Query 021320
Match_columns 314
No_of_seqs 244 out of 1158
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mct_I Trypsin inhibitor A; co 36.3 10 0.00036 23.0 0.6 14 299-312 15-28 (28)
2 2ko5_A Ring finger protein Z; 18.1 43 0.0015 26.1 1.3 17 291-309 20-37 (99)
3 1lu0_A CMTI-I, trypsin inhibit 17.1 51 0.0017 20.1 1.1 14 299-312 15-29 (29)
4 1ans_A Neurotoxin III; NMR {An 15.8 47 0.0016 19.7 0.7 11 303-313 3-13 (27)
5 2po8_A Mcoti-II; oxidative fol 11.4 68 0.0023 20.1 0.6 14 299-312 13-27 (34)
6 2knp_A Mcocc-1; disulfide-rich 9.1 1.1E+02 0.0039 18.6 1.0 13 296-308 9-21 (33)
7 3s2r_A AT5G51720/MIO24_14; red 8.5 89 0.003 23.6 0.4 10 300-309 45-54 (83)
8 1rji_A BMKX, potassium channel 8.1 1.2E+02 0.0041 18.3 0.8 8 305-312 21-28 (31)
9 2j5h_A Teratocarcinoma-derived 7.8 1.2E+02 0.004 20.0 0.7 10 300-309 17-26 (41)
10 3fnv_A CDGSH iron sulfur domai 7.5 1.1E+02 0.0036 23.2 0.4 6 304-309 47-52 (83)
No 1
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=36.26 E-value=10 Score=22.98 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.8
Q ss_pred CCCCCccccccccc
Q 021320 299 DRTNNCRCLHGYCS 312 (314)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (314)
+=+..|.|..|||+
T Consensus 15 DCl~~C~C~~G~CG 28 (28)
T 1mct_I 15 DCMAKCICVAGHCG 28 (28)
T ss_dssp GSSTTCCEETTEEC
T ss_pred ccccCCEecccccC
Confidence 55778999999996
No 2
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=18.12 E-value=43 Score=26.12 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=12.3
Q ss_pred CCCCccccCCCCCc-ccccc
Q 021320 291 ITRPDLYNDRTNNC-RCLHG 309 (314)
Q Consensus 291 lt~~~~y~~~~~~~-~~~~~ 309 (314)
.-++++|+. -|| +||+.
T Consensus 20 ~~d~s~~G~--~nCKsCWf~ 37 (99)
T 2ko5_A 20 IPDATHLGP--QFCKSCWFE 37 (99)
T ss_dssp SSSCCCSCC--CCCCSSCSC
T ss_pred cCCccccCc--ccChhhccc
Confidence 346677766 799 89975
No 3
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=17.09 E-value=51 Score=20.11 Aligned_cols=14 Identities=50% Similarity=1.272 Sum_probs=10.8
Q ss_pred CCCCCccccc-cccc
Q 021320 299 DRTNNCRCLH-GYCS 312 (314)
Q Consensus 299 ~~~~~~~~~~-~~~~ 312 (314)
+=+..|.|.. |||+
T Consensus 15 DCl~~C~C~~~G~CG 29 (29)
T 1lu0_A 15 DCLAECVCLEHGYCG 29 (29)
T ss_dssp GSCTTCCBCTTSBBC
T ss_pred cccCCCEEccccccC
Confidence 4567888976 9996
No 4
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=15.77 E-value=47 Score=19.67 Aligned_cols=11 Identities=45% Similarity=1.458 Sum_probs=9.6
Q ss_pred CcccccccccC
Q 021320 303 NCRCLHGYCSW 313 (314)
Q Consensus 303 ~~~~~~~~~~~ 313 (314)
-|-||-|-|.|
T Consensus 3 CCPC~~~gCpW 13 (27)
T 1ans_A 3 CCPCYWGGCPW 13 (27)
T ss_dssp SCCSTTTTCSS
T ss_pred cccccccCCcc
Confidence 47999999998
No 5
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=11.40 E-value=68 Score=20.12 Aligned_cols=14 Identities=43% Similarity=1.094 Sum_probs=10.9
Q ss_pred CCCCCccccc-cccc
Q 021320 299 DRTNNCRCLH-GYCS 312 (314)
Q Consensus 299 ~~~~~~~~~~-~~~~ 312 (314)
+=+..|.|.. |||+
T Consensus 13 DCl~~CiC~~~G~CG 27 (34)
T 2po8_A 13 DCPGACICRGNGYCG 27 (34)
T ss_dssp GSCTTEEECTTSBEE
T ss_pred CcccCCeEccCcccc
Confidence 4567888976 9996
No 6
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.10 E-value=1.1e+02 Score=18.55 Aligned_cols=13 Identities=31% Similarity=0.853 Sum_probs=10.1
Q ss_pred cccCCCCCccccc
Q 021320 296 LYNDRTNNCRCLH 308 (314)
Q Consensus 296 ~y~~~~~~~~~~~ 308 (314)
+|.+--.+|+||.
T Consensus 9 lfrscgggcrcwp 21 (33)
T 2knp_A 9 LFRSCGGGCRCWP 21 (33)
T ss_dssp TTCCCCSSCCEEE
T ss_pred eeeccCCceeecc
Confidence 4666678899996
No 7
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=8.55 E-value=89 Score=23.60 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=6.9
Q ss_pred CCCCcccccc
Q 021320 300 RTNNCRCLHG 309 (314)
Q Consensus 300 ~~~~~~~~~~ 309 (314)
...-|+||++
T Consensus 45 ~~~~CrC~~S 54 (83)
T 3s2r_A 45 ITPYCRCWRS 54 (83)
T ss_dssp EEEECSSSCC
T ss_pred ceEEEecCCC
Confidence 3446899875
No 8
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=8.12 E-value=1.2e+02 Score=18.33 Aligned_cols=8 Identities=50% Similarity=1.518 Sum_probs=6.4
Q ss_pred cccccccc
Q 021320 305 RCLHGYCS 312 (314)
Q Consensus 305 ~~~~~~~~ 312 (314)
+|.|+||.
T Consensus 21 ~ck~~y~q 28 (31)
T 1rji_A 21 SCKNGYCQ 28 (31)
T ss_dssp CBCSSBBS
T ss_pred EEcceeec
Confidence 68888884
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=7.78 E-value=1.2e+02 Score=19.98 Aligned_cols=10 Identities=50% Similarity=1.321 Sum_probs=7.3
Q ss_pred CCCCcccccc
Q 021320 300 RTNNCRCLHG 309 (314)
Q Consensus 300 ~~~~~~~~~~ 309 (314)
.=..|+||+|
T Consensus 17 ~C~LCRC~~G 26 (41)
T 2j5h_A 17 KCSLCRCWHG 26 (41)
T ss_dssp CCCCCCCCSS
T ss_pred CceEEEeecC
Confidence 3457899987
No 10
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=7.49 E-value=1.1e+02 Score=23.21 Aligned_cols=6 Identities=50% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 021320 304 CRCLHG 309 (314)
Q Consensus 304 ~~~~~~ 309 (314)
|+||++
T Consensus 47 CrC~~S 52 (83)
T 3fnv_A 47 CRCWRS 52 (83)
T ss_dssp CSSSCC
T ss_pred EeCCCC
Done!