BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021321
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 159/248 (64%), Gaps = 22/248 (8%)
Query: 61 SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
+A + +LQ +E V+LFQE +PSVV I +L + ++ + + +++ V +G
Sbjct: 2 AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQD--AFTLDVLEVP------QG 53
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGFVWDK GHIVTNYHV+ G +V+L D + K+VG D D+
Sbjct: 54 SGSGFVWDKQGHIVTNYHVI-------RGASDLRVTLADQT----TFDAKVVGFDQDKDV 102
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPS-PNG 239
AVL++D +L+P+ +G S DL VGQ FAIGNP+G + TLTTGV+SGL REI S G
Sbjct: 103 AVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATG 162
Query: 240 RAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRT 299
R I+ IQTDAAIN GNSGGPL++S G +IG+NTA ++ +G SSGV F+IP+DTV
Sbjct: 163 RPIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSP--SGASSGVGFSIPVDTVGGI 220
Query: 300 VPYLIVYG 307
V L+ +G
Sbjct: 221 VDQLVRFG 228
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 125/235 (53%), Gaps = 27/235 (11%)
Query: 75 EDRVVQLFQETSPSVVSIQDLELSK----NP------KSTSSELMLVDGEYAKVEGTGSG 124
E +V + + +P+VV I ++ K +P K EL G +V GSG
Sbjct: 3 ESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELP--PGFERQVASLGSG 60
Query: 125 FVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLK 184
F++D G+I+TNYHVV G V++ D G + + +G D D+AV+K
Sbjct: 61 FIFDPEGYILTNYHVVG-------GADNITVTMLD----GSKYDAEYIGGDEELDIAVIK 109
Query: 185 VDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIR- 243
+ + + G S +++G+ AIGNP GF+ T+T GVVS R IP P+G
Sbjct: 110 IKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYV 169
Query: 244 GAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVR 298
G IQTDAAIN GNSGGPL+N G VIG+NTA + + + FAIPI+TV +
Sbjct: 170 GLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQE---AVNLGFAIPINTVKK 221
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 107/198 (54%), Gaps = 18/198 (9%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSG--LHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
GSG + G I+TN HV+A A G + V+ D + F +VG DP D
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFT----VVGADPTSD 88
Query: 180 LAVLKVD-VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSP- 237
+AV++V V G L P+ LG+S DLRVGQ AIG+P G E T+TTG+VS L R + +
Sbjct: 89 IAVVRVQGVSG--LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTG 146
Query: 238 ---NGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFT-----RKGTGLSSGVNF 289
N + AIQTDAAIN GNSGG L+N ++GVN+A T S G+ F
Sbjct: 147 EAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGF 206
Query: 290 AIPIDTVVRTVPYLIVYG 307
AIP+D R LI G
Sbjct: 207 AIPVDQAKRIADELISTG 224
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 24/180 (13%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D
Sbjct: 46 ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL---GREIPS 236
+A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+VS G+E+
Sbjct: 95 IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGL 153
Query: 237 PNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTV 296
N IQTDA IN GNSGGPL+N G VIG+NT T +G++FAIP D +
Sbjct: 154 RNSDM--DYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-------AGISFAIPSDKI 204
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 24/180 (13%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D
Sbjct: 46 ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL---GREIPS 236
+A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+VS G+E+
Sbjct: 95 IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGL 153
Query: 237 PNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTV 296
N IQTDA IN GN+GGPL+N G VIG+NT T +G++FAIP D +
Sbjct: 154 RNSDM--DYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-------AGISFAIPSDKI 204
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 122 GSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV D + + + ++S +G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVV-----DNATVIKVQLS------DGRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGR 240
A++++ L + + S LRVG AIGNP+G +T+T+G+VS LGR N
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAE 193
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
IQTDAAIN GNSGG L+N G +IG+NTA G + G+ FAIP + V
Sbjct: 194 NYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNMVKNLT 251
Query: 301 PYLIVYG 307
++ YG
Sbjct: 252 SQMVEYG 258
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 122 GSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV D + + + ++S +G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVV-----DNATVIKVQLS------DGRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGR 240
A++++ L + + S LRVG AIGNP+G +T+T+G+VS LGR N
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAE 193
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
IQTDAAIN GNSGG L+N G +IG+NTA G + G+ FAIP + V
Sbjct: 194 NYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNMVKNLT 251
Query: 301 PYLIVYG 307
++ YG
Sbjct: 252 SQMVEYG 258
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 24/182 (13%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D
Sbjct: 46 ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL---GREIPS 236
+A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+VS G+E+
Sbjct: 95 IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGL 153
Query: 237 PNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTV 296
N IQTDA IN GNSGGPL+N G VIG+NT T +G++FAIP D +
Sbjct: 154 RNSDM--DYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-------AGISFAIPSDKI 204
Query: 297 VR 298
+
Sbjct: 205 KK 206
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 122 GSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV D + + + ++S +G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVV-----DNATVIKVQLS------DGRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGR 240
A++++ L + + S LRVG AIGNP+G +T+T+G+VS LGR N
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAE 193
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
IQTDAAIN GN+GG L+N G +IG+NTA G + G+ FAIP + V
Sbjct: 194 NYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNMVKNLT 251
Query: 301 PYLIVYG 307
++ YG
Sbjct: 252 SQMVEYG 258
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 122 GSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV D + + + ++S +G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVV-----DNATVIKVQLS------DGRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGR 240
A++++ L + + S LRVG AIGNP+G +T+T+G+VS LGR N
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAE 193
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
IQTDAAIN GN+GG L+N G +IG+NTA G + G+ FAIP + V
Sbjct: 194 NYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNMVKNLT 251
Query: 301 PYLIVYG 307
++ YG
Sbjct: 252 SQMVEYG 258
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Query: 122 GSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
GSG + D G++VTN HVV D + + + ++S +G + KMVG DP D+
Sbjct: 88 GSGVIIDADKGYVVTNNHVV-----DNATVIKVQLS------DGRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGR 240
A++++ L + + S LRVG AIGNP+G +T+T+G+VS LGR N
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAE 193
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
IQTDAAIN GN+GG L+N G +IG+NTA G + G+ FAIP + V
Sbjct: 194 NYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNMVKNLT 251
Query: 301 PYLIVYG 307
++ YG
Sbjct: 252 SQMVEYG 258
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 104/179 (58%), Gaps = 24/179 (13%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
+GSGF+ + G IVTN HVV + HR KV L NG E K+ D D+
Sbjct: 64 SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 112
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL---GREIPSP 237
A++K+D +G +L ++LG S +LR G+ AIG+P+ ++T+TTG+VS G+E+
Sbjct: 113 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLR 171
Query: 238 NGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTV 296
N IQTDA IN GNSGGPL+N G VIG+NT T +G++FAIP D +
Sbjct: 172 NSDM--DYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-------AGISFAIPSDKI 221
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 36/231 (15%)
Query: 69 DELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWD 128
+ L+ + + + + ++ +P+VV I EL + + E+ + +GSGF+
Sbjct: 24 NSLRHKYNFIADVVEKIAPAVVHI---ELFRKLPFSKREVPV---------ASGSGFIVS 71
Query: 129 KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVE 188
+ G IVTN HVV + HR KV L NG E K+ D D+A++K+D +
Sbjct: 72 EDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADIALIKIDHQ 120
Query: 189 GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL---GREIPSPNGRAIRGA 245
G +L ++LG S +LR G+ AIG+P+ ++T+TTG+VS G+E+ N
Sbjct: 121 G-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDM--DY 177
Query: 246 IQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTV 296
IQTDA IN GN+GGPL+N G VIG+NT T +G++FAIP D +
Sbjct: 178 IQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-------AGISFAIPSDKI 221
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 27 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 73
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 74 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 123
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 124 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 181
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 182 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 227
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 193
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 194 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 239
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 11 RRAAPAVVNVYNRGLNTNSHNQ-----------LEIRTLGSGVIMDQRGYIITNKHVI-- 57
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 107
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 108 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 165
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 166 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINPGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 26/227 (11%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 10 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPL 261
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGAL 164
Query: 262 MNSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
+NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 165 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 106/198 (53%), Gaps = 23/198 (11%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE-----DTLTTGVVSGL 230
DLAVLK+D + LK +V+G S L VG AIGNP+G + T G+VS L
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 231 GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFA 290
R N + IQTDAAIN GNSGG L+N+ G +IG+NTA + G + G+ FA
Sbjct: 181 KRS--DLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNV--GIGFA 236
Query: 291 IPIDTVVRTVPYLIVYGT 308
IPI+ V +I +G+
Sbjct: 237 IPINMVKDVAQQIIKFGS 254
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 106/198 (53%), Gaps = 23/198 (11%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE-----DTLTTGVVSGL 230
DLAVLK+D + LK +V+G S L VG AIGNP+G + T G+VS L
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 231 GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFA 290
R N + IQTDAAIN GNSGG L+N+ G +IG+NTA + G + G+ FA
Sbjct: 181 KRS--DLNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNV--GIGFA 236
Query: 291 IPIDTVVRTVPYLIVYGT 308
IPI+ V +I +G+
Sbjct: 237 IPINMVKDVAQQIIKFGS 254
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GN GG L+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNXGGALV 193
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 194 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 239
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GN GG L+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNXGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY +T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPYNLGQVITQGIISATGRIGLNPTGR--QNFLQTDASINPGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 26/227 (11%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 36 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 83
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 132
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPL 261
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GN GG L
Sbjct: 133 VPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINPGNXGGAL 190
Query: 262 MNSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
+NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + + TDA+IN GNSGG L+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLATDASINHGNSGGALV 193
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 194 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 239
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIXDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 193
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G + G+NT +F + G + G+ FAIP + LI G
Sbjct: 194 NSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDG 239
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 23/198 (11%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE-----DTLTTGVVSGL 230
DLAVLK+D + LK +V+G S L VG AIGNP+G + T G+VS L
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 231 GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFA 290
R N + IQTDAAIN GN+GG L+N+ G +IG+NTA + G + G+ FA
Sbjct: 181 KRS--DLNIEGVENFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNV--GIGFA 236
Query: 291 IPIDTVVRTVPYLIVYGT 308
IPI+ V +I +G+
Sbjct: 237 IPINMVKDVAQQIIKFGS 254
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + + TDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLATDASINHGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 39 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 86 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S G +P GR + +QTDA+IN GNSGG L+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGIISATGAIGLNPTGR--QNFLQTDASINHGNSGGALV 193
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 194 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 239
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S G +P GR + +QTDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGIISATGAIGLNPTGR--QNFLQTDASINHGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K GSG + D G++VTN HVV KV L D G + K VG D
Sbjct: 83 KFXALGSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKD 131
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIP 235
P D+A++++ L + S LRVG AIGNP+G +T+T+G+VS LGR
Sbjct: 132 PRSDIALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS-- 188
Query: 236 SPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT 295
N IQTDAAIN GNSGG L+N G +IG+NTA G + G+ FAIP +
Sbjct: 189 GLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNX 246
Query: 296 VVRTVPYLIVYG 307
V + YG
Sbjct: 247 VKNLTSQXVEYG 258
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 26/227 (11%)
Query: 82 FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 10 VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIXDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 58 ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPL 261
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGAL 164
Query: 262 MNSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
+NS G + G+NT +F + G + G+ FAIP + LI G
Sbjct: 165 VNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDG 211
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNP T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++ GSG + D+ G+I+TN HV+
Sbjct: 37 RRAAPAVVNVYNRGLNTNSHN-----------QLEIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVLK++ G L + +
Sbjct: 84 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNP T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINPGNSGGALV 191
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 237
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K GSG + D G++VTN HVV KV L D G + K VG D
Sbjct: 83 KFXALGSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKD 131
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIP 235
P D+A++++ L + S LRVG AIGNP+G +T+T+G+VS LGR
Sbjct: 132 PRSDIALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS-- 188
Query: 236 SPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT 295
N IQTDAAIN GN+GG L+N G +IG+NTA G + G+ FAIP +
Sbjct: 189 GLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNX 246
Query: 296 VVRTVPYLIVYG 307
V + YG
Sbjct: 247 VKNLTSQXVEYG 258
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K GSG + D G++VTN HVV KV L D G + K VG D
Sbjct: 83 KFXALGSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKD 131
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIP 235
P D+A++++ L + S LRVG AIGNP+G +T+T+G+VS LGR
Sbjct: 132 PRSDIALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS-- 188
Query: 236 SPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT 295
N IQTDAAIN GN+GG L+N G +IG+NTA G + G+ FAIP +
Sbjct: 189 GLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIGFAIPSNX 246
Query: 296 VVRTVPYLIVYG 307
V + YG
Sbjct: 247 VKNLTSQXVEYG 258
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
+ +P+VV++ + L+ N + ++L ++ GSG + D+ G+I+TN HV+
Sbjct: 16 RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 62
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
+ + V+L D G E +VG D DLAVL + G L + +
Sbjct: 63 -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLIIKATG-GLPTIPINARRV 112
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLM 262
+G AIGNPY T+T G++S GR +P GR + +QTDA+IN GNSGG L+
Sbjct: 113 PHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGR--QNFLQTDASINHGNSGGALV 170
Query: 263 NSFGHVIGVNTATFTRKGTGLS-SGVNFAIPIDTVVRTVPYLIVYG 307
NS G ++G+NT +F + G + G+ FAIP + + LI G
Sbjct: 171 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 216
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 23/198 (11%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
K E GSG + D G I+TN HV+ + T V+L D G + +++G D
Sbjct: 74 KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE-----DTLTTGVVSGL 230
DLAVLK+D + LK +V+G S L VG AIGNP+G + T G+VS L
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 231 GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFA 290
R N + IQTDAAI GNSGG L+N+ G +IG+NTA + G + G+ FA
Sbjct: 181 KRS--DLNIEGVENFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNV--GIGFA 236
Query: 291 IPIDTVVRTVPYLIVYGT 308
IPI+ V +I +G+
Sbjct: 237 IPINMVKDVAQQIIKFGS 254
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 81 LFQETSPSVVSIQDLELSKNPKSTSSELM------LVDGEYAKVEGTGSGFVWDKF-GHI 133
+ ++ P+VVS++ + + E L D EG GSG + + G++
Sbjct: 18 MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYV 77
Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
+TN HV+ + + + L D G + K++G D D+A+L++ +L
Sbjct: 78 LTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQSDIALLQIQ-NPSKLT 125
Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAIN 253
+ + S LRVG A+GNP+G T T+G+VS LGR N + IQTDA+IN
Sbjct: 126 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLEGLENFIQTDASIN 183
Query: 254 SGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTVPYLIVYG 307
GNSGG L+N G +IG+NTA G S G+ FAIP + LI +G
Sbjct: 184 RGNSGGALLNLNGELIGINTAILAPGGG--SVGIGFAIPSNMARTLAQQLIDFG 235
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 81 LFQETSPSVVSIQDLELSKNPKSTSSELM------LVDGEYAKVEGTGSGFVWDKF-GHI 133
+ ++ P+VVS++ + + E L D EG GSG + + G++
Sbjct: 18 MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYV 77
Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
+TN HV+ + + + L D G + K++G D D+A+L++ +L
Sbjct: 78 LTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQSDIALLQIQNPS-KLT 125
Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAIN 253
+ + S LRVG A+GNP+G T T+G+VS LGR N + IQTDA+IN
Sbjct: 126 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLEGLENFIQTDASIN 183
Query: 254 SGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTVPYLIVYG 307
GNSGG L+N G +IG+NTA G S G+ FAIP + LI +G
Sbjct: 184 RGNSGGALLNLNGELIGINTAILAPGGG--SVGIGFAIPSNMARTLAQQLIDFG 235
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 81 LFQETSPSVVSIQDLELSKNPKSTSSELM------LVDGEYAKVEGTGSGFVWDKF-GHI 133
+ ++ P+VVS++ + + E L D EG GSG + + G++
Sbjct: 18 MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYV 77
Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
+TN HV+ + + + L D G + K++G D D+A+L++ +L
Sbjct: 78 LTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQSDIALLQIQ-NPSKLT 125
Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAIN 253
+ + S LRVG A+GNP+G T T+G+VS LGR N + IQTDA+IN
Sbjct: 126 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLEGLENFIQTDASIN 183
Query: 254 SGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTVPYLIVYG 307
GN+GG L+N G +IG+NTA G S G+ FAIP + LI +G
Sbjct: 184 RGNAGGALLNLNGELIGINTAILAPGGG--SVGIGFAIPSNMARTLAQQLIDFG 235
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 92/178 (51%), Gaps = 28/178 (15%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
GSGFV G IVTN HVVA L +G E + DP D+A
Sbjct: 49 GSGFVVAADGLIVTNAHVVADRRRVRVRLL-----------SGDTYEAVVTAVDPVADIA 97
Query: 182 VLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGRE-----IPS 236
L++ + L + LG S D+R G+ A+G+P+ ++T+T+G+VS R +P
Sbjct: 98 TLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQ 156
Query: 237 PNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPID 294
N I QTDAAI+ GN+GGPL+N G VIGVNT T +G++FAIP D
Sbjct: 157 TNVEYI----QTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-------AGISFAIPSD 203
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 24/181 (13%)
Query: 121 TGSGFVWDKFGHIVTNYHVV---AKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
TGS F+ G ++TN H V ++ G R V+ +G V CD
Sbjct: 75 TGSAFMIGD-GKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRG---------VDCD-- 122
Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFED-TLTTGVVSGLGREIPS 236
+A+L V+ E F L H R+ S +G P G + ++T GVVS + E+ S
Sbjct: 123 --IALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVVSRI--EVTS 178
Query: 237 -PNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT 295
+G + IQ DAAIN GNSGGP N G IGV + + T + + IP
Sbjct: 179 YAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEET---ENIGYVIPTTV 235
Query: 296 V 296
V
Sbjct: 236 V 236
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 123 SGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA-YDLA 181
+GFV K I+TN HV + D R KGNG + K + P D++
Sbjct: 26 TGFVIGK-NTIITNKHV----SKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDIS 80
Query: 182 VLKVDVEGFELKP---------VVLGTSHDLRVGQSCFAIGNPY----GFEDTLTTGVVS 228
V+ ++ + E P + D +V IG P F+ +TG +
Sbjct: 81 VMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIK 140
Query: 229 GLGREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVN 288
+ I + DA I GNSG P++NS VIGV + G+ + V
Sbjct: 141 RIKDNI-----------LNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVY 189
Query: 289 FAIPIDTVVR 298
F I ++
Sbjct: 190 FTPQIKDFIQ 199
>pdb|3URE|A Chain A, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
pdb|3URE|B Chain B, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
Length = 198
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG IQ +A + G+SGG L+ S G IGV + G S+G N IP
Sbjct: 127 AVRGLIQGNACMGRGDSGGSLITSAGQAIGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GHV+G+ A TR G++ V+F IP++++ T+
Sbjct: 138 GSSGGPLLCPSGHVVGIFKAAVCTR---GVAKAVDF-IPVESMETTM 180
>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
Length = 186
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GHV+G+ A TR G++ V+F IP++++ T+
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTR---GVAKAVDF-IPVESMETTM 179
>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
Length = 187
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GHV+G+ A TR G++ V+F IP++++ T+
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTR---GVAKAVDF-IPVESMETTM 180
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNG-FYREGKMVGCDPAYD 179
+ +GFV K I+TN HV R KGNG Y K++ D
Sbjct: 23 SATGFVVGK-NTILTNKHVSKNYKVGD----RITAHPNSDKGNGGIYSIKKIINYPGKED 77
Query: 180 LAVLKVDVEGFELKPVVLGTSHDL---------RVGQSCFAIGNPYGFEDTLTTGVVSGL 230
++V++V+ E P + ++ + G+ IG P+ +++ +G
Sbjct: 78 VSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTG- 136
Query: 231 GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTAT 275
+ S G +I + T+ SGNSG P++NS ++G++ A+
Sbjct: 137 --PVMSVEGSSIVYSAHTE----SGNSGSPVLNSNNELVGIHFAS 175
>pdb|3SV9|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN
COMPLEX WITH Telaprevir
Length = 203
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ TA TR G++ V+F IP++++ T
Sbjct: 144 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRTAVSTR---GVAKAVDF-IPVESLETT 199
Query: 300 V 300
+
Sbjct: 200 M 200
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 55/154 (35%), Gaps = 34/154 (22%)
Query: 133 IVTNYHVVAK---LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVD--- 186
IVTN H+ S H K KG G Y +V DLA++ V
Sbjct: 34 IVTNKHIAKSNDIFKNRVSAHHSSK-----GKGGGNYDVKDIVEYPGKEDLAIVHVHETS 88
Query: 187 VEGFELKPVVLGT--SHDLRVGQSCFAIGNPYG-------FEDTLTTGVVSGLGREIPSP 237
EG V T + +V IG P G FE T T +SG E
Sbjct: 89 TEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTFMEF--- 145
Query: 238 NGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGV 271
DA GNSG P++NS +IG+
Sbjct: 146 -----------DAYAQPGNSGSPVLNSKHELIGI 168
>pdb|1DY8|A Chain A, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY8|B Chain B, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY9|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DY9|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DXP|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1DXP|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1W3C|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|1W3C|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|3OYP|A Chain A, Hcv Ns34A IN COMPLEX WITH LIGAND 3
pdb|3OYP|B Chain B, Hcv Ns34A IN COMPLEX WITH LIGAND 3
Length = 187
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GHV+G+ A TR G++ V+F IP++++ T+
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTR---GVAKAVDF-IPVESMETTM 179
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 78 VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVD-----GEYAKV-EGTGSGFVWDKFG 131
V++ F T V+ D L NP ++E +V KV EGTG D+
Sbjct: 12 VLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIRSLAPRCQKVLEGTGFVISPDR-- 69
Query: 132 HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEG-- 189
++TN HVVA G + V D E +V DP+ D+A+L V
Sbjct: 70 -VMTNAHVVA-------GSNNVTVYAGDKP-----FEATVVSYDPSVDVAILAVPHLPPP 116
Query: 190 ---FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL----GREI---PSPNG 239
F +P + G +G P G T T + G +I P P
Sbjct: 117 PLVFAAEPA--------KTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVT 168
Query: 240 RAIRGAIQTDAAINSGNSGGPLMNSFGHVIGV 271
R + I+ D + G+SGGPL++ G V+GV
Sbjct: 169 RDVY-TIRAD--VEQGDSGGPLIDLNGQVLGV 197
>pdb|3SV7|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Telaprevir
pdb|3SUE|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|C Chain C, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|D Chain D, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
Length = 203
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
RG++ + I+ G+SGGPL+ GH +G+ A + + G++ V+F IP++++ T+
Sbjct: 144 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFKAAVSTR--GVAKAVDF-IPVESLETTM 200
>pdb|3SV6|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
TELAPREVIR
Length = 203
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
RG++ + I+ G+SGGPL+ GH +G+ A + + G++ V+F IP++++ T+
Sbjct: 144 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVSTR--GVAKAVDF-IPVESLETTM 200
>pdb|3SU2|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN
COMPLEX WITH Danoprevir
pdb|3SU6|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN
COMPLEX WITH Vaniprevir
pdb|3SUG|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT A156T IN
COMPLEX WITH MK- 5172
Length = 203
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G++GGPL+ GH +G+ TA TR G++ V+F IP++++ T+
Sbjct: 158 GSAGGPLLCPAGHAVGIFRTAVSTR---GVAKAVDF-IPVESLETTM 200
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 74 EEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHI 133
+ + L+ +S S + D+++++ +S+++ + DG + G+GSG V++K G +
Sbjct: 245 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT---MSDGRVFTIGGSGSGGVFEKNGEV 301
Query: 134 VT----------NYHVVAKLATDTSGLHRC--KVSLFDAKGNGFYREGKMVGCDPAY 178
+ N V L D GL+R LF K ++ G + Y
Sbjct: 302 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 358
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGF-----YREGKMVGCDP---AYDLAVLK 184
IVTNYHV + A + S + DA+ N F E + + P DLA++K
Sbjct: 59 IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIK 118
Query: 185 V------DVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPN 238
+ + G ++P + D++ G +G PY + S +I N
Sbjct: 119 LKPNEKGESAGDLIQPANIPDHIDIQKGDKYSLLGYPYNY------SAYSLYQSQIEMFN 172
Query: 239 GRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTA 274
G + GNSG + N G +IG+++
Sbjct: 173 DSQYFGYTEV------GNSGSGIFNLKGELIGIHSG 202
>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GHV+G+ A TR G++ V F IP++++ T+
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTR---GVAKAVVF-IPVESMETTM 180
>pdb|1JXP|A Chain A, Bk Strain Hepatitis C Virus (Hcv) Ns3-Ns4a
pdb|1JXP|B Chain B, Bk Strain Hepatitis C Virus (Hcv) Ns3-Ns4a
pdb|1DXW|A Chain A, Structure Of Hetero Complex Of Non Structural Protein (Ns)
Of Hepatitis C Virus (Hcv) And Synthetic Peptidic
Compound
pdb|1BT7|A Chain A, The Solution Nmr Structure Of The N-Terminal Protease
Domain Of The Hepatitis C Virus (Hcv) Ns3-Protein, From
Bk Strain, 20 Structures
pdb|2K1Q|A Chain A, Nmr Structure Of Hepatitis C Virus Ns3 Serine Protease
Complexed With The Non-Covalently Bound Phenethylamide
Inhibitor
Length = 186
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A TR G++ V+F +P++++ T+
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTR---GVAKAVDF-VPVESMETTM 179
>pdb|3SU0|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Danoprevir
Length = 198
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G++GGPL+ GH +G+ A + + G++ V+F IP++++ T+
Sbjct: 155 GSAGGPLLCPAGHAVGIFKAAVSTR--GVAKAVDF-IPVESLETTM 197
>pdb|1NS3|A Chain A, Structure Of Hcv Protease (Bk Strain)
pdb|1NS3|B Chain B, Structure Of Hcv Protease (Bk Strain)
Length = 186
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A TR G++ V+F +P++++ T+
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTR---GVAKAVDF-VPVESMETTM 179
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 30/177 (16%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLF-DAKGNGFYREGKMVGCDPAYDLAVLKVDVE--- 188
++TN HVV D L ++ D NG + ++ DLA++K
Sbjct: 46 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 105
Query: 189 ---GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLT----TGVVSGLGREIPSPNGRA 241
G +KP + + + +V Q+ G P G + T G ++ L E
Sbjct: 106 KHIGEVVKPATMSNNAETQVNQNITVTGYP-GDKPVATMWESKGKITYLKGE-------- 156
Query: 242 IRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVR 298
A+Q D + GNSG P+ N VIG++ G+ + N A+ I+ VR
Sbjct: 157 ---AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG-------GVPNEFNGAVFINENVR 203
>pdb|3SU4|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Vaniprevir
pdb|3SU4|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Vaniprevir
Length = 203
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G++GGPL+ GH +G+ A + + G++ V+F IP++++ T+
Sbjct: 158 GSAGGPLLCPAGHAVGIFKAAVSTR--GVAKAVDF-IPVESLETTM 200
>pdb|3M5L|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
ITMN-191
pdb|3M5M|A Chain A, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5M|B Chain B, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5N|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|C Chain C, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|D Chain D, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5O|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3M5O|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3RC4|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC5|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC6|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3SU3|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
VANIPREVIR
pdb|3SUD|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|B Chain B, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|C Chain C, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|D Chain D, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
Length = 203
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G++GGPL+ GH +G+ A + + G++ V+F IP++++ T+
Sbjct: 158 GSAGGPLLCPAGHAVGIFRAAVSTR--GVAKAVDF-IPVESLETTM 200
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + G++ V+F +P++++ T+
Sbjct: 151 GSSGGPLLCPSGHAVGIFRAAVCTR--GVAKAVDF-VPVESMETTM 193
>pdb|3SV8|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Telaprevir
Length = 203
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + + G++ V F IP++++ T+
Sbjct: 158 GSSGGPLLCPAGHAVGIFRAAVSTR--GVAKAVAF-IPVESLETTM 200
>pdb|3KEE|A Chain A, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|B Chain B, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|C Chain C, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|D Chain D, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
Length = 190
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A TR G++ V+F +P++++ T+
Sbjct: 138 GSSGGPLLCPSGHAVGIFRAAVCTR---GVAKAVDF-VPVESMETTM 180
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + G++ V+F +P++++ T+
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTR--GVAKAVDF-VPVESMETTM 214
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + G++ V+F +P++++ T+
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTR--GVAKAVDF-VPVESMETTM 214
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + G++ V+F +P++++ T+
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTR--GVAKAVDF-VPVESMETTM 214
>pdb|2QV1|A Chain A, Crystal Structure Of Hcv Ns3-4a V36m Mutant
pdb|2QV1|B Chain B, Crystal Structure Of Hcv Ns3-4a V36m Mutant
Length = 181
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 123 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 178
Query: 300 V 300
+
Sbjct: 179 M 179
>pdb|2P59|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3.4a Protease
pdb|2P59|B Chain B, Crystal Structure Of Hepatitis C Virus Ns3.4a Protease
Length = 181
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 123 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 178
Query: 300 V 300
+
Sbjct: 179 M 179
>pdb|3SUF|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|C Chain C, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|D Chain D, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
Length = 203
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V F IP++++ T
Sbjct: 144 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTR---GVAKAVAF-IPVESLETT 199
Query: 300 V 300
+
Sbjct: 200 M 200
>pdb|1A1Q|A Chain A, Hepatitis C Virus Ns3 Proteinase
pdb|1A1Q|B Chain B, Hepatitis C Virus Ns3 Proteinase
pdb|1A1Q|C Chain C, Hepatitis C Virus Ns3 Proteinase
Length = 189
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A TR G++ V+F +P++++ T+
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTR---GVAKAVDF-VPVESMETTM 179
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 36/162 (22%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
G+GFV ++TN HVVA G + V D E +V DP+ D+A
Sbjct: 42 GTGFVISP-DRVMTNAHVVA-------GSNNVTVYAGDKP-----FEATVVSYDPSVDVA 88
Query: 182 VLKVDVEG-----FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL----GR 232
+L V F +P + G +G P G T T + G
Sbjct: 89 ILAVPHLPPPPLVFAAEPA--------KTGADVVVLGYPGGGNFTATPARIREAIRLSGP 140
Query: 233 EI---PSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGV 271
+I P P R + I+ D + G+SGGPL++ G V+GV
Sbjct: 141 DIYGDPEPVTRDVY-TIRAD--VEQGDSGGPLIDLNGQVLGV 179
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A + G++ V+F +P++++ T+
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTR--GVAKAVDF-VPVESMETTM 214
>pdb|2OIN|A Chain A, Crystal Structure Of Hcv Ns3-4a R155k Muntant
pdb|2OIN|B Chain B, Crystal Structure Of Hcv Ns3-4a R155k Muntant
Length = 200
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 134 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFKAAVCTR---GVAKAVDF-IPVENLETT 189
Query: 300 V 300
+
Sbjct: 190 M 190
>pdb|3VSK|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSK|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSL|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form.
pdb|3VSL|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form
Length = 646
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 61 SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
S I Q DEL ++ +V+ +F+E + V D ++ KN + E V + +K+ G
Sbjct: 119 SKIRKSQLDELSSKDLQVLAIFREMNAGTVL--DPQMIKNEDVSEKEYAAVSQQLSKLPG 176
Query: 121 TGSGFVWDK 129
+ WD+
Sbjct: 177 VNTSMDWDR 185
>pdb|2FM2|A Chain A, Hcv Ns3-4a Protease Domain Complexed With A Ketoamide
Inhibitor, Sch446211
pdb|2FM2|C Chain C, Hcv Ns3-4a Protease Domain Complexed With A Ketoamide
Inhibitor, Sch446211
pdb|2A4G|A Chain A, Hepatitis C Protease Ns3-4a Serine Protease With Ketoamide
Inhibitor Sch225724 Bound
pdb|2A4G|C Chain C, Hepatitis C Protease Ns3-4a Serine Protease With Ketoamide
Inhibitor Sch225724 Bound
pdb|2A4Q|A Chain A, Hcv Ns3 Protease With Ns4a Peptide And A Covalently Bound
Macrocyclic Ketoamide Compound.
pdb|2A4Q|C Chain C, Hcv Ns3 Protease With Ns4a Peptide And A Covalently Bound
Macrocyclic Ketoamide Compound.
pdb|2A4R|A Chain A, Hcv Ns3 Protease Domain With A Ketoamide Inhibitor
Covalently Bound.
pdb|2A4R|C Chain C, Hcv Ns3 Protease Domain With A Ketoamide Inhibitor
Covalently Bound.
pdb|2OBO|A Chain A, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch476776
pdb|2OBO|C Chain C, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch476776
pdb|2OBQ|A Chain A, Discovery Of The Hcv Ns34A PROTEASE INHIBITOR SCH503034.
KEY STEPS IN Structure-Based Optimization
pdb|2OBQ|C Chain C, Discovery Of The Hcv Ns34A PROTEASE INHIBITOR SCH503034.
KEY STEPS IN Structure-Based Optimization
pdb|2OC0|A Chain A, Structure Of Ns3 Complexed With A Ketoamide Inhibitor
Sch491762
pdb|2OC0|C Chain C, Structure Of Ns3 Complexed With A Ketoamide Inhibitor
Sch491762
pdb|2OC1|A Chain A, Structure Of The Hcv Ns34A PROTEASE INHIBITOR CVS4819
pdb|2OC1|C Chain C, Structure Of The Hcv Ns34A PROTEASE INHIBITOR CVS4819
pdb|2OC7|A Chain A, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch571696
pdb|2OC7|C Chain C, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch571696
pdb|2OC8|A Chain A, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch503034
pdb|2OC8|C Chain C, Structure Of Hepatitis C Viral Ns3 Protease Domain
Complexed With Ns4a Peptide And Ketoamide Sch503034
pdb|3EYD|A Chain A, Structure Of Hcv Ns3-4a Protease With An Inhibitor Derived
From A Boronic Acid
pdb|3EYD|C Chain C, Structure Of Hcv Ns3-4a Protease With An Inhibitor Derived
From A Boronic Acid
pdb|3KN2|A Chain A, Hcv Ns3 Protease Domain With Ketoamide Inhibitor
pdb|3KN2|C Chain C, Hcv Ns3 Protease Domain With Ketoamide Inhibitor
pdb|3KF2|A Chain A, The Hcv Ns3NS4A PROTEASE APO STRUCTURE
pdb|3KF2|B Chain B, The Hcv Ns3NS4A PROTEASE APO STRUCTURE
pdb|3KNX|A Chain A, Hcv Ns3 Protease Domain With P1-P3 Macrocyclic Ketoamide
Inhibitor
pdb|3KNX|C Chain C, Hcv Ns3 Protease Domain With P1-P3 Macrocyclic Ketoamide
Inhibitor
pdb|3LON|A Chain A, Hcv Ns3-4a Protease Domain With Ketoamide Inhibitor
Narlaprevir
pdb|3LON|C Chain C, Hcv Ns3-4a Protease Domain With Ketoamide Inhibitor
Narlaprevir
pdb|3LOX|A Chain A, Hcv Ns3-4a Protease Domain With A Ketoamide Inhibitor
Derivative Of Boceprevir Bound
pdb|3LOX|C Chain C, Hcv Ns3-4a Protease Domain With A Ketoamide Inhibitor
Derivative Of Boceprevir Bound
Length = 200
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 134 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 189
Query: 300 V 300
+
Sbjct: 190 M 190
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGF-----YREGKMVGCDP---AYDLAVLK 184
IVTNYHV + A + S + DA+ N F E + + P DLA++K
Sbjct: 60 IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIK 119
Query: 185 V------DVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGLGREIPSPN 238
+ + G ++P + D+ G +G PY + S +I N
Sbjct: 120 LKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY------SAYSLYQSQIEMFN 173
Query: 239 GRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNT 273
G + GNSG + N G +IG+++
Sbjct: 174 DSQYFGYTEV------GNSGSGIFNLKGELIGIHS 202
>pdb|1RGQ|A Chain A, M9a Hcv Protease Complex With Pentapeptide Keto-Amide
Inhibitor
pdb|1RGQ|B Chain B, M9a Hcv Protease Complex With Pentapeptide Keto-Amide
Inhibitor
pdb|1RTL|A Chain A, Crystal Structure Of Hcv Ns3 Protease Domain: Ns4a Peptide
Complex With Covalently Bound
Pyrrolidine-5,5-Translactam Inhibitor
pdb|1RTL|B Chain B, Crystal Structure Of Hcv Ns3 Protease Domain: Ns4a Peptide
Complex With Covalently Bound
Pyrrolidine-5,5-Translactam Inhibitor
Length = 200
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 134 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVTKAVDF-IPVENLETT 189
Query: 300 V 300
+
Sbjct: 190 M 190
>pdb|2XCN|A Chain A, Crystal Structure Of Hcv Ns3 Protease With A Boronate
Inhibitor
pdb|2XCN|B Chain B, Crystal Structure Of Hcv Ns3 Protease With A Boronate
Inhibitor
pdb|2XNI|A Chain A, Protein-Ligand Complex Of A Novel Macrocyclic Hcv Ns3
Protease Inhibitor Derived From Amino Cyclic Boronates
pdb|2XNI|B Chain B, Protein-Ligand Complex Of A Novel Macrocyclic Hcv Ns3
Protease Inhibitor Derived From Amino Cyclic Boronates
Length = 198
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 133 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 188
Query: 300 V 300
+
Sbjct: 189 M 189
>pdb|2F9U|A Chain A, Hcv Ns3 Protease Domain With Ns4a Peptide And A Ketoamide
Inhibitor With A P2 Norborane
pdb|2F9U|C Chain C, Hcv Ns3 Protease Domain With Ns4a Peptide And A Ketoamide
Inhibitor With A P2 Norborane
pdb|2GVF|A Chain A, Hcv Ns3-4a Protease Domain Complexed With A Macrocyclic
Ketoamide Inhibitor, Sch419021
pdb|2GVF|C Chain C, Hcv Ns3-4a Protease Domain Complexed With A Macrocyclic
Ketoamide Inhibitor, Sch419021
Length = 199
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 133 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 188
Query: 300 V 300
+
Sbjct: 189 M 189
>pdb|2F9V|A Chain A, Hcv Ns3 Protease Domain With Ns4a Peptide And A Ketoamide
Inhibitor With P1 And P2 Cyclopropylalannines
pdb|2F9V|C Chain C, Hcv Ns3 Protease Domain With Ns4a Peptide And A Ketoamide
Inhibitor With P1 And P2 Cyclopropylalannines
Length = 201
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 135 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 190
Query: 300 V 300
+
Sbjct: 191 M 191
>pdb|1N1L|A Chain A, Crystal Structure Of Hcv Ns3 Protease Domain:ns4a Peptide
Complex With Covalently Bound Inhibitor (Gw472467x)
pdb|1N1L|B Chain B, Crystal Structure Of Hcv Ns3 Protease Domain:ns4a Peptide
Complex With Covalently Bound Inhibitor (Gw472467x)
Length = 198
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 133 RGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTR---GVTKAVDF-IPVENLETT 188
Query: 300 V 300
+
Sbjct: 189 M 189
>pdb|4A1T|A Chain A, Co-Complex Of The Of Ns3-4a Protease With The Inhibitory
Peptide Cp5-46-A (In-House Data)
pdb|4A1T|B Chain B, Co-Complex Of The Of Ns3-4a Protease With The Inhibitory
Peptide Cp5-46-A (In-House Data)
pdb|4A1V|A Chain A, Co-Complex Structure Of Ns3-4a Protease With The Optimized
Inhibitory Peptide Cp5-46a-4d5e
pdb|4A1V|B Chain B, Co-Complex Structure Of Ns3-4a Protease With The Optimized
Inhibitory Peptide Cp5-46a-4d5e
pdb|4A1X|A Chain A, Co-Complex Structure Of Ns3-4a Protease With The
Inhibitory Peptide Cp5-46-A (Synchrotron Data)
pdb|4A1X|B Chain B, Co-Complex Structure Of Ns3-4a Protease With The
Inhibitory Peptide Cp5-46-A (Synchrotron Data)
Length = 203
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 255 GNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G+SGGPL+ GH +G+ A TR G++ V+F +P++++ T+
Sbjct: 152 GSSGGPLLCPSGHAVGIFRAAVCTR---GVAKAVDF-VPVESMETTM 194
>pdb|1A1R|B Chain B, Hcv Ns3 Protease Domain:ns4a Peptide Complex
pdb|1A1R|A Chain A, Hcv Ns3 Protease Domain:ns4a Peptide Complex
Length = 198
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G+SGGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 133 RGSLLSPRPISYLKGSSGGPLLCPTGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 188
Query: 300 V 300
+
Sbjct: 189 M 189
>pdb|3SU1|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Danoprevir
pdb|3SU5|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Vaniprevir
Length = 203
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 255 GNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVRTV 300
G++GGPL+ GH +G+ A + + G++ V F IP++++ T+
Sbjct: 158 GSAGGPLLCPAGHAVGIFRAAVSTR--GVAKAVAF-IPVESLETTM 200
>pdb|1QQ4|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S
pdb|1QRW|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S, PH 8
Length = 198
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q++A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQSNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 36/162 (22%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
G+GFV ++TN HVVA G + V D E +V DP+ D+A
Sbjct: 40 GTGFVISP-DRVMTNAHVVA-------GSNNVTVYAGDKP-----FEATVVSYDPSVDVA 86
Query: 182 VLKVDVEG-----FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVVSGL----GR 232
+L V F +P + G +G P G T T + G
Sbjct: 87 ILAVPHLPPPPLVFAAEPA--------KTGADVVVLGYPGGGNFTATPARIREAIRLSGP 138
Query: 233 EI---PSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGV 271
+I P P R + I+ D + G++GGPL++ G V+GV
Sbjct: 139 DIYGDPEPVTRDVY-TIRAD--VEQGDAGGPLIDLNGQVLGV 177
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 39/139 (28%)
Query: 179 DLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGF--------EDTLTT 224
DLA++++ + G ++ P +GTS+DL+ G IG P+ E LTT
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELTT 179
Query: 225 GVVSGL---GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGT 281
+ GL G +P GNSG + NS G ++G++++ +
Sbjct: 180 -LSRGLRYYGFTVP-------------------GNSGSGIFNSNGELVGIHSSKVSH--L 217
Query: 282 GLSSGVNFAIPIDTVVRTV 300
+N+ + I V+ +
Sbjct: 218 DREHQINYGVGIGNYVKRI 236
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 30/177 (16%)
Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLF-DAKGNGFYREGKMVGCDPAYDLAVLKVDVE--- 188
++TN HVV D L ++ D NG + ++ DLA++K
Sbjct: 46 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 105
Query: 189 ---GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLT----TGVVSGLGREIPSPNGRA 241
G +KP + + + + Q+ G P G + T G ++ L E
Sbjct: 106 KHIGEVVKPATMSNNAETQTNQNITVTGYP-GDKPVATMWESKGKITYLKGE-------- 156
Query: 242 IRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDTVVR 298
A+Q D + GNSG P+ N VIG++ G+ + N A+ I+ VR
Sbjct: 157 ---AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG-------GVPNEFNGAVFINENVR 203
>pdb|2O8M|A Chain A, Crystal Structure Of The S139a Mutant Of Hepatitis C Virus
Ns34A PROTEASE
pdb|2O8M|B Chain B, Crystal Structure Of The S139a Mutant Of Hepatitis C Virus
Ns34A PROTEASE
Length = 200
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G++GGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 134 RGSLLSPRPISYLKGSAGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 189
Query: 300 V 300
+
Sbjct: 190 M 190
>pdb|2XCF|A Chain A, Crystal Structure Of Hcv Ns3 Protease With A Boronate
Inhibitor
pdb|2XCF|B Chain B, Crystal Structure Of Hcv Ns3 Protease With A Boronate
Inhibitor
Length = 198
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 243 RGAIQTDAAIN--SGNSGGPLMNSFGHVIGV-NTATFTRKGTGLSSGVNFAIPIDTVVRT 299
RG++ + I+ G++GGPL+ GH +G+ A TR G++ V+F IP++ + T
Sbjct: 133 RGSLLSPRPISYLKGSAGGPLLCPAGHAVGLFRAAVCTR---GVAKAVDF-IPVENLETT 188
Query: 300 V 300
+
Sbjct: 189 M 189
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 38 SSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLEL 97
+ IL ++C + + F S + +LQ ED + Q+ +TS I+ ++L
Sbjct: 7 NCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQL 66
Query: 98 SKNPKSTSSELML 110
+ NP +S M+
Sbjct: 67 TYNPDESSKPNMI 79
>pdb|1P09|A Chain A, Structural Plasticity As A Determinant Of Enzyme
Specificity. Creating Broadly Specific Proteases
pdb|1P10|A Chain A, Structural Plasticity As A Determinant Of Enzyme
Specificity. Creating Broadly Specific Proteases
pdb|5LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-lytic
Protease Mutants
pdb|6LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|7LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|8LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|3PRO|A Chain A, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|3PRO|B Chain B, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|4PRO|A Chain A, Alpha-lytic Protease Complexed With Pro Region
pdb|4PRO|B Chain B, Alpha-lytic Protease Complexed With Pro Region
Length = 198
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQGNACMGRGDSGGSWITSAGQAQGVASG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|3M7U|A Chain A, Crystal Structure Of Alpha-Lytic Protease Sb1+2 R64aE182Q
MUTANT
Length = 198
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 QRLQPILSQYG 192
>pdb|1P01|A Chain A, Serine Protease Mechanism. Structure Of An Inhibitory
Complex Of Alpha-lytic Protease And A Tightly Bound
Peptide Boronic Acid
pdb|1P02|A Chain A, Structure Analysis Of Specificity. Alpha-lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P03|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P04|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P05|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P06|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P11|E Chain E, Crystal Structures Of Alpha-Lytic Protease Complexes With
Irreversibly Bound Phosphonate Esters
pdb|1P12|E Chain E, Crystal Structures Of Alpha-Lytic Protease Complexes With
Irreversibly Bound Phosphonate Esters
pdb|9LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|1QRX|A Chain A, Crystal Structure Of Wild-Type Alpha-Lytic Protease At 1.6
A, Ph 5.14
pdb|1TAL|A Chain A, Alpha-Lytic Protease At 120 K (Single Structure Model)
pdb|2ALP|A Chain A, Refined Structure Of Alpha-Lytic Protease At 1.7 Angstroms
Resolution. Analysis Of Hydrogen Bonding And Solvent
Structure
pdb|2ULL|A Chain A, Multiple Conformation Structure Of Alpha-Lytic Protease At
120 K
pdb|3QGJ|A Chain A, 1.3a Structure Of Alpha-Lytic Protease Bound To
Ac-Alaalapro-Alanal
pdb|3QGJ|C Chain C, 1.3a Structure Of Alpha-Lytic Protease Bound To
Ac-Alaalapro-Alanal
pdb|2H5D|A Chain A, 0.9a Resolution Crystal Structure Of Alpha-Lytic Protease
Complexed With A Transition State Analogue,
Meosuc-Ala-Ala-Pro-Val Boronic Acid
pdb|1SSX|A Chain A, 0.83a Resolution Crystal Structure Of Alpha-Lytic Protease
At Ph 8
pdb|2H5C|A Chain A, 0.82a Resolution Crystal Structure Of Alpha-Lytic Protease
At Ph 5
Length = 198
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|1BOQ|A Chain A, Pro Region C-Terminus: Protease Active Site Interactions
Are Critical In Catalyzing The Folding Of Alpha-Lytic
Protease
Length = 198
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|3URD|A Chain A, T181a Mutant Of Alpha-Lytic Protease
Length = 198
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLAQGNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 39/139 (28%)
Query: 179 DLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGF--------EDTLTT 224
DLA++++ + G ++ P +GTS+DL+ G IG P+ E LTT
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELTT 179
Query: 225 GVVSGL---GREIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGT 281
+ GL G +P GN+G + NS G ++G++++ +
Sbjct: 180 -LSRGLRYYGFTVP-------------------GNAGSGIFNSNGELVGIHSSKVSH--L 217
Query: 282 GLSSGVNFAIPIDTVVRTV 300
+N+ + I V+ +
Sbjct: 218 DREHQINYGVGIGNYVKRI 236
>pdb|3M7T|A Chain A, Crystal Structure Of Alpha-Lytic Protease Sb2+3 E8aR105S
MUTANT
Length = 198
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 241 AIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIPIDT----V 296
A+RG Q +A + G+SGG + S G GV + G S+G N IP
Sbjct: 127 AVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSG-----GNVQSNGNNCGIPASQRSSLF 181
Query: 297 VRTVPYLIVYG 307
R P L YG
Sbjct: 182 ERLQPILSQYG 192
>pdb|3TX8|A Chain A, Crystal Structure Of A Succinyl-Diaminopimelate
Desuccinylase (Arge) From Corynebacterium Glutamicum
Atcc 13032 At 2.97 A Resolution
Length = 369
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 233 EIPSPNGRAIRGAIQTDAAINSGNSGGPLMNSFGHVIGVNTATFTRKGTGLSSGVNFAIP 292
+IPSP+G+ + A + + A+ + N G + F N R GL+S V A
Sbjct: 24 DIPSPSGQEKQIADEIEDALRNLNLPGVEVFRF------NNNVLARTNRGLASRVXLAGH 77
Query: 293 IDTV 296
IDTV
Sbjct: 78 IDTV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,161,279
Number of Sequences: 62578
Number of extensions: 399808
Number of successful extensions: 1119
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 121
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)