Query 021320
Match_columns 314
No_of_seqs 244 out of 1158
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4130 Prenyl protein proteas 100.0 2.8E-63 6.1E-68 450.0 22.2 272 8-301 2-282 (291)
2 PF02517 Abi: CAAX protease se 99.7 2.2E-16 4.8E-21 123.6 9.3 86 155-260 6-91 (91)
3 TIGR03008 pepcterm_CAAX CAAX p 99.5 5.4E-14 1.2E-18 129.1 9.3 81 157-260 121-208 (222)
4 COG1266 Predicted metal-depend 99.5 2.9E-13 6.3E-18 120.3 9.6 89 154-259 124-212 (226)
5 COG4449 Predicted protease of 95.5 0.0062 1.3E-07 61.8 1.5 98 156-259 712-811 (827)
6 PF13367 PrsW-protease: Protea 81.4 22 0.00048 31.3 10.7 108 156-263 43-174 (191)
7 PHA02758 hypothetical protein; 65.5 23 0.0005 33.2 6.8 48 242-290 269-319 (321)
8 PF10086 DUF2324: Putative mem 59.0 84 0.0018 29.0 9.4 44 154-202 62-105 (223)
9 PF10287 DUF2401: Putative TOS 30.2 29 0.00063 32.5 1.5 21 290-312 132-152 (235)
10 TIGR02115 potass_kdpF K+-trans 22.1 71 0.0015 19.9 1.7 23 276-298 3-25 (26)
No 1
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-63 Score=450.02 Aligned_cols=272 Identities=32% Similarity=0.532 Sum_probs=236.3
Q ss_pred cCCHHHHHHHHHHHHhheeEEeeccCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh---hhhhhcc
Q 021320 8 YVSKAAALMACVLMTLSYVGILYAPTLILRLPPPASLKHYLIRRFICAAISSIISLIFSALILPIRSWET---SNVLGVY 84 (314)
Q Consensus 8 ~i~~~~a~~~~~~~a~sYV~sLY~~~~~~~r~~p~~~~~~i~rR~~~v~~~~~~s~~~~~~~l~~~~~~~---~~~l~~l 84 (314)
.+.+.+++..|+.++++||+|+|+|+..++|||||+| |||+.+|++++..|+++++++.++..... ......+
T Consensus 2 ~~~~~ssff~~lyla~sYv~ply~~s~~lnRdhP~tI----krRf~svlivss~~~flv~f~~s~ellgi~pg~~~p~ln 77 (291)
T KOG4130|consen 2 RMLQFSSFFVCLYLAISYVGPLYAWSQPLNRDHPRTI----KRRFQSVLIVSSSNPFLVPFLQSQELLGIIPGYYAPLLN 77 (291)
T ss_pred CceeeeHHHHHHHHHHHheeeeeecCCccCCCCcHHH----HHHHHHHHHHHhhchHHHHHHhhhhhhccCcCccccccc
Confidence 3456678999999999999999999988888888777 78999999999999999999876433211 1345678
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhHHHHHHHHhhcccccCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 021320 85 GIRADHMWQAAVFPLFLTSLMYAGSMVLKSLLLLNSWTTDMNNSGGLSLGCIKIVLWSLRAQMFAVASNILAWRNFVVAP 164 (314)
Q Consensus 85 Gi~~~~~~~a~~~~l~Lt~iLf~GPl~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~w~~~~~~~~~l~~~~~~rn~vvaP 164 (314)
|++.+|++++.++|+.+|++||+||++|-.++.. +.+. .+..+|| ++++.|++++||.|+||
T Consensus 78 ~frfeg~~~avlk~lllt~tLflGPl~~v~m~~~-----------~~r~-~fil~~~------~~cf~nii~~RN~iiaP 139 (291)
T KOG4130|consen 78 GFRFEGFVKAVLKPLLLTLTLFLGPLLDVVMYHL-----------LNRK-SFILEDW------YHCFLNIIWFRNFIIAP 139 (291)
T ss_pred ceeccchHHHHHHHHHHHHHHHhhhhhheeeecc-----------ccch-hccHHHH------HHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999998664321 1121 2335677 88999999999999999
Q ss_pred hHHHHHHHHhhHHHHhcCCCCCceehhhhHHHHHHhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021320 165 LTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVFGWYASFLFIRT 244 (314)
Q Consensus 165 i~EElvFRg~i~~~l~~~~~~~~~ailissllFglaH~~~~~e~~~~~~~~~~~a~~~~~~Q~~yt~lfG~~~~~ly~rT 244 (314)
++||++||+||++..++..++..++++.+|++||+||.||++|+...+.++...+++++.||+.||++||+|.+++|+||
T Consensus 140 LtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaflF~rT 219 (291)
T KOG4130|consen 140 LTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAFLFVRT 219 (291)
T ss_pred chHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999986668999999999999999999999999977668888999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhhchhhhhh------cchhHHHHHHHHHHHHHHHHHhcCCCCccccCCC
Q 021320 245 GHLAAPLIAHIFCNYMGLPVLFA------RNRGLVSVAFVAGMVAFLWLLFPITRPDLYNDRT 301 (314)
Q Consensus 245 gsL~~~il~H~~~N~mg~P~~~~------~~~~~~~~~~v~G~v~f~~~L~~lt~~~~y~~~~ 301 (314)
||+|.||++|+|||.||+|++.+ +||....+.|.+|+..|+.++.+.|+|+.|++.+
T Consensus 220 ghl~~~iLvHAfCN~MGfP~l~~~~~~~~~rri~a~v~~llgv~~fllllgl~t~~~~~d~lp 282 (291)
T KOG4130|consen 220 GHLWCPILVHAFCNIMGFPNLHFTVVDKKARRISALVSYLLGVYFFLLLLGLITDPDTYDTLP 282 (291)
T ss_pred CCchHHHHHHHHHhhcCChhHHHHHcCcccchHHHHHHHHHHHHHHHHHhccccCchhhccCC
Confidence 99999999999999999999976 2344446779999999999999999999998864
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.67 E-value=2.2e-16 Score=123.63 Aligned_cols=86 Identities=33% Similarity=0.527 Sum_probs=75.6
Q ss_pred HHHHHHhhhhhHHHHHHHHhhHHHHhcCCCCCceehhhhHHHHHHhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021320 155 LAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVFG 234 (314)
Q Consensus 155 ~~~rn~vvaPi~EElvFRg~i~~~l~~~~~~~~~ailissllFglaH~~~~~e~~~~~~~~~~~a~~~~~~Q~~yt~lfG 234 (314)
..+...+++|+.||++|||.+++.+.+ +.++..++++++++||+.|.... .|+.+++++|
T Consensus 6 ~~~~~~~~~~~~EEl~fRg~l~~~l~~-~~~~~~a~~is~~~f~~~H~~~~-------------------~~~~~~~~~g 65 (91)
T PF02517_consen 6 FFLVMILIAPIAEELFFRGFLFNRLRR-RFNPWFAILISSLLFALWHLPNG-------------------PQFIYAFLFG 65 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHH
Confidence 456778899999999999999999854 45678999999999999998761 2367888999
Q ss_pred HHHHHHHHHhCCchHHHHHHHHhhhh
Q 021320 235 WYASFLFIRTGHLAAPLIAHIFCNYM 260 (314)
Q Consensus 235 ~~~~~ly~rTgsL~~~il~H~~~N~m 260 (314)
+.++++|.||||+|+++++|+.+|.+
T Consensus 66 ~~~~~~~~~t~sl~~~i~~H~~~n~~ 91 (91)
T PF02517_consen 66 LLFGYLYLRTGSLWAAIIAHALWNLV 91 (91)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHcC
Confidence 99999999999999999999999974
No 3
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.51 E-value=5.4e-14 Score=129.12 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=67.4
Q ss_pred HHHHhhhhhHHHHHHHHhhHHHHhcCCC-------CCceehhhhHHHHHHhhccchHHHHHhhhhhHHHHHHHHHHHHHH
Q 021320 157 WRNFVVAPLTEELVFRACMIPLLLCGGF-------KINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGY 229 (314)
Q Consensus 157 ~rn~vvaPi~EElvFRg~i~~~l~~~~~-------~~~~ailissllFglaH~~~~~e~~~~~~~~~~~a~~~~~~Q~~y 229 (314)
....+++|+.||++|||++++.+.++++ ..+.++++||++||+.|.. ...
T Consensus 121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-----------------------~~~ 177 (222)
T TIGR03008 121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-----------------------IVA 177 (222)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 3457889999999999999999854222 2457899999999999952 224
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHhhhh
Q 021320 230 TVVFGWYASFLFIRTGHLAAPLIAHIFCNYM 260 (314)
Q Consensus 230 t~lfG~~~~~ly~rTgsL~~~il~H~~~N~m 260 (314)
+++.|+..+++|.||||++.||++|+.+|..
T Consensus 178 ~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~l 208 (222)
T TIGR03008 178 GLIAGLAYNLLLLRTGSIMACILAHAVTNGL 208 (222)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5677999999999999999999999999985
No 4
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.45 E-value=2.9e-13 Score=120.27 Aligned_cols=89 Identities=28% Similarity=0.459 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhHHHHhcCCCCCceehhhhHHHHHHhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 021320 154 ILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVF 233 (314)
Q Consensus 154 ~~~~rn~vvaPi~EElvFRg~i~~~l~~~~~~~~~ailissllFglaH~~~~~e~~~~~~~~~~~a~~~~~~Q~~yt~lf 233 (314)
...+-..+.+|+.||++|||.+++.+. ++.+.+.+++++|++||+.|..... . ...+.+++.+
T Consensus 124 ~~~~~~~i~~~l~EEl~fRg~l~~~l~-~~~~~~~a~iissllFal~H~~~~~------~----------~~~~~~~~~~ 186 (226)
T COG1266 124 LFFLVLLILAPLAEELLFRGYLLGALA-RRFGPLLAIIISSLLFALLHLPNGL------L----------LLYFLLYFIA 186 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HhcCcHHHHHHHHHHHHHHHhcccc------h----------HHHHHHHHHH
Confidence 344567889999999999999999974 5777789999999999999987621 0 1356788899
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHhhh
Q 021320 234 GWYASFLFIRTGHLAAPLIAHIFCNY 259 (314)
Q Consensus 234 G~~~~~ly~rTgsL~~~il~H~~~N~ 259 (314)
|...+++|.||||++.|+..|+.+|.
T Consensus 187 gli~~~~~~~t~~l~~~i~~H~~~N~ 212 (226)
T COG1266 187 GLILGLLYLRTGSLWVPILLHALINL 212 (226)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999999999999997
No 5
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=95.47 E-value=0.0062 Score=61.78 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=70.0
Q ss_pred HHHHHhhhhhHHHHHHHHhhHHHHhcCCCCCceehhhhH--HHHHHhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 021320 156 AWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCP--VFFSLAHLNHLMEIYSAQNFSLLKASMIVGLQLGYTVVF 233 (314)
Q Consensus 156 ~~rn~vvaPi~EElvFRg~i~~~l~~~~~~~~~ailiss--llFglaH~~~~~e~~~~~~~~~~~a~~~~~~Q~~yt~lf 233 (314)
.+|.+++-.+.||++||..+++--.. +.-+|..+.... ++|-+-|..++..+| .+|.+. ++.-.| +.-|.+.
T Consensus 712 iL~vIl~PAl~EElvFRvvLlP~P~E-~r~~W~tl~a~~~l~LfvLyHplnA~T~y-~rg~Pv---Ff~PiF-L~ltglL 785 (827)
T COG4449 712 ILTVILIPALGEELVFRVVLLPGPGE-GRRPWVTLGAATGLVLFVLYHPLNALTFY-PRGAPV---FFRPIF-LLLTGLL 785 (827)
T ss_pred hhhheehhhccccceeEEEecCCCCc-cccchHhHHHHHHHHHHHHhhhhhhhhcc-ccCCcc---eeccHH-HHHHHHH
Confidence 35777888899999999999886542 323455554443 489999998887776 444442 111112 4457788
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHhhh
Q 021320 234 GWYASFLFIRTGHLAAPLIAHIFCNY 259 (314)
Q Consensus 234 G~~~~~ly~rTgsL~~~il~H~~~N~ 259 (314)
|+-.+..|.-|||+|+.+++|-..=.
T Consensus 786 GL~Ctvty~vT~SlW~iV~lHW~vVv 811 (827)
T COG4449 786 GLGCTVTYRVTGSLWPIVLLHWAVVV 811 (827)
T ss_pred hhhhhhhHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999976433
No 6
>PF13367 PrsW-protease: Protease prsW family
Probab=81.39 E-value=22 Score=31.33 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHhhhhhHHHHHHHHhhHHHH--hcCCC-CCceehh---hhHHHHHHhhccchHHHHHhh-------h--hhHHHHH
Q 021320 156 AWRNFVVAPLTEELVFRACMIPLL--LCGGF-KINTIIF---LCPVFFSLAHLNHLMEIYSAQ-------N--FSLLKAS 220 (314)
Q Consensus 156 ~~rn~vvaPi~EElvFRg~i~~~l--~~~~~-~~~~ail---issllFglaH~~~~~e~~~~~-------~--~~~~~a~ 220 (314)
.+...+.+|++||.+==-.++-.. .++++ ++.-.++ .+++=|++..--...-....+ + ..+.+.+
T Consensus 43 ~~~~~~~a~~~EE~~K~l~v~~~~~~~~~~~~~~~d~~~~g~a~GlGFa~~En~~Y~~~~~~~~~~~~~~~~~~~~~R~~ 122 (191)
T PF13367_consen 43 LWGAFLIAPLVEEFAKLLPVLLLLLLRRRRFDEPMDGLVYGAAVGLGFAIMENILYILNAAEDNGGSVQGGLSTAILRGI 122 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHhhcCcchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 346678899999986322222222 12222 3333332 466777766543322111000 0 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------CCchHHHHHHHHhhhhchh
Q 021320 221 MIVGLQLGYTVVFGWYASFLFIRT---------GHLAAPLIAHIFCNYMGLP 263 (314)
Q Consensus 221 ~~~~~Q~~yt~lfG~~~~~ly~rT---------gsL~~~il~H~~~N~mg~P 263 (314)
........+|.+.|...++...+. +-+..+++.|+++|.....
T Consensus 123 ~~~~~H~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 123 TSVPGHALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555677889999998777766221 2467899999999996654
No 7
>PHA02758 hypothetical protein; Provisional
Probab=65.53 E-value=23 Score=33.15 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=35.4
Q ss_pred HHhCCchHHHHHHHHhhhhchhhhhh--c-chhHHHHHHHHHHHHHHHHHhc
Q 021320 242 IRTGHLAAPLIAHIFCNYMGLPVLFA--R-NRGLVSVAFVAGMVAFLWLLFP 290 (314)
Q Consensus 242 ~rTgsL~~~il~H~~~N~mg~P~~~~--~-~~~~~~~~~v~G~v~f~~~L~~ 290 (314)
.+.|.+.++|+-|++.|.+- ..+.+ + ......+...+|.++|.+-+++
T Consensus 269 yke~giiasiighafynagv-saf~d~ikgnpl~aiiliflglvgflyal~k 319 (321)
T PHA02758 269 YKEGGIIASIIGHAFYNAGV-SAFADGIKGNPLLAIILIFLGLVGFLYALFK 319 (321)
T ss_pred HhcCCchhhhhhHHHHHhHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999853 33333 2 2333568899999999888764
No 8
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=58.96 E-value=84 Score=29.02 Aligned_cols=44 Identities=20% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhHHHHhcCCCCCceehhhhHHHHHHhhc
Q 021320 154 ILAWRNFVVAPLTEELVFRACMIPLLLCGGFKINTIIFLCPVFFSLAHL 202 (314)
Q Consensus 154 ~~~~rn~vvaPi~EElvFRg~i~~~l~~~~~~~~~ailissllFglaH~ 202 (314)
...+-....|.+.||. .|=..+..+.+++.+... .++.||+.|.
T Consensus 62 l~~ly~~l~AGiFEE~-gR~i~~k~l~kk~~~~~~----~al~~GlGhG 105 (223)
T PF10086_consen 62 LYALYGGLMAGIFEET-GRYIGFKYLLKKRRDWSD----DALAYGLGHG 105 (223)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhh----HHHHHHcchH
Confidence 3445667889999994 455555555433332221 4777777775
No 9
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=30.20 E-value=29 Score=32.53 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=15.7
Q ss_pred cCCCCccccCCCCCccccccccc
Q 021320 290 PITRPDLYNDRTNNCRCLHGYCS 312 (314)
Q Consensus 290 ~lt~~~~y~~~~~~~~~~~~~~~ 312 (314)
.+.+...|+| .+|+||.+=|+
T Consensus 132 ~IpRT~QY~~--~~CSCW~sGCG 152 (235)
T PF10287_consen 132 QIPRTSQYGN--AGCSCWKSGCG 152 (235)
T ss_pred cCcchhhcCC--CCCCccCCCcc
Confidence 4556667744 79999999885
No 10
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.07 E-value=71 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.652 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcccc
Q 021320 276 AFVAGMVAFLWLLFPITRPDLYN 298 (314)
Q Consensus 276 ~~v~G~v~f~~~L~~lt~~~~y~ 298 (314)
..++++.++.++.+-+-+|+.|.
T Consensus 3 ~~~l~~~L~~YL~~aLl~PErF~ 25 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPERFX 25 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHHhcC
Confidence 45667778888888888888774
Done!