..+| .+..++++..+|.+..+
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 11100 011 234577778888999999888776554332111 00011111 24556667778899988
Q ss_pred eCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecCCc
Q 021319 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDL 255 (314)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~d~ 255 (314)
+..+.+.+-.... .....+.. .+..++.++.+|.+..+|..+++.+-....... ...+... .+.+|+.++.||
T Consensus 272 d~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 272 DLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred ECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 8877665433221 11111222 355677778899999999998876543221111 1111111 256778899999
Q ss_pred eEEEEECCCCCeEEEEecc-Cccce-eEEcCCCCeeEEEecCCccc
Q 021319 256 FIDISNVHTGRTVHQIPCR-AAMNS-VEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 256 ~v~v~~~~~~~~~~~~~~~-~~i~~-v~~~~~~~~la~~~~d~~~~ 299 (314)
.+++.|..+|+.+.+.... ..+.+ -.. .+..|..++.|+.+|
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVY 389 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEE
Confidence 9999999999988776532 22221 111 234566678776555
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=8.1e-05 Score=59.54 Aligned_cols=233 Identities=16% Similarity=0.154 Sum_probs=124.2
Q ss_pred EEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC---EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 26 v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
++.+.+|+.||.- .|..|.|=.....-...+..... .+++ =..++|+|++ .+||.+...|+|+++|+....+-
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEec--CCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence 4556778766655 46777775443322222222222 2222 3579999984 69999999999999998754322
Q ss_pred eeEE-------ecCceEEEEEccC------CCEEEEEeCCCcEEEEEc-----cCCeEeeeec----cCcceeeEEeccC
Q 021319 103 QQAE-------LSGENINITYKPD------GTHIAVGNRDDELTILDV-----RKFKPIHRRK----FGYEVNEIAWNMT 160 (314)
Q Consensus 103 ~~~~-------~~~~~~~~~~~~~------~~~l~~~~~d~~i~i~d~-----~~~~~~~~~~----~~~~~~~~~~~~~ 160 (314)
.... ....+..+.|.+- ...|++-..+|.++-+-+ ...+..+... .+..+..+.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 1111 1112222334321 124445555666555543 2233333332 2356889999999
Q ss_pred CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE--EEEeeCCCe------EEEeeCCCcEEEEEeeec
Q 021319 161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY--FAVGSADSL------VSLWDISEMLCVRTFTKL 232 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~t~~~dg~------i~vwd~~~~~~~~~~~~~ 232 (314)
.+.+++++....- ... -..-..++++-.+-.+..+ .++...|+. -.+|.+-+....-.....
T Consensus 159 h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 159 HRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred CCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 9888887653220 000 0011122222222111111 112222221 123333222111111123
Q ss_pred ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
...|..++.||||..||+...+|.+.+|++..-+..+..+
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 4568999999999999999999999999998877776654
No 304
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.00023 Score=61.94 Aligned_cols=217 Identities=18% Similarity=0.222 Sum_probs=155.1
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC---CCcEEEEEccCCeEeeee
Q 021319 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRR 146 (314)
Q Consensus 70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~ 146 (314)
..++.++.+....+....+..|.+.|..+.++............++++++++.+.++.. ++.+.+.|..+.+.....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 45667777666777777789999999888887777766667778999999988887765 688999999888887776
Q ss_pred ccCcceeeEEeccCCCeEEEEc-CCceEEEEeCCCCCcee-e---eeecccceEEEEECCCCCEEEEeeCC---CeEEEe
Q 021319 147 KFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD-T---VVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLW 218 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~t~~~d---g~i~vw 218 (314)
..+.....+++.|+++.+++.. .++.+.+++........ . ...-......++++|+|..+.+.... +.+...
T Consensus 157 ~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 157 PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 5554448899999999665554 78899998865433221 1 11223345788999999966555443 589999
Q ss_pred eCCCcEEEEEeeeccc-CeEEEEEccCCcEEEEecC-CceEEEEECCCCCeEEEEecc----CccceeEEcCCC
Q 021319 219 DISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKY 286 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~-d~~v~v~~~~~~~~~~~~~~~----~~i~~v~~~~~~ 286 (314)
|..++........... ....+..+|+|.++..... .+.+.+.|..+......+... ..+..+++.+..
T Consensus 237 d~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 237 DTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred eCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 9988766554111111 3456889999999998854 488999999988777665432 236666666643
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=1.6e-07 Score=73.41 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC------------c-eEEEEEccCCCEEEEEeCCCcEEEE
Q 021319 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG------------E-NINITYKPDGTHIAVGNRDDELTIL 135 (314)
Q Consensus 69 v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~l~~~~~d~~i~i~ 135 (314)
+..+.+.. ...|+++..++.+.......+.+....+-.. + .-+-..+.-++-++++..|+.+.++
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 34444433 2456666666666665554444432221111 1 1111123346778999999999999
Q ss_pred EccCCeEeeeeccCc--ceeeEEeccCCCeEEEEcCCceE------EEEeCCCCCceeeeeecccceEEEEECCCCC-EE
Q 021319 136 DVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTV------EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YF 206 (314)
Q Consensus 136 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l 206 (314)
+.+....+.+..... ...+..+...++ ++.+.+-|.+ ++|++++.+.+..-......+++++-+|.-+ .+
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred echHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 987632221111000 000111111222 2333333433 4444433222111111223488899998654 56
Q ss_pred EEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccC-CcEEEEecCCceEEEEECCC
Q 021319 207 AVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 207 ~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~ 264 (314)
++|+.||.+-+||++.... ...++.|+.++..+.|+|. +..|+++|+||.+.-||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 7888899999999987643 3456789999999999986 67899999999999999874
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=77.17 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=103.7
Q ss_pred ccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 19 H~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
-++.|.+++|...++++..|...|.|-..|+.++.++.......--|..+|+++..-....+.|++.+.+|.|++||.+.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 35689999999989999999999999999998775554444444568999998876553456888999999999999987
Q ss_pred Cce---eeeEEecCce---EEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce
Q 021319 99 GKC---SQQAELSGEN---INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152 (314)
Q Consensus 99 ~~~---~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 152 (314)
-++ +.+.+.+.+. +-+.+.+....+++++.|=..++|.++..+.+..+..+...
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA 390 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcc
Confidence 666 5555443322 33556777788888999999999999999888877765443
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.6e-06 Score=68.07 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=131.4
Q ss_pred eeeecccccEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 14 ~~~~gH~~~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
..+.+|...|.+++|||..+ ++..++-+..|+|.|+++.. ....+..| .++.+.+|..++.++|..|...|.|.
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 35678889999999999988 68889999999999998643 22223344 77999999999889999999999999
Q ss_pred EEeCCCCceee---eEEec-CceEEEE------EccCCCEEEEEeCCCcEEEEEccC--CeEeeeeccC--cceeeEEec
Q 021319 93 LWDARSGKCSQ---QAELS-GENINIT------YKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKFG--YEVNEIAWN 158 (314)
Q Consensus 93 iwd~~~~~~~~---~~~~~-~~~~~~~------~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~--~~~~~~~~~ 158 (314)
++|.+.-+-.. ..+.. .....++ ..+.+.+++.... .+..|.... ..+....+.+ ....+..++
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~ 339 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYH 339 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeec
Confidence 99998653211 11111 1122222 2233444444433 233443321 1112212221 122222333
Q ss_pred cCCCeEEEEcCCc-------eEEE-EeCCCCCceeee-eecccc-------eEEEEECCCCCEEE-EeeCCCeEEEeeCC
Q 021319 159 MTGEMFFLTTGNG-------TVEV-LTYPSLRPLDTV-VAHTAG-------CYCIAIDPMGRYFA-VGSADSLVSLWDIS 221 (314)
Q Consensus 159 ~~~~~~~~~~~~g-------~~~~-~~~~~~~~~~~~-~~~~~~-------i~~i~~~~~~~~l~-t~~~dg~i~vwd~~ 221 (314)
+..+.+++..... .+-. .+...+.++-.. ..+-+. -..+.-.+++++++ +++.-..+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 3334333332210 0000 011111111100 011000 01222234555544 56666789999999
Q ss_pred CcEEEEEeeecccCeEEEEEcc--CCcEEEEecCCceEEEEEC
Q 021319 222 EMLCVRTFTKLEWPVRTISFSH--TGDYIASASEDLFIDISNV 262 (314)
Q Consensus 222 ~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~s~d~~v~v~~~ 262 (314)
+...++++. .+.+|.+++... .+.||+.-.+| .++|+..
T Consensus 420 s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~ 460 (463)
T KOG1645|consen 420 SFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDD-RVHIYKN 460 (463)
T ss_pred hhheeeecc-cCcceeecceeecCCcchhhheecc-eEEEEec
Confidence 999998885 446888887543 24566655444 5666643
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2e-05 Score=71.69 Aligned_cols=201 Identities=9% Similarity=0.135 Sum_probs=130.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc-----EEEEeC
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDA 96 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~-----v~iwd~ 96 (314)
.|+| |++.+..++-|+.||.|-+.+-.- ..-..+..+...+...-|..++.++|+|.+.|+. ++|||+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~-----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF-----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc-----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 5555 468889999999999987775321 1112445566653333344455568888887754 899997
Q ss_pred CCC------cee---eeEEec-----CceEEEEEccCCCEEEEEeCCCcEEEEEccCC-----eEeeeeccCcceeeEEe
Q 021319 97 RSG------KCS---QQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAW 157 (314)
Q Consensus 97 ~~~------~~~---~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~ 157 (314)
..- .|. +..+.. .....++.+.+-+.+|+|-.+|.|..+...-. +.........++..+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 533 233 222211 22345778888899999999999998854211 11112233567899999
Q ss_pred ccCCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (314)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 230 (314)
..++...++.....+|..|.+....|.. .+..|+...+|..+++.-..+++++. ..+.+||.+....-.+|.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 8888875666666778888876444433 35677888999999875554665554 459999987655545554
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-06 Score=69.58 Aligned_cols=194 Identities=12% Similarity=0.228 Sum_probs=127.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeE------------------eeeeccCcceeeEEeccCC--CeEEEEcC
Q 021319 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKP------------------IHRRKFGYEVNEIAWNMTG--EMFFLTTG 169 (314)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 169 (314)
.+.++.|..-|.+|++|...|.+.++.-....- +...+....+..+.|..++ ..+++.+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 345678888899999999999999987544320 0011111235667775443 56888899
Q ss_pred CceEEEEeCCCC------------------C-ce-----------------------eee-eecccceEEEEECCCCCEE
Q 021319 170 NGTVEVLTYPSL------------------R-PL-----------------------DTV-VAHTAGCYCIAIDPMGRYF 206 (314)
Q Consensus 170 ~g~~~~~~~~~~------------------~-~~-----------------------~~~-~~~~~~i~~i~~~~~~~~l 206 (314)
+.++++|..... . ++ +.+ ..|..-+++++++.|...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 999999975321 0 00 001 2366678899999988887
Q ss_pred EEeeCCCeEEEeeCCCc---EEEEEeeecc-----cCeEEEEEccCC-cEEEEecCCceEEEEECCCCCe------EEE-
Q 021319 207 AVGSADSLVSLWDISEM---LCVRTFTKLE-----WPVRTISFSHTG-DYIASASEDLFIDISNVHTGRT------VHQ- 270 (314)
Q Consensus 207 ~t~~~dg~i~vwd~~~~---~~~~~~~~~~-----~~v~~~~~sp~~-~~l~s~s~d~~v~v~~~~~~~~------~~~- 270 (314)
.++ .|=.|.+|++.-. .-+-.++.+. .-|++..|+|.. ..+...+.-|.|++-|++...+ +..
T Consensus 188 lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 188 LSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred eec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 766 4778999998632 1222233332 347788899975 5566778889999999874321 111
Q ss_pred -E---ec------cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 271 -I---PC------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 271 -~---~~------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
+ .+ -.+|..+.|+|+|+++++-+- -+++||+++.
T Consensus 267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvkiwDvnm 310 (460)
T COG5170 267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVKIWDVNM 310 (460)
T ss_pred ccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEEEEeccc
Confidence 1 11 136889999999999976543 4899999864
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.3e-06 Score=67.83 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=70.4
Q ss_pred EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC-CEEEEEeCCCcEEEEEccC
Q 021319 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRK 139 (314)
Q Consensus 61 ~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 139 (314)
-+.+|...|.+++++|.+..++..++.+..|+|.|+.+..++..........+++|..|. +++..|...|.+.+||++.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 356788889999999987668999999999999999999888888888888999998765 5677888999999999987
Q ss_pred Ce
Q 021319 140 FK 141 (314)
Q Consensus 140 ~~ 141 (314)
..
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 64
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=6.2e-06 Score=72.05 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC
Q 021319 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 265 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~ 265 (314)
..+..+.|++++|+.+.++.|+.||.|.+||..... .++......+..++|+|+|.+++.|+.-|.+.+||++-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 466789999999999999999999999999987663 233345566788999999999999999999999998754
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.51 E-value=8.3e-05 Score=70.23 Aligned_cols=236 Identities=16% Similarity=0.255 Sum_probs=136.7
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (314)
Q Consensus 67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 146 (314)
+.|.++.|..+. +-++.+..+|.|.+-|..+....-.......+.+++|+||...++..+.++++.+.+ ..+.++...
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 578888887664 455567788899999988777665556678888999999999999998877766643 333333221
Q ss_pred ccC------cceeeEEeccCCCeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEE-----eeCCCe
Q 021319 147 KFG------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAV-----GSADSL 214 (314)
Q Consensus 147 ~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t-----~~~dg~ 214 (314)
... ...-.+.|-.....+ -+..|+........ .+.......+ ..=+.|.|--||.++|+ ...-..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecchhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCcee
Confidence 110 111223332211111 11111111111000 0000000011 12356889999999988 333368
Q ss_pred EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe---cCCceEEEEECCC---CCeEEEEeccC-ccceeEEcCCCC
Q 021319 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHT---GRTVHQIPCRA-AMNSVEWNPKYN 287 (314)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~---s~d~~v~v~~~~~---~~~~~~~~~~~-~i~~v~~~~~~~ 287 (314)
|++||-. +..-..-.....--.+++|-|.|..+|+- +.|..|.++.-.. |.-....+... ++..++||-+..
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999976 32211111222335678999999999976 3456788887532 22222233333 499999999999
Q ss_pred eeEEEecCCcccccccceEEeccccC
Q 021319 288 LLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 288 ~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
.||.--.++. ..-+++|-+-|
T Consensus 303 iLAv~~~~~e-----~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLE-----NSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccc-----cceEEEEEecC
Confidence 9998554442 12377776643
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=4.7e-05 Score=68.32 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=111.6
Q ss_pred CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeC----CCcEEEEEccCCeEeeeeccCcceeeEEeccCCCe
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR----DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (314)
.+.+.+.|..+.+...+....+..-.+.++++|+++++.+. ..++...+......+..+.... ..++.++|+.
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkdGK~ 290 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKAGKF 290 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhCCCE
Confidence 45666778777777777777776677889999999988853 2234444433222111111110 0123456666
Q ss_pred EEEEcCCceEEEEeCCC----CCceeeeeecccceEEEEECCCCCEEEEe-eCCCeEEEeeCCCcEE------------E
Q 021319 164 FFLTTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLC------------V 226 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg~i~vwd~~~~~~------------~ 226 (314)
..+ .++.+.++|... ...+..+..-...+..++++|||++++++ ..+.+|.|.|+.+.+. +
T Consensus 291 ~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 291 KTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred EEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 555 367888998776 22333333445667899999999987655 4578999999987552 2
Q ss_pred EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 227 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 227 ~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
.+.+. .......+|+++|....|---|..|-.|++.+
T Consensus 369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33322 22345688999999888888999999999876
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=8.6e-07 Score=78.94 Aligned_cols=197 Identities=17% Similarity=0.314 Sum_probs=132.9
Q ss_pred ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe----EeeeeccCcceeeEEeccC--CCeEEEEcCCceEEEEeCC-
Q 021319 107 LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWNMT--GEMFFLTTGNGTVEVLTYP- 179 (314)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~- 179 (314)
..+....+..+|.|+-+++++.-| +.+.|+..+- .++.+ ..-++-.+.|++. -.+-++......-.+|.+.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-CcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 344455677888898888887765 4455654432 22221 1234556677654 4677777777777777763
Q ss_pred -CCCce-eeeeecccceEEEEECCCC-CEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCc
Q 021319 180 -SLRPL-DTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDL 255 (314)
Q Consensus 180 -~~~~~-~~~~~~~~~i~~i~~~~~~-~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~ 255 (314)
..+.+ ..+.+|..+++.+-|+|.. ..+|+++.|-.++.||++.... +.....-......++|+-....+...+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 33333 2346889999999999864 5799999999999999987643 333323334567799997766666667777
Q ss_pred eEEEEECCCCCe-EEEEe-ccCccceeEEcCC-CCeeEEEecCCcccccccceEEeccccC
Q 021319 256 FIDISNVHTGRT-VHQIP-CRAAMNSVEWNPK-YNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 256 ~v~v~~~~~~~~-~~~~~-~~~~i~~v~~~~~-~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
.|++||...|.. +..++ +-..|++++|+.- ...+.+.+.| |++|-|+.++
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d--------~tvkfw~y~k 233 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND--------GTVKFWDYSK 233 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC--------Cceeeecccc
Confidence 799999987654 44443 3456889999863 4556667766 6899998865
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3e-06 Score=76.19 Aligned_cols=132 Identities=21% Similarity=0.315 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEE
Q 021319 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 239 (314)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 239 (314)
.+..+++++-.|.+++++....- .+...|+.. +.+|.++++|+.||+|.|--+-+.....++ ....++.+|
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksi 118 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSI 118 (846)
T ss_pred hcceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeE
Confidence 36788889999999998875431 233344443 668999999999999999988776554444 456789999
Q ss_pred EEccC-----CcEEEEecCCceEEEEECC-CCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCcccccccceEEeccc
Q 021319 240 SFSHT-----GDYIASASEDLFIDISNVH-TGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 311 (314)
Q Consensus 240 ~~sp~-----~~~l~s~s~d~~v~v~~~~-~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~ 311 (314)
+++|+ .+.+++|+.-| +.++.-. -|....... ..++|.++.|. |+++|.+++++ +|+|+.
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G---------v~vyd~ 186 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG---------VKVYDT 186 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC---------cEEEec
Confidence 99998 57899999998 6666532 122222222 25789999995 89999999887 677776
Q ss_pred c
Q 021319 312 E 312 (314)
Q Consensus 312 ~ 312 (314)
+
T Consensus 187 ~ 187 (846)
T KOG2066|consen 187 P 187 (846)
T ss_pred c
Confidence 4
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.4e-07 Score=85.39 Aligned_cols=212 Identities=15% Similarity=0.219 Sum_probs=146.5
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC--cEEEEEcc
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD--ELTILDVR 138 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~--~i~i~d~~ 138 (314)
+..|....+|++|+.. .+.|+.|+..|.|+++++.+|......+.++.. ..+.-+.+|..+.+.+.-. ...+|++.
T Consensus 1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4567788899999865 578999999999999999999765554443333 3355566777776554333 46788876
Q ss_pred C-CeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeee----ecccceEEEEECCCCCEEEEeeCCC
Q 021319 139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV----AHTAGCYCIAIDPMGRYFAVGSADS 213 (314)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~t~~~dg 213 (314)
. +.+.+.+. +..++.|+..-..-++++......+|+.++..++.++. +..+.-++..|+|+.+++. .||
T Consensus 1176 s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred cccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence 4 23333322 34567777666666777777888999998877666532 2344457889999999887 566
Q ss_pred eEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCee
Q 021319 214 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 289 (314)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l 289 (314)
.+||++....++.|........ =.|+|.|.-++.-| -|||++|-+.++..+.- .-..|.||..|+.+
T Consensus 1250 --vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVM 1316 (1516)
T ss_pred --eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccch
Confidence 4899987766666654443222 24999999888665 48999998888876531 24567888877654
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=4.9e-06 Score=75.90 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=127.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEE
Q 021319 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198 (314)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~ 198 (314)
++..++.|+....+..+|+++.+.......+..- ...+..++..+++|...|+|.+-+..+.+.+.++..|.+.+..++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 4556777888888899999988776654443221 333455678899999999999999999999999999999888776
Q ss_pred ECCCCCEEEEeeC---------CCeEEEeeCCCcEEEEEeeecccCeEEEEEccC-CcEEEEecCCceEEEEECCC---C
Q 021319 199 IDPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHT---G 265 (314)
Q Consensus 199 ~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~d~~v~v~~~~~---~ 265 (314)
+. |+.|++++. |..|+|||++.++.+.-+.-+..+ .=+.|+|. -..+|.+|..|...+-|..+ .
T Consensus 225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 64 778887765 446899999877655433322222 34678887 46788889999999988443 1
Q ss_pred --CeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 266 --RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 266 --~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
......++..-+.++.+++++..||.+..++
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 2233334555699999999999999998663
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=8.3e-06 Score=74.50 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=124.3
Q ss_pred CCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC
Q 021319 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG 109 (314)
Q Consensus 31 ~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~ 109 (314)
+++.++-|+....+..+|+.+.... +...-+ ..|.-+.. ++.++.+|..-|+|-+-|.++-+.+..+..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~-----r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET-----RTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceee-----eeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 3456677776666667776542211 111111 12555554 34678899999999999999988877776554
Q ss_pred ceEEEEEccCCCEEEEEeC---------CCcEEEEEccCCeEeeeeccCcceeeEEeccCC-CeEEEEcCCceEEEEeCC
Q 021319 110 ENINITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP 179 (314)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 179 (314)
..+ ..|.-.|+.|++++. |.-++|||+|..+.+..+........+.|+|.- ..+++.+..|...+.+..
T Consensus 218 ~si-SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 218 GSI-SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred cce-eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 443 345667888888765 556899999998877766666556667777764 567778888888888732
Q ss_pred C-CCc-eeeee--ecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319 180 S-LRP-LDTVV--AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (314)
Q Consensus 180 ~-~~~-~~~~~--~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~ 220 (314)
. ..| ..... .....+..++++++++.||.|..+|.|.+|.-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1 222 22222 23345899999999999999999999999974
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=0.00021 Score=67.66 Aligned_cols=196 Identities=15% Similarity=0.226 Sum_probs=126.8
Q ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEe-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC---
Q 021319 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLWDA--- 96 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~--- 96 (314)
+.|.++.|-.+...++-+..+|.|.+-|.++.. .++ ..-...|.+++|+|++ ++++-...++++.+-+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence 589999999999998888889999888765421 222 2345679999999985 68777777778765432
Q ss_pred -CC-----------Ccee--------eeEE----------------------ecCceEEEEEccCCCEEEEEe-----CC
Q 021319 97 -RS-----------GKCS--------QQAE----------------------LSGENINITYKPDGTHIAVGN-----RD 129 (314)
Q Consensus 97 -~~-----------~~~~--------~~~~----------------------~~~~~~~~~~~~~~~~l~~~~-----~d 129 (314)
-. ++.+ .++. ...+...++|.-||.++++.. ..
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 10 0000 0000 112234588999999998832 23
Q ss_pred CcEEEEEccCCeEeee-eccCcceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCc---eeeeeecccceEEEEECCC
Q 021319 130 DELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPM 202 (314)
Q Consensus 130 ~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~ 202 (314)
..|++||-. +..... ......-.+++|-|.|..+++.. .++.|.+|.-...+. ...+.....++..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 689999965 222111 11223446789999998887754 345676765443321 1112223344889999999
Q ss_pred CCEEEE---eeCCCeEEEeeCCCcE
Q 021319 203 GRYFAV---GSADSLVSLWDISEML 224 (314)
Q Consensus 203 ~~~l~t---~~~dg~i~vwd~~~~~ 224 (314)
+..||+ ......|++|-+.+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeE
Confidence 999987 5555569999988764
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.41 E-value=0.00022 Score=62.58 Aligned_cols=257 Identities=10% Similarity=0.019 Sum_probs=144.9
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--------CEE-EEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--------SVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--------~v~-~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
+..+..++.++.|.-+|.+++.. +....+..... .+. .+.. . ++.++.++.++.+.-+|..+|+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCc
Confidence 55677777788888888765432 22222222000 000 1111 1 245667888999999999999876
Q ss_pred eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeE--Eecc--CCCeEEEEcCCceEEEEeC
Q 021319 103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI--AWNM--TGEMFFLTTGNGTVEVLTY 178 (314)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~g~~~~~~~ 178 (314)
-.........+--.. .+..++++..++.+..+|.++.+.+.+.....+.... .-+| .+..++++..+|.+..++.
T Consensus 144 W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 144 WQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 655544432211011 2456777888899999999999887766543211000 0011 2345667778888888887
Q ss_pred CCCCceeeeeecc-c------ceEEEEECC--CCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEE
Q 021319 179 PSLRPLDTVVAHT-A------GCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 249 (314)
Q Consensus 179 ~~~~~~~~~~~~~-~------~i~~i~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 249 (314)
.+.+.+....... . ....+..+| .+..++.++.+|.+..+|..+++.+-+... .. ... ....+..|+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~-~~~--~~~~~~~vy 298 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-GS-VND--FAVDGGRIY 298 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-CC-ccC--cEEECCEEE
Confidence 7665443321100 0 000111122 244666677899999999999876543321 11 111 123466777
Q ss_pred EecCCceEEEEECCCCCeEEEEec-cC-ccceeEEcCCCCeeEEEecCCcccc
Q 021319 250 SASEDLFIDISNVHTGRTVHQIPC-RA-AMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 250 s~s~d~~v~v~~~~~~~~~~~~~~-~~-~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
.++.|+.+...|..+|+.+.+... .. ...+... .+..|..++.|+.++-
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 888999999999999988765431 11 1122222 1344555666665553
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.40 E-value=0.00041 Score=57.12 Aligned_cols=189 Identities=13% Similarity=0.213 Sum_probs=124.6
Q ss_pred EEEcc-CCCEEEEEeCCCc-EEEEEccCCeEeeeeccCcc---eeeEEeccCCCeEEEEcC-----CceEEEEeCC-CCC
Q 021319 114 ITYKP-DGTHIAVGNRDDE-LTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTG-----NGTVEVLTYP-SLR 182 (314)
Q Consensus 114 ~~~~~-~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~-~~~ 182 (314)
++.+| ....++.+-+-|+ ..++|.++.+.......+.. --.-.|+++|..+++.-. .|.|-+|+.. ..+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 55667 4455666666665 77889988877665543221 124678999999988743 5899999997 677
Q ss_pred ceeeeeecccceEEEEECCCCCEEEEeeC------------------CCeEEEeeCCCcEEEEEee----ecccCeEEEE
Q 021319 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGSA------------------DSLVSLWDISEMLCVRTFT----KLEWPVRTIS 240 (314)
Q Consensus 183 ~~~~~~~~~~~i~~i~~~~~~~~l~t~~~------------------dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~ 240 (314)
.+.++..|.-..-.+.+.|||+.|+++.. +-.+.+.|..+++.+.+.. .+...++.++
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa 169 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA 169 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence 78888888888889999999987776621 1124444555666555422 2455789999
Q ss_pred EccCCcEEEEecCCc-------eEEEEECCCCCeEEEEec--------cCccceeEEcCCCCeeEEEecCCcccccccce
Q 021319 241 FSHTGDYIASASEDL-------FIDISNVHTGRTVHQIPC--------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 305 (314)
Q Consensus 241 ~sp~~~~l~s~s~d~-------~v~v~~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~ 305 (314)
++++|..++..=..+ .+-+++ .+..+.-+.. ++=+-+|++++++..+|.++=- +|.
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-------Gg~ 240 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-------GGR 240 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-------CCE
Confidence 999998777553322 233333 2333333221 2347799999999998877744 466
Q ss_pred EEeccc
Q 021319 306 FRIYGF 311 (314)
Q Consensus 306 ~~~~~~ 311 (314)
+.+|+.
T Consensus 241 ~~~~d~ 246 (305)
T PF07433_consen 241 VAVWDA 246 (305)
T ss_pred EEEEEC
Confidence 777754
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=3.2e-06 Score=66.33 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=60.8
Q ss_pred cEEEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 22 KVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 22 ~V~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
.|++++-+|..+ .+++|+.||.+-+||+.... .+.-.+..|+.++..+-|+|.+++.|++++.||++-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 499999888755 56667789999999986532 122246789999999999999999999999999999999764
No 323
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=0.0011 Score=55.55 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=124.6
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeE---eeeecc
Q 021319 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRKF 148 (314)
Q Consensus 73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~ 148 (314)
.|.+..+.++.+--..+.|.-||..+++... +.......+ ......+.++++. ..+.+++...... +...+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeecCCCeEEEEc---cccEEEeccCCceeEEeccccC
Confidence 4556655566677777888888887664322 222222222 3334444333332 2344455433222 111111
Q ss_pred ---CcceeeEEeccCCCeEEEEcC-----------CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-C
Q 021319 149 ---GYEVNEIAWNMTGEMFFLTTG-----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S 213 (314)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g 213 (314)
....+.....++|.+.+.... .|.++.++. .......+..+-...+.|+||||++.|..+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 134567777888888776655 133333332 233333334445567899999999888777665 7
Q ss_pred eEEEeeCCC--cE----EEE-EeeecccCeEEEEEccCCcEEEEecCCc-eEEEEECCCCCeEEEEecc-CccceeEEc-
Q 021319 214 LVSLWDISE--ML----CVR-TFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNVHTGRTVHQIPCR-AAMNSVEWN- 283 (314)
Q Consensus 214 ~i~vwd~~~--~~----~~~-~~~~~~~~v~~~~~sp~~~~l~s~s~d~-~v~v~~~~~~~~~~~~~~~-~~i~~v~~~- 283 (314)
.|.-|++.. +. ... .+.........++...+|.+-+++-.+| .|.+++.. |+++..+..- ..+++++|-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 788887752 11 111 1111233455677778888887666665 89999988 9999887653 678888887
Q ss_pred CCCCeeEEEecC
Q 021319 284 PKYNLLAYAGDD 295 (314)
Q Consensus 284 ~~~~~la~~~~d 295 (314)
|+.+.|...+..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 555555444443
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=3.3e-05 Score=69.81 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=122.8
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee
Q 021319 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (314)
Q Consensus 67 ~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 146 (314)
+.+.+.+++ ...++-|.-+|.|++.+.... . .+...+... ..+|.++++++.||++.|..+-+.+.....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 445555554 358889999999999986532 1 111111111 568999999999999999999888888888
Q ss_pred ccCcceeeEEeccC-----CCeEEEEcCCceEEEEeCCCCCcee--eeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 147 KFGYEVNEIAWNMT-----GEMFFLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 147 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
....++.+++++|+ ...+++++..| +.++.-.-..... .+....++|.++.|. |+++|=++.+| |++||
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 88889999999998 35677777777 6665432221111 233456789999996 77888887776 99999
Q ss_pred CCCcEEEEEeeecccC------eEEEEEccCCcEEEEecCCceEEEEECC
Q 021319 220 ISEMLCVRTFTKLEWP------VRTISFSHTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 220 ~~~~~~~~~~~~~~~~------v~~~~~sp~~~~l~s~s~d~~v~v~~~~ 263 (314)
+...+.+..++..... ...+.|.++.+.++ |-.| .|+|..+.
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGD-SVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCC-eEEEEEEe
Confidence 9988877666543322 34577777655443 4333 45555554
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=2.3e-07 Score=81.18 Aligned_cols=200 Identities=19% Similarity=0.275 Sum_probs=128.6
Q ss_pred cccEEEEEECCCCC--EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeC----CCcEEE
Q 021319 20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVRL 93 (314)
Q Consensus 20 ~~~V~~v~~s~~g~--~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----D~~v~i 93 (314)
...+.|++++.+.+ .++.|.++|.|-+-.+.... .. .....++|..+.++++|++-+.++||.|-. |..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-cc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34678888877654 46778899999887653211 11 122457889999999999987778877633 688999
Q ss_pred EeCCCCc--eeeeEEe----cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 94 WDARSGK--CSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 94 wd~~~~~--~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
||+.++- ......+ ......++|..+.+++.+|.....+.++|+|.............+..+...|-..-+++.
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 9998762 1111111 122336788889999999999999999999843221111111234455556633334455
Q ss_pred cCCceEEEEe-CCCCC-ceeeeeecc----cceEEEEECCCCC-EEEEeeCC-CeEEEeeCC
Q 021319 168 TGNGTVEVLT-YPSLR-PLDTVVAHT----AGCYCIAIDPMGR-YFAVGSAD-SLVSLWDIS 221 (314)
Q Consensus 168 ~~~g~~~~~~-~~~~~-~~~~~~~~~----~~i~~i~~~~~~~-~l~t~~~d-g~i~vwd~~ 221 (314)
..+|.+.+|| ....+ ++..+...+ ..+..+++.|..+ .+++..+| ++|+++|+.
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5699999999 33332 333322111 2378999999754 46666666 689999985
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.00076 Score=60.83 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=142.2
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC----CCCEE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH----ADSVD--QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h----~~~v~--~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~ 105 (314)
+..+..++.|+.|.-.|..+....+ ....... ...+. .+... +...++.++.|+.|.-+|.++|+..-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W--~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLW--RYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhc--eeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 3456667778988888876543222 1111111 00110 11111 1246777888999999999999877665
Q ss_pred EecCce---EEEEEcc--CCCEEEEEe---------CCCcEEEEEccCCeEeeeeccCcc--------------------
Q 021319 106 ELSGEN---INITYKP--DGTHIAVGN---------RDDELTILDVRKFKPIHRRKFGYE-------------------- 151 (314)
Q Consensus 106 ~~~~~~---~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~-------------------- 151 (314)
...... ..+.-.| .+..+++++ .++.+..+|..+.+.+.+.+....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 544331 0111111 124455554 357788899988887766544211
Q ss_pred -e-eeEEeccCCCeEEEEcCCc------------------eEEEEeCCCCCceeeeee--ccc----c---eEEEEE-CC
Q 021319 152 -V-NEIAWNMTGEMFFLTTGNG------------------TVEVLTYPSLRPLDTVVA--HTA----G---CYCIAI-DP 201 (314)
Q Consensus 152 -~-~~~~~~~~~~~~~~~~~~g------------------~~~~~~~~~~~~~~~~~~--~~~----~---i~~i~~-~~ 201 (314)
+ ...+..+.+..++++..++ .+..++..+.+..-.+.. |.. . +.-... .-
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0 0122233456677776554 688888877776554431 110 0 000011 12
Q ss_pred CCC---EEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEE-----------------ecCCceEEEEE
Q 021319 202 MGR---YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS-----------------ASEDLFIDISN 261 (314)
Q Consensus 202 ~~~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-----------------~s~d~~v~v~~ 261 (314)
++. .++.++.+|.+...|.++++.+-..... ...++.+| +...+. ...++.+.-.|
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 333 5778889999999999999877554321 11234445 222221 12468899999
Q ss_pred CCCCCeEEEEecc---------Cccc--eeEEcCCCCeeEEEecCCcccc
Q 021319 262 VHTGRTVHQIPCR---------AAMN--SVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 262 ~~~~~~~~~~~~~---------~~i~--~v~~~~~~~~la~~~~d~~~~~ 300 (314)
..+|+.+.+.... .+.. .++ ..+..+..++.|+.+|-
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRA 420 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEE
Confidence 9999999877643 1111 111 13456666677766554
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00036 Score=61.48 Aligned_cols=175 Identities=16% Similarity=0.223 Sum_probs=95.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (314)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 189 (314)
.+..+.++|+|+.++++ .+|...++.....+... ........|.. .+.+++...++++.++.--..+....+..
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC
Confidence 35578999999999994 56777777744333222 23456678888 44566666688888864322222112211
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCC----
Q 021319 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG---- 265 (314)
Q Consensus 190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~---- 265 (314)
+..+..|-- |.+|+..+.+ .|.+||..+++.+.++... +|..+.|++++.++|-.+.+. +.+.+....
T Consensus 108 -~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 -PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-IYILKYNLEAVAA 179 (443)
T ss_dssp -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HHHHHH
T ss_pred -CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe-EEEEEecchhccc
Confidence 112222222 7777777655 8999999999888887533 389999999999999998774 666554332
Q ss_pred -------CeEEEEec-cCccceeEEcCCCCeeEEEecCCcccc
Q 021319 266 -------RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 266 -------~~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
..+..+.- ..+|.+..|.-+ .|.+....+=.|-
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkYl 220 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKYL 220 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEEE
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEEE
Confidence 02222222 568999999765 5556665566673
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00021 Score=64.30 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred EccCCCEEEEEeCCCcEEEEEccC-----CeEeeeeccCcceeeEEeccCCCeEEEEcC-CceEEEEeCCCCCc------
Q 021319 116 YKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRP------ 183 (314)
Q Consensus 116 ~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~------ 183 (314)
+.++|++..++ ++.+.++|.++ .+.+..+..+.....+..+|+|+++++++. +.++.+++....+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 34578777663 57899999988 566677778888999999999999887764 88999999876442
Q ss_pred ------eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC----------cEEEEEeeecccCeEEEE------E
Q 021319 184 ------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----------MLCVRTFTKLEWPVRTIS------F 241 (314)
Q Consensus 184 ------~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~------~ 241 (314)
..+.. -...+...+|+++|....+-..|..|..||+.+ ...++++..|-. +-.+. -
T Consensus 362 ~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~-pgh~~~~~g~t~ 439 (635)
T PRK02888 362 KPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ-PGHNHASMGETK 439 (635)
T ss_pred CccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc-cceeeecCCCcC
Confidence 11111 134567889999998888888999999999876 233443322211 12222 2
Q ss_pred ccCCcEEEEec
Q 021319 242 SHTGDYIASAS 252 (314)
Q Consensus 242 sp~~~~l~s~s 252 (314)
.|+|++|++..
T Consensus 440 ~~dgk~l~~~n 450 (635)
T PRK02888 440 EADGKWLVSLN 450 (635)
T ss_pred CCCCCEEEEcc
Confidence 57888888764
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0005 Score=62.95 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=119.7
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEe-cCceEE-EEEccCCCEEEEEeCCC-----cEEEEEccCCe----
Q 021319 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENIN-ITYKPDGTHIAVGNRDD-----ELTILDVRKFK---- 141 (314)
Q Consensus 73 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~---- 141 (314)
+|++. +..++-|+.||.|-+.+..-.. ...+.. ...++. +....+.++|++.+.|+ .+++|++...+
T Consensus 30 c~~s~-~~~vvigt~~G~V~~Ln~s~~~-~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSS-TGSVVIGTADGRVVILNSSFQL-IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCC-CceEEEeeccccEEEeccccee-eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34554 4588899999999888743221 121111 111222 22223345666655544 48999986532
Q ss_pred --Ee--eee---cc---CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeee--eecccceEEEEECCCCCE-E
Q 021319 142 --PI--HRR---KF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTV--VAHTAGCYCIAIDPMGRY-F 206 (314)
Q Consensus 142 --~~--~~~---~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~--~~~~~~i~~i~~~~~~~~-l 206 (314)
.+ ++. +. ..+...++.+.+-+.+++|-.+|.|..+.-.-.+ -.+.. ....++|+.+++..+++. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 22 111 11 3457788888888999999999999998654322 11222 233568999999988887 3
Q ss_pred EEeeCCCeEEEeeCCCcE-EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 207 AVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 207 ~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
+++. -..|.+|.+.... .++.+..+..++.|.+|++....+++|+.. .+.+|+...-++-..+.
T Consensus 188 Fv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeec
Confidence 3333 4459999987333 245567778889999998876645544443 37888876544444443
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.0011 Score=58.53 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=81.4
Q ss_pred EecCceEEEEEcc-CCCEEEEEe----CCCc----EEEEEccCCeE----eeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319 106 ELSGENINITYKP-DGTHIAVGN----RDDE----LTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172 (314)
Q Consensus 106 ~~~~~~~~~~~~~-~~~~l~~~~----~d~~----i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 172 (314)
..+..++.+.|+. ++..+.+.. .++. -.+|+....+. +.++.....+.+++++|+.+.++.|+.||.
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 3455666777765 344444332 2333 34555544332 233455678899999999999999999999
Q ss_pred EEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~ 222 (314)
+.+|+..... .......-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 283 iiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999975542 23334455678999999999999999999999999863
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.26 E-value=0.0013 Score=57.18 Aligned_cols=252 Identities=12% Similarity=0.112 Sum_probs=132.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCc---------------------------------------eeeEEe
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---------------------------------------VKDIEL 62 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~---------------------------------------~~~~~~ 62 (314)
.|+.+.|+++.-.|+.|...|.|.||......... .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999998763211000 000112
Q ss_pred ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC---------ceEEEEEc-----cCC---CEEEE
Q 021319 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV 125 (314)
Q Consensus 63 ~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~ 125 (314)
....++|.+++.+.- .+++.|..+|++.|.|+|....+....... .+.++.|. .|+ ..+++
T Consensus 83 ~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 344678999998754 499999999999999999887776544433 12234443 333 57788
Q ss_pred EeCCCcEEEEEccC-CeEeeeeccCcceeeEEeccCCCeEEEEcCCc--eEEEEeCCCCCce-ee---eeecccceEEEE
Q 021319 126 GNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG--TVEVLTYPSLRPL-DT---VVAHTAGCYCIA 198 (314)
Q Consensus 126 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~-~~---~~~~~~~i~~i~ 198 (314)
|+..|.+.+|.+-. .. ..+.+..+... ....+. .+..++....++. .. +..-..+ +.
T Consensus 161 GTn~G~v~~fkIlp~~~------g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g---~~ 224 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSN------GRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGLSKG---IS 224 (395)
T ss_dssp EETTSEEEEEEEEE-GG------G-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGGGGT-----
T ss_pred EeCCCCEEEEEEecCCC------CceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhccccC---CC
Confidence 88889888887631 10 00111111000 000111 1111122221111 00 0000000 00
Q ss_pred ECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEc-----cCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319 199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-----HTGDYIASASEDLFIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 199 ~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~ 273 (314)
. ..+++...+..+|++...+.+...+..........+++- ..+..|++-..+|.++++.+..-+.+..+..
T Consensus 225 i----~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 225 I----PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp ------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred c----CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 0 123333446669999998777665544332334445553 3677899999999999999999888877654
Q ss_pred c-----CccceeEEcCCCCeeEEEecC
Q 021319 274 R-----AAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 274 ~-----~~i~~v~~~~~~~~la~~~~d 295 (314)
. ..+....++++|..+...|..
T Consensus 301 ~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred CCccccccccccEECCCCCEEEEeCcc
Confidence 2 235677889999988777644
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.22 E-value=0.0011 Score=58.52 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=117.3
Q ss_pred ccceeeecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 021319 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (314)
Q Consensus 11 ~~~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~ 90 (314)
+..+.+....-..+.+.++|+|++++.++ ||.-.|+.... .... . .+.-..++|.+. +.+|.-....+
T Consensus 23 l~~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~----~r~k--~---~G~g~~~vw~~~--n~yAv~~~~~~ 90 (443)
T PF04053_consen 23 LSVKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA----WRNK--A---FGSGLSFVWSSR--NRYAVLESSST 90 (443)
T ss_dssp ---EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT----TEEE--E---EEE-SEEEE-TS--SEEEEE-TTS-
T ss_pred EEeccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC----Cccc--c---cCceeEEEEecC--ccEEEEECCCe
Confidence 34455655666789999999999988855 78888886321 1111 1 122345788773 45667777889
Q ss_pred EEEE-eCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcC
Q 021319 91 VRLW-DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 91 v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
|+|+ +.. ...............+.. |..|.+.+.+ .|.+||..+.+.+.++.... +..+.|+++++.++..+.
T Consensus 91 I~I~kn~~-~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 91 IKIYKNFK-NEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEEETTE-E-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred EEEEEcCc-cccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 9996 332 221122222222222322 7777777554 89999999999998888663 789999999999888875
Q ss_pred CceEEEEeCCCC----------C-ceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE
Q 021319 170 NGTVEVLTYPSL----------R-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 170 ~g~~~~~~~~~~----------~-~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
+ .+.+++.... + .+..+......|.+..|..+ .++-.... .++.+ -.+.. ..+...+.++.-
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yl 237 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYL 237 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EE
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEE
Confidence 5 5555554221 0 12222222457888888755 44433333 66663 23322 222333456777
Q ss_pred EEEccCCcEEEEecCCceEEEEECC
Q 021319 239 ISFSHTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 239 ~~~sp~~~~l~s~s~d~~v~v~~~~ 263 (314)
+.+.|....+.....|+.+..+.+.
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEccCCEEEEEECCCCEEEEEEC
Confidence 7777877777777788777776543
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.0029 Score=54.67 Aligned_cols=257 Identities=15% Similarity=0.224 Sum_probs=132.6
Q ss_pred CCCCCEEEEe---------eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 021319 29 NCTGTKLASG---------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 29 s~~g~~l~s~---------~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~ 99 (314)
|||+++++-. +..+.+.|+|++++. .. .+......+....|+|++ +.++-. .++.|.+++..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~--~l~~~~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---IT--PLTPPPPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EE--ESS-EETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eE--ECcCCccccccceeecCC-CeeEEE-ecCceEEEECCCC
Confidence 5778776652 234567788887532 22 222225678889999985 566544 4578999988776
Q ss_pred ceeeeEEec------------------CceEEEEEccCCCEEEEEeCCC-cEEEEEc---cCC-e---Eeeeec------
Q 021319 100 KCSQQAELS------------------GENINITYKPDGTHIAVGNRDD-ELTILDV---RKF-K---PIHRRK------ 147 (314)
Q Consensus 100 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~---~~~-~---~~~~~~------ 147 (314)
...+.-... .....+.|+||+++|+....|. .+..+.+ ... . .+..++
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 433221111 1123578999999998765544 2333322 111 0 000000
Q ss_pred ----------------------------cCcceeeEEeccCCCeEEEE-c-C---CceEEEEeCCCCCceeeee-ecccc
Q 021319 148 ----------------------------FGYEVNEIAWNMTGEMFFLT-T-G---NGTVEVLTYPSLRPLDTVV-AHTAG 193 (314)
Q Consensus 148 ----------------------------~~~~~~~~~~~~~~~~~~~~-~-~---~g~~~~~~~~~~~~~~~~~-~~~~~ 193 (314)
...-+..+.|.+++..+++. . . ...+.+++....+...... .....
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 01123456777777633332 1 1 1233344443333211111 11111
Q ss_pred e---EEEEEC-CCC-CEEEEeeCCCeEEE--eeCCCcEEEEEeeecccCeEE-EEEccCCcEE-EEecCC--ceEEEE--
Q 021319 194 C---YCIAID-PMG-RYFAVGSADSLVSL--WDISEMLCVRTFTKLEWPVRT-ISFSHTGDYI-ASASED--LFIDIS-- 260 (314)
Q Consensus 194 i---~~i~~~-~~~-~~l~t~~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l-~s~s~d--~~v~v~-- 260 (314)
+ ....+. +++ .++.....+|.-++ ++...+. .+.+...++.|.. +.++++++.| ++|..+ ..-++|
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 1 244443 554 45556667885444 4554454 4567777788855 6788886654 466653 233444
Q ss_pred ECCCCCeEEEEeccCccc-eeEEcCCCCeeEEEe
Q 021319 261 NVHTGRTVHQIPCRAAMN-SVEWNPKYNLLAYAG 293 (314)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~-~v~~~~~~~~la~~~ 293 (314)
+...+..+..+.+..... .+.|||++++++-..
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 454356666776666666 999999999886544
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.0019 Score=52.22 Aligned_cols=197 Identities=17% Similarity=0.213 Sum_probs=114.7
Q ss_pred EEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDV 137 (314)
Q Consensus 60 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (314)
..+.+-...+..++|+|+.+.+++.....+.|...+. +|+.++...+.+ ..-.+++..++.++++..+++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3556666679999999987778888888888888886 477777776653 4567888888888777777899999887
Q ss_pred cCCe----E--eeeecc------CcceeeEEeccCCCeEEEEcCCceEEEEeCCC---CCceeee--------eecccce
Q 021319 138 RKFK----P--IHRRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTV--------VAHTAGC 194 (314)
Q Consensus 138 ~~~~----~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~--------~~~~~~i 194 (314)
.... . ...+.. ......++|.+..+.++++-+..-..+|.... ...+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 1 122222 23468899999988888887765555555432 1111110 0122346
Q ss_pred EEEEECCC-CCEEEEeeCCCeEEEeeCCCcEEEEEeeecc---------cCeEEEEEccCCcEEEEecCCceEEE
Q 021319 195 YCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------WPVRTISFSHTGDYIASASEDLFIDI 259 (314)
Q Consensus 195 ~~i~~~~~-~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~s~d~~v~v 259 (314)
..++++|. +.+++.......+..+| .+++.+..+.-.. ...-.|+|.|+|.+.++ |+-....+
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 78889885 56777788888999999 5676665543222 13567999999866554 44444433
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.20 E-value=0.0019 Score=55.01 Aligned_cols=208 Identities=18% Similarity=0.169 Sum_probs=120.8
Q ss_pred CcEEEEeCCCCceeeeEEecCce--EE---EEEccC----CCEEEEEeC---------C-CcEEEEEccCC-------eE
Q 021319 89 KTVRLWDARSGKCSQQAELSGEN--IN---ITYKPD----GTHIAVGNR---------D-DELTILDVRKF-------KP 142 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~--~~---~~~~~~----~~~l~~~~~---------d-~~i~i~d~~~~-------~~ 142 (314)
..|++.|..+...+....+.... .+ +.+..+ ..++++|+. . |.+.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36788888877777666654432 22 223322 467777764 2 78999998873 23
Q ss_pred eeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~ 222 (314)
+...+....+.++... +..+++ +.++.+.+|++...+.+.....+...+...++...+.++++|+....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh--CCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 3444556667776644 334443 3458889998876653333323333333333433466999999988888885542
Q ss_pred -cEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEEECCC-------CC-eE---EEEeccCcccee---EEcCC
Q 021319 223 -MLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHT-------GR-TV---HQIPCRAAMNSV---EWNPK 285 (314)
Q Consensus 223 -~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-------~~-~~---~~~~~~~~i~~v---~~~~~ 285 (314)
...+..+.. ....+.++.|-++++.++.+..+|.+.++.... +. .+ -.+..+..|+++ ...|.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~ 238 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR 238 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence 333333332 233478888877778999999999999998752 22 23 234456677777 55552
Q ss_pred --C------CeeEEEecCCccc
Q 021319 286 --Y------NLLAYAGDDKNKY 299 (314)
Q Consensus 286 --~------~~la~~~~d~~~~ 299 (314)
. +.+.+++.+++++
T Consensus 239 ~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 239 SGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp SSSS-TTEEEEEEEEETTS-EE
T ss_pred CCCCcccccceEEEEecCCEEE
Confidence 2 2477888887654
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.2e-05 Score=70.61 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=80.7
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeE-EEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR-TISFSHTGDYIASASEDLFIDISNVHTGRTVH 269 (314)
Q Consensus 191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~ 269 (314)
...+.-+.|+|....+|++..+|.+.+..+. .+++-++.-+.-++. +++|.|||+.||.|=+||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4467889999999999999999999999987 777888876666677 99999999999999999999999999998887
Q ss_pred E--EeccCccceeEEcC
Q 021319 270 Q--IPCRAAMNSVEWNP 284 (314)
Q Consensus 270 ~--~~~~~~i~~v~~~~ 284 (314)
. +.....|.++-|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 7 44466788888864
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0039 Score=54.36 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=144.8
Q ss_pred EEEEECCCCC-EEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCc
Q 021319 24 HSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGK 100 (314)
Q Consensus 24 ~~v~~s~~g~-~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~D~~v~iwd~~~~~ 100 (314)
..+..++++. ..++...+..|.+.|.+... .......+. ....++++|+++.+.++-. .++++.+.|..+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 4567777877 45555567899999865422 111112222 4567888988766666666 47999999998888
Q ss_pred eeeeEEecCceEEEEEccCCCEEEEEe-CCCcEEEEEccCCeEee-e----eccCcceeeEEeccCCCeEEEEcCC---c
Q 021319 101 CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-R----RKFGYEVNEIAWNMTGEMFFLTTGN---G 171 (314)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~---g 171 (314)
.............+++.|+|+.+++.. .++.+.++|........ . .........+.+.+++..+.+.... +
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 777755554568899999999777665 78889999977665542 1 3334456778899999976666554 4
Q ss_pred eEEEEeCCCCCceee-ee-ecccceEEEEECCCCCEEEEeeCC-CeEEEeeCCCcEEEEEeeecc---cCeEEEEEccCC
Q 021319 172 TVEVLTYPSLRPLDT-VV-AHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTG 245 (314)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~-~~~~~i~~i~~~~~~~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~---~~v~~~~~sp~~ 245 (314)
.+...+......... .. ... ....+.++|+|+.+.+.... +.+.+-|..+......+.... ..+..+++.+..
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 888888766544333 11 122 45678999999998877444 789999998877766654332 235556555543
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00026 Score=62.06 Aligned_cols=183 Identities=15% Similarity=0.195 Sum_probs=109.6
Q ss_pred EEEEEccCCCEEEEE---eCC-CcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEc-CCceEEEE--eCCCCCce
Q 021319 112 INITYKPDGTHIAVG---NRD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPSLRPL 184 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~---~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~ 184 (314)
..-.|+|++..++-. ... ..+.++|+...+..........-..-+|+|+|+.+++.. .+|...+| ++...+ +
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 345688888776533 222 358888888776544444444455668999998877664 45655555 444433 2
Q ss_pred eeeeecccceEEEEECCCCCEEE-EeeCCCe--EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC-ce--EE
Q 021319 185 DTVVAHTAGCYCIAIDPMGRYFA-VGSADSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-LF--ID 258 (314)
Q Consensus 185 ~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-~~--v~ 258 (314)
..+..-.+.-..=.|+|||+.++ +.+..|. |.++|+..... +.+......-..-.|||||++++-.+.. |. |.
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~ 353 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID 353 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence 22222222223557999999876 5555665 55555544332 3332222222256799999999877643 43 66
Q ss_pred EEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCC
Q 021319 259 ISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 259 v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+.+..++...+.+........-.|.|++.++.+.+.-.
T Consensus 354 ~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 354 KNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 66776666555555445566778888888887766543
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.0012 Score=57.94 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEE-eCCCc--EEEEEccCCeE
Q 021319 69 VDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE--LTILDVRKFKP 142 (314)
Q Consensus 69 v~~l~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~--i~i~d~~~~~~ 142 (314)
+..-.|+|++..+....-.. ..+.++|+.+++........+....-.|+|||+.|+.. ..|+. |.++|+.....
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 33446777665443332222 35888899988877777766777778899999988754 45665 55667765542
Q ss_pred eeeeccC-cceeeEEeccCCCeEEEEcC-Cc--eEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCC-Ce--E
Q 021319 143 IHRRKFG-YEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL--V 215 (314)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~d-g~--i 215 (314)
.+.... ..-..=.|+|+|+.++..+. .| .+.+++.+.... ..+......-..-.++|+|++++..+.. |. |
T Consensus 275 -~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 275 -PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred -eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceee
Confidence 222211 12225578999998877654 34 444445544433 2232223333366799999998877653 44 5
Q ss_pred EEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCC
Q 021319 216 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
.+.|+.++...+.+. .......-+|.|+++.+...+.-
T Consensus 353 ~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 353 DKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 556554433222221 11122334677888877755543
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0032 Score=50.97 Aligned_cols=182 Identities=16% Similarity=0.211 Sum_probs=102.6
Q ss_pred cCceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--
Q 021319 108 SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-- 182 (314)
Q Consensus 108 ~~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 182 (314)
..+...++|.|+.+.| ++....+.|..++. ..+.+.++... .....+++.-++.++++.-..+.+..+......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3456789999986655 55666677777776 45666665443 457788887666666655568888888773321
Q ss_pred -ce---eeee-----ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCC---cEEEE--Eee------ecccCeEEEEEc
Q 021319 183 -PL---DTVV-----AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVR--TFT------KLEWPVRTISFS 242 (314)
Q Consensus 183 -~~---~~~~-----~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~---~~~~~--~~~------~~~~~v~~~~~s 242 (314)
.. ..+. .++.+...+++++.++.|+.+-...-..+|.+.. ...+. ... .....+++++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 11 1111 2445688999999877776666665566666542 11111 111 123357899999
Q ss_pred cC-CcEEEEecCCceEEEEECCCCCeEEEEeccC----------ccceeEEcCCCCeeEE
Q 021319 243 HT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA----------AMNSVEWNPKYNLLAY 291 (314)
Q Consensus 243 p~-~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~----------~i~~v~~~~~~~~la~ 291 (314)
|. +.+++-..++..+...| .+|+++..+.... ---.|+|.|+|++.++
T Consensus 180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 87 56777777888899998 7888887766432 1348999999977653
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.02 E-value=1.4e-05 Score=43.71 Aligned_cols=36 Identities=39% Similarity=0.571 Sum_probs=32.3
Q ss_pred ceeeecccccEEEEEECCCCCEEEEeeCCCcEEEee
Q 021319 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (314)
Q Consensus 13 ~~~~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~ 48 (314)
...+.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345678999999999999999999999999999995
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.98 E-value=0.0071 Score=50.66 Aligned_cols=243 Identities=14% Similarity=0.171 Sum_probs=131.8
Q ss_pred EEEECCCCCEEEEee----------CCCcEEEeecCCCCCCceeeEEeecC-CCC----EEEEEEcCCCCCEEEEE--eC
Q 021319 25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-ADS----VDQLCWDPKHADLIATA--SG 87 (314)
Q Consensus 25 ~v~~s~~g~~l~s~~----------~D~~v~iw~~~~~~~~~~~~~~~~~h-~~~----v~~l~~~~~~~~~l~s~--~~ 87 (314)
.+..|||++.+.++. ..-.|.+||..+.. ....++++.- ... ...+.++.++ .+++.. +-
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~--~~~EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS--PTGEIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE--EEEEEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc--ccceEecCCcchheecccccceEEccCC-cEEEEEccCC
Confidence 355789999887753 23378899986532 2333445432 111 1123444443 232221 22
Q ss_pred CCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEcc-CCeEeeee-c--c---CcceeeEEeccC
Q 021319 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRR-K--F---GYEVNEIAWNMT 160 (314)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-~--~---~~~~~~~~~~~~ 160 (314)
-.+|.+-|+..++........+.....-..+ .-+.+-+.||++.-..+. ..+...+. + . ......-++...
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred CCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 3566777777777766665554433322222 235566677887777665 33332111 1 0 111122234445
Q ss_pred CCeEEEEcCCceEEEEeCCCCCce--eeeee----------cccceEEEEECCCCCEEEEe---eCCC-------eEEEe
Q 021319 161 GEMFFLTTGNGTVEVLTYPSLRPL--DTVVA----------HTAGCYCIAIDPMGRYFAVG---SADS-------LVSLW 218 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~----------~~~~i~~i~~~~~~~~l~t~---~~dg-------~i~vw 218 (314)
+..+++.+.+|.++-.++...... ..+.. -.++-.-+++++....|.+- +.+| .|-++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 667777888899988887654421 11110 01223456777654433322 1222 48888
Q ss_pred eCCCcEEEEEeeecccCeEEEEEccCCc-EEEEe-cCCceEEEEECCCCCeEEEEec
Q 021319 219 DISEMLCVRTFTKLEWPVRTISFSHTGD-YIASA-SEDLFIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 219 d~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-s~d~~v~v~~~~~~~~~~~~~~ 273 (314)
|+.+.+++.++.. +.++.+|+.+-+.+ +|++. ..++.+.++|..+|+.++.+..
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999988753 34678899998765 66554 4689999999999999998864
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.013 Score=52.90 Aligned_cols=248 Identities=15% Similarity=0.141 Sum_probs=140.8
Q ss_pred CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCC---CCEE-EEEEcCCCCCEEEEEe---------CCCcEEEEeCCCC
Q 021319 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA---DSVD-QLCWDPKHADLIATAS---------GDKTVRLWDARSG 99 (314)
Q Consensus 33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~---~~v~-~l~~~~~~~~~l~s~~---------~D~~v~iwd~~~~ 99 (314)
..++.++.|+.|.-+|.++.. .........+. ..+. ...+. + .+++.++ .++.+.-.|..+|
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence 567777788999988887643 22222222220 0011 11111 1 2444443 3678888999999
Q ss_pred ceeeeEEecCce----------------------EEEEEccCCCEEEEEeCCC------------------cEEEEEccC
Q 021319 100 KCSQQAELSGEN----------------------INITYKPDGTHIAVGNRDD------------------ELTILDVRK 139 (314)
Q Consensus 100 ~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~ 139 (314)
+..-........ ....+.+.+..+++++.++ .+..+|+.+
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 876554432110 0234455567788887665 688999999
Q ss_pred CeEeeeeccCcc-ee--------eEE-e-ccCCC---eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCE
Q 021319 140 FKPIHRRKFGYE-VN--------EIA-W-NMTGE---MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY 205 (314)
Q Consensus 140 ~~~~~~~~~~~~-~~--------~~~-~-~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 205 (314)
.+.+...+.... .. .+. . ..++. .++++..+|.+..++..+.+.+-..... ...++.+| +..
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~v 341 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLV 341 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceE
Confidence 888776543211 00 000 0 01222 5677788999999999888776544311 11233444 222
Q ss_pred EEE-----------------eeCCCeEEEeeCCCcEEEEEeeecc--------cCeEEEEEccCCcEEEEecCCceEEEE
Q 021319 206 FAV-----------------GSADSLVSLWDISEMLCVRTFTKLE--------WPVRTISFSHTGDYIASASEDLFIDIS 260 (314)
Q Consensus 206 l~t-----------------~~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~s~s~d~~v~v~ 260 (314)
++. ...+|.+.-.|+.+++.+-+..... .+...-...-.+.+|+.++.|+.++.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 221 1246788888988887764443220 111000111256788889999999999
Q ss_pred ECCCCCeEEEEeccCccce--eEEcCCCCee
Q 021319 261 NVHTGRTVHQIPCRAAMNS--VEWNPKYNLL 289 (314)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~--v~~~~~~~~l 289 (314)
|..+|+.+........+.+ +.+..++++.
T Consensus 422 d~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 422 DATTGKELWKFRTPSGIQATPMTYEVNGKQY 452 (488)
T ss_pred ECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence 9999999988776554432 2334455443
No 344
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.00023 Score=64.42 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=101.8
Q ss_pred eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCC------------CEEEEeeCCCeEEEee
Q 021319 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG------------RYFAVGSADSLVSLWD 219 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------~~l~t~~~dg~i~vwd 219 (314)
...+.|++.|-. +-+....+.+.|-.+.+.+..+..|...|+.+.|.|.. -.+|+++..|.|.+||
T Consensus 18 ~~A~Dw~~~GLi--AygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSGLI--AYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccceE--EEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 345667777733 33445677888888888888888999999999996632 2578888899999999
Q ss_pred CCCcEEEEEeeecccCeEEEEEccC---C-cEEEEecCCceEEEEECCCCCeEEEEeccCccc-eeEEcC
Q 021319 220 ISEMLCVRTFTKLEWPVRTISFSHT---G-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMN-SVEWNP 284 (314)
Q Consensus 220 ~~~~~~~~~~~~~~~~v~~~~~sp~---~-~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~-~v~~~~ 284 (314)
...+..+..+..+..++..++|-|. . .+|+.-..-..+.+|+..+|.++.+..+...+. ++.+-|
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 9888777778888889999998753 4 466666777889999999999999887655554 477777
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00019 Score=65.57 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=85.2
Q ss_pred EEEccCCCEEEEEe----CCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319 114 ITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (314)
Q Consensus 114 ~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 189 (314)
..|+|...++++++ ..|++.||- .++.|.....-+..+.++.|+|..-.++.+-+.|.+.+|.....+.-.....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 56888888888776 356777773 3444555555556677899999998888898999999998766655445567
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~ 221 (314)
|..+|..+.||++|..|.++..-|.+.+|...
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999999999999999999999999875
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.85 E-value=0.012 Score=49.23 Aligned_cols=197 Identities=21% Similarity=0.268 Sum_probs=109.7
Q ss_pred CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEe----------CCCcEEEEEccCCeEeeeeccCc--------
Q 021319 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN----------RDDELTILDVRKFKPIHRRKFGY-------- 150 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~-------- 150 (314)
+.+.+.|..+++........-.. .+..+|+++.+++.+ +...|.+||..+..+...+..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 47889999888876655443322 356789999988644 24469999999998876554432
Q ss_pred ceeeEEeccCCCeEEEEc--CCceEEEEeCCCCCceeeeeecccceEEEEECCC-CCEEEEeeCCCeEEEeeCC-CcEEE
Q 021319 151 EVNEIAWNMTGEMFFLTT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS-EMLCV 226 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~t~~~dg~i~vwd~~-~~~~~ 226 (314)
.....+.+.+++.+++.. -...|.+.|+...+-+.++.. .+ |..+-|. .+-|.+-|.||.+....+. .++..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 123345556666555542 234555666555443333211 11 2222222 2345566666666666554 22221
Q ss_pred EEee--------------------------ecccCeE---------------------------------EEEEccCCcE
Q 021319 227 RTFT--------------------------KLEWPVR---------------------------------TISFSHTGDY 247 (314)
Q Consensus 227 ~~~~--------------------------~~~~~v~---------------------------------~~~~sp~~~~ 247 (314)
++-. -+...|. -+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 1100 0000111 1455554443
Q ss_pred EEEecC--------C--ceEEEEECCCCCeEEEEeccCccceeEEcCCCC-eeE
Q 021319 248 IASASE--------D--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLA 290 (314)
Q Consensus 248 l~s~s~--------d--~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~la 290 (314)
|..--. | -.|.++|+.+++.+..++....+.+|+.+.+.+ +|.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 333211 2 358888999999999998878899999998765 443
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.004 Score=49.55 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=83.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE
Q 021319 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI 199 (314)
Q Consensus 120 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 199 (314)
..++++|+..+.+...|..+.+.......+.++.+-+.- -+++++.++.+|.+++.+..+......+...+.--.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 356778888888999999988887776666666554443 6788999999999999998887655555432221223346
Q ss_pred CCCCCEEEEeeCCCeEEEeeCCCcEEEEEee
Q 021319 200 DPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (314)
Q Consensus 200 ~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 230 (314)
++++..+..|+.|+.....|.++..++.+.+
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecc
Confidence 7889999999999999999999988886654
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=9.7e-05 Score=65.18 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=75.8
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceE-EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~ 228 (314)
..+.-+.|+|.-+.++...++|.+-+..+. .+.+.++..+..+++ +++|.|||+.+|.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 446678899999999999999999888876 666777776777777 999999999999999999999999999887766
Q ss_pred ee-ecccCeEEEEEcc
Q 021319 229 FT-KLEWPVRTISFSH 243 (314)
Q Consensus 229 ~~-~~~~~v~~~~~sp 243 (314)
+. -.+.+|.++-|+|
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 31 2344677777753
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00057 Score=62.64 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=57.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~ 97 (314)
.+++++|+|..-.|+.|-.-|.+.+|....... ......|..+|..+.|++++ +.++|+..-|.|.+|-..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~----htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET----HTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCcee----eeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 466899999988899999999999998764321 11234699999999999985 688999999999999654
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=0.00012 Score=39.68 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=33.0
Q ss_pred EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319 224 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 224 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
.++..+..+...+.+++|+|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667778899999999999999999999999995
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.78 E-value=0.016 Score=48.11 Aligned_cols=225 Identities=15% Similarity=0.190 Sum_probs=120.8
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE----
Q 021319 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---- 105 (314)
Q Consensus 30 ~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~---- 105 (314)
..++.|+.|..+| |.+++... ..... .. .+...|..+...|.-+ .++.- .|+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~-~~~~~---~i-~~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD-PSKPT---RI-LKLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC-Cccce---eE-eecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence 4578899998888 88888721 11111 11 1233499999888654 44333 4599999998654322210
Q ss_pred ---------Ee--cCceEEEE--EccCCCEEEEEeCCCcEEEEEccCC-----eEeeeeccCcceeeEEeccCCCeEEEE
Q 021319 106 ---------EL--SGENINIT--YKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 106 ---------~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
.. .......+ -.+.+...++......+.+|..... +.......+..+..+.|. ++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 11 11111222 1223333444444558888877542 445556666777888887 5666666
Q ss_pred cCCceEEEEeCCCCCceeeeee------------cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEE--Eeeecc
Q 021319 168 TGNGTVEVLTYPSLRPLDTVVA------------HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFTKLE 233 (314)
Q Consensus 168 ~~~g~~~~~~~~~~~~~~~~~~------------~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~ 233 (314)
..++ ..++++.+......+.. ...++..+.++ ++.+|++- |..-.+.|. .+...+ .+. ..
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~ 228 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WS 228 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-cC
Confidence 6444 55666654433222110 11123333333 34454432 333333333 332222 221 12
Q ss_pred cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec
Q 021319 234 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 273 (314)
Q Consensus 234 ~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~ 273 (314)
..+.++++ ...||+..+.++ |.|+++.+++.++.+..
T Consensus 229 ~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 229 SAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPL 265 (275)
T ss_pred CchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence 23445555 446888777765 99999999999888764
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00049 Score=61.67 Aligned_cols=179 Identities=11% Similarity=0.054 Sum_probs=112.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEccCCeEeeeec--cCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceee--e---
Q 021319 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT--V--- 187 (314)
Q Consensus 115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~--- 187 (314)
++...+++++.|+..|.+.+|+-...+...... ....+..+..++...++++++..|.|.++.+....+-.. +
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 355678899999999999999865443332222 122344555677888888999999999997755333211 1
Q ss_pred -eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc----EEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 188 -VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 188 -~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
..|...|+|++|++++..+++|...|+|.+-.+... ...+.+...+.+|-.++. -++..|++... ...+.++
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~--r~~Lc~t 196 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY-LQSYLLVSTLT--RCILCQT 196 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec-ccceehHhhhh--hhheeec
Confidence 136778999999999999999999999999888761 123444455666666665 23344433322 3455666
Q ss_pred CCCCeEEEEec---cCc-cceeEEcCC----CCeeEEEecCCc
Q 021319 263 HTGRTVHQIPC---RAA-MNSVEWNPK----YNLLAYAGDDKN 297 (314)
Q Consensus 263 ~~~~~~~~~~~---~~~-i~~v~~~~~----~~~la~~~~d~~ 297 (314)
..++ ++++.. ++. -....|=|. ...++++++=+.
T Consensus 197 E~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~ 238 (726)
T KOG3621|consen 197 EAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGL 238 (726)
T ss_pred chhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCC
Confidence 5433 333322 221 334555554 455667777654
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00051 Score=61.53 Aligned_cols=102 Identities=16% Similarity=0.299 Sum_probs=78.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeEE--ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee-------eeccC
Q 021319 79 ADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-------RRKFG 149 (314)
Q Consensus 79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~ 149 (314)
.++++-|+.-|.+.+++...+......+ ..+....+..+++..++|.|+..+.|.++.+....+.. ...++
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 4688999999999999987776544333 23334457788889999999999999999876543211 12246
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCC
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (314)
..+.++.|++++..++.|...|.+....+..
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEech
Confidence 7899999999999999999999999887765
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.023 Score=45.37 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=79.0
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCccee-e
Q 021319 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-E 154 (314)
Q Consensus 76 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~ 154 (314)
++...+++.||-.+.+.--|..+|...-+..+...+.+-++. -|.++++|...+.+.+.+.++...........++. .
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 344567778888888888888888776555444444332222 47789999999999999999886655544333332 2
Q ss_pred EEeccCCCeEEEEcCCceEEEEeCCCCCceeeee
Q 021319 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188 (314)
Q Consensus 155 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 188 (314)
....+++..+..++.|++.+..|.+....+....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 3346788899999999999999988776665543
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.60 E-value=0.0026 Score=59.45 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=96.3
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCCceeeeEEecCceEEEEEccC-------CCEEEEEeCCCcEEEEEccCCe--Eee---
Q 021319 78 HADLIAT-ASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFK--PIH--- 144 (314)
Q Consensus 78 ~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~--~~~--- 144 (314)
+.++|+. ......|.-.|+..|+++.....+...--..+.|+ ....++|-.+..+..||+|... .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3445443 34568888999999999988877655423344443 3456788889999999998643 221
Q ss_pred -eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319 145 -RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (314)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~ 220 (314)
.+.......+++-. ..-++++|+.+|.|++|+-...+....+.+-+.+|..|+++.||++++..+ +..+.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12222333444433 344788899999999999655444455667788999999999999977544 556777775
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.049 Score=47.98 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=100.2
Q ss_pred cEEEEeCCCCceeeeEEec-CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC---cceeeE-----EeccC
Q 021319 90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEI-----AWNMT 160 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~-----~~~~~ 160 (314)
.|+||+.. |+.+...... +.++.+.|+.+ ..|++-..||.+.++|+.... ....... ..+... .+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 47777764 4444433332 56788999875 455566789999999986333 1111000 111111 11122
Q ss_pred CCeEEEEcCCceEEEEeCCCCC-c---eeeeee-----cccc-eEE-EEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319 161 GEMFFLTTGNGTVEVLTYPSLR-P---LDTVVA-----HTAG-CYC-IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~~-----~~~~-i~~-i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 229 (314)
| +++-..++.+....--... . +..... +... ... ..++.+....+....++.+.+.+-..... +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3 3444455555544321110 0 111111 1000 011 23444555555555555566444332211 1
Q ss_pred eecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEecc--CccceeEEcCCCCe
Q 021319 230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNL 288 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~--~~i~~v~~~~~~~~ 288 (314)
. ...++..++.||+++++|.-..+|.+.+.+..-.+.+.++... .....+.|.-+...
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 1 2357999999999999999999999999887666666555433 45556666654433
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0036 Score=58.58 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=91.3
Q ss_pred CCEEEEE-eCCCcEEEEEccCCeEeeeeccCcceeeEEeccC-------CCeEEEEcCCceEEEEeCCCCC-ceeeeee-
Q 021319 120 GTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT-------GEMFFLTTGNGTVEVLTYPSLR-PLDTVVA- 189 (314)
Q Consensus 120 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~- 189 (314)
.+.|+.. .....+.-+|+..++.+...+....+....+.|+ ....++|..+..+..||.+-.. ++..-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 2456788889999888877665543323333332 4567888888888888875432 2211112
Q ss_pred ---cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE
Q 021319 190 ---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 261 (314)
Q Consensus 190 ---~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~ 261 (314)
......|++-+.+| ++|+|+.+|.||+||-........+++...||..|+.+.||++|+...... +.+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty-LlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY-LLLID 645 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce-EEEEE
Confidence 23346788877766 789999999999999533222334567788999999999999988555444 44444
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.07 Score=47.05 Aligned_cols=187 Identities=13% Similarity=0.194 Sum_probs=93.4
Q ss_pred cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC-----ceEEE---
Q 021319 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----ENINI--- 114 (314)
Q Consensus 43 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-----~~~~~--- 114 (314)
.|+||+..- ..+..+.... +.+..+.|..+ +.|+.-..||.++++|+. |.. ++.+.. .+...
T Consensus 62 ~I~iys~sG---~ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCC---CEeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccc
Confidence 477776542 2334444543 78999999864 456677899999999986 333 211111 11111
Q ss_pred --EEccCCCEEEEEeCCCcEEEEE-ccCCeEeeee-ccCccee---------e-EEeccCCCeEEEEcCCceEEEEeCCC
Q 021319 115 --TYKPDGTHIAVGNRDDELTILD-VRKFKPIHRR-KFGYEVN---------E-IAWNMTGEMFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 115 --~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~-~~~~~~~---------~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (314)
.+...| +++-..++.+.+.. .......... +...... . ..+..+....+....++.+...+...
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 122233 22223344443332 2211000000 1000000 0 12233334444444445555444322
Q ss_pred CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec-ccCeEEEEEccCC
Q 021319 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTG 245 (314)
Q Consensus 181 ~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~sp~~ 245 (314)
.+. + ...+++..|++||+++++|.-..+|.+.+...+-.+.+.++... ......+.|.-++
T Consensus 210 ~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 210 FKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 211 1 12357899999999999999999999988875433333333222 2345566664443
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.06 Score=45.83 Aligned_cols=168 Identities=14% Similarity=0.130 Sum_probs=97.9
Q ss_pred CcEEEEeCCCC-----ce--eeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCe-EeeeeccCcceeeEEeccC
Q 021319 89 KTVRLWDARSG-----KC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT 160 (314)
Q Consensus 89 ~~v~iwd~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (314)
|.|.++++... +. +......+.+.+++-. ++. |+++ .+..+.++++...+ .........+.........
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999998874 22 2334556666666544 444 4444 34789999998777 4444333333333344445
Q ss_pred CCeEEEEcCCceEEEEeCCC-CCceeeeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCC-------c----EEE
Q 021319 161 GEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-------M----LCV 226 (314)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~-------~----~~~ 226 (314)
++.++++.....+.++.+.. .+.+..+.. ....++++.+-++++.++.++.+|.+.++.... + ...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~ 218 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI 218 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeE
Confidence 77899998888888876543 222333322 234578888876667999999999999998752 1 122
Q ss_pred EEeeecccCeEEE---EEccC--C------cEEEEecCCceEEEE
Q 021319 227 RTFTKLEWPVRTI---SFSHT--G------DYIASASEDLFIDIS 260 (314)
Q Consensus 227 ~~~~~~~~~v~~~---~~sp~--~------~~l~s~s~d~~v~v~ 260 (314)
..+ .....|.++ ++.|. + ..++.++.+|.|.+.
T Consensus 219 ~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 219 SSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 222 233456666 55562 2 247778888888743
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.018 Score=39.81 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=66.3
Q ss_pred EEEEEEc---CCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeee
Q 021319 69 VDQLCWD---PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (314)
Q Consensus 69 v~~l~~~---~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 145 (314)
|.+|++. .++.+.|+.|+.|..||+|+- ...+........+..++.... ..++-+..+|+|-+|+-. +.+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 4455543 334467889999999999974 466666666777777765555 668889999999999853 34455
Q ss_pred eccCcceeeEEe-ccCC---CeEEEEcCCceEE
Q 021319 146 RKFGYEVNEIAW-NMTG---EMFFLTTGNGTVE 174 (314)
Q Consensus 146 ~~~~~~~~~~~~-~~~~---~~~~~~~~~g~~~ 174 (314)
.+....+.++.+ ..++ ..++++-.+|.+.
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555555555443 2222 2556666666653
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.40 E-value=0.084 Score=46.73 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=121.6
Q ss_pred cEEEEEECCCCCEEEEe-eCCC----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC--------
Q 021319 22 KVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------- 88 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~-~~D~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-------- 88 (314)
.+....+||+|+++|-+ +..| .+++.|++++ ....-.+..... ..+.|.+++..++.+.-.+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCC
Confidence 45577899999987754 3334 5999999764 222222222111 2389998765555554333
Q ss_pred --CcEEEEeCCCCcee--eeEEe--cCc-eEEEEEccCCCEEEEEeCC----CcEEEEEccCC-----eEeeeeccCcce
Q 021319 89 --KTVRLWDARSGKCS--QQAEL--SGE-NINITYKPDGTHIAVGNRD----DELTILDVRKF-----KPIHRRKFGYEV 152 (314)
Q Consensus 89 --~~v~iwd~~~~~~~--~~~~~--~~~-~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-----~~~~~~~~~~~~ 152 (314)
..|..|.+.+.... ..+.. ... .+.+..++|++++++.... ..+.+.|+... .+..-......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 23677787665432 12222 222 4578889999998865432 34677787653 222111111112
Q ss_pred eeEEeccCCCeEEEEcC---CceEEEEeCCCCCc---eeeeeecccceEEEEECCCCCEEEEe-eCCC--eEEEeeCCCc
Q 021319 153 NEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAVG-SADS--LVSLWDISEM 223 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~t~-~~dg--~i~vwd~~~~ 223 (314)
....-+..+.+++.... .+.+...++..... ...+..+...+.-..+...+.+|+.. -.++ .|+++++..+
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 22222234444544432 35666666655442 12344455533333333345555444 4444 6899998834
Q ss_pred EEEEEeeec-ccCeEEEEEccCCcEE-EEecC---CceEEEEECCCCCeE
Q 021319 224 LCVRTFTKL-EWPVRTISFSHTGDYI-ASASE---DLFIDISNVHTGRTV 268 (314)
Q Consensus 224 ~~~~~~~~~-~~~v~~~~~sp~~~~l-~s~s~---d~~v~v~~~~~~~~~ 268 (314)
.....+... ...|..+...++++.+ ++-+. =..+..+|+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 444333332 2335556555655433 33322 267788888877643
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.31 E-value=5.5e-05 Score=66.84 Aligned_cols=184 Identities=19% Similarity=0.259 Sum_probs=117.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEe-ee--eccCcceeeEEeccCCC-eEEEEc----CCceEEEEeCCCC--Cceee--
Q 021319 119 DGTHIAVGNRDDELTILDVRKFKPI-HR--RKFGYEVNEIAWNMTGE-MFFLTT----GNGTVEVLTYPSL--RPLDT-- 186 (314)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~----~~g~~~~~~~~~~--~~~~~-- 186 (314)
+...+++|..+|.|.+-.++...-- +. -......++++|++-+. .++++. .+..+.+|+.... .|...
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 3457788888899888877654322 11 11224567888887653 444443 3567889998655 33222
Q ss_pred eee-cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEcc-CCcEEEEecCCceEEEEEC-
Q 021319 187 VVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNV- 262 (314)
Q Consensus 187 ~~~-~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~- 262 (314)
+.+ ......+++|..+.+.+.+|.....++++|++.... ...+ -...+..+..+| ...|+++-+ |+.|.+||.
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~ 225 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY 225 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccch
Confidence 111 334456888888888899999999999999974321 1111 112356677788 778888766 999999994
Q ss_pred CCCC-eEEEEec-cC----ccceeEEcCCC-CeeEEEecCCcccccccceEEecccc
Q 021319 263 HTGR-TVHQIPC-RA----AMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 263 ~~~~-~~~~~~~-~~----~i~~v~~~~~~-~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
.+-+ ++..+.+ .. .+..++|.|.. .++|+...| .++++.|++.
T Consensus 226 rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~ 275 (783)
T KOG1008|consen 226 RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC 275 (783)
T ss_pred hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence 3322 2222222 22 38899999964 456776666 4799999874
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.012 Score=51.65 Aligned_cols=138 Identities=12% Similarity=0.157 Sum_probs=94.4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCC-------EEEEEeCCCcEEEEEccCCeE--e-----eee
Q 021319 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKP--I-----HRR 146 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~--~-----~~~ 146 (314)
++.++.....++--|+..|+++....++..+.-..+.|+.+ .-++|-.+..+.-||+|-... + +.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45566667778888999999988888777655555666543 346777889999999984221 1 111
Q ss_pred ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319 147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~ 220 (314)
..+..-.|.+ ....-++++++.+|.|++|+--..+.-..+++.+.+|..+..+.+|++++.. .+..+.+.++
T Consensus 428 ~~k~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccccceee-ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 1111222222 2234578889999999999985555555677888999999999999987644 3666777765
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.29 E-value=0.093 Score=44.99 Aligned_cols=262 Identities=12% Similarity=0.093 Sum_probs=113.9
Q ss_pred EECCCCCE-EEEeeCCCcEEEeecCCCCCCceeeEEeecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 021319 27 AWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104 (314)
Q Consensus 27 ~~s~~g~~-l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~ 104 (314)
+|.+||+. |.++..||.-.+|-++... ..+. .|.... .......++|... .++-.....+|+--|+.+.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-~~i~--QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-GEIT--QLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEE--E---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc-CEEE--ECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence 67889965 5555567777776554432 2222 233222 2222445567654 443344556888889988875555
Q ss_pred EEecCceEE-EE--EccCCCEEEEEeCCC----------------------cEEEEEccCCeEeeeeccCcceeeEEecc
Q 021319 105 AELSGENIN-IT--YKPDGTHIAVGNRDD----------------------ELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (314)
Q Consensus 105 ~~~~~~~~~-~~--~~~~~~~l~~~~~d~----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 159 (314)
......-.. .. .+.++..++-..... .|...|+++.+.........-+..+.++|
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 544443331 23 345566554322111 22333444433322222333456677888
Q ss_pred CCCeEEEEcCC-------ceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEE-----eeCCCeEEEeeCCCcEE
Q 021319 160 TGEMFFLTTGN-------GTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAV-----GSADSLVSLWDISEMLC 225 (314)
Q Consensus 160 ~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t-----~~~dg~i~vwd~~~~~~ 225 (314)
....++.-+-. .++...+..... ...+..+ ...+..=-|.|||..+.- ++.+..|.-+|+.++..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 77665554322 234444433221 1111111 112233348899876542 22244677788887755
Q ss_pred EEEeeecccCeEEEEEccCCcEEEEecCCc----------------eEEEEECCCCCeEEEEeccC-----------ccc
Q 021319 226 VRTFTKLEWPVRTISFSHTGDYIASASEDL----------------FIDISNVHTGRTVHQIPCRA-----------AMN 278 (314)
Q Consensus 226 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~----------------~v~v~~~~~~~~~~~~~~~~-----------~i~ 278 (314)
.... ..+ +....--++||++++-=+.|. .+.++++.+++...-..|.. .=-
T Consensus 277 ~~~~-~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 277 RRLM-EMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-EE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred eEEE-eCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 3322 222 344566679999887444432 56677887765432222211 113
Q ss_pred eeEEcCCCCeeEEEecC
Q 021319 279 SVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 279 ~v~~~~~~~~la~~~~d 295 (314)
-+.|+||++.+++.|+-
T Consensus 355 hp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp --EE-TTSSEEEEEE-T
T ss_pred CCccCCCCCEEEEECCC
Confidence 68999999999988864
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.069 Score=43.33 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=116.9
Q ss_pred eeeEEecCceE--EEEEccCCCEEEEEeCCC--cEEEEEccCCeEeeeeccCcce--eeEEeccCCCeEEEEcCCceEEE
Q 021319 102 SQQAELSGENI--NITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 102 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
+...++..... .+.|..++.++.+.+.-| .++.+|+.+.+.......+... ..++.. .+..+...=.++...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 34444443333 366767888888877766 5888999998877665554332 222222 3445556667888899
Q ss_pred EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc--c---CeEEEEEccCCcEEEE
Q 021319 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE--W---PVRTISFSHTGDYIAS 250 (314)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~sp~~~~l~s 250 (314)
|+..+.+.+.++. ..++-+.++ .+++.|+..+....+.++|..+.+..+++.... . .++.+.|- +|...|-
T Consensus 115 yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 9998887776664 234556666 457777777777889999998877766654332 1 35566664 6887777
Q ss_pred ecCCceEEEEECCCCCeEEEEec----------------cCccceeEEcCCCCeeEEEe
Q 021319 251 ASEDLFIDISNVHTGRTVHQIPC----------------RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~~----------------~~~i~~v~~~~~~~~la~~~ 293 (314)
.=....|...|..+|+....+.. ..-.|.+||.|....|...|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77777899999999999887642 12368999998765544444
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.00073 Score=52.54 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCceEEEEeCCCCCcee-eeeecccceE-EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc-cCe
Q 021319 160 TGEMFFLTTGNGTVEVLTYPSLRPLD-TVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPV 236 (314)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~-~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v 236 (314)
...-+++++.+|.+.+|.+...-... .+..-...+- -+..-.++.+..+++.||.|+.|++...+.+-....|. .+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 34667889999999999875322111 1111112222 22333345588899999999999998887766555555 445
Q ss_pred EEEEEccCCcEEEEe--cCCceEEEEECCC
Q 021319 237 RTISFSHTGDYIASA--SEDLFIDISNVHT 264 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~--s~d~~v~v~~~~~ 264 (314)
.....+..+++++.+ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 555555556666666 6666666666643
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.20 E-value=0.17 Score=46.18 Aligned_cols=238 Identities=15% Similarity=0.107 Sum_probs=129.9
Q ss_pred CEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CEEE-EEEcCCCCCEEEEEe------CCCcEEEEeCCCCceee
Q 021319 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATAS------GDKTVRLWDARSGKCSQ 103 (314)
Q Consensus 33 ~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~~-l~~~~~~~~~l~s~~------~D~~v~iwd~~~~~~~~ 103 (314)
..++.++.|+.|.-.|.+++. .+....+..+.. .+.+ -.. .++ .++.+. .++.|.-+|..+|+.+-
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk--~~W~~~~~~~~~~~~~tssP~v--~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGK--VVWSKKNGDYKAGYTITAAPLV--VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCC--EEeecccccccccccccCCcEE--ECC-EEEEeecccccCCCcEEEEEECCCCceeE
Confidence 456667778888877776543 222222211111 1111 011 122 344443 26889999999987654
Q ss_pred eEEecCc--------------------------------e-EEEEEccCCCEEEEEeCC-----C-----------cEEE
Q 021319 104 QAELSGE--------------------------------N-INITYKPDGTHIAVGNRD-----D-----------ELTI 134 (314)
Q Consensus 104 ~~~~~~~--------------------------------~-~~~~~~~~~~~l~~~~~d-----~-----------~i~i 134 (314)
....-.. . ..+++.|+..++..+... + +|.-
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 3221100 0 124677777777777632 2 5777
Q ss_pred EEccCCeEeeeeccC----------cceeeEEeccCCC---eEEEEcCCceEEEEeCCCCCceee--------e----ee
Q 021319 135 LDVRKFKPIHRRKFG----------YEVNEIAWNMTGE---MFFLTTGNGTVEVLTYPSLRPLDT--------V----VA 189 (314)
Q Consensus 135 ~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--------~----~~ 189 (314)
.|+++.+.+..++.. .+..-+....++. .++.+..+|.+.++|..+.+++.. . ..
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~ 355 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDL 355 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCC
Confidence 888888776655431 1111122223554 667788889999998776655311 0 00
Q ss_pred cc---------------------------cc--eEEEEECCCCCEEEEeeCC----------------------------
Q 021319 190 HT---------------------------AG--CYCIAIDPMGRYFAVGSAD---------------------------- 212 (314)
Q Consensus 190 ~~---------------------------~~--i~~i~~~~~~~~l~t~~~d---------------------------- 212 (314)
.. +. -..++++|+..++.....+
T Consensus 356 ~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 356 KTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCC
Confidence 00 00 0125677766655544333
Q ss_pred -----CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCc
Q 021319 213 -----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 276 (314)
Q Consensus 213 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~ 276 (314)
|.+.-+|+.+++.+-+.+...-..... ..-.+.+++.++.||.++.+|..+|+.+.++.....
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 356677777776654433211111111 112455777788999999999999999998765443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.022 Score=49.95 Aligned_cols=143 Identities=18% Similarity=0.252 Sum_probs=94.9
Q ss_pred EccCCCEEE-EEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC-------eEEEEcCCceEEEEeCCCCC--cee
Q 021319 116 YKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-------MFFLTTGNGTVEVLTYPSLR--PLD 185 (314)
Q Consensus 116 ~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~--~~~ 185 (314)
+..+.++|+ .+.....+.-.|++.++.+...+....+..+.+.|+.+ ..++|..+..+.-|+.+-.. .+.
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 334445544 45555678888999988888777766677777776643 45677788888888764211 222
Q ss_pred eeeecc----cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE-EEeeecccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319 186 TVVAHT----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 260 (314)
Q Consensus 186 ~~~~~~----~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~ 260 (314)
..++|. ..-.|.+-..+| ++|+|+.+|-||+||- .+... ..+++...+|..|.-+.+|++++...... +.+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi 497 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLI 497 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEE
Confidence 223332 234566655555 7899999999999997 44433 35677888999999999999987544443 4343
Q ss_pred E
Q 021319 261 N 261 (314)
Q Consensus 261 ~ 261 (314)
+
T Consensus 498 ~ 498 (644)
T KOG2395|consen 498 D 498 (644)
T ss_pred E
Confidence 3
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.16 E-value=0.0075 Score=55.38 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=75.8
Q ss_pred CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEee------CCC--eEEEeeCCCcEEEEEeeecccCeEEEEE
Q 021319 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS------ADS--LVSLWDISEMLCVRTFTKLEWPVRTISF 241 (314)
Q Consensus 170 ~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 241 (314)
+|.+....-....++....+....+...+++|+|+.+|..- .|. .+.+++..... +.+.... ....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g~-~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEGH-SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecCC-CCCCceE
Confidence 66666555443334433333334577889999999876544 243 45555543222 2221112 3566789
Q ss_pred ccCCcEEEEecCC-ceEEEE-----------ECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccc-----cccc
Q 021319 242 SHTGDYIASASED-LFIDIS-----------NVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ-----ADEG 304 (314)
Q Consensus 242 sp~~~~l~s~s~d-~~v~v~-----------~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~-----~~~~ 304 (314)
+|+|+.|++.+.. ..+++. ++..+.... ...+.|.+++|||||..+|.... +..|. .++|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G 481 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDG 481 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCC
Confidence 9999988877533 223333 333332222 22457999999999999887763 34443 2455
Q ss_pred eEEe
Q 021319 305 VFRI 308 (314)
Q Consensus 305 ~~~~ 308 (314)
+.++
T Consensus 482 ~~~l 485 (591)
T PRK13616 482 QYAL 485 (591)
T ss_pred ceee
Confidence 5544
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.045 Score=37.93 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=63.5
Q ss_pred ECCCC-CEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCcc
Q 021319 199 IDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 277 (314)
Q Consensus 199 ~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i 277 (314)
|+.+| +.|++|+.|..||+|+-. ..+.++... ..|.+++-.+. ..++.|.++|+|-+|+- ...+..++.+..+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~ 83 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQV 83 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCe
Confidence 44444 468999999999999854 445555433 35676765554 67999999999999975 3456666666677
Q ss_pred ceeEEcCCC----CeeEEEecCC
Q 021319 278 NSVEWNPKY----NLLAYAGDDK 296 (314)
Q Consensus 278 ~~v~~~~~~----~~la~~~~d~ 296 (314)
+++++..-. +-|++|-.++
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnG 106 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNG 106 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCC
Confidence 877776422 3567776664
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.0016 Score=50.74 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeec-cCcceeeEEec
Q 021319 81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWN 158 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~ 158 (314)
++..-+.|+.|+-++++..+.....+ +.... .....-+..+++|+.++.+.+|............ .......+.+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34456778888888876544222111 11111 2222345679999999999999876433222211 11122222222
Q ss_pred --cCCCeEEEEcCCceEEEEeCCCCCceeeeeecc-cceEEEEECCCCCEEEEe--eCCCeEEEeeCCCc
Q 021319 159 --MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVG--SADSLVSLWDISEM 223 (314)
Q Consensus 159 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~t~--~~dg~i~vwd~~~~ 223 (314)
..+.+..++..+|.++.+.....+.+.....|+ .+......+..++.++.+ +.|..++.|++...
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 233477788999999999998877766666666 455566666667777777 77888888887654
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.16 Score=42.77 Aligned_cols=214 Identities=11% Similarity=0.016 Sum_probs=116.4
Q ss_pred EECCCCCEEEEe-eCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 021319 27 AWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (314)
Q Consensus 27 ~~s~~g~~l~s~-~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~ 105 (314)
.|.++...|+=+ -..+.|.-|+.+.. ...... +...+.++..-..+ ..|+++. ..+.+++..++......
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~---~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP---SPGGFSSGALIDAG-GRLIACE--HGVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE---CCCCcccceeecCC-CeEEEEc--cccEEEeccCCceeEEe
Confidence 466777654444 35677777776532 122222 23333443333233 3444443 35566776555542222
Q ss_pred -Eec-C----ceEEEEEccCCCEEEEEeC-----------CCcEEEEEccCCeEeeeecc-CcceeeEEeccCCCeEEEE
Q 021319 106 -ELS-G----ENINITYKPDGTHIAVGNR-----------DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 106 -~~~-~----~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 167 (314)
... . ........|+|.+.+.... -+.+..+|. ....+..... -...+.++|+|+++.++++
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 111 1 1123556778776665433 112333343 2222222211 2346789999999877776
Q ss_pred cC-CceEEEEeCCC--CC---c--eeeeeecccceEEEEECCCCCEEEEeeCCC-eEEEeeCCCcEEEEEeeecccCeEE
Q 021319 168 TG-NGTVEVLTYPS--LR---P--LDTVVAHTAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLEWPVRT 238 (314)
Q Consensus 168 ~~-~g~~~~~~~~~--~~---~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~ 238 (314)
.. .+.+..+++.. .. . ......+.+..-.++++.+|.+.+++-.+| .|..|+.. ++.+..+.-....+.+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 54 58888887752 11 1 111112345566788888998876554444 89999987 8878777666566788
Q ss_pred EEEc-cCCcEEEEe
Q 021319 239 ISFS-HTGDYIASA 251 (314)
Q Consensus 239 ~~~s-p~~~~l~s~ 251 (314)
++|- |+.+.|...
T Consensus 260 ~~FgG~~~~~L~iT 273 (307)
T COG3386 260 PAFGGPDLNTLYIT 273 (307)
T ss_pred ceEeCCCcCEEEEE
Confidence 8885 554544433
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.95 E-value=0.078 Score=46.34 Aligned_cols=227 Identities=8% Similarity=0.077 Sum_probs=103.5
Q ss_pred cccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-Eeec------CCCCEEEEEEc---CCC-C---CEEE
Q 021319 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRG------HADSVDQLCWD---PKH-A---DLIA 83 (314)
Q Consensus 18 gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~------h~~~v~~l~~~---~~~-~---~~l~ 83 (314)
..+++|++++.| |=-+++.|..+|.+.|.|+.. ..+... .+.. ....|.++.|. ..+ + -+++
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCC---CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 347899999997 444888888999999999842 222221 2222 23356677664 111 1 2566
Q ss_pred EEeCCCcEEEEeCCC-CceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCC
Q 021319 84 TASGDKTVRLWDARS-GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (314)
Q Consensus 84 s~~~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
.|...|.+.+|.+.- ..-.....+ .......+++.+ .|..+|..+..+...... ....+.-....+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~----~~~~~~~~~~i~-------~I~~i~~~~G~~a~At~~--~~~~l~~g~~i~ 226 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQF----AGATTNHDSPIL-------SIIPINADTGESALATIS--AMQGLSKGISIP 226 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEE----EEEE--SS-----------EEEEEETTT--B-B-BHH--HHHGGGGT----
T ss_pred EEeCCCCEEEEEEecCCCCceEEEE----eeccccCCCceE-------EEEEEECCCCCcccCchh--HhhccccCCCcC
Confidence 777778888876531 110000000 000011111111 122223222221110000 000000001123
Q ss_pred eEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEE-----CCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecc----
Q 021319 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-----DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE---- 233 (314)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---- 233 (314)
.+++......++++.....+..............+.+ ...+..|++-..+|.|++|.+...+.+..+.-..
T Consensus 227 g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 227 GYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred cEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 4566677888999988776654433322122223333 2356678888999999999999888776665422
Q ss_pred cCeEEEEEccCCcEEEEecCCc--eEEEEE
Q 021319 234 WPVRTISFSHTGDYIASASEDL--FIDISN 261 (314)
Q Consensus 234 ~~v~~~~~sp~~~~l~s~s~d~--~v~v~~ 261 (314)
..+...+++++|+.++-.|... .+.+|.
T Consensus 307 ~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred ccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 1244567899999887666553 344443
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.93 E-value=0.0081 Score=51.88 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=62.6
Q ss_pred CCCCCEEEEe---------eCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319 200 DPMGRYFAVG---------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 270 (314)
Q Consensus 200 ~~~~~~l~t~---------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~ 270 (314)
|||+++++.. +..+.+.+||+.+++....... ...+....|||+|+.+|-.. ++.|.+.+..++.. ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EE
Confidence 4666665552 2345689999998765443322 55688899999999999775 46799998877733 33
Q ss_pred EeccC-------------------ccceeEEcCCCCeeEEEecCCc
Q 021319 271 IPCRA-------------------AMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 271 ~~~~~-------------------~i~~v~~~~~~~~la~~~~d~~ 297 (314)
+...+ .-.++-|||++..||+.--|..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 32211 2358899999999999886643
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.87 E-value=0.22 Score=41.77 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=61.4
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCCCeEE
Q 021319 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTVH 269 (314)
Q Consensus 191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~~~~~ 269 (314)
.+.+..+.-+++|++++++.......-||.-...-...-......+.++.|+|++...+.+ ..|.++.-+ ...++...
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 4567888889999999999877788899865322222222345689999999998877755 888898888 22323222
Q ss_pred E--Eec---cCccceeEEcCCCCeeEEEecCC
Q 021319 270 Q--IPC---RAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 270 ~--~~~---~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
+ .+. .-.+..++|.|+....|.|+...
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 2 111 22478999999888888777543
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.82 E-value=0.0045 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.0
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE
Q 021319 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (314)
Q Consensus 191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~ 224 (314)
...|.+++|+|...++|.+..+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 345889999999999999999999999998 443
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.77 E-value=0.22 Score=40.46 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=114.4
Q ss_pred EEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCceeeeEEecCceEE--EEEccCCCEEEEEeCCCcEEEEEccCCeEee
Q 021319 69 VDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (314)
Q Consensus 69 v~~l~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 144 (314)
...+.+..+ +.++-|.+.-| .|+.+|+.+++......+...... ++.. +++.....=.++...+||..+.+++.
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 456777444 35666776654 889999999998877776655442 4433 34555566678889999999999888
Q ss_pred eeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeec--cc---ceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 145 RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--TA---GCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~---~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
+.....+-..+. .++..++.+.+..+++.++-.+.+....+... .. .++.+-+- +|...|--=....|...|
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 776655555555 67888999999999999998777666555432 11 24555554 566666655666788888
Q ss_pred CCCcEEEEEeee---------------cccCeEEEEEccCCcE-EEEe
Q 021319 220 ISEMLCVRTFTK---------------LEWPVRTISFSHTGDY-IASA 251 (314)
Q Consensus 220 ~~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~-l~s~ 251 (314)
..+++.+..+.- ...-.+.||+.|..+. ++||
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888887765421 0234678999987654 4454
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.75 E-value=0.0051 Score=35.52 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=29.9
Q ss_pred cccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319 232 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~ 267 (314)
...+|..++|+|..++||.|+.||.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456899999999999999999999999988 4443
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.72 E-value=0.46 Score=43.46 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=100.7
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC--CE-------EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~--~v-------~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
+..+..++.++.|.-.|.++... +.......... .+ ..+++. +..++.++.|+.+.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce--eeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEE
Confidence 44666677778888777765432 22211111100 00 112222 235667888999999999999876
Q ss_pred eeEEecCce--EEEEEcc--CCCEEEEEeC------CCcEEEEEccCCeEeeeeccCcc---------------------
Q 021319 103 QQAELSGEN--INITYKP--DGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYE--------------------- 151 (314)
Q Consensus 103 ~~~~~~~~~--~~~~~~~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~--------------------- 151 (314)
-........ ..+.-.| .+..++++.. ++.+..+|.++.+.+.+.....+
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 544332111 1111111 1234555432 67899999988877654322110
Q ss_pred -----------e-eeEEeccCCCeEEEEcCC-----c-----------eEEEEeCCCCCceeeeee--cc-------cce
Q 021319 152 -----------V-NEIAWNMTGEMFFLTTGN-----G-----------TVEVLTYPSLRPLDTVVA--HT-------AGC 194 (314)
Q Consensus 152 -----------~-~~~~~~~~~~~~~~~~~~-----g-----------~~~~~~~~~~~~~~~~~~--~~-------~~i 194 (314)
+ ...++.+....++++.++ + .+...+.++.+..-.++. |. ...
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 0 012333444455555432 1 444555555554433332 21 112
Q ss_pred EEEEECCCCC---EEEEeeCCCeEEEeeCCCcEEE
Q 021319 195 YCIAIDPMGR---YFAVGSADSLVSLWDISEMLCV 226 (314)
Q Consensus 195 ~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~~~ 226 (314)
.-+.+..+|+ .++.+.++|.+.+.|.++++.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 3334445665 7889999999999999988775
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.68 E-value=0.48 Score=43.74 Aligned_cols=224 Identities=16% Similarity=0.177 Sum_probs=113.2
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCc--eEEEEEccCCCEEEEEeCC-C-----cEEEEEccCCeEee
Q 021319 79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-D-----ELTILDVRKFKPIH 144 (314)
Q Consensus 79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-~-----~i~i~d~~~~~~~~ 144 (314)
+.+++.||.+ ..+..+|..++.......+... ...++. .++...++|+.+ + ++..||.+..+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3466667666 4677888887755443333221 122332 356777888888 2 46678877665433
Q ss_pred eeccCc-ceeeEEeccCCCeEEEEcCCce-----EEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC---
Q 021319 145 RRKFGY-EVNEIAWNMTGEMFFLTTGNGT-----VEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--- 213 (314)
Q Consensus 145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg--- 213 (314)
...... ....-.-...|..+++|+.+|. +..|+....+ .+..........-.. .-+|+..++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCcc
Confidence 111110 1111112346778888887754 4445443221 111111111111122 23577888888665
Q ss_pred ---eEEEeeCCCcEEEE--EeeecccCeEEEEEccCCcEEEEecCCc-----eEEEEECCCCCeEEE--Eec-cCcccee
Q 021319 214 ---LVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASEDL-----FIDISNVHTGRTVHQ--IPC-RAAMNSV 280 (314)
Q Consensus 214 ---~i~vwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~d~-----~v~v~~~~~~~~~~~--~~~-~~~i~~v 280 (314)
.+..||..+..-.. .+........ .-.-++.+.+.|+.|+ .|..+|..+.+-... +.. +..+-.+
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 46778876654321 1111111111 1224677788888775 256677655432211 111 1222223
Q ss_pred EEcCCCCeeEEEecCCcccccccceEEecccc
Q 021319 281 EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 312 (314)
Q Consensus 281 ~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~ 312 (314)
.+ ++...+.||.|+..+ .+++..|+-+
T Consensus 520 ~~--~~~ly~vGG~~~~~~---l~~ve~ydp~ 546 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGNNN---LNTVECYDPE 546 (571)
T ss_pred EE--CCEEEEEecccCccc---cceeEEcCCC
Confidence 33 567778899887766 5667777643
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.28 Score=45.39 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=97.7
Q ss_pred CCEEEEEEcCCCCCEEEEEe-----CCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-----------
Q 021319 67 DSVDQLCWDPKHADLIATAS-----GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD----------- 130 (314)
Q Consensus 67 ~~v~~l~~~~~~~~~l~s~~-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----------- 130 (314)
..+...+.+|++....+... .|..-.||=...+..............-.|+|+|..+++.....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 45678888998755444442 34444444322222122222222345677999988777664321
Q ss_pred -cEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEE---EeCCCCC-ce---eeee-ecccceEEEEECC
Q 021319 131 -ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---LTYPSLR-PL---DTVV-AHTAGCYCIAIDP 201 (314)
Q Consensus 131 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~-~~---~~~~-~~~~~i~~i~~~~ 201 (314)
.+.+.++....... .....+..+.|+++|..+++.. ++++.+ ....... .+ ..+. .-...+..++|.+
T Consensus 430 gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 430 GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 22222333222211 2345689999999999888766 467766 3322222 11 1121 1222357889999
Q ss_pred CCCEEEEeeCCCeEEEeeCC-CcEEEEEeee--cccCeEEEEEccCCcEEEEecCCceEEEE
Q 021319 202 MGRYFAVGSADSLVSLWDIS-EMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDIS 260 (314)
Q Consensus 202 ~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~d~~v~v~ 260 (314)
+++++ ++..++...+|.+. .+.....+.. ...++.+|+=+|+ .++....++.+.+-
T Consensus 507 ~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l~ 565 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQLP 565 (591)
T ss_pred CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEec
Confidence 88855 55555544455543 1222222122 2346677776663 34445556655544
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.66 E-value=0.23 Score=45.76 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=88.0
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC-----cEEEEEccCCeEeeee
Q 021319 79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR 146 (314)
Q Consensus 79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~ 146 (314)
+.+.+.||.+ ..+..||+.+........+.... ......-+++..++|+.++ ++..||+.+.+.....
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4566677753 34667888776543322221111 1112233677778888754 3778888765443221
Q ss_pred ccCccee-eEEeccCCCeEEEEcCCc-----------------------eEEEEeCCCCC--ceeeeeecccceEEEEEC
Q 021319 147 KFGYEVN-EIAWNMTGEMFFLTTGNG-----------------------TVEVLTYPSLR--PLDTVVAHTAGCYCIAID 200 (314)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~~~~~~~~g-----------------------~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~ 200 (314)
....+.. ..+-..++..+++|+.++ .+..|+....+ .+..+.........++
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-- 461 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-- 461 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--
Confidence 1111111 111133567777776442 34455543221 1111100011111222
Q ss_pred CCCCEEEEeeCCC------eEEEeeCCC-c--EEEEEeeecccCeEEEEEccCCcEEEEecCCc--eEEEEECCC
Q 021319 201 PMGRYFAVGSADS------LVSLWDISE-M--LCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHT 264 (314)
Q Consensus 201 ~~~~~l~t~~~dg------~i~vwd~~~-~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~--~v~v~~~~~ 264 (314)
-+++..+.|+.++ .+..||..+ . ..+..++........+. -++++.+.|+.|+ .+..+|..+
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence 2466767776542 467888875 3 33333322222222222 3788888999887 556666554
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.012 Score=55.70 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=69.2
Q ss_pred CeEEEEcCCceEEEEeCCC-CCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE--
Q 021319 162 EMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-- 238 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-- 238 (314)
..++.++..|.+-..++.. .++...-..-.+++++++|+.+|+.++.|-.+|.|.+||+...+.++.+..+..|...
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3466777778877776644 3332222223568999999999999999999999999999998888877766655444
Q ss_pred -EEEccCCcEEEEecCCce
Q 021319 239 -ISFSHTGDYIASASEDLF 256 (314)
Q Consensus 239 -~~~sp~~~~l~s~s~d~~ 256 (314)
+.+..++..+.++..-|.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc
Confidence 445566777777777775
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0073 Score=57.10 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCEEEEeeCCCeEEEeeCCCcEE-EEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCcccee
Q 021319 203 GRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSV 280 (314)
Q Consensus 203 ~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v 280 (314)
+..++.|++.|.+...|+....+ ...-.....+|.+++|+.+|++++.|=.+|-|.+||++.++.++.+. +..+..+|
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55788899999999999977533 22223456799999999999999999999999999999999888765 33344443
Q ss_pred ---EEcCCCCeeEEEecCCcccc
Q 021319 281 ---EWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 281 ---~~~~~~~~la~~~~d~~~~~ 300 (314)
.|..++..+.++..-++.|+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf~~ 201 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSFWK 201 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCceEE
Confidence 44444555555554444443
No 385
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.47 E-value=0.29 Score=42.57 Aligned_cols=142 Identities=9% Similarity=0.087 Sum_probs=75.6
Q ss_pred eeeEEeccCCCeEEEEc-----------CCc-eEEEEeCCC--CCc--eeeeeecccceEEEEECCCCCEEEEeeCCCeE
Q 021319 152 VNEIAWNMTGEMFFLTT-----------GNG-TVEVLTYPS--LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV 215 (314)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-----------~~g-~~~~~~~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i 215 (314)
...++|.++|.++++.. ..+ .|.++.-.. .+. ...+......+..+++.+++ +++ ++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 45567777777766642 122 666665321 221 22232223346789999888 444 4444433
Q ss_pred EEeeCCC-------cEEE-EEeee----cccCeEEEEEccCCcEEEEecCC-------------------ceEEEEECCC
Q 021319 216 SLWDISE-------MLCV-RTFTK----LEWPVRTISFSHTGDYIASASED-------------------LFIDISNVHT 264 (314)
Q Consensus 216 ~vwd~~~-------~~~~-~~~~~----~~~~v~~~~~sp~~~~l~s~s~d-------------------~~v~v~~~~~ 264 (314)
++.|... .+.+ ..+.. +......++|.|||.+.++-+.. +.+.-++..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 4445431 1111 22222 12346789999999877655521 3344444444
Q ss_pred CCeEEEEecc-CccceeEEcCCCCeeEEEecCC
Q 021319 265 GRTVHQIPCR-AAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 265 ~~~~~~~~~~-~~i~~v~~~~~~~~la~~~~d~ 296 (314)
++ +..+... .....++|+|++.++++-..+.
T Consensus 174 ~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 174 GK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred Ce-EEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 33 3333221 1356899999999987655443
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.46 E-value=0.57 Score=43.27 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=112.0
Q ss_pred CCCCCEEEEeeCCC------cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC------CcEEEEeC
Q 021319 29 NCTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDA 96 (314)
Q Consensus 29 s~~g~~l~s~~~D~------~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D------~~v~iwd~ 96 (314)
+..+..++.||.++ .+..+|..++. +.....+. +...-.+++... +.+.++||.| .++-.||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc--EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecC
Confidence 33456777788773 56677765432 22222222 222233444443 3577888888 45667888
Q ss_pred CCCceeeeEEecCceEEEE-EccCCCEEEEEeCCCc-----EEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcC
Q 021319 97 RSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTG 169 (314)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (314)
+..+......+...-.... -.-+|...++|+.||. +-.||.++.+.-...... ..-..-.-...+..+++++.
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 8777544333322222111 1236778889998874 666776654432211111 11111222446777777775
Q ss_pred Cc------eEEEEeCCCCC-----ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCCcEEEEEeeecc
Q 021319 170 NG------TVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLE 233 (314)
Q Consensus 170 ~g------~~~~~~~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~ 233 (314)
++ .+..|+-.+.+ ++.+-..+ .... .-++.+.+.|+.|+ +|..||..+.+-... ....
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~---~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~ 510 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSG---FGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMT 510 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCccccccc---ceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCc
Confidence 44 34445433221 11111111 1122 22577888888887 367788765433211 1122
Q ss_pred cCeEEEEEc-cCCcEEEEecCCc-----eEEEEECCC
Q 021319 234 WPVRTISFS-HTGDYIASASEDL-----FIDISNVHT 264 (314)
Q Consensus 234 ~~v~~~~~s-p~~~~l~s~s~d~-----~v~v~~~~~ 264 (314)
.+...+... -+++..+.|+.|+ .|..||..+
T Consensus 511 ~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 511 SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 222222222 3567777788774 345555443
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.16 E-value=0.65 Score=38.98 Aligned_cols=261 Identities=11% Similarity=0.109 Sum_probs=117.8
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~ 96 (314)
...+.+|.|..+.+-++.|. .+. |+.....+..+.... .... .-....+.+.. .+.++.| ..+ +.+...
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~ 87 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTT 87 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE------S-----EEEEEEEET--TEEEEEE-ETT-EEEEES
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccc-cCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEec
Confidence 44899999985555566554 564 344444443333221 1111 12345667654 3345544 333 344444
Q ss_pred CCCceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEE-Ec-cCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 97 RSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTIL-DV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 97 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~-d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
+.|+--.... ..+....+....++..++.+ ..+.|..- |- .+.+.+. ......+..+..++++.+++++...
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcc
Confidence 4454333222 22334444444444333333 33332221 11 1222221 1223456777778899888888666
Q ss_pred ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeC-CCcEEEEE----eeecccCeEEEEEccCC
Q 021319 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRT----FTKLEWPVRTISFSHTG 245 (314)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~-~~~~~~~~----~~~~~~~v~~~~~sp~~ 245 (314)
....-|+.....-...-..-...+..|.|+|++.+..++ +.|.|++=+. ........ .......+..++|.|++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 655556543221111111234678999999998775544 8888888872 22222211 11123458899999999
Q ss_pred cEEEEecCCceEEEEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEe
Q 021319 246 DYIASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~ 293 (314)
...|+|+....++ ....|+.=++.+. ....+.|.|.+..+.++.|.
T Consensus 245 ~~wa~gg~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 245 EIWAVGGSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEESTT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CEEEEeCCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 9888777664332 3444554444332 23577898887677776554
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.15 E-value=0.58 Score=38.32 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=86.5
Q ss_pred ceeeEEeccCCCeEEEEc---CCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee-CCCcEEE
Q 021319 151 EVNEIAWNMTGEMFFLTT---GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD-ISEMLCV 226 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd-~~~~~~~ 226 (314)
.+...+.++++..+++.. ....+++.... ....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 567788899998776655 33444444332 2222221 223567778999988877777677777774 2222211
Q ss_pred -EEeeec--ccCeEEEEEccCCcEEEEec---CCceEEEEECC---CC--CeE----EEEe-ccCccceeEEcCCCCeeE
Q 021319 227 -RTFTKL--EWPVRTISFSHTGDYIASAS---EDLFIDISNVH---TG--RTV----HQIP-CRAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 227 -~~~~~~--~~~v~~~~~sp~~~~l~s~s---~d~~v~v~~~~---~~--~~~----~~~~-~~~~i~~v~~~~~~~~la 290 (314)
..+... ...|.++++||||..+|... .++.|.|--+. .+ ..+ .... ....+.+++|.++..+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 112111 12799999999999888665 35677766543 23 111 1111 134789999999998877
Q ss_pred EEecCCc
Q 021319 291 YAGDDKN 297 (314)
Q Consensus 291 ~~~~d~~ 297 (314)
.+.....
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 6665443
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.10 E-value=0.28 Score=45.26 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=72.1
Q ss_pred CCEEEEEeCCC-----cEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEEEeCCC----------------------
Q 021319 79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDD---------------------- 130 (314)
Q Consensus 79 ~~~l~s~~~D~-----~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~---------------------- 130 (314)
+.+.+.||.++ ++..||..+........+...... ....-+++..++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 35666677653 478899887765432222211111 11123677777787652
Q ss_pred -cEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC------ceEEEEeCCC-CC--ceeeeeecccceEEEEE
Q 021319 131 -ELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN------GTVEVLTYPS-LR--PLDTVVAHTAGCYCIAI 199 (314)
Q Consensus 131 -~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~-~~--~~~~~~~~~~~i~~i~~ 199 (314)
.+..||+++.+........ ..........++..+++|+.+ ..+..|+... .+ .+..+.........+++
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence 3667887765443211110 011111223456677777643 2345566543 21 12222222222223333
Q ss_pred CCCCCEEEEeeCCC--eEEEeeCCCc
Q 021319 200 DPMGRYFAVGSADS--LVSLWDISEM 223 (314)
Q Consensus 200 ~~~~~~l~t~~~dg--~i~vwd~~~~ 223 (314)
+++..++|+.+| .+..||..+.
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred --CCEEEEEeeecceeehhhcCcccc
Confidence 678889999888 6667776554
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.19 Score=48.45 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=83.6
Q ss_pred eEEEEEccCCCEEEEEeC--CCcEEEEEccCCeE--------eeee----ccCcceeeEEeccCCC-eEEEEcCCceEEE
Q 021319 111 NINITYKPDGTHIAVGNR--DDELTILDVRKFKP--------IHRR----KFGYEVNEIAWNMTGE-MFFLTTGNGTVEV 175 (314)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~--------~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 175 (314)
+..+...+|+...++... +..|..||++.... ++.. .......++.|.|.-. ..++...++.+++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 345566778766655433 33688899976432 1111 1122345667777654 3455667787777
Q ss_pred EeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee---c-ccCeEEEEEccCCcEEE
Q 021319 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---L-EWPVRTISFSHTGDYIA 249 (314)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~-~~~v~~~~~sp~~~~l~ 249 (314)
.......+...-..-....+|++|+|.|+.++.|-.+|++.-|-.. +.+...+.. . ...|.+|+|=..-.+|+
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 7654332221111224457999999999999999999999998753 322222221 2 25688888866665555
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.99 E-value=0.98 Score=39.49 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=97.5
Q ss_pred ccEEEEEEC-----------CCCCEEEEee-CCCcEEEeecCCCCCCceeeEEeec---C-----CC--CEEEEEEcCCC
Q 021319 21 KKVHSVAWN-----------CTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG---H-----AD--SVDQLCWDPKH 78 (314)
Q Consensus 21 ~~V~~v~~s-----------~~g~~l~s~~-~D~~v~iw~~~~~~~~~~~~~~~~~---h-----~~--~v~~l~~~~~~ 78 (314)
++++..-|+ .+.++|+..+ ..+.|.|.|+.+..........+.. + +. .+.| -|+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc---lp~- 140 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC---LPD- 140 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE----SS-
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee---cCC-
Confidence 466666665 2345666665 7889999998754322222111211 0 11 1222 243
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCceeeeEEecCc--e--EEEEEccCCCEEEEEeC--------------------
Q 021319 79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--N--INITYKPDGTHIAVGNR-------------------- 128 (314)
Q Consensus 79 ~~~l~s~~~D------~~v~iwd~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~-------------------- 128 (314)
+++++|+-.| |.+-+.|-.+-.+....+.... . ..+-+.|..+.++++..
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 4566665332 4556666655544443333221 1 23556777777777654
Q ss_pred CCcEEEEEccCCeEeeeeccCc---ceeeEEe--ccCCCeEEEE-cCCceEEEEeC-CCCC----ceeeeee--------
Q 021319 129 DDELTILDVRKFKPIHRRKFGY---EVNEIAW--NMTGEMFFLT-TGNGTVEVLTY-PSLR----PLDTVVA-------- 189 (314)
Q Consensus 129 d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~-~~~g~~~~~~~-~~~~----~~~~~~~-------- 189 (314)
..++.+||+++.+.++.+..+. -...+.| .|....-+++ .-.++|..|.- ...+ .+..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 3479999999999999887763 2345555 3444443333 34445544432 2111 1111111
Q ss_pred ---------cccceEEEEECCCCCEEEE-eeCCCeEEEeeCCCcEE---EEEee-e---------------cccCeEEEE
Q 021319 190 ---------HTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLC---VRTFT-K---------------LEWPVRTIS 240 (314)
Q Consensus 190 ---------~~~~i~~i~~~~~~~~l~t-~~~dg~i~vwd~~~~~~---~~~~~-~---------------~~~~v~~~~ 240 (314)
-..=|+.|.+|.|.++|.. +=..|.|+.||+.+... ..++. + ......-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 1233689999999999764 45689999999976432 22211 1 111235577
Q ss_pred EccCCcEEEEe
Q 021319 241 FSHTGDYIASA 251 (314)
Q Consensus 241 ~sp~~~~l~s~ 251 (314)
.|.||+.|...
T Consensus 381 lS~DGkRlYvT 391 (461)
T PF05694_consen 381 LSLDGKRLYVT 391 (461)
T ss_dssp E-TTSSEEEEE
T ss_pred EccCCeEEEEE
Confidence 88888776644
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.96 E-value=0.49 Score=38.76 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=63.7
Q ss_pred ceEEEEECCCCCEEEEee---CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEE-CCCCCeE
Q 021319 193 GCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV 268 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~-~~~~~~~ 268 (314)
.+...+++++++.+|.-. ....+.++........ .+.+ ..+..-+|++++...+....+....++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678999999999776544 2334555554332211 1122 2566678999988887777666666663 3333322
Q ss_pred -EEEec---cCccceeEEcCCCCeeEEEecCC
Q 021319 269 -HQIPC---RAAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 269 -~~~~~---~~~i~~v~~~~~~~~la~~~~d~ 296 (314)
..+.. .+.|.++++||||.-+|....+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecC
Confidence 12221 22799999999999988887554
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.94 E-value=1.1 Score=39.66 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=111.1
Q ss_pred EEEEEEcCCCCCEEEEEeCCC----cEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCC-----------cEE
Q 021319 69 VDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT 133 (314)
Q Consensus 69 v~~l~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~ 133 (314)
+...+++|++..++++-+..| .+++.|+.+++.+...........+.|.++++.++-...+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 346788898754554544444 48999999997654321111222399999988877665443 255
Q ss_pred EEEccCCe----EeeeeccCcc-eeeEEeccCCCeEEEEcC---C-ceEEEEeCCCC----CceeeeeecccceEEEEEC
Q 021319 134 ILDVRKFK----PIHRRKFGYE-VNEIAWNMTGEMFFLTTG---N-GTVEVLTYPSL----RPLDTVVAHTAGCYCIAID 200 (314)
Q Consensus 134 i~d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-g~~~~~~~~~~----~~~~~~~~~~~~i~~i~~~ 200 (314)
.+.+.+.. .+........ ...+..+.+++++++... + ..+.+.++... .....+......+....-+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 66655432 2332222222 456778889988776532 2 45666666553 2233333333333332222
Q ss_pred CCCCEEEEeeC---CCeEEEeeCCCcE---EEEEeeecccCeEEEEEccCCcEEE-EecCCc--eEEEEECCCCCeEEEE
Q 021319 201 PMGRYFAVGSA---DSLVSLWDISEML---CVRTFTKLEWPVRTISFSHTGDYIA-SASEDL--FIDISNVHTGRTVHQI 271 (314)
Q Consensus 201 ~~~~~l~t~~~---dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~d~--~v~v~~~~~~~~~~~~ 271 (314)
..+.+++.... ++.|.-.++.... ....+..+...+.-..+...+.+|+ +--.++ .|.+++...+.....+
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~ 365 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI 365 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence 24444443322 3456666766543 1224444444333344445555444 444554 5788888744444444
Q ss_pred ec--cCccceeEEcCCCCe
Q 021319 272 PC--RAAMNSVEWNPKYNL 288 (314)
Q Consensus 272 ~~--~~~i~~v~~~~~~~~ 288 (314)
+. .+.|..+...++.+.
T Consensus 366 ~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 366 PLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp ESSSSSEEEEEES-TT-SE
T ss_pred cCCcceEEeccCCCCCCCE
Confidence 43 344555555554433
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.77 E-value=1.9 Score=41.23 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=111.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEEecCceE---------EEEEc----------------cCCCEEEEEeCCCcEEE
Q 021319 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENI---------NITYK----------------PDGTHIAVGNRDDELTI 134 (314)
Q Consensus 80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~---------~~~~~----------------~~~~~l~~~~~d~~i~i 134 (314)
+.+..++.++.|.-.|..+|+..-....+.... .+.+. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 466777888888888988888665543322110 01111 13447888999999999
Q ss_pred EEccCCeEeeeeccCccee-------------eEEecc--CCCeEEEEcC----------CceEEEEeCCCCCceeeeee
Q 021319 135 LDVRKFKPIHRRKFGYEVN-------------EIAWNM--TGEMFFLTTG----------NGTVEVLTYPSLRPLDTVVA 189 (314)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~ 189 (314)
+|.++.+.+.......++. ...-.| .+..++++.. +|.++.+|..+.+.+-.+..
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999988875543221110 000111 1344555532 58889998877665443321
Q ss_pred ----------------cc-cce-EEEEECCCCCEEEEeeC------------------CCeEEEeeCCCcEEEEEeeecc
Q 021319 190 ----------------HT-AGC-YCIAIDPMGRYFAVGSA------------------DSLVSLWDISEMLCVRTFTKLE 233 (314)
Q Consensus 190 ----------------~~-~~i-~~i~~~~~~~~l~t~~~------------------dg~i~vwd~~~~~~~~~~~~~~ 233 (314)
+. ..+ ..+++++....+..+.. .+.|.-.|.++++..-.++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 00 011 23455555444433221 2345666777777665554311
Q ss_pred cC---------eEEEEEcc-CCc---EEEEecCCceEEEEECCCCCeEEEEe
Q 021319 234 WP---------VRTISFSH-TGD---YIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 234 ~~---------v~~~~~sp-~~~---~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
.. ..-+.+.- +|+ .++.++++|.+++.|..+|+.+...+
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 11 11123332 563 89999999999999999999987653
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.69 E-value=1.4 Score=38.82 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=56.0
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEE-EE-EccC----------------Cc-EEEEecC
Q 021319 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-IS-FSHT----------------GD-YIASASE 253 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~-~sp~----------------~~-~l~s~s~ 253 (314)
.+.++..+|++++.|+.+.=|.|.++|+.++..++-.+++..+-.. +. ..+. .. +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3678999999999999888899999999998887777776543111 00 0011 11 2445667
Q ss_pred CceEEEEECCCCCeEEEEe
Q 021319 254 DLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 254 d~~v~v~~~~~~~~~~~~~ 272 (314)
=|.+.||.+.+|..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 7888999988887776554
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.98 Score=37.17 Aligned_cols=164 Identities=10% Similarity=0.174 Sum_probs=100.5
Q ss_pred cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccC--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCcee
Q 021319 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185 (314)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 185 (314)
......++|+|+.+.|++......-.++=-..++.+.++... .....+.|.-.+.+.++--.++.+..+.......+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345667999999999998887777666655666777766443 345566666666666665667777777654332111
Q ss_pred -----eee----ec-ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcE---EEEEeee-------cccCeEEEEEccC-
Q 021319 186 -----TVV----AH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---CVRTFTK-------LEWPVRTISFSHT- 244 (314)
Q Consensus 186 -----~~~----~~-~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~-------~~~~v~~~~~sp~- 244 (314)
.+. .+ +.+-..++++|....|..+-...-+.+|.+.... .+..... .-..++.+.|++.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 111 12 4456789999988887777666667777664322 1111111 1235778889865
Q ss_pred CcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 245 GDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 245 ~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
+..|+-+.++..+-..|. +|.++..+.
T Consensus 245 ~~LLVLS~ESr~l~Evd~-~G~~~~~ls 271 (316)
T COG3204 245 NSLLVLSDESRRLLEVDL-SGEVIELLS 271 (316)
T ss_pred CcEEEEecCCceEEEEec-CCCeeeeEE
Confidence 556666666776666665 455555544
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.39 E-value=2.7 Score=40.39 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=144.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCC--CCC---EEEEEeCCCcEEEEeC
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWDA 96 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~---~l~s~~~D~~v~iwd~ 96 (314)
.++....+.+..+++-++.++.+...+++... .....-..-...|.|+.++|. +.+ +++.|.++..+.+--.
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 34444444455566666655555555544322 111111122456888888865 334 8888988877765543
Q ss_pred CCCceeeeE-EecC-----ceEEEEEccCCCEEEEEeCCCcEEEEEc--cCCeEeeee--ccC-cceeeEEeccCCCeEE
Q 021319 97 RSGKCSQQA-ELSG-----ENINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFG-YEVNEIAWNMTGEMFF 165 (314)
Q Consensus 97 ~~~~~~~~~-~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 165 (314)
....+.... .+.. .++-.++-.|..+|.++..||.+..+.+ .+.+.-.+. ..+ .++.--.|+......+
T Consensus 566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE
Confidence 222222211 1222 2334556667889999999999876654 443332222 222 3334444555555555
Q ss_pred EEcCCceEEEEeCCCCCceeeeeecccceE-EEEECCC--CCEEEEeeCCCeEEEeeCCCcEE--EEEeeecccCeEEEE
Q 021319 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPM--GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTIS 240 (314)
Q Consensus 166 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~--~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~ 240 (314)
++..+.-..+|.....-....+ .-..+. ...|+.+ ...|+++. .+.+++..++.-+. ++++. .....+.++
T Consensus 646 fa~sdrP~viY~~n~kLv~spl--s~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~ 721 (1096)
T KOG1897|consen 646 FALSDRPTVIYSSNGKLVYSPL--SLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRIC 721 (1096)
T ss_pred EEeCCCCEEEEecCCcEEEecc--chHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheE
Confidence 5555544444433211000000 000111 1123222 34556554 45578877765433 34443 233567788
Q ss_pred EccCCcEEEEecC-----------C---ceEEEEECCCCCeEEEEec-----cCccceeEEcCC-CCeeEEEecCCcccc
Q 021319 241 FSHTGDYIASASE-----------D---LFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPK-YNLLAYAGDDKNKYQ 300 (314)
Q Consensus 241 ~sp~~~~l~s~s~-----------d---~~v~v~~~~~~~~~~~~~~-----~~~i~~v~~~~~-~~~la~~~~d~~~~~ 300 (314)
+.+....+++.+. . ..++++|-+|-+.+..... ..+|.++.|+.| +.+++.|..- .|.
T Consensus 722 ~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~--v~P 799 (1096)
T KOG1897|consen 722 YQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL--VYP 799 (1096)
T ss_pred ecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe--ecc
Confidence 8886655554332 1 3466777666555533221 235777889988 6666666532 332
Q ss_pred ----cccceEEeccccC
Q 021319 301 ----ADEGVFRIYGFEN 313 (314)
Q Consensus 301 ----~~~~~~~~~~~~~ 313 (314)
++.|-+-||-|++
T Consensus 800 de~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEE 816 (1096)
T ss_pred CCCCcccceEEEEEEec
Confidence 5567777777754
No 398
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.21 E-value=1.5 Score=36.29 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee------------
Q 021319 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR------------ 146 (314)
Q Consensus 79 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------ 146 (314)
++.|+.|..+| +.+++...............+..+...|+-+.+++-+ |+.+.++++....+....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 46778888888 8888883222222222222356677777666655543 499999998765443311
Q ss_pred -cc--CcceeeEE--eccCCCeEEEEcCCceEEEEeCCCC-----CceeeeeecccceEEEEECCCCCEEEEeeCCCeEE
Q 021319 147 -KF--GYEVNEIA--WNMTGEMFFLTTGNGTVEVLTYPSL-----RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (314)
Q Consensus 147 -~~--~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~ 216 (314)
.. ...+...+ -...+...++.....++.+|.+... +..+++ .-...+..++|. ++.++.|..++ ..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSKG-FY 160 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc-eE
Confidence 11 11122222 1233444444445558888877542 223332 234668888887 66777777655 88
Q ss_pred EeeCCCcEE
Q 021319 217 LWDISEMLC 225 (314)
Q Consensus 217 vwd~~~~~~ 225 (314)
+.|+.++..
T Consensus 161 ~idl~~~~~ 169 (275)
T PF00780_consen 161 LIDLNTGSP 169 (275)
T ss_pred EEecCCCCc
Confidence 889886544
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.20 E-value=1.2 Score=35.35 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=88.1
Q ss_pred ceeeEEeccCCCeEEEEcCC---------ceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEee-
Q 021319 151 EVNEIAWNMTGEMFFLTTGN---------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWD- 219 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd- 219 (314)
+.+.-.-+|+|+++.-...+ |.++.|.... .+..+..--.-.+.++|+.+.+.+. +-+.+=.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34455567888886544332 3333333211 0111111112235788888776654 555566787788
Q ss_pred -CCCcE-----EEEEeee---cc-cCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEec-cCccceeEEc-CCCC
Q 021319 220 -ISEML-----CVRTFTK---LE-WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWN-PKYN 287 (314)
Q Consensus 220 -~~~~~-----~~~~~~~---~~-~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~-~~~i~~v~~~-~~~~ 287 (314)
..++. .+..+++ .+ .....++..-+|.+.++.=.-++|.-.|..+|+.+.++.. ...|++++|- |+..
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 44442 2222222 11 1122345556677777666778888889999999988765 4569999997 4444
Q ss_pred ee-EEEecCCc-----cccc-ccceEEecccc
Q 021319 288 LL-AYAGDDKN-----KYQA-DEGVFRIYGFE 312 (314)
Q Consensus 288 ~l-a~~~~d~~-----~~~~-~~~~~~~~~~~ 312 (314)
.| +|+..+.+ .=++ -++++||=|++
T Consensus 268 ~~yvT~aa~~~dp~~~~~~p~aG~iykitgl~ 299 (310)
T KOG4499|consen 268 ILYVTTAAKFDDPVRTNTDPNAGTIYKITGLN 299 (310)
T ss_pred EEEEEehhcccCchhcccCCCCccEEEecCcc
Confidence 44 33333211 1123 35677887764
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.18 E-value=0.98 Score=41.78 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=67.9
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEee-ecccCeEEEEEc--cCCcEEEEecCCceEEEEECC-------
Q 021319 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS--HTGDYIASASEDLFIDISNVH------- 263 (314)
Q Consensus 194 i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~s~s~d~~v~v~~~~------- 263 (314)
+.-+.-+.-++..++-+....+.|||.+.+....+-. ....+|.+++|. |+++.+++.+-...|.++.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444445555554554445579999998776432211 235689999886 889999999999999888531
Q ss_pred --CCCeEEEEec----cCccceeEEcCCCCeeEEEecC
Q 021319 264 --TGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDD 295 (314)
Q Consensus 264 --~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d 295 (314)
+..+++++.. .-+|.+..|-++|.+++.+|..
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq 149 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ 149 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE
Confidence 1234444432 2379999999999888766643
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.15 E-value=0.12 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.6
Q ss_pred cceEEEEECCCC---CEEEEeeCCCeEEEeeCCCc
Q 021319 192 AGCYCIAIDPMG---RYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 192 ~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~ 223 (314)
+++.++.|+|+. .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 357899999854 58998988999999999853
No 402
>PHA03098 kelch-like protein; Provisional
Probab=94.90 E-value=3.1 Score=38.29 Aligned_cols=188 Identities=10% Similarity=0.096 Sum_probs=86.9
Q ss_pred cCCCEEEEEeCCC------cEEEEEccCCeEeeeeccC-cceeeEEeccCCCeEEEEcCC-----ceEEEEeCCCCCc--
Q 021319 118 PDGTHIAVGNRDD------ELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-----GTVEVLTYPSLRP-- 183 (314)
Q Consensus 118 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~-- 183 (314)
.++..++.|+.++ .+..||+.+.+........ ..........++..++.|+.+ ..+..|+....+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 3556666776543 4667887765543221111 111111122356677777654 2345555433221
Q ss_pred eeeeeecccceEEEEECCCCCEEEEeeCC------CeEEEeeCCCcEEEEEeeecccC-eEEEEEccCCcEEEEecCC--
Q 021319 184 LDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED-- 254 (314)
Q Consensus 184 ~~~~~~~~~~i~~i~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~d-- 254 (314)
...+. +...-.+++ .-++++.+.|+.+ ..+..||..+.+-.. ......+ ....+...++...+.|+.+
T Consensus 373 ~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 373 EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCEEEEECCccCC
Confidence 11111 111011122 2356777777732 357888887653321 1111111 0111233466777777643
Q ss_pred ------ceEEEEECCCCC--eEEEEec-cCccceeEEcCCCCeeEEEecCCcccccccceEEeccccC
Q 021319 255 ------LFIDISNVHTGR--TVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 313 (314)
Q Consensus 255 ------~~v~v~~~~~~~--~~~~~~~-~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 313 (314)
..+.++|..+.+ .+..++. +..-..+.. ++.+++.||.+...+ ...+.+|+.+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~v~~yd~~~ 512 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYY---INEIEVYDDKT 512 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcc---cceeEEEeCCC
Confidence 237788876643 2111111 111122222 677888888765432 35677777654
No 403
>PHA03098 kelch-like protein; Provisional
Probab=94.87 E-value=2.4 Score=39.00 Aligned_cols=182 Identities=10% Similarity=0.061 Sum_probs=82.1
Q ss_pred CCEEEEEeCCC------cEEEEeCCCCceeeeEEecCce-EEEEEccCCCEEEEEeCCC-----cEEEEEccCCeEeeee
Q 021319 79 ADLIATASGDK------TVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR 146 (314)
Q Consensus 79 ~~~l~s~~~D~------~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~ 146 (314)
+.+++.||.++ .+..||..+.+......+.... ......-+++..+.|+.++ .+..||+.+.+.....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 34666666542 5677888777654322221111 1111223677777887653 4667777665433211
Q ss_pred ccCcc-eeeEEeccCCCeEEEEcCC------ceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC----
Q 021319 147 KFGYE-VNEIAWNMTGEMFFLTTGN------GTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---- 213 (314)
Q Consensus 147 ~~~~~-~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg---- 213 (314)
....+ ....+-..++..+++|+.. ..+..|+..+.+ .+..+........++ ..+++..+.|+.+.
T Consensus 375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCC
Confidence 11111 1111122355666666521 345666654321 111111001111122 22466667776432
Q ss_pred ----eEEEeeCCCcEEEE--EeeecccCeEEEEEccCCcEEEEecCC-----ceEEEEECCC
Q 021319 214 ----LVSLWDISEMLCVR--TFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHT 264 (314)
Q Consensus 214 ----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~d-----~~v~v~~~~~ 264 (314)
.+..||..+.+-.. .+.........+. .++++++.|+.+ ..+.++|..+
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 37888887654322 1111111111122 366777777654 3455666544
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.45 E-value=0.28 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCCC--CEEEEEeCCCcEEEEeCCCC
Q 021319 67 DSVDQLCWDPKHA--DLIATASGDKTVRLWDARSG 99 (314)
Q Consensus 67 ~~v~~l~~~~~~~--~~l~s~~~D~~v~iwd~~~~ 99 (314)
++|.++.|+|... ++|+-+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998765 78888878899999999864
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.40 E-value=1.3 Score=31.90 Aligned_cols=85 Identities=9% Similarity=0.096 Sum_probs=53.7
Q ss_pred EECCCCCEEEEeeCCCeEEEeeCCCcEEE-------EEeeecccCeEEEEEcc-----CCcEEEEecCCceEEEEECCCC
Q 021319 198 AIDPMGRYFAVGSADSLVSLWDISEMLCV-------RTFTKLEWPVRTISFSH-----TGDYIASASEDLFIDISNVHTG 265 (314)
Q Consensus 198 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-------~~~~~~~~~v~~~~~sp-----~~~~l~s~s~d~~v~v~~~~~~ 265 (314)
.|+.....|+.++.-|+|.|++....... -.+.+....|.+|+--| +.+.|+.|+.. .+..||++..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence 46666667888888999999987533211 12334556777776443 24567666655 4889999876
Q ss_pred CeEEEEeccCccceeEEc
Q 021319 266 RTVHQIPCRAAMNSVEWN 283 (314)
Q Consensus 266 ~~~~~~~~~~~i~~v~~~ 283 (314)
..+........++++.+-
T Consensus 84 ~d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIG 101 (136)
T ss_pred chhhhhhCccceeEEEEE
Confidence 655433334567777663
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.35 E-value=5.3 Score=38.58 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=114.5
Q ss_pred eEEecCceEEEEEccCCCEEEEEeCC--------------CcEEEEEccCCeEeeeecc-----CcceeeEEeccC-CCe
Q 021319 104 QAELSGENINITYKPDGTHIAVGNRD--------------DELTILDVRKFKPIHRRKF-----GYEVNEIAWNMT-GEM 163 (314)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~ 163 (314)
+.........+++.+....+.+.+.. ..+.++|-.+++.++..+. ...+.++.+.-+ +.+
T Consensus 710 tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~ 789 (1096)
T KOG1897|consen 710 TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTY 789 (1096)
T ss_pred eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceE
Confidence 34445555566666643333333221 1366777777766654433 234555567666 566
Q ss_pred EEEEcC----------CceEEEEeCCCCCceeeeeec--ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee
Q 021319 164 FFLTTG----------NGTVEVLTYPSLRPLDTVVAH--TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (314)
Q Consensus 164 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 231 (314)
+++|+. .|++.++.+.....+.....+ .+.++++.. -+|+++|. -+..|++|+..+.+.++.-..
T Consensus 790 ~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~ 866 (1096)
T KOG1897|consen 790 YVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECN 866 (1096)
T ss_pred EEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhc
Confidence 666653 588888887665544444322 234444432 25666653 466799999988866666666
Q ss_pred cccCeEEEEEccCCcEEEEecCCceEEEEECC--CCCeEEEEe--ccCccceeEEcCCCCeeEEEecCCccc
Q 021319 232 LEWPVRTISFSHTGDYIASASEDLFIDISNVH--TGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 232 ~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~--~~~~~~~~~--~~~~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
+..++..+...-.+..++.|..-+.+.+-... .|....... +...++++++-.+..+| -+-.+++.|
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf 937 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLF 937 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEE
Confidence 77788999999999999999888777665543 332332221 13356777776555554 344455555
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=94.34 E-value=3.9 Score=37.06 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCEEEEEeCC--CcEEEEeCCCCceeeeEEecCceE-EEEEccCCCEEEEEeCCC---cEEEEEccCCeEeeeeccCcce
Q 021319 79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEV 152 (314)
Q Consensus 79 ~~~l~s~~~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~ 152 (314)
+.+.+.||.+ .++..||..+++......+..... .....-+++..++|+.++ .+..||+++.+.........+.
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4565666653 467888887665443322221111 112233677777877654 3667888765543321111111
Q ss_pred -eeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceeeeeecccceEEEEECCCCCEEEEeeCCC-----eEEEeeCCC
Q 021319 153 -NEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISE 222 (314)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg-----~i~vwd~~~ 222 (314)
...+...++..++.|+ ....|+....+ .+..+.........+.+ +++..+.|+.++ .+..||..+
T Consensus 399 ~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 1112234555666553 45566654322 11111111111222222 577778887652 355555543
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.24 E-value=0.026 Score=52.68 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=49.7
Q ss_pred ceeeEEeccC---CCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEE-----------EECCCCCEEEEeeCCCeEE
Q 021319 151 EVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI-----------AIDPMGRYFAVGSADSLVS 216 (314)
Q Consensus 151 ~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i-----------~~~~~~~~l~t~~~dg~i~ 216 (314)
.+.-+.|.|- ..+.-.+..++.+++........ ..+.+|...+..+ .++|||+.+|.++.||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 3445555542 23333445567777776543221 2334466554433 3799999999999999999
Q ss_pred EeeC-----CCcEEEEEeeecc
Q 021319 217 LWDI-----SEMLCVRTFTKLE 233 (314)
Q Consensus 217 vwd~-----~~~~~~~~~~~~~ 233 (314)
.|.+ ....|+...+.|+
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 8875 2334555666665
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.21 E-value=4.4 Score=37.68 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=40.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEEe--cCceEEEE--EccCCCEEEEEeCCCcEEEEEc
Q 021319 81 LIATASGDKTVRLWDARSGKCSQQAEL--SGENINIT--YKPDGTHIAVGNRDDELTILDV 137 (314)
Q Consensus 81 ~l~s~~~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~ 137 (314)
..+.-+...++.|||.+.+.......+ .+.+..+. ..|++..+.+.+..+.|.++.-
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 444444556889999998886655555 44455544 4689999888888888888753
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=2.9 Score=34.51 Aligned_cols=160 Identities=13% Similarity=0.240 Sum_probs=103.5
Q ss_pred eecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecC--ceEEEEEccCCCEEEEEeCCCcEEEEEccC
Q 021319 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRK 139 (314)
Q Consensus 62 ~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (314)
+.|-...+.+++|+|+.. .|.+......-.++-...|+.++..++.+ ..-.+.+..++.++++-.++..+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 445555599999999865 45555566666777667788888776654 344688888888888888888888876654
Q ss_pred CeEeee-----ecc------CcceeeEEeccCCCeEEEEcCCceEEEEeCCCCC-cee--eeeec-------ccceEEEE
Q 021319 140 FKPIHR-----RKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLD--TVVAH-------TAGCYCIA 198 (314)
Q Consensus 140 ~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~--~~~~~-------~~~i~~i~ 198 (314)
...+.. +.. ..-...++|.+....++++-+..-+.+|...... .+. ....+ -..+..+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 322111 111 2335678999999999999888877777654322 110 00011 12355667
Q ss_pred ECC-CCCEEEEeeCCCeEEEeeCCC
Q 021319 199 IDP-MGRYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 199 ~~~-~~~~l~t~~~dg~i~vwd~~~ 222 (314)
+++ ++..|+.+..++.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 775 456677777777777777653
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=94.04 E-value=3.5 Score=35.36 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=60.2
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEE
Q 021319 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 270 (314)
Q Consensus 191 ~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~ 270 (314)
...+..+.+.|++.+++++......+.+|-....-..........+.++.+.|+++.++.+ ..|.+.+-....|..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 3467889999998877766543333333322111111122344578899999999877654 557665433344433221
Q ss_pred --Ee---ccCccceeEEcCCCCeeEEEecCCcc
Q 021319 271 --IP---CRAAMNSVEWNPKYNLLAYAGDDKNK 298 (314)
Q Consensus 271 --~~---~~~~i~~v~~~~~~~~la~~~~d~~~ 298 (314)
.+ ....+.+++|.|++.+++.+ .++.+
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v 282 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL 282 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence 11 12347889999987766544 44433
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.74 E-value=0.57 Score=43.22 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCCCEEEEeeCCCeEEEeeCCC----cEEEEE--eee--------------------cccCeEEEEEcc----CCcEEEE
Q 021319 201 PMGRYFAVGSADSLVSLWDISE----MLCVRT--FTK--------------------LEWPVRTISFSH----TGDYIAS 250 (314)
Q Consensus 201 ~~~~~l~t~~~dg~i~vwd~~~----~~~~~~--~~~--------------------~~~~v~~~~~sp----~~~~l~s 250 (314)
++...++.+..||.+....... +..... +.. ....+..++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566788888899888887654 111111 110 012355667777 7899999
Q ss_pred ecCCceEEEEECCCCCeEEEE
Q 021319 251 ASEDLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~ 271 (314)
.+.|+.+++||+.++..+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999987654
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.69 E-value=6.7 Score=37.40 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=52.7
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCC--------C-CceeeEE--------eecCCCCEEEEEEcCCC--CCEE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------H-GKVKDIE--------LRGHADSVDQLCWDPKH--ADLI 82 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~--------~-~~~~~~~--------~~~h~~~v~~l~~~~~~--~~~l 82 (314)
.|+.|..+|+|++++-.|..+.+.+ .+.... . ..+.... ...+...|..+.|+|.+ +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 7999999999999999988665544 332110 0 1111111 12345678899999974 4577
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 021319 83 ATASGDKTVRLWDARSGK 100 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~ 100 (314)
+.=..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 778899999999997543
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.46 E-value=3.8 Score=37.24 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=63.5
Q ss_pred cceEEEEECCCC-----CEEEEeeCCCeEEEeeCCC-----c--EEEEEeee-cccCe--EEEEEccCCcEEEEecCCce
Q 021319 192 AGCYCIAIDPMG-----RYFAVGSADSLVSLWDISE-----M--LCVRTFTK-LEWPV--RTISFSHTGDYIASASEDLF 256 (314)
Q Consensus 192 ~~i~~i~~~~~~-----~~l~t~~~dg~i~vwd~~~-----~--~~~~~~~~-~~~~v--~~~~~sp~~~~l~s~s~d~~ 256 (314)
..+..++|.|-+ .+||+ -....|.||.+-. . .+-++.+- ...+| ..+-|+|....|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 457888898853 34554 4677899999841 1 11222211 11122 23569999999987766554
Q ss_pred EEEEECCC--CCeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319 257 IDISNVHT--GRTVHQIPCRAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 257 v~v~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~la~~~ 293 (314)
--+++++. .+..-.+...+.|.|.+|.+||+.|+.+-
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence 45566653 33334466788999999999998875543
No 415
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.14 E-value=0.74 Score=25.40 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.3
Q ss_pred cCCcEEEEec-CCceEEEEECCCCCeEEEEeccCccceeEE
Q 021319 243 HTGDYIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEW 282 (314)
Q Consensus 243 p~~~~l~s~s-~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~ 282 (314)
|++++|+.+. .++.|.++|..+++.+..++....-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 6777666655 578899999999988888776544555555
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=3.6 Score=32.26 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCCEEEEEeC--CCcEEEEEccCCeEeeeeccCc-ceeeEEeccCCCe-EEEEcCCceEEEEeCCCCCceeeeeecccce
Q 021319 119 DGTHIAVGNR--DDELTILDVRKFKPIHRRKFGY-EVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194 (314)
Q Consensus 119 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 194 (314)
+|.++.+.+. ...|++||+.+.+.+....... ++..-....-++. .+..-.+|.-..++..+.+.+..+. .+++-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 3444444443 3458999999888776654431 1111111111222 2333455666666666555444332 12233
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec--ccCe---EEEEEccCCcEEEEecCCceEEEEECCCCCeEE
Q 021319 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPV---RTISFSHTGDYIASASEDLFIDISNVHTGRTVH 269 (314)
Q Consensus 195 ~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v---~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~ 269 (314)
+.++ .|+.-|..++...+++.-|.++.....++... ..|| +.+.| -+|...|-.=.+..|-..+..+|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEE
Confidence 3433 45666777776777888887766554443322 1122 23333 356666666666667777888888776
Q ss_pred EEec-------------cCccceeEEcCCC-CeeEEEecCCccc
Q 021319 270 QIPC-------------RAAMNSVEWNPKY-NLLAYAGDDKNKY 299 (314)
Q Consensus 270 ~~~~-------------~~~i~~v~~~~~~-~~la~~~~d~~~~ 299 (314)
.+.. ....|.+|+-|++ +++.+|-.=..+|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lf 254 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLF 254 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeE
Confidence 6532 1246899999987 6677766555555
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.93 E-value=3.7 Score=36.71 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=78.6
Q ss_pred ccCCCEEEE-EeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCC-------CeEEEEcCCceEEEEeCCC-CCceeee
Q 021319 117 KPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-------EMFFLTTGNGTVEVLTYPS-LRPLDTV 187 (314)
Q Consensus 117 ~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~-~~~~~~~ 187 (314)
..+..++.. |.....+.-.|++.++.+........+ -+.+.|.. ...++|..+..+...+-+- +..+...
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 334444443 444555666677777776665554444 45555542 3455666555554444321 1111111
Q ss_pred eec----ccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 188 VAH----TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 188 ~~~----~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
... ...-.|.. ....-++|.|+..|-|++||--.-.-...+++...+|..|..+.+|+++++..... +-+.|+
T Consensus 555 esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y-llL~d~ 631 (776)
T COG5167 555 ESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY-LLLTDV 631 (776)
T ss_pred eehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce-EEEEec
Confidence 110 01111222 22345899999999999999643333334566677888899999998876554443 344443
No 418
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.82 E-value=5.9 Score=34.34 Aligned_cols=152 Identities=10% Similarity=0.060 Sum_probs=74.6
Q ss_pred EeccCCCeEEEEcC---CceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeec
Q 021319 156 AWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (314)
Q Consensus 156 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 232 (314)
.|..+|+.+++++. ..++...++.+.+..+...+-........++|+.+.++--..+..++--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46677877766554 456666677666543322221122234556788887655445567888899887665555444
Q ss_pred ccCeEEEEEc--cCCcEEEEe---cC-------------------CceEEEEECCCCCeEEEEeccCccceeEEcCCC-C
Q 021319 233 EWPVRTISFS--HTGDYIASA---SE-------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY-N 287 (314)
Q Consensus 233 ~~~v~~~~~s--p~~~~l~s~---s~-------------------d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~-~ 287 (314)
+.-+....|. .++..++-. -. ...|.-.|+.+|+....+....-+.=+-|+|.. .
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 4444445553 445544321 11 245566677777655445445567788899965 5
Q ss_pred eeEEEecCCcccccccc-eEEecccc
Q 021319 288 LLAYAGDDKNKYQADEG-VFRIYGFE 312 (314)
Q Consensus 288 ~la~~~~d~~~~~~~~~-~~~~~~~~ 312 (314)
+|+++-+-. ++- .-|||-++
T Consensus 202 li~fCHEGp-----w~~Vd~RiW~i~ 222 (386)
T PF14583_consen 202 LIMFCHEGP-----WDLVDQRIWTIN 222 (386)
T ss_dssp EEEEEE-S------TTTSS-SEEEEE
T ss_pred EEEEeccCC-----cceeceEEEEEE
Confidence 556655431 222 35777764
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.71 E-value=8.1 Score=36.85 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=22.4
Q ss_pred ccCcceeeEEeccCCCeEEEEcCCceEEE
Q 021319 147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 175 (314)
...+++..+..+++|..++..+..|-..+
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 34568899999999999988887664433
No 420
>PRK10115 protease 2; Provisional
Probab=92.70 E-value=9.5 Score=36.38 Aligned_cols=235 Identities=10% Similarity=0.003 Sum_probs=110.8
Q ss_pred cEEEEEECCCCCEEEEeeC-CC----cEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-----CcE
Q 021319 22 KVHSVAWNCTGTKLASGSV-DQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTV 91 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~-D~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-----~~v 91 (314)
.+..+.|||||++|+-+-. +| .|++-|+.++. .....+.+- -..++|.+++..++.+.-.+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~---~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN---WYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC---CCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 5778899999998776532 23 56677765431 111112221 14589998766566655432 356
Q ss_pred EEEeCCCCc--eeeeEEecCc-e-EEEEEccCCCEEEEEeC---CCcEEEEEccC--Ce--EeeeeccCcceeeEEeccC
Q 021319 92 RLWDARSGK--CSQQAELSGE-N-INITYKPDGTHIAVGNR---DDELTILDVRK--FK--PIHRRKFGYEVNEIAWNMT 160 (314)
Q Consensus 92 ~iwd~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~---d~~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~ 160 (314)
..+++.++. -......... . +....+.+++++++.+. ++.+.+++... .. ++.....+... .+ .+..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SL-DHYQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EE-EeCC
Confidence 677887762 2222221111 1 23334447777765443 34677888422 22 12111112111 11 1223
Q ss_pred CCeEEEEcCC-ceEEEE--eCCCCCceeeeeec-c-cceEEEEECCCCCEEEEeeCCCeEEE--eeCCCcEEEEEee-ec
Q 021319 161 GEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAH-T-AGCYCIAIDPMGRYFAVGSADSLVSL--WDISEMLCVRTFT-KL 232 (314)
Q Consensus 161 ~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~-~-~~i~~i~~~~~~~~l~t~~~dg~i~v--wd~~~~~~~~~~~-~~ 232 (314)
+..++....+ .+.+++ ++........+..+ . ..+..+.+. .+.++++...+|.-++ ++.... .+..+. ..
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~ 357 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDD 357 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCC
Confidence 3333333321 233333 33321122333344 2 256777776 3345556666775444 454322 233332 11
Q ss_pred ccCeEEEEEc--cCC-cEEEEecC---CceEEEEECCCCC
Q 021319 233 EWPVRTISFS--HTG-DYIASASE---DLFIDISNVHTGR 266 (314)
Q Consensus 233 ~~~v~~~~~s--p~~-~~l~s~s~---d~~v~v~~~~~~~ 266 (314)
...+..+.++ +++ .++++.+. -..+..+|..+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2223333444 443 34444433 2677888887654
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.15 E-value=4.4 Score=34.74 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=57.3
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE---EEEee----ecccCeEEEEEccC----CcEEEEecCC-------
Q 021319 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFT----KLEWPVRTISFSHT----GDYIASASED------- 254 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~----~~~~~v~~~~~sp~----~~~l~s~s~d------- 254 (314)
.++.|+|.|+|+++++ .+.|.|++++ .++.. +..+. ..+.....++++|+ +.+.++-+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4688999999988775 5699999999 33332 22221 12345788999995 3333333321
Q ss_pred -ceEEEEECCCC-------CeE-EEEec----cCccceeEEcCCCCeeEEEecCCc
Q 021319 255 -LFIDISNVHTG-------RTV-HQIPC----RAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 255 -~~v~v~~~~~~-------~~~-~~~~~----~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
..|.-|....+ +.+ ..++. .-.-..++|.|++.+.++.|+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23333333222 111 12222 113467999999988888887654
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=1 Score=43.87 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=90.3
Q ss_pred cEEEEEECCCCCE--EEEeeCCCcEEEeecCCCCCCce-eeEEeecC------CCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 021319 22 KVHSVAWNCTGTK--LASGSVDQTARVWHIEPHGHGKV-KDIELRGH------ADSVDQLCWDPKHADLIATASGDKTVR 92 (314)
Q Consensus 22 ~V~~v~~s~~g~~--l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~D~~v~ 92 (314)
++..+...+|+.. ++..+.+-.|..||+.......- ....+..| .....++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555556677765 33445555888899865332210 11112222 223457788887655667788899998
Q ss_pred EEeCCCCc-eeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeee--eccCcceeeEEeccCCCeEEEE
Q 021319 93 LWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHR--RKFGYEVNEIAWNMTGEMFFLT 167 (314)
Q Consensus 93 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+.-+.... .+..+.+.....+++|+|.|+.+++|...|++.-|-..-. ..++. .+..+.+.++.|-.....+++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 88664332 2233455666778999999999999999999888865432 11111 1124678888887666655543
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=11 Score=35.42 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=86.9
Q ss_pred CcEEEEeCCCCceeeeEE-ecCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEee-ee---ccCcceeeEEeccCCCe
Q 021319 89 KTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RR---KFGYEVNEIAWNMTGEM 163 (314)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 163 (314)
-.|+|++.. |+...... .++..+.+.|+.+. .|++...+|.+.++++....... .. .....+..+.+...|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 457888874 44433332 24478889998665 55566789999999974321111 01 011123222222222
Q ss_pred EEEEcCCceEEEEeCCCC---CceeeeeecccceEEEEECCCCC---EEEEeeCCCeEEEeeCCCcE-EEEEeeecccCe
Q 021319 164 FFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEML-CVRTFTKLEWPV 236 (314)
Q Consensus 164 ~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~---~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v 236 (314)
+++-..+|++....-... +.+........+..|-...++++ .++--..--...++...... ....+......+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 333444555544432111 11111112222223333333322 11111000001222221111 111222223457
Q ss_pred EEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 237 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
..+..||+.++||-=.+.|.+.+-+....+.+-.+.
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 788999999999999999999999887666554443
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.91 E-value=5.5 Score=31.87 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=61.4
Q ss_pred eeEEeccCCCeEEEE-cCCceEEEEeC--CCCC-----ceeeeee----cccceEEEEECCCCCEEEEeeCCCeEEEeeC
Q 021319 153 NEIAWNMTGEMFFLT-TGNGTVEVLTY--PSLR-----PLDTVVA----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (314)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~~g~~~~~~~--~~~~-----~~~~~~~----~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~ 220 (314)
+.++|+.+.+.+... +.+-.+..|++ ++.. .+..+.. .+..+-.++++.+|.+.++.-..++|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 567888776655544 45566766763 3221 1111111 1222345666778998888888999999999
Q ss_pred CCcEEEEEeeecccCeEEEEEc
Q 021319 221 SEMLCVRTFTKLEWPVRTISFS 242 (314)
Q Consensus 221 ~~~~~~~~~~~~~~~v~~~~~s 242 (314)
.+++++++++-..-.++++||-
T Consensus 241 ~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEec
Confidence 9999999998777789999995
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.28 E-value=12 Score=34.34 Aligned_cols=145 Identities=17% Similarity=0.304 Sum_probs=88.7
Q ss_pred ccEEEEEECCCCCE-EEEee--CCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCC---CEEEEEeCCCcEEEE
Q 021319 21 KKVHSVAWNCTGTK-LASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA---DLIATASGDKTVRLW 94 (314)
Q Consensus 21 ~~V~~v~~s~~g~~-l~s~~--~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~~l~s~~~D~~v~iw 94 (314)
.+|+.++|. ||++ ++|.- ..|.++.=| . ..-|.-..|..++|.|.+. .-+++..-.+.|.+|
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd--------s---~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD--------S---KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC--------c---cEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 478999997 6654 55543 233322211 1 2346677899999998631 134456677899999
Q ss_pred eCCCC-----c--eeeeEEecCc----eEEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeeeeccCcceeeEEeccCC
Q 021319 95 DARSG-----K--CSQQAELSGE----NINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNMTG 161 (314)
Q Consensus 95 d~~~~-----~--~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (314)
-+... + +.+..++... .-.+.|+|....|++-.....-.+++++.. .....++....+.+..|..+|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 86522 1 1222233221 224779999888887766655555665432 223345666789999999999
Q ss_pred CeEEEEcCCc-eEEEEe
Q 021319 162 EMFFLTTGNG-TVEVLT 177 (314)
Q Consensus 162 ~~~~~~~~~g-~~~~~~ 177 (314)
+.++++.++. ..++|+
T Consensus 168 ~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CEEEEEeCCeEEEEEec
Confidence 9998887652 334554
No 426
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.25 E-value=7.5 Score=32.12 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=64.8
Q ss_pred EECCCCCEEEEeeCC-----CeEEEeeCCCc-EEEEEeeecccCeEEEEEccCCcEEEEecC------C-----------
Q 021319 198 AIDPMGRYFAVGSAD-----SLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE------D----------- 254 (314)
Q Consensus 198 ~~~~~~~~l~t~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~------d----------- 254 (314)
.|||||++|...-.| |.|=+||.+.. +.+-++..|.-....+.+.+||+.|+.+.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 489999998865333 67999998754 456677777777788999999999987754 1
Q ss_pred -ceEEEEECCCCCeEEEE--e---ccCccceeEEcCCCCeeE
Q 021319 255 -LFIDISNVHTGRTVHQI--P---CRAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 255 -~~v~v~~~~~~~~~~~~--~---~~~~i~~v~~~~~~~~la 290 (314)
-++-+-|..+|.++.+. + ...+|+-++.-++++..+
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 23345566677666543 2 134677778878777654
No 427
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=4.1 Score=36.54 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=50.3
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc-eeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecc
Q 021319 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT 191 (314)
Q Consensus 113 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 191 (314)
.+..++.|..++..+.+|-+.++=.+.+.+-..++.+.+ +.|..+..+. .+++.+ -.
T Consensus 108 ~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss---------------------~~ 165 (741)
T KOG4460|consen 108 QVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS---------------------TS 165 (741)
T ss_pred EEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC---------------------Cc
Confidence 466788999999998888666554444333333332222 2222222111 111111 01
Q ss_pred cceEEEEECCCC---CEEEEeeCCCeEEEeeCCCcEE
Q 021319 192 AGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLC 225 (314)
Q Consensus 192 ~~i~~i~~~~~~---~~l~t~~~dg~i~vwd~~~~~~ 225 (314)
-.+...+|+|+. ..|..-..|..||+||+.....
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 123456788765 5677777888999999876543
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=6.6 Score=30.86 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCEEEEEeC--CCcEEEEeCCCCceeeeEEecC-ceEEEEEccCCCEE-EEEeCCCcEEEEEccCCeEeeeeccCcceee
Q 021319 79 ADLIATASG--DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNE 154 (314)
Q Consensus 79 ~~~l~s~~~--D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 154 (314)
+.++.|.+. ...|++||+.+++.+...++.. ....=....-+..+ ...-.++.-..+|..+.+.+.+.....+-..
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWg 135 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWG 135 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCccee
Confidence 356666554 4678999999998877665542 11111111123333 3344566677788877766655443333333
Q ss_pred EEeccCCCeEEEEcCCceEEEEeCCC
Q 021319 155 IAWNMTGEMFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 155 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (314)
+ ..++..++.+.+..++..-+-.+
T Consensus 136 L--t~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 136 L--TSDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred e--ecCCcceEeeCCceEEEecCHHH
Confidence 3 34566666666666666555433
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.60 E-value=1.3 Score=35.37 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=44.2
Q ss_pred EEccCCcEEEEecCCceEEEEECCCCCeEEEE---------------eccCccceeEEcCCCCeeEEEecCCcccc
Q 021319 240 SFSHTGDYIASASEDLFIDISNVHTGRTVHQI---------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300 (314)
Q Consensus 240 ~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~---------------~~~~~i~~v~~~~~~~~la~~~~d~~~~~ 300 (314)
.+..++.+|+.-+.+|.+++||+.+++.+..- .....|..+..+.+|.-+++-+. +..|.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~ 91 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYS 91 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEE
Confidence 35578999999999999999999998765432 12245788899988877776653 44453
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.44 E-value=7.4 Score=30.70 Aligned_cols=108 Identities=20% Similarity=0.311 Sum_probs=64.2
Q ss_pred CEEEEeeCCCeEEEeeCC--CcEEEEEeeecccCeEEEEEccCCcEEEEecCC---c---eEEEEE---CC--CCCeE--
Q 021319 204 RYFAVGSADSLVSLWDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASASED---L---FIDISN---VH--TGRTV-- 268 (314)
Q Consensus 204 ~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---~---~v~v~~---~~--~~~~~-- 268 (314)
+.|..+.....|.+|++. ....+.+|... ..|..+.++..|+||+|-=++ . .+++|- .. ...++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444667789999987 33445566544 578999999999999976322 2 555552 11 11111
Q ss_pred ---------------------EEEeccCccceeEEcC-CCCeeEEEecCCcccccccceE-----Eecccc
Q 021319 269 ---------------------HQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVF-----RIYGFE 312 (314)
Q Consensus 269 ---------------------~~~~~~~~i~~v~~~~-~~~~la~~~~d~~~~~~~~~~~-----~~~~~~ 312 (314)
-+++.+.+..+++=.| +|++|+..++--.+|+..-+++ ++-|||
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEech
Confidence 1233445677888888 4666655444445555444444 555554
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.39 E-value=3.6 Score=32.40 Aligned_cols=62 Identities=8% Similarity=0.142 Sum_probs=45.0
Q ss_pred cEEEEecCCceEEEEECC--CCCeEEEEeccCccceeEEcCCCCeeEEEecCCcccccccceEEec
Q 021319 246 DYIASASEDLFIDISNVH--TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 309 (314)
Q Consensus 246 ~~l~s~s~d~~v~v~~~~--~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~~~~~~~ 309 (314)
+.|+.+.....|.+|++. ...++..++.-+.|..++.+..|.+|+|-=++.+.-.. ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~--~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPV--DFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccc--eEEEEE
Confidence 455455667779999987 45677778878899999999999999887654432211 167776
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.29 E-value=1.5 Score=24.06 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEE
Q 021319 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (314)
Q Consensus 77 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 116 (314)
++..++++.-.+++|.++|..+++.............+.+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4444666666789999999988877776665444444443
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.22 E-value=3.6 Score=38.69 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCceEEEEeCCC-------C-------------CceeeeeecccceEEEEEC--CCCCEEEEeeCCCeEEE
Q 021319 160 TGEMFFLTTGNGTVEVLTYPS-------L-------------RPLDTVVAHTAGCYCIAID--PMGRYFAVGSADSLVSL 217 (314)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l~t~~~dg~i~v 217 (314)
..+.++++.++|.+.+|.... . +|...+ .-+..++.++++ ...+++|+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 446788889999999995321 0 111111 123468899998 88889999988888888
Q ss_pred eeCCCc--EE-EEEeeecccCeEEEEEccCC------cEEEEecCCceEEEEEC
Q 021319 218 WDISEM--LC-VRTFTKLEWPVRTISFSHTG------DYIASASEDLFIDISNV 262 (314)
Q Consensus 218 wd~~~~--~~-~~~~~~~~~~v~~~~~sp~~------~~l~s~s~d~~v~v~~~ 262 (314)
|-.... +. ...-..+...|.+|+|-++. ..|++++-.|.+.+|+.
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 866432 11 11111255689999997654 27888999999988877
No 434
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.17 E-value=1.6 Score=23.66 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=19.6
Q ss_pred eeecccCeEEEEEccCCcEEEEec-CC--ceEEEE
Q 021319 229 FTKLEWPVRTISFSHTGDYIASAS-ED--LFIDIS 260 (314)
Q Consensus 229 ~~~~~~~v~~~~~sp~~~~l~s~s-~d--~~v~v~ 260 (314)
+......-...+|||||++|+-.+ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334445567788999998887554 44 555554
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.00 E-value=2.5 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=43.5
Q ss_pred CCCCEEEEeeCCCcEEEeecCCCC-CC-ceeeEEeec--------------------CCCCEEEEEEcC---CCCCEEEE
Q 021319 30 CTGTKLASGSVDQTARVWHIEPHG-HG-KVKDIELRG--------------------HADSVDQLCWDP---KHADLIAT 84 (314)
Q Consensus 30 ~~g~~l~s~~~D~~v~iw~~~~~~-~~-~~~~~~~~~--------------------h~~~v~~l~~~~---~~~~~l~s 84 (314)
++...++.+..||.+-........ .+ ......... -...+..+++++ .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466778888889988877665411 11 111100000 112344555554 24578999
Q ss_pred EeCCCcEEEEeCCCCceeeeEE
Q 021319 85 ASGDKTVRLWDARSGKCSQQAE 106 (314)
Q Consensus 85 ~~~D~~v~iwd~~~~~~~~~~~ 106 (314)
-+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866543
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.98 E-value=14 Score=33.21 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=87.9
Q ss_pred CCCCEE-EEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCC-------CEEEEEeCCCcEEEEEccCCe-Eeee--
Q 021319 77 KHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-------THIAVGNRDDELTILDVRKFK-PIHR-- 145 (314)
Q Consensus 77 ~~~~~l-~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~d~~i~i~d~~~~~-~~~~-- 145 (314)
++.++| ..|+....+.--|+..|+++....++... -+.|.|.. ..-++|-.+..+.-.|+|-.. .+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 334444 45555666777788888887777665554 45555542 233456666666666766422 1111
Q ss_pred ---eccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCC
Q 021319 146 ---RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (314)
Q Consensus 146 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~ 221 (314)
+.....-++ .......++++++..|.+++|+.-..+....+++.+.+|..+..+.+|+++.+.| ...+.+-|++
T Consensus 556 sKdY~tKn~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccc-cccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111111111 1222345788899999999999766665556677788899999999999866554 4457777763
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=89.95 E-value=15 Score=33.40 Aligned_cols=140 Identities=9% Similarity=-0.070 Sum_probs=65.1
Q ss_pred CCEEEEEeCC-----CcEEEEeCCCCceeeeEEecCce--EEEEEccCCCEEEEEeCCC--cEEEEEccCCeEeeeeccC
Q 021319 79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFG 149 (314)
Q Consensus 79 ~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~ 149 (314)
+.+++.||.+ .++..||..++.......+.... ..+ ..-++...++|+.++ .+..||+.+.+........
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 3455667654 24667888876654433222111 112 224677777887543 4777887654432221111
Q ss_pred cce-eeEEeccCCCeEEEEcCCc---eEEEEeCCCCCc--eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCc
Q 021319 150 YEV-NEIAWNMTGEMFFLTTGNG---TVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (314)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~ 223 (314)
.+. ....-..++..+++|+.++ .+..|+....+- ...+.........+ .-+++..+.|+ .+.+||.++.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCC
Confidence 111 1122234566777766443 345555432210 00000000111122 23466666664 4678887654
Q ss_pred E
Q 021319 224 L 224 (314)
Q Consensus 224 ~ 224 (314)
+
T Consensus 426 ~ 426 (480)
T PHA02790 426 T 426 (480)
T ss_pred c
Confidence 3
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.57 E-value=0.052 Score=47.39 Aligned_cols=146 Identities=15% Similarity=0.255 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEE-EEeCCCcEEEEEccCCeEeeeecc
Q 021319 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKF 148 (314)
Q Consensus 70 ~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~ 148 (314)
....|-|.+.+ ++.++.+-.+..||-. ++........+..+.++|.-++..++ .+...+.+.+||+.+..... .+.
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES 114 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc
Confidence 34567777766 5567777888888864 34333444455666788887776655 56677889999986532111 111
Q ss_pred C--cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 149 G--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 149 ~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
+ .+..-..|++.....+.+...|++.++.....+.....-.|...++++++.+.+.. +.++.|..+.+-.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~ 186 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTT 186 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhh
Confidence 1 12233678888888888989999999998877765444448889999999987654 4455555444433
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.47 E-value=3.1 Score=33.22 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=45.3
Q ss_pred ECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe-------e-------ecccCeEEEEEccCCcEEEEecCCceEEEEECC
Q 021319 199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------T-------KLEWPVRTISFSHTGDYIASASEDLFIDISNVH 263 (314)
Q Consensus 199 ~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~ 263 (314)
+...+.++.+-+.+|.+++||+.+.+++..- . .....|..+.++.+|.-+++-+. |..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 4456888999999999999999988764321 1 13345777888888877776553 566777654
No 440
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.19 E-value=15 Score=32.50 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=83.6
Q ss_pred CCEEEEeeCCCcEEEeecCCCCCCce-eeEEeecCCCCEEEEEEcC---CCCCEEEEEeCCCcEEEEeCCC--Cc-----
Q 021319 32 GTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDP---KHADLIATASGDKTVRLWDARS--GK----- 100 (314)
Q Consensus 32 g~~l~s~~~D~~v~iw~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~D~~v~iwd~~~--~~----- 100 (314)
.+.|+.||..|.+|||+......... .-++ ..-+.+|.++..-. ......++.---..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 46899999999999998754332111 1111 12346777765431 1122222334456666676521 11
Q ss_pred -e----eeeEEecCceEEEEEcc----C-CCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCC
Q 021319 101 -C----SQQAELSGENINITYKP----D-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (314)
Q Consensus 101 -~----~~~~~~~~~~~~~~~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
. .....+.....+++.-| . ..++.+-+.||.+.+++-+.....+....-.-...+.+.+.-+.++++...
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 1 11122233334444433 2 357778899999999997664432222222223456788888999999988
Q ss_pred ceEEEEeC
Q 021319 171 GTVEVLTY 178 (314)
Q Consensus 171 g~~~~~~~ 178 (314)
..+..|.+
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88888875
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.18 E-value=0.033 Score=48.52 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=96.8
Q ss_pred eEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEE-EeeCCCeEEEeeCCCcEEEEEeeec
Q 021319 154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKL 232 (314)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~ 232 (314)
...|.+.+..++.++.+-.+..||-....... ..-++....++|+.++..++ .+-..+.+.+||+.+..-.+.-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 34566777677777777777666643322111 11233455678888887654 5666789999999754322111122
Q ss_pred ccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEe-ccCccceeEEcCCCCeeEEEecCCcccc--cccceEEec
Q 021319 233 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ--ADEGVFRIY 309 (314)
Q Consensus 233 ~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~la~~~~d~~~~~--~~~~~~~~~ 309 (314)
...-.-+.|++.+..++.+--.+.+.+++..+.+.+-... +-.++.+++|.+.+.. +.++.|..+=+ .++.+++.|
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~qegeta~lt 195 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTTQEGETASLT 195 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhhhccceeeee
Confidence 2222226799999999999888999999998877665544 5567999999996644 45665543322 445555554
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.93 E-value=17 Score=32.63 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=60.4
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE--EEEee----e-cccCeEEEEEccCC------c--EEEEec----
Q 021319 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT----K-LEWPVRTISFSHTG------D--YIASAS---- 252 (314)
Q Consensus 192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~----~-~~~~v~~~~~sp~~------~--~l~s~s---- 252 (314)
...+.|+|.|+|++|++--..|.|++++..+... +..+. . .......|+++|+- . |+....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4578999999998887665469999998654321 21111 1 23457889999985 1 333321
Q ss_pred ----CCceEEEEECCC--C-----CeE-EEEeccC--ccceeEEcCCCCeeEEEecCC
Q 021319 253 ----EDLFIDISNVHT--G-----RTV-HQIPCRA--AMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 253 ----~d~~v~v~~~~~--~-----~~~-~~~~~~~--~i~~v~~~~~~~~la~~~~d~ 296 (314)
....|.-+.+.. . +.+ ..++... .-..++|.|++.++++.|+-+
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 122343343321 1 111 1121111 145788999999888887653
No 443
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=13 Score=30.88 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCeEe-eeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC-CCceee--eeecccceE
Q 021319 120 GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDT--VVAHTAGCY 195 (314)
Q Consensus 120 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~--~~~~~~~i~ 195 (314)
++++..+..+..++++|+.++..- ..-.....-..-.|.-.|++..++.-+.-+.+++... ..|.-. +........
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 567888888899999998775421 1111222233445566788888887444445566533 333211 111222234
Q ss_pred EEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeeccc--CeEEEEEccCCcEEEEecCCceEEEEECCCCC
Q 021319 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGR 266 (314)
Q Consensus 196 ~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~ 266 (314)
.+++| |++-..+..|+.+.+-|+........+...++ .+.++..+++-.+++...+- +.+-|+...+
T Consensus 176 ~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~s 244 (370)
T COG5276 176 DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGPS 244 (370)
T ss_pred eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCCC
Confidence 56665 67777788899999999987654333322222 46777777776666655443 4444554433
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.41 E-value=5.8 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.2
Q ss_pred cceEEEEECCCC------CEEEEeeCCCeEEEeeCCC
Q 021319 192 AGCYCIAIDPMG------RYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 192 ~~i~~i~~~~~~------~~l~t~~~dg~i~vwd~~~ 222 (314)
..+..++|||.| -+||+-..++.+.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368899999964 2688999999999998653
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.25 E-value=5 Score=30.67 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.6
Q ss_pred CEEEEEEcCCC-----CCEEEEEeCCCcEEEEeCC
Q 021319 68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 68 ~v~~l~~~~~~-----~~~l~s~~~D~~v~iwd~~ 97 (314)
.+..++|+|.+ .-+|+....++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67788999854 2367777888888888765
No 446
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.10 E-value=2.6 Score=22.80 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=18.1
Q ss_pred ccceEEEEECCCCCEEE-EeeCC--CeEEEe
Q 021319 191 TAGCYCIAIDPMGRYFA-VGSAD--SLVSLW 218 (314)
Q Consensus 191 ~~~i~~i~~~~~~~~l~-t~~~d--g~i~vw 218 (314)
...-....|+|||+.|+ ++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34566788999998876 44555 555555
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.96 E-value=9.2 Score=33.79 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=61.9
Q ss_pred ecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEE----EEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV----RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 189 ~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
...++|.+|.|++|++.+|+--.+..|.+++....... ++.+.-...|....|+.+ .-+|-.+..| +.++.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 34568999999999999999999999999987332211 122222334777778765 4444444443 44444321
Q ss_pred -CCeEEEE-eccCccceeEEcCCCCeeEEE
Q 021319 265 -GRTVHQI-PCRAAMNSVEWNPKYNLLAYA 292 (314)
Q Consensus 265 -~~~~~~~-~~~~~i~~v~~~~~~~~la~~ 292 (314)
.+.++-. .+...|+--.|.|+.+.+.-+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 1122221 234568888888876654333
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.75 E-value=11 Score=35.64 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=69.7
Q ss_pred cCCCEEEEEeCCCcEEEEEccC-------C-------------eEeeeeccCcceeeEEec--cCCCeEEEEcCCceEEE
Q 021319 118 PDGTHIAVGNRDDELTILDVRK-------F-------------KPIHRRKFGYEVNEIAWN--MTGEMFFLTTGNGTVEV 175 (314)
Q Consensus 118 ~~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 175 (314)
-....|+++..||.+.+|..+. . +|......+.+.+.++++ ....+++++.....|.+
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3456788889999999996531 1 122333445567888888 77788888888888888
Q ss_pred EeCCCC--C-ceeeeeecccceEEEEECCCC-----C-EEEEeeCCCeEEEeeC
Q 021319 176 LTYPSL--R-PLDTVVAHTAGCYCIAIDPMG-----R-YFAVGSADSLVSLWDI 220 (314)
Q Consensus 176 ~~~~~~--~-~~~~~~~~~~~i~~i~~~~~~-----~-~l~t~~~dg~i~vwd~ 220 (314)
+-+... + ....-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765431 1 111112356678999986543 2 6788889999888877
No 449
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.68 E-value=34 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.0
Q ss_pred EEEEEccCCcEEEEecCC
Q 021319 237 RTISFSHTGDYIASASED 254 (314)
Q Consensus 237 ~~~~~sp~~~~l~s~s~d 254 (314)
.+|+++|+|...++-+..
T Consensus 596 r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDG 613 (1899)
T ss_pred hceeecCCceEEEEeccc
Confidence 678899988776655543
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=87.50 E-value=17 Score=31.14 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=119.3
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeE-EeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~ 98 (314)
...+++|.|..+.+-++.|. ++. ||.....+..+.... .+.....++.++.+.+. +.++. +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~--~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD--EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC--cEEEe-CCCceEEE-ECCC
Confidence 55789999985555565554 554 454433332332211 11112234667777543 33433 34444322 1222
Q ss_pred CceeeeEE----ecCceEEEEEccCCCEEEEEeCCCcEEEE-Ec-cCCeEeeeeccCcceeeEEeccCCCeEEEEcCCce
Q 021319 99 GKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTIL-DV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172 (314)
Q Consensus 99 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~-d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 172 (314)
|+--.... .......+.....+..++++ ..+.+..- |. ++.+.+..-. ...+..+...+++..+ +....|.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v-~~g~~G~ 194 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYV-AVSSRGN 194 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEE-EEeCCce
Confidence 22111111 11122222222222233333 33332221 21 2222222111 2346677777776544 4444454
Q ss_pred EEEEeCCCCCceeee-eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeee----cccCeEEEEEccCCcE
Q 021319 173 VEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDY 247 (314)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~ 247 (314)
+..-.....+.-... ..-...++.+.+.++++.++++ ..|.+++=..+.+..-+.... ....+.++.+.|++..
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 433211111111111 1223467899999999877765 456654322333322111111 1235778899998876
Q ss_pred EEEecCCceEEEEECCCCCeEEEEec----cCccceeEEcCCCCeeEEEecCCc
Q 021319 248 IASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~~~----~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
++ ++.+|.+... ...|+.-...+. ....+.+.|..++..+|. |..+.
T Consensus 274 ~~-~G~~G~v~~S-~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~ 324 (334)
T PRK13684 274 WA-GGGNGTLLVS-KDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGV 324 (334)
T ss_pred EE-EcCCCeEEEe-CCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCce
Confidence 65 5556655433 334443333221 124677888777777664 43443
No 451
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.75 E-value=17 Score=30.18 Aligned_cols=182 Identities=14% Similarity=0.187 Sum_probs=100.7
Q ss_pred EEEEccCCC-EEEEEeCCCc-EEEEEccCCeEeeeeccC---cceeeEEeccCCCeEEEEcCC-----ceEEEEeCC-CC
Q 021319 113 NITYKPDGT-HIAVGNRDDE-LTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGN-----GTVEVLTYP-SL 181 (314)
Q Consensus 113 ~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~-~~ 181 (314)
.++++|... -++.+-.-|+ ..++|....+........ .---.-.|+++|.++...-.+ |.+-+|+.. ..
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 355555433 3444444444 456676554433221110 011123588999988877543 788889875 34
Q ss_pred CceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEe-e-------CCCcEEEEE---------eeec-------ccCeE
Q 021319 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW-D-------ISEMLCVRT---------FTKL-------EWPVR 237 (314)
Q Consensus 182 ~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vw-d-------~~~~~~~~~---------~~~~-------~~~v~ 237 (314)
+.+.++..|.-..-.+.+.+||+.++.+ +|.|... | +++++.-.. +++| ...+.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 5566777888888899999999998876 4446555 2 222221111 1122 23477
Q ss_pred EEEEccCCcEEEEecC-----CceEEEEECCCCCeEEEEecc--------CccceeEEcCCCCeeEEEecCC
Q 021319 238 TISFSHTGDYIASASE-----DLFIDISNVHTGRTVHQIPCR--------AAMNSVEWNPKYNLLAYAGDDK 296 (314)
Q Consensus 238 ~~~~sp~~~~l~s~s~-----d~~v~v~~~~~~~~~~~~~~~--------~~i~~v~~~~~~~~la~~~~d~ 296 (314)
.++..+||..++-.=- |.---|=....|+.+.-+... .=|-+|+-|.+..+++..+--+
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G 301 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG 301 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence 7888888887764421 222222233345555444321 1255777776666665555443
No 452
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.44 E-value=3.6 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=23.9
Q ss_pred EEEecCCceEEEEECCCCCeEEEEeccCc
Q 021319 248 IASASEDLFIDISNVHTGRTVHQIPCRAA 276 (314)
Q Consensus 248 l~s~s~d~~v~v~~~~~~~~~~~~~~~~~ 276 (314)
+..++.||.+.-.|..+|+.+..+.....
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 45569999999999999999998875443
No 453
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.85 E-value=2.4 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.3
Q ss_pred EEEEecCCceEEEEECCCCCeEEEE
Q 021319 247 YIASASEDLFIDISNVHTGRTVHQI 271 (314)
Q Consensus 247 ~l~s~s~d~~v~v~~~~~~~~~~~~ 271 (314)
.++.++.++.+...|..+|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777889999999999999987654
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=21 Score=31.69 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=69.0
Q ss_pred cceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeee----eecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEE
Q 021319 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV----VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (314)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~ 225 (314)
.++.++.|+++.+.+++.-.+..+.++.....++.... ...+..|....|+.+ +-+|.-...| +.+|.+...+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence 47889999999999999999999999988554443222 223445777888765 5566565454 88888765543
Q ss_pred -EEEeeecccCeEEEEEccCCcEEEEe
Q 021319 226 -VRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 226 -~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
++..+.+...|.--.|.|+.+.+.-+
T Consensus 145 slRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhcccCccEEEEccccceEeee
Confidence 34445566677778888887754433
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.01 E-value=25 Score=30.60 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=51.0
Q ss_pred ccEEEEEECCCCCEEEEee-----------CCC-cEEEeecCCCCCCceee-EEeecCCCCEEEEEEcCCCCCEEEEEeC
Q 021319 21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG 87 (314)
Q Consensus 21 ~~V~~v~~s~~g~~l~s~~-----------~D~-~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 87 (314)
.....++|.++|.++++-. ..+ .|.+++-.... +.... ..+.........+++.+++ ++++ ..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-G~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-GKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-CCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 3567889999999887753 122 56665432211 12111 1222223345778887653 5544 34
Q ss_pred CCcEEEEeCCCC-----ceeeeEE-ec-------CceEEEEEccCCCEEEEEe
Q 021319 88 DKTVRLWDARSG-----KCSQQAE-LS-------GENINITYKPDGTHIAVGN 127 (314)
Q Consensus 88 D~~v~iwd~~~~-----~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~ 127 (314)
..-.++.|.... +...... +. .....+.+.|||.+.++-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 433334454321 1111111 11 1133588899998766544
No 456
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.70 E-value=40 Score=32.66 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=81.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEEecCce-------------EEEEEcc--CCCEEEEEeC----------CCcEEE
Q 021319 80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI 134 (314)
Q Consensus 80 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~i 134 (314)
..|+.++.|+.+.-.|..+|+....+...+.. ....-.| .+..+++|+. +|.|.-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 46778889999999999999876543222111 0011111 1345666643 578999
Q ss_pred EEccCCeEeeeeccCcc----------e---------eeEEeccCCCeEEEEcC------------------CceEEEEe
Q 021319 135 LDVRKFKPIHRRKFGYE----------V---------NEIAWNMTGEMFFLTTG------------------NGTVEVLT 177 (314)
Q Consensus 135 ~d~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~------------------~g~~~~~~ 177 (314)
+|.++.+.+.+.....+ . ...++.+....++...+ .+.+...+
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 99999888765432110 0 11122233333333222 23444445
Q ss_pred CCCCCceeeeee-cc--------cceEEEEECC-CCC---EEEEeeCCCeEEEeeCCCcEEEEE
Q 021319 178 YPSLRPLDTVVA-HT--------AGCYCIAIDP-MGR---YFAVGSADSLVSLWDISEMLCVRT 228 (314)
Q Consensus 178 ~~~~~~~~~~~~-~~--------~~i~~i~~~~-~~~---~l~t~~~dg~i~vwd~~~~~~~~~ 228 (314)
..+.+..-.++. |. ....-+.+.. +|+ .++.++++|.+.+.|-++++.+..
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 555544433322 11 1122223332 553 788999999999999999877643
No 457
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.49 E-value=38 Score=32.24 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=30.4
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG 55 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~ 55 (314)
...+++++-+|-|+-++.+..||++++|+..++.++
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs 49 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS 49 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh
Confidence 446888888999999999999999999998765543
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.97 E-value=16 Score=32.43 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=83.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeecc---Cc----cee-eEEeccCCCeEEEEcCCceEEEEeC--CCCCc
Q 021319 114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY----EVN-EIAWNMTGEMFFLTTGNGTVEVLTY--PSLRP 183 (314)
Q Consensus 114 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~----~~~-~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~ 183 (314)
+-..|||+.+.+-+. ..+.++++.+.....+... +. ++. .+..-..+..+++...||-+.-|.. ++..+
T Consensus 226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p 304 (733)
T COG4590 226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP 304 (733)
T ss_pred hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC
Confidence 457799999987665 6788888765432222111 11 111 1111234667788889998877743 12211
Q ss_pred ----eeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEE
Q 021319 184 ----LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 259 (314)
Q Consensus 184 ----~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v 259 (314)
++.+.-...++..+.-..+.+.+++-+.+|.+.++.....+.+. ++..-....-+++||.+.+|++- ..|.+++
T Consensus 305 ~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~ 382 (733)
T COG4590 305 HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE-DQGKIRL 382 (733)
T ss_pred cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee-cCCceEE
Confidence 11111122334444444455678888888888888754433322 22222356778999999999753 2356777
Q ss_pred EECCC
Q 021319 260 SNVHT 264 (314)
Q Consensus 260 ~~~~~ 264 (314)
+.+..
T Consensus 383 ~~l~N 387 (733)
T COG4590 383 AQLEN 387 (733)
T ss_pred EEecC
Confidence 77654
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.83 E-value=31 Score=30.66 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=119.1
Q ss_pred cccEEEEEECC----CCCEEEEeeCCCcEEEeecCCCCCC----ceee-EEeecCC--CCEEEEEEcCCC----CCEEEE
Q 021319 20 KKKVHSVAWNC----TGTKLASGSVDQTARVWHIEPHGHG----KVKD-IELRGHA--DSVDQLCWDPKH----ADLIAT 84 (314)
Q Consensus 20 ~~~V~~v~~s~----~g~~l~s~~~D~~v~iw~~~~~~~~----~~~~-~~~~~h~--~~v~~l~~~~~~----~~~l~s 84 (314)
+.+|..|+.-. .....++.-.-+.+.||.+...... .... ...-.|. .....+++-|-+ .+.|..
T Consensus 71 ~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV 150 (418)
T PF14727_consen 71 KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV 150 (418)
T ss_pred CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE
Confidence 35677776432 2334555566678888887432211 0011 1111232 223344443332 367888
Q ss_pred EeCCCcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEccCC-----------------------e
Q 021319 85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-----------------------K 141 (314)
Q Consensus 85 ~~~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------------~ 141 (314)
-+.||.+.+++-+.-......+..--+-.+.|.+....+++++.+-.+..|..... .
T Consensus 151 QS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~ 230 (418)
T PF14727_consen 151 QSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLN 230 (418)
T ss_pred EecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccccccccc
Confidence 99999999999764433232222222335778888888888888777777753210 0
Q ss_pred EeeeeccCcceeeE---EeccCCCeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEE-------ECCC-CCEEEEee
Q 021319 142 PIHRRKFGYEVNEI---AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA-------IDPM-GRYFAVGS 210 (314)
Q Consensus 142 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~-------~~~~-~~~l~t~~ 210 (314)
+..++..+.++..+ ..+. ....++.....++..++... .+...........|+. ..++ +..+++++
T Consensus 231 ~dWs~nlGE~~l~i~v~~~~~-~~~~IvvLger~Lf~l~~~G--~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t 307 (418)
T PF14727_consen 231 PDWSFNLGEQALDIQVVRFSS-SESDIVVLGERSLFCLKDNG--SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT 307 (418)
T ss_pred ceeEEECCceeEEEEEEEcCC-CCceEEEEecceEEEEcCCC--eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe
Confidence 11112222222222 2211 11222222233333333321 1111111222223322 1222 22588899
Q ss_pred CCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCC
Q 021319 211 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 264 (314)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~ 264 (314)
.++++.||.-.+..--..+....-.+.-..|..-...|++-+.+|.+.+.-+.|
T Consensus 308 ~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 308 HTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred cCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 999999997443322222211111233333444567888999999999887766
No 460
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.29 E-value=1.2 Score=42.35 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=43.2
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcee
Q 021319 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (314)
Q Consensus 23 V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 102 (314)
|..+.|-++.-++..+-.++.+++-+.++.. .. -+.+|+..+.++++-..+-..+.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~-l~rsHs~~~~d~a~~~~g~~~l~~------------------ 242 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RS-LFRSHSQRVTDMAFFAEGVLKLAS------------------ 242 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHH----HH-HHHhcCCCcccHHHHhhchhhhee------------------
Confidence 3333344455566666677777775554311 01 234576666665554332111111
Q ss_pred eeEEecCceEEEEEccCCCEEEEEeCCCcEEEEEc
Q 021319 103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (314)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (314)
.+|||+.++....||.+..|.+
T Consensus 243 -------------lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 -------------LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred -------------eCCCCcEEEEeecCCccceeee
Confidence 5677777777777777777764
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.07 E-value=7.8 Score=34.84 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=50.8
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEe-----ecCCC---CCCceeeEE--------eecCCCCEEEEEEcCCC--CCEEE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVW-----HIEPH---GHGKVKDIE--------LRGHADSVDQLCWDPKH--ADLIA 83 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw-----~~~~~---~~~~~~~~~--------~~~h~~~v~~l~~~~~~--~~~l~ 83 (314)
.|..|..++.|..++-.|.+|.+.++ .-+.. +...+.+.. +....-.+..++|+|+. ...+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 68888999999999999999987764 22110 101111111 11122246678999975 45666
Q ss_pred EEeCCCcEEEEeCCCC
Q 021319 84 TASGDKTVRLWDARSG 99 (314)
Q Consensus 84 s~~~D~~v~iwd~~~~ 99 (314)
.-+.|..+|+||....
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 7788999999998654
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.66 E-value=35 Score=34.45 Aligned_cols=136 Identities=25% Similarity=0.267 Sum_probs=76.0
Q ss_pred eCCCcEEEEeCCCCceeeeE-EecCceEEEE--------EccCCCEEEEEeCCCcEEEEEccCCe-------Ee--eee-
Q 021319 86 SGDKTVRLWDARSGKCSQQA-ELSGENINIT--------YKPDGTHIAVGNRDDELTILDVRKFK-------PI--HRR- 146 (314)
Q Consensus 86 ~~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~--~~~- 146 (314)
+.|..+.+|+..++.-.... .+...+.++. |.|.=+++.+-..--.+.++-+.-.+ .. ..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999874322222 2223333322 33333344433333444444322110 00 111
Q ss_pred ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCC------CCc----------------eeeee-ecccceEEEEECCCC
Q 021319 147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS------LRP----------------LDTVV-AHTAGCYCIAIDPMG 203 (314)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~----------------~~~~~-~~~~~i~~i~~~~~~ 203 (314)
..+..+.++....+|..|++|-.+ .++-+.+.. .++ +..+. .+..+|..+.++...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 124568888877777777665544 544332211 100 11122 355689999999999
Q ss_pred CEEEEeeCCCeEEEeeCCC
Q 021319 204 RYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 204 ~~l~t~~~dg~i~vwd~~~ 222 (314)
..+.+-+..|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 9999999999999999965
No 463
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.20 E-value=51 Score=31.99 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=48.0
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeee-ccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCCCceeeeee
Q 021319 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (314)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 189 (314)
+.++....-+..++....||+|.++|-.+.+.+... ..+.....+. ....-| ..+.
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~---------s~~~~G-------------f~fp- 318 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVT---------SLFQAG-------------FHFP- 318 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccc---------cccccc-------------cccc-
Confidence 445555566778888889999999988776554432 0000000000 000000 0011
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEE
Q 021319 190 HTAGCYCIAIDPMGRYFAVGSADSLVS 216 (314)
Q Consensus 190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~ 216 (314)
....+..++|||++..++.-..+|.+.
T Consensus 319 ~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 319 CIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cCCCCceEEECcccceEEEEecCCCce
Confidence 111466789999999999999998866
No 464
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.67 E-value=27 Score=28.43 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=63.2
Q ss_pred EEECCCCCEEEEeeCC-C--eEEEeeCCC----cEEE---EEeeecccCeEEEEEccCCcEEEEecCCce-EEEEECCC-
Q 021319 197 IAIDPMGRYFAVGSAD-S--LVSLWDISE----MLCV---RTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHT- 264 (314)
Q Consensus 197 i~~~~~~~~l~t~~~d-g--~i~vwd~~~----~~~~---~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~-v~v~~~~~- 264 (314)
-++-+||+++.+|+.. | .+++++... .... ..+....|- .+...=|||+.|+.|+.+.. ...|....
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECCCCCEEEEeCcCCCcccccCCccC
Confidence 3577899999988763 2 488887543 1111 112222232 22334489999999888743 33333211
Q ss_pred CCeEEEE--ec----cCc--cc-eeEEcCCCCeeEEEecCCcccccccceE
Q 021319 265 GRTVHQI--PC----RAA--MN-SVEWNPKYNLLAYAGDDKNKYQADEGVF 306 (314)
Q Consensus 265 ~~~~~~~--~~----~~~--i~-~v~~~~~~~~la~~~~d~~~~~~~~~~~ 306 (314)
......+ .. ... .. -+...|+|++|+.+..+..+|....+++
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v 201 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTV 201 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeE
Confidence 1111111 11 011 11 5677799999999999999998887755
No 465
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.59 E-value=38 Score=30.08 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=52.8
Q ss_pred eecccccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCCC-EEEEEEcCC-----------------
Q 021319 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPK----------------- 77 (314)
Q Consensus 16 ~~gH~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~----------------- 77 (314)
+...+-.+.+++.+|.+++.++.+.=|.|.++|+....- . .-.+|.-++ +.-+.....
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---v-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---V-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---h-hhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 445566799999999999999988889999999865321 1 011222111 000000000
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeEEe
Q 021319 78 HADLIATASGDKTVRLWDARSGKCSQQAEL 107 (314)
Q Consensus 78 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~ 107 (314)
..-+++-+..-|.|.||.++.|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 001344556678899999998877665543
No 466
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=78.55 E-value=61 Score=30.63 Aligned_cols=155 Identities=13% Similarity=0.148 Sum_probs=81.1
Q ss_pred cccEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCCceeeEEeecCCC-CEEEEEEcC-----CCCCEEEEEeC-C---C
Q 021319 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDP-----KHADLIATASG-D---K 89 (314)
Q Consensus 20 ~~~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~-----~~~~~l~s~~~-D---~ 89 (314)
.+.|-.|.|.++++.++..-.+|.|++|+.+......+....+ .++. .++. +|.+ ++.+++++-+. + -
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 5688899999999999999999999999983322222211111 1111 1222 2211 12344443333 1 3
Q ss_pred cEEEEeC--CCCceeeeE--Eec---CceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcce-----eeEEe
Q 021319 90 TVRLWDA--RSGKCSQQA--ELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-----NEIAW 157 (314)
Q Consensus 90 ~v~iwd~--~~~~~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~ 157 (314)
+.|++.+ ....+.... ..+ .....+++. +|++... .+++|.+|++...+..+.+..+.-+ ..+.+
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 4567777 222221110 011 112234443 5554444 6779999999988877666544211 22233
Q ss_pred ccCCCeEEEEcCCceEEEEeCC
Q 021319 158 NMTGEMFFLTTGNGTVEVLTYP 179 (314)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~ 179 (314)
.+-...-+.-+.++.+++.++.
T Consensus 284 ~~~s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 284 KPPSPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred ecCCCCeEEEEcCCEEEEEeeh
Confidence 3333333334456678887753
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=78.31 E-value=43 Score=28.73 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=40.7
Q ss_pred cceEEEEECC-------CCCEEEEeeCCCeEEEeeCCCcEEEE---Ee-eecccCeEEEEEccCCcEEEEecCCceEE
Q 021319 192 AGCYCIAIDP-------MGRYFAVGSADSLVSLWDISEMLCVR---TF-TKLEWPVRTISFSHTGDYIASASEDLFID 258 (314)
Q Consensus 192 ~~i~~i~~~~-------~~~~l~t~~~dg~i~vwd~~~~~~~~---~~-~~~~~~v~~~~~sp~~~~l~s~s~d~~v~ 258 (314)
.++..+.|-. .|.+++..-..+.|...++.....+. .+ ......+..+++.|||.+.++-+.+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4566666642 35566666666778888876443222 21 12333688999999999988888787663
No 468
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=77.95 E-value=6.9 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=16.9
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEe
Q 021319 194 CYCIAIDPMGRYFAVGSADSLVSLW 218 (314)
Q Consensus 194 i~~i~~~~~~~~l~t~~~dg~i~vw 218 (314)
+..++++++|+.+++=..+..|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777766666666654
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.30 E-value=22 Score=23.80 Aligned_cols=44 Identities=14% Similarity=-0.029 Sum_probs=27.4
Q ss_pred ecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEec
Q 021319 251 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGD 294 (314)
Q Consensus 251 ~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~ 294 (314)
+..+|.+.-||..+++.---+..-.--+.|+.+|++.+++.+=.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 34568889999988764322222234789999999998776543
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.15 E-value=59 Score=28.76 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=77.4
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccCC--eEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeCCCC-C---cee
Q 021319 112 INITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-R---PLD 185 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~---~~~ 185 (314)
..+...+++.+++++....-+.-+|.-.. +++. ......+..+.+.+++..++++.. |.+..-..... . ...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEeCC-ceEEEecCCCCccccccee
Confidence 34556788888777765544444443221 2222 222345677888888887776644 44433222111 0 112
Q ss_pred eeee--cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe---eecccCeEEEEEccCCcEEEEecCCceEE
Q 021319 186 TVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF---TKLEWPVRTISFSHTGDYIASASEDLFID 258 (314)
Q Consensus 186 ~~~~--~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~s~d~~v~ 258 (314)
.... -...++.+.+.+++..+++| .+|.+..-. ..++.-+.. .+...+...+.|.++++-+++| .+|.|.
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 1111 12347889999888776655 567555554 334332221 2344567889998877766654 455443
No 471
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=74.72 E-value=51 Score=27.81 Aligned_cols=220 Identities=13% Similarity=0.194 Sum_probs=119.3
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEeecCCCCCC---ceeeEEeec-----CCCCEEEEEEcCCC-----------CCEE
Q 021319 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRG-----HADSVDQLCWDPKH-----------ADLI 82 (314)
Q Consensus 22 ~V~~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~l 82 (314)
.-.-|+++|.+..-++...-+...+||.+...+. ......++. -....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3467899999999888888899999998732211 111223331 12345566665321 1236
Q ss_pred EEEeCCCcEEEEeCCCCce---eeeEEec----Cce---EEEEEccCCCEEEEE-eCCCcEEEEEccCCeEeee------
Q 021319 83 ATASGDKTVRLWDARSGKC---SQQAELS----GEN---INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHR------ 145 (314)
Q Consensus 83 ~s~~~D~~v~iwd~~~~~~---~~~~~~~----~~~---~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~------ 145 (314)
+.+++||+|.=|...-+.. ....... +.. ++++-...+.+|... -..++|.++|-.- +++..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCccC
Confidence 7789999999998533322 1111111 111 223333345555544 4577899988432 21110
Q ss_pred --eccCcc---eee------EEe---ccCCCeEEEEcCCceEEEEeCCCCCceeeee--ecccceEEEEECC------CC
Q 021319 146 --RKFGYE---VNE------IAW---NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDP------MG 203 (314)
Q Consensus 146 --~~~~~~---~~~------~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~------~~ 203 (314)
+..++. +.. |.| .+....-+.+...|.|.+|+.... .++.+. +.-...+.|+..| .+
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000111 111 111 112222233445578888886432 222221 2223456777644 46
Q ss_pred CEEEEeeCCCeEEEeeCCCcEEEEEeeeccc------CeEEEEEcc
Q 021319 204 RYFAVGSADSLVSLWDISEMLCVRTFTKLEW------PVRTISFSH 243 (314)
Q Consensus 204 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~sp 243 (314)
.+|+---.||+|..||..++..+-.+..... ....|+|-.
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7888777899999999998887766654322 356677754
No 472
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.29 E-value=68 Score=28.61 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=103.0
Q ss_pred CEEEEEe-CCCcEEEEeCCCC----ceeeeEEe---c-----CceEEEEEccCCCEEEEEe--CC----CcEEEEEccCC
Q 021319 80 DLIATAS-GDKTVRLWDARSG----KCSQQAEL---S-----GENINITYKPDGTHIAVGN--RD----DELTILDVRKF 140 (314)
Q Consensus 80 ~~l~s~~-~D~~v~iwd~~~~----~~~~~~~~---~-----~~~~~~~~~~~~~~l~~~~--~d----~~i~i~d~~~~ 140 (314)
++|+..+ ..+.|.|.|+.+. +..+..+- . ...-.....|+|..++++- .+ |.+.++|-+++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 4454444 6789999998743 22233221 1 1112345568898887653 22 35888888888
Q ss_pred eEeeeeccCc----ceeeEEeccCCCeEEEEcC--------------------CceEEEEeCCCCCceeeeeecc--cce
Q 021319 141 KPIHRRKFGY----EVNEIAWNMTGEMFFLTTG--------------------NGTVEVLTYPSLRPLDTVVAHT--AGC 194 (314)
Q Consensus 141 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~~~~~~~~~~~~--~~i 194 (314)
..+.+.+... -.....|.|..+.++++.- ..++.+|++...+.++++..-. ..+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7776655432 2355677888887776531 4689999999998888775322 235
Q ss_pred EEEEE--CCCCCE-EEEeeCCCeEEEeeC-CCcEE----EEEeee-----c------------ccCeEEEEEccCCcEEE
Q 021319 195 YCIAI--DPMGRY-FAVGSADSLVSLWDI-SEMLC----VRTFTK-----L------------EWPVRTISFSHTGDYIA 249 (314)
Q Consensus 195 ~~i~~--~~~~~~-l~t~~~dg~i~vwd~-~~~~~----~~~~~~-----~------------~~~v~~~~~sp~~~~l~ 249 (314)
..+.| +|+..+ ++.+.....|-.|-- +.+.- +-++.. - ..-+..|.+|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 56666 455555 444444555555443 33321 111111 0 12368899999999998
Q ss_pred Eec-CCceEEEEECCCC---CeEEEEeccCcc-----------------ceeEEcCCCCeeEEEe
Q 021319 250 SAS-EDLFIDISNVHTG---RTVHQIPCRAAM-----------------NSVEWNPKYNLLAYAG 293 (314)
Q Consensus 250 s~s-~d~~v~v~~~~~~---~~~~~~~~~~~i-----------------~~v~~~~~~~~la~~~ 293 (314)
... .+|.++.||+... ++..++...+.+ .-|..|.||+.|-..+
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 665 5899999998653 444444333322 4567788887775444
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=72.34 E-value=42 Score=31.99 Aligned_cols=69 Identities=7% Similarity=0.093 Sum_probs=39.8
Q ss_pred cCceEEEEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcceeeEEeccCCCeEEEEcCCceEEEEeC
Q 021319 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178 (314)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (314)
.....++.-+|.+..++++..|++|.+++......-+-.....+...+.+... -+++...+.+...|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh--gl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH--GLVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc--ceEEEeccchhheeec
Confidence 33455677789999999999999999998754332111111122333333322 2444555555555543
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.04 E-value=1.2e+02 Score=30.72 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=43.0
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCe
Q 021319 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 267 (314)
Q Consensus 190 ~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~ 267 (314)
+..++.+..+...... +.+...+.+-.|+....... +.+.+.....++++..++++..||.+..||+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQ-----SAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCc-ceeeeeeeeeehhcccccch-----hhcccccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 4444555554433333 33444556666664433222 222233233388899999999999999999988765
No 475
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.56 E-value=1.3e+02 Score=30.63 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCcEEEeecCC---CC-----CCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEeC-CCCceeeeEEecCce
Q 021319 41 DQTARVWHIEP---HG-----HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA-RSGKCSQQAELSGEN 111 (314)
Q Consensus 41 D~~v~iw~~~~---~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D~~v~iwd~-~~~~~~~~~~~~~~~ 111 (314)
-|.+.|+|+-. .. ..+.+.+-.+..+++|.+++=. . + .|+++. ...|.+|++ +....+......-+.
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~-G-~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~ 1139 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-R-G-HLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPL 1139 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-c-c-EEEEcc-CcEEEEEEeccCCcceeeEEeccce
Confidence 46788888632 11 1123333344567888887743 2 3 555554 368899998 444433322222222
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEccC-CeE---eeeeccCcceeeEEeccCCC--eEEEEcCCceEEEEeCCC
Q 021319 112 INITYKPDGTHIAVGNRDDELTILDVRK-FKP---IHRRKFGYEVNEIAWNMTGE--MFFLTTGNGTVEVLTYPS 180 (314)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~ 180 (314)
....+.--.+++..|.--..|.++-... +.. +.+-.....+.++.|-.+|. .++++..++++++|-+.+
T Consensus 1140 yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1140 YVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 2222333345666665555555543322 111 12222234566777766665 467788899999987654
No 476
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.15 E-value=87 Score=28.52 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCceeeeEEecCceEE-EEEccCCCEEEEEeCCCcEEEEEccCCeEeeeeccCcc----eeeEEeccCC
Q 021319 87 GDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE----VNEIAWNMTG 161 (314)
Q Consensus 87 ~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~ 161 (314)
......+.|.. |.+............ +...++|.+++... ..+..+|+- ++.+.....+.. ...+..-|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 34555666653 444333333222221 55678888877665 677777764 334443433321 3456667788
Q ss_pred CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe------------
Q 021319 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF------------ 229 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~------------ 229 (314)
+.++.+........ .. ........ -+.++++| ..+..||+.+.......
T Consensus 202 n~L~l~~~~~~~~~-----~~---~~~~~~D~--Ivevd~tG---------~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 202 NLLILASETKYVDE-----DK---DVDTVEDV--IVEVDPTG---------EVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp -EEEEEEETTEE-T-----S----EE---S-E--EEEE-TTS----------EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred CEEEEEeecccccC-----CC---CccEecCE--EEEECCCC---------CEEEEEehHHhCCcccccccccccccccc
Confidence 87776653322211 00 00000111 12222333 34778887654311111
Q ss_pred ---eecc-cCeEEEEEcc-CCcEEEEecCCceEEEEECCCCCeEEEEe
Q 021319 230 ---TKLE-WPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIP 272 (314)
Q Consensus 230 ---~~~~-~~v~~~~~sp-~~~~l~s~s~d~~v~v~~~~~~~~~~~~~ 272 (314)
...+ ..++++.+.| ++.+++|+=.-..|...|..+++....+.
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0111 1589999999 56666666556688888988888877764
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=70.12 E-value=73 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=24.9
Q ss_pred EecCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 021319 106 ELSGENINITYKPDGTHIAVGNRDDELTILD 136 (314)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 136 (314)
+....++..+|+.|.+.+++...+..|.+++
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 3456677888999999888888888888876
No 478
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=70.05 E-value=70 Score=27.43 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=25.7
Q ss_pred CCEEEEEeCC-----------CcEEEEeCCCCceeeeE-EecCceE-EEEE-ccCCCEEEEEeCC
Q 021319 79 ADLIATASGD-----------KTVRLWDARSGKCSQQA-ELSGENI-NITY-KPDGTHIAVGNRD 129 (314)
Q Consensus 79 ~~~l~s~~~D-----------~~v~iwd~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~l~~~~~d 129 (314)
+.+.+.|+.+ ..+..||..+....... ....... .... ..+++..++|+.+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 3566666653 24667888776543322 1111111 1112 3467777888764
No 479
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=69.68 E-value=15 Score=34.23 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred eEEEEEccCCcEEE-----EecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCccccccc
Q 021319 236 VRTISFSHTGDYIA-----SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 303 (314)
Q Consensus 236 v~~~~~sp~~~~l~-----s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~~~~~~~ 303 (314)
+-.++.|||.+++| .|++...+++-|+++|..+-.. ..+...+++|.++++.|.+...|.+. ++..
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-i~~~~~~~~Wa~d~~~lfYt~~d~~~-rp~k 201 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-ITNTSGSFAWAADGKTLFYTRLDENH-RPDK 201 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-hcccccceEEecCCCeEEEEEEcCCC-Ccce
No 480
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.22 E-value=32 Score=22.81 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=32.0
Q ss_pred CeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec-CCceEEEEECCC
Q 021319 213 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFIDISNVHT 264 (314)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~d~~v~v~~~~~ 264 (314)
+.|..||..+.+.+ ..+.. ..+.|.++|++++|..++ ....|+++..++
T Consensus 36 ~~Vvyyd~~~~~~v--a~g~~-~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVV--ASGFS-FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEe--eccCC-CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 44666775443322 22222 357799999999888776 568899997654
No 481
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.64 E-value=14 Score=18.42 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=19.2
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEee
Q 021319 193 GCYCIAIDPMGRYFAVGSADSLVSLWD 219 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd 219 (314)
.|.+++..+ .+++.+.+.+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 467777764 4888888889999873
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.71 E-value=82 Score=26.93 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=60.3
Q ss_pred eEEEEECCCCCEEEEeeCC------CeEEEeeCCCcEEEEEee---------------ecccCeEEEEEccCCcEEEEec
Q 021319 194 CYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRTFT---------------KLEWPVRTISFSHTGDYIASAS 252 (314)
Q Consensus 194 i~~i~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~s~s 252 (314)
...|++.+++.++++.-.+ -.|.-++.. +..+..+. ......-+++++|+|+.|.++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4477887888888877777 788888865 54443331 1123467899999999777664
Q ss_pred C-----Cc--e-------EEE--EECCC-CCeEEEEe----------ccCccceeEEcCCCCeeE
Q 021319 253 E-----DL--F-------IDI--SNVHT-GRTVHQIP----------CRAAMNSVEWNPKYNLLA 290 (314)
Q Consensus 253 ~-----d~--~-------v~v--~~~~~-~~~~~~~~----------~~~~i~~v~~~~~~~~la 290 (314)
+ |+ . +++ +|..+ ++...++. ....+..+.+-|++.+|+
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 4 22 1 344 44444 33333332 124678888888888765
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.04 E-value=73 Score=28.52 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=83.3
Q ss_pred ceeeEEeccCCCeEEEEcCCceEEEEeCCCCCc-eeeeeec-cc----ceE-EEEECCCCCEEEEeeCCCeEEEe-eCCC
Q 021319 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAH-TA----GCY-CIAIDPMGRYFAVGSADSLVSLW-DISE 222 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~-~~----~i~-~i~~~~~~~~l~t~~~dg~i~vw-d~~~ 222 (314)
++..+-..|+++.+.+-++ ..+.++++.+... ..++... ++ .++ .+..-..|..+.+++.||.|.-| |+++
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 4556667889988877766 6777777643221 1111110 11 111 11112235567778889988777 4432
Q ss_pred c-E----EEEEeeecccCeEEEEEccCCcEEEEecCCceEEEEECCCCCeEEEEeccCccceeEEcCCCCeeEEEecCCc
Q 021319 223 M-L----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 297 (314)
Q Consensus 223 ~-~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~~la~~~~d~~ 297 (314)
. . .++.++-...++.-+.=-.+-+-+++-+..|.+.++..-..+.+..-..-..+.-+++||++..|++- |
T Consensus 301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e--~-- 376 (733)
T COG4590 301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE--D-- 376 (733)
T ss_pred CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee--c--
Confidence 2 1 12222222233333322223356777788888887766554544433333467778999999988643 3
Q ss_pred ccccccceEEeccccC
Q 021319 298 KYQADEGVFRIYGFEN 313 (314)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (314)
.|-++++-+||
T Consensus 377 -----~gki~~~~l~N 387 (733)
T COG4590 377 -----QGKIRLAQLEN 387 (733)
T ss_pred -----CCceEEEEecC
Confidence 24566666654
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.83 E-value=1.1e+02 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.3
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEeeCCC
Q 021319 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (314)
Q Consensus 193 ~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~ 222 (314)
.+..++.++..+.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488999999999999999999999999974
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=63.56 E-value=91 Score=30.64 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=53.4
Q ss_pred CeEEEEcCCceEEEEeCCCCCceeeeeecccceEEEEECCCCCEEEE-eeCCC-----eEEEeeCCCc-EEEEEeeeccc
Q 021319 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV-GSADS-----LVSLWDISEM-LCVRTFTKLEW 234 (314)
Q Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~t-~~~dg-----~i~vwd~~~~-~~~~~~~~~~~ 234 (314)
+..++....+++.+.|.....+......+...+..-+|||||+.||- .+-++ .|.+-|+.+. .-+-++.....
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 34444444458888888776655432456777888899999999886 34444 4777787642 22222333344
Q ss_pred CeEEEEEccCCcEEE
Q 021319 235 PVRTISFSHTGDYIA 249 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~ 249 (314)
.|..-...++|..++
T Consensus 400 aiprwrv~e~gdt~i 414 (912)
T TIGR02171 400 AIPRWRVLENGDTVI 414 (912)
T ss_pred cccceEecCCCCeEE
Confidence 555556667776544
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.32 E-value=1e+02 Score=26.90 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=19.4
Q ss_pred cEEEEeCCCCceeeeEEecCce---EEEEEccCCCEEEEEeCC
Q 021319 90 TVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRD 129 (314)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d 129 (314)
.+..||..+............. .......++++.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 4667888766544322111111 111111467777787754
No 487
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=63.07 E-value=90 Score=26.15 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred CeEEEEEccCCcEEEEecCCceEEEEECCCCC---eEEEEecc----CccceeEEcC--CCCeeEEEecCCc----cccc
Q 021319 235 PVRTISFSHTGDYIASASEDLFIDISNVHTGR---TVHQIPCR----AAMNSVEWNP--KYNLLAYAGDDKN----KYQA 301 (314)
Q Consensus 235 ~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~~~---~~~~~~~~----~~i~~v~~~~--~~~~la~~~~d~~----~~~~ 301 (314)
....++++++|.+.++--....|..|+..+.- ....+... .-..++++.+ ++.+-+.++.=.. ..-.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~ 266 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRFAYGNLNP 266 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SSTGGG---
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHhhccCCCC
Confidence 45678899999999999999999999987621 22222221 2357899998 7877766664211 1124
Q ss_pred ccceEEeccc
Q 021319 302 DEGVFRIYGF 311 (314)
Q Consensus 302 ~~~~~~~~~~ 311 (314)
++-.+|||-+
T Consensus 267 ~e~nfri~~~ 276 (287)
T PF03022_consen 267 DEVNFRIWRA 276 (287)
T ss_dssp SS-SEEEEES
T ss_pred CccEEeEEEe
Confidence 5667777765
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.87 E-value=43 Score=22.37 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=27.0
Q ss_pred eeCCCeEEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEe
Q 021319 209 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 251 (314)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 251 (314)
+..+|.+.-||..+.+..-.+.+.. -.+.|+.+||+++|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEE
Confidence 4567889999998876543344443 46789999999977654
No 489
>PLN02153 epithiospecifier protein
Probab=62.36 E-value=1e+02 Score=26.46 Aligned_cols=184 Identities=8% Similarity=-0.058 Sum_probs=0.0
Q ss_pred CCCEEEEeeCC-----CcEEEeecCCCCCCceeeEEeecCCCCEEEEEEcCCCCCEEEEEeCC-----------CcEEEE
Q 021319 31 TGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----------KTVRLW 94 (314)
Q Consensus 31 ~g~~l~s~~~D-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~D-----------~~v~iw 94 (314)
+++.++-||.+ ..+.+||..+........+.......+....+....++.+.+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Q ss_pred eCCCCceeeeEEe----cCceEEEEEccCCCEEEEEeCC-------------CcEEEEEccCCeEeeeec----cCccee
Q 021319 95 DARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRD-------------DELTILDVRKFKPIHRRK----FGYEVN 153 (314)
Q Consensus 95 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~----~~~~~~ 153 (314)
|..+.+....... ..........-+++..+.++.+ ..+.+||+.+.+...... ......
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~ 244 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV 244 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Q ss_pred eEEeccCCCeEEEEcC--------------CceEEEEeCCCCCceeeeeecccc-------eEEEEECCCCCEEEEeeCC
Q 021319 154 EIAWNMTGEMFFLTTG--------------NGTVEVLTYPSLRPLDTVVAHTAG-------CYCIAIDPMGRYFAVGSAD 212 (314)
Q Consensus 154 ~~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~-------i~~i~~~~~~~~l~t~~~d 212 (314)
..+....+..+++++. ...+..|+....+-...-.....+ ..++.+..+++.++.|+.+
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~ 324 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKL 324 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcC
Q ss_pred Ce
Q 021319 213 SL 214 (314)
Q Consensus 213 g~ 214 (314)
+.
T Consensus 325 ~~ 326 (341)
T PLN02153 325 PT 326 (341)
T ss_pred CC
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.65 E-value=1.1e+02 Score=31.27 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=48.7
Q ss_pred EcCCceEEEEeCCCCCceeeeeecccceEEEEE--------CCCCCEEEEeeCCCeEEEeeCCCcE-------EE--EEe
Q 021319 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI--------DPMGRYFAVGSADSLVSLWDISEML-------CV--RTF 229 (314)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~i~~--------~~~~~~l~t~~~dg~i~vwd~~~~~-------~~--~~~ 229 (314)
.+-|+.+.+|++.+......+.+....|..+.+ .|.=+++..-+.--.|.++-+.-.. .. .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 345677888888775555555554444544432 2222333333333335555432110 00 112
Q ss_pred eecccCeEEEEEccCCcEEEEecCCceEEEEEC
Q 021319 230 TKLEWPVRTISFSHTGDYIASASEDLFIDISNV 262 (314)
Q Consensus 230 ~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~ 262 (314)
......|+++....+|+.+.+|-.| .+|.+
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl 204 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG---NLYEL 204 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC---CEEEE
Confidence 2234568889988889988866555 44543
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=57.95 E-value=59 Score=27.46 Aligned_cols=75 Identities=9% Similarity=0.153 Sum_probs=53.2
Q ss_pred eEEEEEccCCcEEEEecCCceEEEEECC------CCCe-EEEEec------cCccceeEEcCCCCeeEEEec----CCcc
Q 021319 236 VRTISFSHTGDYIASASEDLFIDISNVH------TGRT-VHQIPC------RAAMNSVEWNPKYNLLAYAGD----DKNK 298 (314)
Q Consensus 236 v~~~~~sp~~~~l~s~s~d~~v~v~~~~------~~~~-~~~~~~------~~~i~~v~~~~~~~~la~~~~----d~~~ 298 (314)
-..|+|+|.+.+-++...-+...+||.. .... +-.++. ....+.+.||....+.++.+. ...+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4569999999999988888999999986 2222 233441 346889999987766566532 3346
Q ss_pred cccccceEEecc
Q 021319 299 YQADEGVFRIYG 310 (314)
Q Consensus 299 ~~~~~~~~~~~~ 310 (314)
|--|+|+|-=|.
T Consensus 105 f~tEdGTisaW~ 116 (336)
T TIGR03118 105 FVTEDGTLSGWA 116 (336)
T ss_pred EEeCCceEEeec
Confidence 667888887775
No 492
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=57.66 E-value=1.1e+02 Score=30.09 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=53.4
Q ss_pred EEEEeeCCCeEEEeeCCCcEEEEEe-eecccCeEEEEEccCCcEEEE-ecCCc-----eEEEEECCC-CCeEEEEec-cC
Q 021319 205 YFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIAS-ASEDL-----FIDISNVHT-GRTVHQIPC-RA 275 (314)
Q Consensus 205 ~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s-~s~d~-----~v~v~~~~~-~~~~~~~~~-~~ 275 (314)
+.......+.+.+-|....... .+ .....++.+=+|||||+.||- .|-++ .|.+-++.+ +..+-+++- ..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~-~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASR-AVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCce-EEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 3333333346777776543322 22 345667888899999999998 55444 478888764 344344432 33
Q ss_pred ccceeEEcCCC-CeeEEEecCCc
Q 021319 276 AMNSVEWNPKY-NLLAYAGDDKN 297 (314)
Q Consensus 276 ~i~~v~~~~~~-~~la~~~~d~~ 297 (314)
.|-.-.-..+| +.|++.++-++
T Consensus 400 aiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred cccceEecCCCCeEEEEEcCCCC
Confidence 45555555655 44566554433
No 493
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.58 E-value=2.1e+02 Score=28.70 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=77.7
Q ss_pred EEEEEccCCeEeeeeccC-----cceeeEEeccCCCe--EEEEc-----------CCceEEEEeCC-CCCceeeeeeccc
Q 021319 132 LTILDVRKFKPIHRRKFG-----YEVNEIAWNMTGEM--FFLTT-----------GNGTVEVLTYP-SLRPLDTVVAHTA 192 (314)
Q Consensus 132 i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~-----------~~g~~~~~~~~-~~~~~~~~~~~~~ 192 (314)
|.++|....+.+...+++ +.+....|+..... .+++. .+|.++.|+.- ..+.+..+ |..
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--h~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--HKT 932 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee--ecc
Confidence 666666655554443332 33455555544433 22222 23556666542 22222222 222
Q ss_pred ce--EEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEE--eeecccCeEEEEEccCCcEEEEecCCceEEEEECC-CCCe
Q 021319 193 GC--YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRT 267 (314)
Q Consensus 193 ~i--~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~-~~~~ 267 (314)
++ .-.++.|-..++.+ +....+++||+-+-+.++. ++....-|..+.+ .+..++.|..--.++..-.+ .+..
T Consensus 933 ~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 22 23355565555543 4566899999965433322 2222334555543 45666666544344433332 3445
Q ss_pred EEEEeccC---ccceeEEcCCCCeeEEEecCCccc
Q 021319 268 VHQIPCRA---AMNSVEWNPKYNLLAYAGDDKNKY 299 (314)
Q Consensus 268 ~~~~~~~~---~i~~v~~~~~~~~la~~~~d~~~~ 299 (314)
+..+-... .|+++.+= |...+|.+..-++.|
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIA 1043 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEE
Confidence 55553221 34544443 566666666666655
No 494
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=57.33 E-value=32 Score=33.37 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=49.5
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe----e-----------eccc----CeEEEEEccCCcEEEEec
Q 021319 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----T-----------KLEW----PVRTISFSHTGDYIASAS 252 (314)
Q Consensus 192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~----~-----------~~~~----~v~~~~~sp~~~~l~s~s 252 (314)
..|.++.....+.+++..-.||+|.++|-.+++.+... . +... ++..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34677777777889999999999999998877554332 1 1111 234588999999999999
Q ss_pred CCceEE
Q 021319 253 EDLFID 258 (314)
Q Consensus 253 ~d~~v~ 258 (314)
.|+.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888765
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.02 E-value=1.1e+02 Score=25.51 Aligned_cols=93 Identities=5% Similarity=0.041 Sum_probs=0.0
Q ss_pred EEEeeCCCcEEEEEeeecccCeEEEEEccCCcEEEEec------CCceEEEEECCCCCeEEEEecc-----CccceeEEc
Q 021319 215 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS------EDLFIDISNVHTGRTVHQIPCR-----AAMNSVEWN 283 (314)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s------~d~~v~v~~~~~~~~~~~~~~~-----~~i~~v~~~ 283 (314)
|++||....+-..--.+....|.++.|..+.+.++.|. ....+..||..+..--..-... ++++.+.+.
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEee
Q ss_pred CCCCeeEE-----EecCCcccccccceEE
Q 021319 284 PKYNLLAY-----AGDDKNKYQADEGVFR 307 (314)
Q Consensus 284 ~~~~~la~-----~~~d~~~~~~~~~~~~ 307 (314)
.+...=.. +..+..++.+++....
T Consensus 98 ~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 98 SNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred ccCCceEEEeceecCCCceEEEEcCCceE
No 496
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.80 E-value=2e+02 Score=27.72 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=29.5
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEeeCCCcEEEEEe
Q 021319 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (314)
Q Consensus 192 ~~i~~i~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~ 229 (314)
..+..+.+||++++||.=...|.|.+-+++..+++-.+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 45678899999999999999999988887655444343
No 497
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=55.36 E-value=1.3e+02 Score=25.52 Aligned_cols=178 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCe-----EeeeeccCcceeeEEeccCCCeEEEEcC-----CceEEEEeCCCCCc
Q 021319 119 DGTHIAVGNRD-----DELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYPSLRP 183 (314)
Q Consensus 119 ~~~~l~~~~~d-----~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~ 183 (314)
++.+++.|+.+ ..+..+|+.+.+ ..............+-..++..+++++. ...+..|+....+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Q ss_pred eeee-eecccceEEEEECCCCCEEEEeeCCCe----EEEeeCCCcEEEEEe------eecccCeEEEEEccCCcEEEEec
Q 021319 184 LDTV-VAHTAGCYCIAIDPMGRYFAVGSADSL----VSLWDISEMLCVRTF------TKLEWPVRTISFSHTGDYIASAS 252 (314)
Q Consensus 184 ~~~~-~~~~~~i~~i~~~~~~~~l~t~~~dg~----i~vwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~s 252 (314)
...- ..........+...++++.+.|+.++. +..||..+.+-...- ..............++++++.|+
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Q ss_pred CC-------------------------------------ceEEEEECCCC--CeEEEEeccCccceeEEcCCCCeeEEEe
Q 021319 253 ED-------------------------------------LFIDISNVHTG--RTVHQIPCRAAMNSVEWNPKYNLLAYAG 293 (314)
Q Consensus 253 ~d-------------------------------------~~v~v~~~~~~--~~~~~~~~~~~i~~v~~~~~~~~la~~~ 293 (314)
.+ ..+.++|..+. ..+..++...+...-.-.-++++.+.+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Q ss_pred cCC
Q 021319 294 DDK 296 (314)
Q Consensus 294 ~d~ 296 (314)
..+
T Consensus 312 ~~~ 314 (323)
T TIGR03548 312 ELK 314 (323)
T ss_pred ccc
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=54.89 E-value=1.6e+02 Score=26.56 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=56.7
Q ss_pred ceeeEEeccCCCeEEEEcCCceEEEEeCCCCC--ceee---ee--ecccceEEEEECCCC------CEEEEee-------
Q 021319 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDT---VV--AHTAGCYCIAIDPMG------RYFAVGS------- 210 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~---~~--~~~~~i~~i~~~~~~------~~l~t~~------- 210 (314)
....++|.|++.++++--..|.+++++..... .+.. +. ........|+++|+- .+|....
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 35678888998766655556899888654322 1111 11 124668899999874 2343331
Q ss_pred ---CCCeEEEeeCCCc-------EEE-EEeee-cccCeEEEEEccCCcEEEEecCC
Q 021319 211 ---ADSLVSLWDISEM-------LCV-RTFTK-LEWPVRTISFSHTGDYIASASED 254 (314)
Q Consensus 211 ---~dg~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~sp~~~~l~s~s~d 254 (314)
....|.-|.+... +.+ ..+.. ..+.-..|+|.|||.+.++.+..
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544311 111 11111 11235678999999877755543
No 499
>PRK10115 protease 2; Provisional
Probab=54.74 E-value=2.1e+02 Score=27.63 Aligned_cols=200 Identities=8% Similarity=0.057 Sum_probs=93.2
Q ss_pred CEEEEEEcCCCCCEEEEEeCC----CcEEEEeCCCCceeeeEEecCceEEEEEccCCCEEEEEeCC------CcEEEEEc
Q 021319 68 SVDQLCWDPKHADLIATASGD----KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD------DELTILDV 137 (314)
Q Consensus 68 ~v~~l~~~~~~~~~l~s~~~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~ 137 (314)
.+..+.|+|++..++++.+.+ ..+++-|+.++...... +......++|.+|++.|+....+ ..+..+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 466788899865343443333 45778888877532221 12222458899999877665443 23555666
Q ss_pred cCCe----EeeeeccCcceeeEEe-ccCCCeEEEEcC---CceEEEEeCC--CCCceeeeeecccc-eEEEEECCCCCEE
Q 021319 138 RKFK----PIHRRKFGYEVNEIAW-NMTGEMFFLTTG---NGTVEVLTYP--SLRPLDTVVAHTAG-CYCIAIDPMGRYF 206 (314)
Q Consensus 138 ~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~g~~~~~~~~--~~~~~~~~~~~~~~-i~~i~~~~~~~~l 206 (314)
.+.. .+..... .......+ +.++..++.... ++.+.+++.. ...+. .+..+... .+.+. +..+.+.
T Consensus 207 gt~~~~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 207 GTPASQDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF-VFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred CCChhHCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce-EEEECCCCCEEEEE-eCCCEEE
Confidence 5541 2222111 11121223 336665554432 3566666632 22221 12222222 22222 3233333
Q ss_pred EEeeCC-C--eEEEeeCCCcEEEEEeeec--ccCeEEEEEccCCcEEEEecCCceEEEEECCC-CCeEEEEe
Q 021319 207 AVGSAD-S--LVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQIP 272 (314)
Q Consensus 207 ~t~~~d-g--~i~vwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~d~~v~v~~~~~-~~~~~~~~ 272 (314)
+....+ . .|...++......+.+..+ +..+..+.++ .+.++++...++.-.++-+.. +..+..+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 333222 2 3333344321112233333 2357777776 446666777777655554432 33344443
No 500
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=53.70 E-value=85 Score=22.89 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=51.6
Q ss_pred EEEECCCCCEEEEeeCCCcEEEeecCCCCCC---ceeeEEeecCCCCEEEEEEcCC----CCCEEEEEeCCCcEEEEeCC
Q 021319 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPK----HADLIATASGDKTVRLWDAR 97 (314)
Q Consensus 25 ~v~~s~~g~~l~s~~~D~~v~iw~~~~~~~~---~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~D~~v~iwd~~ 97 (314)
.-.|......|+++..-+.|-|.+....... ....+.+-.-+..|.+++--+- ..+.|+-| ...++..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 3456667778888888899999876432210 0011122334566777765442 24555555 45689999998
Q ss_pred CCceeeeEEecCceEEE
Q 021319 98 SGKCSQQAELSGENINI 114 (314)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ 114 (314)
...-.+..+......++
T Consensus 82 ~N~d~Fyke~~DGvn~i 98 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAI 98 (136)
T ss_pred cCchhhhhhCccceeEE
Confidence 76544444444433333
Done!