BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021322
(314 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/202 (59%), Positives = 142/202 (70%), Gaps = 2/202 (0%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQHLYK QLQ+Y QK+NLPLPMYS E GP H RFK KVTI+ QTYES FFPTLK+AE
Sbjct: 155 MQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAE 214
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+ALMSLS FQ+DD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE
Sbjct: 215 HAAAKLALMSLSPAGFQEDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVE 274
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV 180
+ GE F GQ AK+KK AEM+AAK AY LKE + +SP Q SSS S
Sbjct: 275 IEGETFVGQKAKTKKLAEMNAAKAAYTHLKERRSNLNHKSLSPSGQELRGVESSSFNSES 334
Query: 181 --TADLHHNIQTAGRLVFNPNS 200
TADL NI + LV P++
Sbjct: 335 SGTADLQQNIISKLTLVLKPSA 356
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSA 141
+ K LQEL ++ + P Y+T++ G H PTF++TV VGG FS A+S K+A+ +A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 142 AKVAYMRLKEPNP 154
A +A L +P P
Sbjct: 61 AGLAIQYLTDPKP 73
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+ K +LQ +K P YS ++GPPH F V++ G ++ + + KEA+ A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 64 AKVALMSLS 72
A +A+ L+
Sbjct: 61 AGLAIQYLT 69
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 199/348 (57%), Gaps = 69/348 (19%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQHL+KNQLQ+Y QK+N LP+YSCER GPPHASRFKCKVT++GQTYES ++FPTL +AE
Sbjct: 1 MQHLFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
AAK ALMSL + ++D YK++LQELAQ+E LP Y T +SGE+H PTFVS VE
Sbjct: 61 LAAAKAALMSLLSNGV-EEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTFVSKVE 119
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQA----------- 169
+ GE+F+GQGAK+KKQAEMSAAK+AY L++ SQ P +S Q Q
Sbjct: 120 IEGEIFTGQGAKTKKQAEMSAAKIAYTALQQRYSSQSPGFLSTSSQFQEAPRSSPLSPAR 179
Query: 170 -----------DYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKV-----QAEEIRELT 213
+S S+L++ +TA L NIQ PK+ QAEE R +
Sbjct: 180 QSQEAVQSETPQFSVSNLRAGLTAYLQQNIQ------------PKLPVSNEQAEEYRANS 227
Query: 214 TV---NTEVA--GYD-----LSQFPQPEFSSSS----DLSASSGVEKGMPSSSLPLECTV 259
V N +A G D S P P + SS DL++SS +PS S P
Sbjct: 228 VVSNHNPSIASPGQDSCSAMASITPSPAAAISSSPKHDLTSSS-----LPSDS-PTNLAT 281
Query: 260 DPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLH-RDNQWVA 306
++ + + +R + + P+ M +P GS+VL D++W A
Sbjct: 282 SSSIEFMVRGIR--------VLMHPSGTKMTYPAGSTVLPISDDKWAA 321
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQHLYKN+LQ+++QK+ L LPMY+CER+GPPHASRF+CKV IDG+TYES +F TLK+AE
Sbjct: 1 MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 60
Query: 61 HEAAKVALMSLSLDKFQQD-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 119
+ AKVALMSL D Q+D DS LYKN+LQE+AQK LP Y+T QSGE H P FVSTV
Sbjct: 61 NAVAKVALMSLCQDGAQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTV 120
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+VG E F G+ +++KKQAEMSAAKVAY +KE
Sbjct: 121 KVGEENFEGKPSRTKKQAEMSAAKVAYFTIKE 152
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQHLYKN+LQ+++QK+ L LPMY+CER+GPPHASRF+CKV IDG+TYES +F TLK+AE
Sbjct: 200 MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 259
Query: 61 HEAAKVALMSLSLDKFQQD-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 119
+ AKVALMSL D Q+D DS LYKN+LQE+AQK LP Y+T QSGE H P FVSTV
Sbjct: 260 NAVAKVALMSLCQDGAQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTV 319
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+VG E F G+ +++KKQAEMSAAKVAY +KE
Sbjct: 320 KVGEENFEGKPSRTKKQAEMSAAKVAYFTIKE 351
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
++K LQEL +++Y LP Y+ + G+ H P F +TV V G+ F S +KS KQA+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 142 AKVAYMRLKEPNPSQGPALVSP 163
AK+A+ P+ Q P + P
Sbjct: 61 AKLAFDFFSLPSLPQPPEQLCP 82
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++K +LQ +K+ LP YS ++G H RF+ VT+DG+ + S + K+A+++A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 64 AKVALMSLSLDKFQQ 78
AK+A SL Q
Sbjct: 61 AKLAFDFFSLPSLPQ 75
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 188/332 (56%), Gaps = 33/332 (9%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M H+YK QLQ+Y + NL LP+Y+ EREGPPHA RF+C VT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+A+ SL+ + D V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE
Sbjct: 61 HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 178
G+VFSG+ AK+KK AEMSAAKVA+M +K N +Q P L S + Q D +S+ S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176
Query: 179 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTVNTEVAGYDLSQFPQPEFS-- 233
++H Q + ++V P++ KV +E +L A +PE
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232
Query: 234 ----SSSDLSASSGVEKGMP--SSSLPLE----------CTVD--PRVDPIAQSVRADGR 275
S+ A++G+++ + SS +P C VD + I +
Sbjct: 233 DGTLSALTTDAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLIMGTGHLSIP 292
Query: 276 TCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAW 307
T + + RP P + P+ + +L RD++++A+
Sbjct: 293 TGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 324
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M H+YK QLQ+Y + NL LP+Y+ EREGPPHA RF+C VT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+A+ SL+ + D V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE
Sbjct: 61 HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 178
G+VFSG+ AK+KK AEMSAAKVA+M +K N +Q P L S + Q D +S+ S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176
Query: 179 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 232
++H Q + ++V P++ KV +E +L N + L++ P
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232
Query: 233 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 274
+ + G++ + SSSLP+ T++ P + I +++ A DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292
Query: 275 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 307
+C + + RP P + P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M H+YK QLQ+Y + NL LP+Y+ EREGPPHA RF+C VT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+A+ SL+ + D V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE
Sbjct: 61 HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 178
G+VFSG+ AK+KK AEMSAAKVA+M +K N +Q P L S + Q D +S+ S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176
Query: 179 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 232
++H Q + ++V P++ KV +E +L N + L++ P
Sbjct: 177 --PQEIHS--QPSSKVVVTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232
Query: 233 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 274
+ + G++ + SSSLP+ T++ P + I +++ A DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292
Query: 275 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 307
+C + + RP P + P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 122/156 (78%), Gaps = 5/156 (3%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQ L+K+QLQ+Y QK+N LP+YSCER GPPH+SRFKCKVT++GQT+ES ++F TL +AE
Sbjct: 84 MQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAE 143
Query: 61 HEAAKVALMSLSLD-----KFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTF 115
H AAK ALMSL + F D YKN+LQELAQ+E LP Y+T +SGE+H PTF
Sbjct: 144 HAAAKAALMSLLPNGVEEVSFLFMDESGYKNLLQELAQREGCGLPTYSTNKSGEAHVPTF 203
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+STVE+ GE+F+GQGAK+KKQAEMSAAK AY LK+
Sbjct: 204 ISTVEIEGEIFTGQGAKTKKQAEMSAAKTAYTALKQ 239
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK++LQ Q++ LP Y R+G H RF VT++ ++ S T K+A+++A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
AK+A S+ + D L+K+ LQ AQK +ALPVY+ ++ G H+ F
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 117 STVEVGGEVF 126
V V G+ F
Sbjct: 121 CKVTVNGQTF 130
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YK+ LQEL Q+ A+ LP Y + + G++H P F++TV V F S + + K+A+ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 142 AKVAY 146
AK+AY
Sbjct: 61 AKLAY 65
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 190/358 (53%), Gaps = 69/358 (19%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M H+YK QLQ+Y + NL LP+Y+ EREGPPHA RF+C VT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+A + V YKN+LQE+AQKE+ LP Y T SG SHAPTF STVE
Sbjct: 61 HAAAKIAGI-----------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 109
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 178
G+VFSG+ AK+KK AEMSAAKVA+M +K N +Q P L S + Q D +S+ S
Sbjct: 110 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 166
Query: 179 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 232
++H Q + ++V P++ KV +E +L N + L++ P
Sbjct: 167 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 222
Query: 233 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 274
+ + G++ + SSSLP+ T++ P + I +++ A DG
Sbjct: 223 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 282
Query: 275 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 307
+C + + RP P + P+ + +L RD++++A+
Sbjct: 283 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 340
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
HL+KNQLQ+Y QK+N P+YSCER GPPHA RFKCKVT++GQTYES ++FPTL +AE+
Sbjct: 134 HLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAENA 193
Query: 63 AAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG 122
AAK ALMSL + ++D+S YKN+LQ++AQ+E LP Y T++SGE+HAPTF+STVE+
Sbjct: 194 AAKAALMSLLPNGVEEDESG-YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFISTVEID 252
Query: 123 GEVFSGQGAKSKKQAEMSAAKVAY 146
G F+G+ A++KKQAEMSAAK+AY
Sbjct: 253 GVNFTGKEARNKKQAEMSAAKIAY 276
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
+YK+ LQ+L+Q+ + +P Y + G+ H+P F +TV V + + + S K+A+ +A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVT----ADLHHNIQTAGR 193
AK+A+ + +P A S + AD S S N +L ++Q A R
Sbjct: 61 AKLAHNYFSD-HPR---ASSSSPLNVSADCSGGSAGENTRPSPGGNLELDLQDANR 112
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK++LQ +Q++ +P Y +EG H+ F VT+D + + + K+A++ A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 64 AKVA 67
AK+A
Sbjct: 61 AKLA 64
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 135/215 (62%), Gaps = 20/215 (9%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M H+YK QLQ+Y K NL LP+Y+ EREGPPHA RF+CKVT GQT++S +FFPTLK AE
Sbjct: 1 MDHVYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAE 60
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AAK+AL SL+ + ++AQKE LPVY T SG SH+PTF+STVE
Sbjct: 61 HAAAKIALASLTPQSPE-----------AKIAQKENSMLPVYATATSGPSHSPTFISTVE 109
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV 180
G+VF+G AK+KK AEMSAAK+A+M +K N +Q SP + + ++S SNV
Sbjct: 110 FAGKVFTGDEAKTKKLAEMSAAKIAFMSIKNGNSNQ---TSSPSLSCERQEAAS---SNV 163
Query: 181 TADLHHNIQTAGRLVFNPNS---MPKVQAEEIREL 212
+ L ++V P++ + KV +E +L
Sbjct: 164 KSSLQEIHSQPSKVVMTPDAPSKLMKVSEDEFPDL 198
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 95/146 (65%), Gaps = 32/146 (21%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M HL+KNQLQ+Y QK+N LP+YSCER GPPHA RFKCK TI+GQTYES ++FPTL +AE
Sbjct: 173 MLHLFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAE 232
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
++E P Y T++SGE+HAPTF+STVE
Sbjct: 233 --------------------------------KREGCGFPTYCTEKSGEAHAPTFISTVE 260
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAY 146
+ G F+G+ A++KKQAEMSAAK+AY
Sbjct: 261 IDGVSFTGKEARTKKQAEMSAAKIAY 286
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 141
+YK+ LQ + + + LP Y + G+ H+P F +TV V S + S K+A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 142 AKVAY 146
AK+AY
Sbjct: 61 AKLAY 65
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK+ LQ+ ++ LP Y ++G H+ F VT++ ++ S + K+A+ +A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 64 AKVALMSLSL 73
AK+A SL
Sbjct: 61 AKLAYDHFSL 70
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP Y+C REGP HA RFK VT +G+++ES F+ TL++AEH A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LP+Y T +SG H PTF
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G +F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQ 155
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L+ L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQA+ +AA A+ L++
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRK 155
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L +L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQA+ +AA A+ L++
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRK 155
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 100/155 (64%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ + LP Y+C REGP HA RFK V+ +G+ +ES + TL++AEH A
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +LS Q D++ + KN+LQE AQ+ +LPVY+T +SG H P F
Sbjct: 79 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFT 138
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ FSG+ AK+KKQAE +AA A+ LK+
Sbjct: 139 CTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQ 173
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 171/362 (47%), Gaps = 67/362 (18%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK+ LP Y G HA FK +VTIDGQT+ES ++ T+KEAE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 65 KVALMSL--SLDKFQQD--DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
KVALMSL + QQ SV YKN+LQEL QKE + LP+YNT +++ FVSTVE
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVE 214
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA--------------------- 159
+ G F G+ +KKQAEM+AAK A+ K N G +
Sbjct: 215 IRGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLR 274
Query: 160 ---------LVSPDIQAQADYSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP-- 202
L P + +A YSS+ + ++ ++ + +L SM
Sbjct: 275 AKLEVNKSHLAEPSTEVEAIYSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVK 334
Query: 203 ------KVQ----AEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSS 252
KV AE I E +++ + D P+P SSS L + V S
Sbjct: 335 VVNSSLKVDKLHFAEPITEAEVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHS 387
Query: 253 LPLECTVDPRVDPIAQS---VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQW 304
P+ T+ P + + + V D C + I+V P +M PEG++VL DNQW
Sbjct: 388 APISPTITPTLISVPTATMPVSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQW 447
Query: 305 VA 306
VA
Sbjct: 448 VA 449
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH-QFFPTLKEAEHE 62
+YK++LQ QK+ P+Y REGP HA F+ V ++G+ + S + +LKEA +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 63 AAKVALMSL-------------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGE 109
AA A +L + + + YK+ LQ AQK LP Y G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 110 SHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
HAP F S V + G+ F S + + K+AE AAKVA M L +E NP+Q
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQ 169
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 171/362 (47%), Gaps = 67/362 (18%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK+ LP Y G HA FK +VTIDGQT+ES ++ T+KEAE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 65 KVALMSL--SLDKFQQD--DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
KVALMSL + QQ SV YKN+LQEL QKE + LP+YNT +++ FVSTVE
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVE 214
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA--------------------- 159
+ G F G+ +KKQAEM+AAK A+ K N G +
Sbjct: 215 IHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLR 274
Query: 160 ---------LVSPDIQAQADYSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP-- 202
L P + +A YSS+ + ++ ++ + +L SM
Sbjct: 275 AKLEVNKSHLAEPSTEVEAIYSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVK 334
Query: 203 ------KVQ----AEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSS 252
KV AE I E +++ + D P+P SSS L + V S
Sbjct: 335 VVNSSLKVDKLHFAEPITEAEVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHS 387
Query: 253 LPLECTVDPRVDPIAQS---VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQW 304
P+ T+ P + + + V D C + I+V P +M PEG++VL DNQW
Sbjct: 388 APISPTITPTLISVPTATMPVSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQW 447
Query: 305 VA 306
VA
Sbjct: 448 VA 449
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH-QFFPTLKEAEHE 62
+YK++LQ QK+ P+Y REGP HA F+ V ++G+ + S + +LKEA +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 63 AAKVALMSL-------------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGE 109
AA A +L + + + YK+ LQ AQK LP Y G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 110 SHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
HAP F S V + G+ F S + + K+AE AAKVA M L +E NP+Q
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQ 169
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 171/362 (47%), Gaps = 67/362 (18%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK+ LP Y G HA FK +VTIDGQT+ES ++ T+KEAE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 65 KVALMSL--SLDKFQQD--DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
KVALMSL + QQ SV YKN+LQEL QKE + LP+YNT +++ FVSTVE
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVE 214
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA--------------------- 159
+ G F G+ +KKQAEM+AAK A+ K N G +
Sbjct: 215 IHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANPLPVAATKQSVDGNTLR 274
Query: 160 ---------LVSPDIQAQADYSSSSLQS------NVTADLHHNIQTAGRLVFNPNSMP-- 202
L P + +A YSS+ + ++ ++ + +L SM
Sbjct: 275 AKLEVNKSHLAEPSTEVEAIYSSTEVDKLPLPGPSMDIEVMDSTLEVDKLPLPERSMDVK 334
Query: 203 ------KVQ----AEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSS 252
KV AE I E +++ + D P+P SSS L + V S
Sbjct: 335 VVNSSLKVDKLHFAEPITEAEVIHSSLQ-VDEPLIPKPGMSSS--LENTPAVN----GHS 387
Query: 253 LPLECTVDPRVDPIAQS---VRADGRTCKI----IRVRPNRPNMKFPEGSSVLH-RDNQW 304
P+ T+ P + + + V D C + I+V P +M PEG++VL DNQW
Sbjct: 388 APISPTITPTLISVPTATMPVSNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQW 447
Query: 305 VA 306
VA
Sbjct: 448 VA 449
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH-QFFPTLKEAEHE 62
+YK++LQ QK+ P+Y REGP HA F+ V ++G+ + S + +LKEA +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 63 AAKVALMSL-------------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGE 109
AA A +L + + + YK+ LQ AQK LP Y G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 110 SHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
HAP F S V + G+ F S + + K+AE AAKVA M L +E NP+Q
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQ 169
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES Q+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQ 155
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 7/157 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
STVE+ G F+G AK+KK AE +AA A+ LK+ N
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSN 157
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES Q+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQ 155
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 97/154 (62%), Gaps = 7/154 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L +L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLASRGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
TVE+ G F+G+ A++KKQA+ +AA A+ LK
Sbjct: 121 CTVELAGMSFTGEPARTKKQAQKNAAMAAWSALK 154
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPSQG 157
A+VA L PS+
Sbjct: 61 AEVALNTLASRGPSRA 76
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 89/151 (58%), Gaps = 39/151 (25%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQHLYK QLQ+Y QK+NLPLPMYS E GP H RFK K
Sbjct: 179 MQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSK--------------------- 217
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
DD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE
Sbjct: 218 ------------------DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVE 259
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+ GE F GQ AK+KK AEM+AAK AY LKE
Sbjct: 260 IEGETFVGQKAKTKKLAEMNAAKAAYTHLKE 290
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSA 141
+ K LQEL ++ + P Y+T++ G H PTF +TV VGG FS A+S K+A+ +A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 142 AKVAYMRLKEPNP 154
A +A L +P P
Sbjct: 70 AGLAIQYLTDPKP 82
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
+ + K +LQ +K P YS ++GPPH F V++ G ++ + + KEA+
Sbjct: 8 REMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQS 67
Query: 62 EAAKVALMSLS 72
AA +A+ L+
Sbjct: 68 NAAGLAIQYLT 78
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS
Sbjct: 61 AEVALNSLSNRGPSH 75
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE A + LPVY + +SG H PTF
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ L++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRK 155
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
Q YK+QLQ Y QKK LP Y REGP HASRFK VT+DG+ +ES ++F T+KEAE
Sbjct: 84 QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAES 143
Query: 62 EAAKVALMSLSLDKFQQD----DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK+ALMSL + + + YKN+LQELAQK ++LPVY+T G P F S
Sbjct: 144 AAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TV F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES-HQFFPTLKEAEHE 62
+YK++LQ Q++ P Y+ GP HA F V+++G + + + KEA +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 63 AAKVAL-----MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK A + L ++ YK+ LQ AQK+ LP Y T + G HA F S
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 118 TVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL 149
V V G+ F S + + K+AE +AAK+A M L
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
Q YK+QLQ Y QKK LP Y REGP HASRFK VT+DG+ +ES ++F T+KEAE
Sbjct: 84 QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAES 143
Query: 62 EAAKVALMSLSLDKFQQDDS----VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK+ALMSL + + + YKN+LQELAQK ++LPVY+T G P F S
Sbjct: 144 AAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TV F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES-HQFFPTLKEAEHE 62
+YK++LQ Q++ P Y+ G HA F V+++G + + + KEA +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 63 AAKVAL-----MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK A + L ++ YK+ LQ AQK+ LP Y T + G HA F S
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 118 TVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL 149
V V G+ F S + + K+AE +AAK+A M L
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LP+Y T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G+ F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQ 155
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE A + LPVY + +SG H PTF
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ L++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRK 155
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F ++V GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS+
Sbjct: 61 AEVALSALSSKGPSK 75
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G +F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS
Sbjct: 61 AEVALNSLSNRAPSH 75
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G +F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L PS
Sbjct: 61 AEVALNSLSNRAPSH 75
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+T+ES F TL+ AEH A
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 74 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 133
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G K+KKQA+ +AA A+ LK+
Sbjct: 134 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQ 168
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+T+ES F TL+ AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQ 155
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+T+ES F TL+ AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQ 155
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +E + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M ++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AE
Sbjct: 1 MADMFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 60
Query: 61 HEAAKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 113
H AA+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P
Sbjct: 61 HAAAEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVP 120
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
TF TVE+ G F+G+ AK+KKQAE +AA A+ LK
Sbjct: 121 TFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALK 157
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
Q YK+QLQ Y QKK LP Y REGP HASRFK VT+DG+ +ES ++F T+KEAE
Sbjct: 84 QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAES 143
Query: 62 EAAKVALMSLSLDKFQQDDS----VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK+ALMSL + + + YKN+LQELAQK ++LPVY+T G P F S
Sbjct: 144 AAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TV F G+ A +KKQAEM+AA+VA+ ++
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES-HQFFPTLKEAEHE 62
+YK++LQ Q++ P Y+ GP HA F V+++G + + + KEA +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 63 AAKVAL-----MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAK AL + L ++ YK+ LQ AQK+ LP Y T + G HA F S
Sbjct: 61 AAKAALDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 118 TVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL 149
V V G+ F S + + K+AE +AAK+A M L
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 98/161 (60%), Gaps = 8/161 (4%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M ++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AE
Sbjct: 1 MADMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAE 60
Query: 61 HEAAKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 113
H AA+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P
Sbjct: 61 HAAAEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVP 120
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
F TVE+ G F+G+ AK+KKQAE +AA A+ LK PN
Sbjct: 121 VFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPN 161
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +LS Q D++ + KN+LQE AQ+ +LPVY T +SG H P F
Sbjct: 125 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFT 184
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVEV FSG+ AK+KKQAE +AA A+ +++
Sbjct: 185 CTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQ 219
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RF+ VT +G+T+E TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LP Y T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 8/158 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL + D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
TVE+ G F+G+ AK+KKQAE +AA A+ LK PN
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRFPN 158
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQ 155
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA L PS
Sbjct: 61 AEVALNSLSHRGPS 74
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RF+ VT +G+T+E TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LP Y T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F + V GE F G G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 103/178 (57%), Gaps = 13/178 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LP+Y T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK------EPNPSQGPALVSPDIQAQ 168
TVE+ G+ F+G K+KKQA+ +AA A+ LK EP+ S P ++Q Q
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKLPRVGEPSSSSCPPDQDDEVQEQ 178
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RF+ VT +G+T+E TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LP Y T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F + V GE F G G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQ 155
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE+F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA L PS
Sbjct: 61 AEVALNSLSHRGPS 74
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 8/158 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 191
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
TVE+ G F+G+ AK+KKQAE +AA A+ LK PN
Sbjct: 192 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPN 229
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 8/158 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
TVE+ G F+G+ AK+KKQAE +AA A+ LK PN
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPN 158
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+T+ES F+ TL+ AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L +L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ A++KKQA+ +AA A+ LK
Sbjct: 121 CNVELAGMSFTGESARTKKQAQKNAAMAAWSALKR 155
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +E Q+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQ 155
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 64 AKVALMSLSL----DKFQQ---DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL F D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +E Q+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQ 155
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+++ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL L SL D++ +YKN+LQE A + LP Y T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G +F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGRIFTGNPGKTKKQAQKNAAMAAWSELKQ 155
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L +L D++ +YKN+LQE A + LPVY T ++G H P F
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFY 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G A++KKQA+ +AA A+ L++
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRK 155
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L +L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G +++KKQA+ +AA A+ L++
Sbjct: 121 CTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRK 155
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPSQGPA 159
A+VA L + PS+ A
Sbjct: 61 AEVALNTLAKRGPSRALA 78
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LP+Y T +SG H P F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G+ F+G K+KKQA+ +AA A+ LK+
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKK 155
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE+F S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA L + PS
Sbjct: 61 AEVALNELSKRGPS 74
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
STVE+ G F+G AK+KK AE +AA A+ LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSLRGPS 74
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 112/195 (57%), Gaps = 20/195 (10%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
MQ ++KNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES +F TL+ AE
Sbjct: 1 MQGMFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAE 60
Query: 61 HEAAKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 113
H AA+VAL +LS Q D++ +YKN+LQE AQ+ LP+Y T +SG H P
Sbjct: 61 HAAAEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLP 120
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
F TV VGG +F+G+ AK+KKQAE +AA A+ LK+ Q S+
Sbjct: 121 VFTCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQ-------------YAKQGGTSA 167
Query: 174 SSLQSNVTADLHHNI 188
+ L+S VT + N
Sbjct: 168 TLLESEVTEEQEQNF 182
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y C REGP HA RFK VT +G+T+ TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LP Y T +SG H+P F
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFA 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
S+VE+ G F+G A++KKQAE +AA A+ LK+
Sbjct: 121 SSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQ 155
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP Y + G HAP F +TV GE F G + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 61 AEVALARLSTRGPS 74
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 7/165 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+V+L L SL D++ +YKN+LQE A + LP+Y + +SG H P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALV 161
TVE+ G F+G+ AK+KKQAE +AA A+ LK+ + A V
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKKKEQEAVARV 165
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 171/356 (48%), Gaps = 58/356 (16%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
Q YKNQLQ Y QK+ LP Y G A FK +VTIDGQT+ES ++ T+KEAE
Sbjct: 91 QLRYKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAET 150
Query: 62 EAAKVALMSLSLDKFQQDD----SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
AAKVALM L + SV YKN+LQE QKE + LP Y+T +++ F+S
Sbjct: 151 AAAKVALMFLPQEAGPTQQLPLPSVSYKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFIS 210
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQ 177
TVE+ G F G+ +KKQAEM+AAK+A+ K+ N G A + + A ++ SL
Sbjct: 211 TVEIQGATFRGEPGNTKKQAEMNAAKIAFQHFKDINHDAGSAGSANRLPVAA--TTQSLD 268
Query: 178 SNVTADLHHNIQTAGRLVFNPNSM--------PKVQAE------EIRELT----TVNTEV 219
N L ++ L+ P++ P + E E+ +L+ +++ EV
Sbjct: 269 GNT---LSAKLEVNKPLLAEPSTEVDKLPLLGPSMDIEVMDSTLEVDKLSLPEQSIDIEV 325
Query: 220 AGYDLSQFPQPEFSSSSDLSASS-----------GVEKGMPSSSLPLECTVDPRVDPIAQ 268
D + PE S+ +++ SS E SSL V+ + IA
Sbjct: 326 LKVD--KLHSPEASTEAEVIHSSLQVDEPLIPEPSTEVEGMDSSLEHTSVVNGQAALIAP 383
Query: 269 SVRA-------------DGRTCKI----IRVRPNRPNMKFPEGSSVL-HRDNQWVA 306
++ + D C + I+V P +M PEG+++L DNQWVA
Sbjct: 384 TITSTLSMSTATMPVSNDSCGCYLGTNRIQVYPRHTDMVIPEGATMLPISDNQWVA 439
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES-HQFFPTLKEAEHE 62
+YK++LQ QK+ P+Y REGP H F+ V ++G+++ S + ++KEA +
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 63 AAKVALMSLS------------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGES 110
AA A +LS + + YKN LQE AQK LP Y G
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 111 HAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
AP F S V + G+ F S + ++ K+AE +AAKVA M L +E P+Q
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQEAGPTQ 168
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +E+ + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+ AL SL SL D++ +YKN+LQE+AQ+ LP Y T +SG H P F
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQ 155
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ Q+ LP YSC REGP HA RFK V +G+T+ES F TL++AEH A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL ++ +L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+VE+ G F+G +++KKQA+ +AA A+ L++
Sbjct: 121 CSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRK 155
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 7/154 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+ REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +L SL D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
TVE+ G F+G AK+KKQA+ +AA A+ LK
Sbjct: 121 CTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALK 154
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + + G HAP F +TV GE F S + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A+VA L + PS+
Sbjct: 61 AEVALNTLSKRGPSR 75
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+V+L L SL D++ +YKN+LQE A + LP+Y + +SG H P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 7/154 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
TV++ F+G+ AK+KKQA+ +AA A+ LK
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALK 154
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LS L D++ +YKN+LQE A + LPVY T +SG H P F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TV++ F+G+ AK+KKQA+ +AA A+ LK
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKR 155
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 7/154 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+V+L L SL D++ +YKN+LQE A + LP+Y + +SG H P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
TVE+ G F+G+ AK+KKQAE +AA A+ LK
Sbjct: 121 CTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLK 154
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/188 (40%), Positives = 99/188 (52%), Gaps = 34/188 (18%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 64 AKVALMSLSLDKFQQ----------------------------------DDSVLYKNVLQ 89
A+VAL +LS Q D++ + KN+LQ
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLLQ 349
Query: 90 ELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
E AQ+ +LPVY T +SG H P F TVEV FSG+ AK+KKQAE +AA A+ L
Sbjct: 350 ETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSAL 409
Query: 150 KEPNPSQG 157
K+ S G
Sbjct: 410 KQCEWSSG 417
Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + G HAP F +TV GEVF S + +QAE +A
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 142 AKVAYMRLKEPNPSQGPA 159
A+VA L PSQ A
Sbjct: 290 AEVALNTLSRRGPSQSLA 307
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES +F TL+ AEH A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL +LS L D++ +YKN+LQE AQ+ LP+Y T +SG H P F
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TV VGG +F+G+ AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQ 155
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ Q+ LP YSC REGP HA RFK V +G+ +ES F TL++AEH A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL + +L D++ +YKN+LQE A + LPVY T +SG H P +
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G A++KKQA+ +AA A+ L++
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRK 155
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y+ + G HAP F +TV GE F S + +QAE +A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPSQGPA 159
A+VA E PS+ A
Sbjct: 61 AEVALNTFAERGPSRALA 78
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK+QLQ + QK +P Y ++G PH RF+ V ++G YES FP LK AEH A
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
AK AL SL S D + L KNVLQE AQ+ ++LP+Y + +G SH F
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+TVE+GG ++ G AKSKK+AE+ AA+ A + +KE
Sbjct: 121 ATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIKE 155
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M L KN LQ Y Q+ LP+Y E GP H S F V I G Y+ + KEAE
Sbjct: 84 MTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKGGT-AKSKKEAE 142
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV 101
+AA+ A+++ ++ELA KE ++ V
Sbjct: 143 VKAARTAILA-----------------IKELAGKECFSFLV 166
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP+Y C R+GP HA RF+ V +G+ +ES + TL++AE A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 64 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VA+ +LS L DD+ +YKN+LQE+A + +LPVY T +SG +H P F
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
V+V G F+G+ A +KKQAE + A A+ LK+
Sbjct: 121 CIVDVFGTRFNGKPAATKKQAEQNTAMAAWSALKQ 155
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP+Y + G HAP F +TV GE+F S + +QAE+ A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
A+VA L + PS +LV+ D+ Y
Sbjct: 61 AEVAVNTLSKRGPSG--SLVAKDLDDTGVY 88
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 100/155 (64%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK VT +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G +F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGIIFTGDHAKNKKQAEKNAASAAWASLKQ 155
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 9/182 (4%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
+ ++KNQLQ + LP YS R+GPPH FK VT +T+ES F+ TL++AE
Sbjct: 263 LSDMHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAE 322
Query: 61 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
H AA VAL SL+ + F D+S +YKN LQE AQKE P Y T +SG SH P F STV+
Sbjct: 323 HAAAAVALKSLTKEGFSIDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVK 382
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV 180
G F+G+ A SKKQAE +AA A+ +K SPD + + L+ N+
Sbjct: 383 FAGTTFAGKEANSKKQAEKNAAMAAWSAVKND---------SPDSEDTNTGTKKELEQNM 433
Query: 181 TA 182
TA
Sbjct: 434 TA 435
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KN+LQ QK + LP Y REGP HA RFK VT +G+ +ES F T KEA++ A
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 64 AKVALMSLSLDKFQQ 78
A+ AL L L K +Q
Sbjct: 61 AEFALEVL-LGKAEQ 74
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
++KN LQE+AQK +LP Y + + G HAP F +TV G F K+ K+A+ +A
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 142 AKVAYMRL-----KEPNPSQGP 158
A+ A L + P + GP
Sbjct: 61 AEFALEVLLGKAEQRPKQANGP 82
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 86/142 (60%), Gaps = 7/142 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP C REGP HA RFK VT +G+T++ TL++AEH A
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL LSL D++ +YKN+LQE A + LPVY T +SG H+P F
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 117 STVEVGGEVFSGQGAKSKKQAE 138
STVE+ G F+G AK+KK AE
Sbjct: 144 STVELAGMSFAGDPAKTKKHAE 165
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YKN LQELAQ+ ++LP + G HAP F +TV GE F G + +QAE +A
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 142 AKVAYMRLKEPNPS 155
A+VA RL PS
Sbjct: 84 AEVALARLSLRGPS 97
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP+Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQ 155
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP+Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQ 155
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP+Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQ 155
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ LK+
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQ 155
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 6/150 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L K LQ+Y +K NL P+++ + E +K V ID +++ES FF ++KEAE A
Sbjct: 122 LSKKHLQNYARKNNLDPPVFTIKTER----LHYKATVVIDEKSFESPTFFNSIKEAEQAA 177
Query: 64 AKVAL--MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 121
AK+AL + +S+D FQ+D+S K++L EL Q+E Y+ P Y T +SG H T+ STVEV
Sbjct: 178 AKIALRELPISVDLFQKDESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYFSTVEV 237
Query: 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
G F G+ ++SKKQA++ AAK+AY+ LKE
Sbjct: 238 EGLKFHGKASRSKKQADIDAAKIAYIALKE 267
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++K +LQ ++ LP Y+ +GP H F V ++G T+ S F + KEA+++A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 64 AKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV--YNTKQSGESHAP 113
A A + + S L + ++ L +++ +++P Y +K+ E+ P
Sbjct: 61 AMKAFRNFT--------SPLSEFAIR-LIRRDGFSIPTDEYGSKEKVEATKP 103
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSA 141
++K LQ+L + ++LP Y G H P+F ++V V G F+ A S K+A+ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 142 AKVAYMRLKEP 152
A A+ P
Sbjct: 61 AMKAFRNFTSP 71
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 92/142 (64%), Gaps = 6/142 (4%)
Query: 10 QSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALM 69
Q+ +K +L P+++ + EGPPH R+K V IDG+++ES F T+KEAE AAK M
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKFVGM 172
Query: 70 SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ 129
FQ+D+ K++LQEL+++E ++ P Y T Q G H PTF STVEV G F G+
Sbjct: 173 ------FQKDEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGK 226
Query: 130 GAKSKKQAEMSAAKVAYMRLKE 151
+KSK +AE AAK+AY+ LKE
Sbjct: 227 ASKSKNKAEEDAAKIAYITLKE 248
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
++K++LQ ++ LP YS +GPPH FK V ++G T+ S F + EA+++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 63 AAKVALMSLS--------------------------LDKFQQDDSVLYKNVLQELAQKEA 96
AA A + + QQ + Q A+K
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 97 YALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLK-EPNP 154
PV+ K G H + + V + G+ F S + K+AE +AAK M K EP P
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKFVGMFQKDEPCP 180
Query: 155 SQ 156
S+
Sbjct: 181 SK 182
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y REGP HA RFK + +G+ +E+ + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 64 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+V L SL SL D++ +YKN++QE+AQ+ LP Y T +SG H P F+
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VE+ G F+G+ AK+KKQAE +AA A+ LK
Sbjct: 121 RIVELTGITFTGEPAKNKKQAEKNAAMAAWSALKR 155
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES FF TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 64 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A+VAL S SL D++ +YKN+LQE+AQ+ LP Y T++SG H P F
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
TVE+ G F+G AK+KKQAE +AA A+ L++
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQ 155
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP YSC REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 64 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A++AL LS Q D++ ++KN+LQE AQ+ LP Y T +SG H P F
Sbjct: 61 AELALNVLSRRGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFT 120
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
VEV G F+G K+KKQAE +AA A+ LK+
Sbjct: 121 CVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQ 155
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y+ + G HAP F + V GEVF S + +QAE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 142 AKVAYMRLKEPNPSQ 156
A++A L PSQ
Sbjct: 61 AELALNVLSRRGPSQ 75
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 9/133 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KNQLQ Q+ LP Y+C REGP HA RFK V +G+ +ES + TL++AEH A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 64 AKVAL---------MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
A+VAL SL+ +D++ +YKN+LQE A + LP Y T +SG H P
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 115 FVSTVEVGGEVFS 127
F TVE+ G F+
Sbjct: 121 FTCTVELAGMNFT 133
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK++ LP Y R GPPHA F+ VTIDG+T+ES Q + T KEAE AA
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAAA 173
Query: 65 KVALMSLSLDKFQQDDSVL--------------YKNVLQELAQKEAYALPVYNTKQSGES 110
+VALMSLS + + ++ +K LQ AQK LP Y Q G S
Sbjct: 174 RVALMSLSQEANPSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEGPS 233
Query: 111 HAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGP 158
HAP F STV + G+ F S Q ++ K++E +AA +A M L + S P
Sbjct: 234 HAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSLTQEGHSSKP 282
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 88/166 (53%), Gaps = 17/166 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFP-------TL 56
++K QL Q++ P P Y+ EGP H RF+ V ++G+ Y S P T
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHS----PDDGGGSGTA 82
Query: 57 KEAEHEAAKVALMSLS----LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHA 112
KEA + AAK A LS Q + + YK+ LQ AQK LP Y+T ++G HA
Sbjct: 83 KEAHNLAAKAAFERLSALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHA 142
Query: 113 PTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
P F STV + G F S Q + K+AE +AA+VA M L +E NPS+
Sbjct: 143 PLFRSTVTIDGRTFESPQDYHTTKEAEFAAARVALMSLSQEANPSE 188
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 78 QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF----SGQGAKS 133
Q + ++K L +L Q+ + P Y + G +H F +TV V GEV+ G G+ +
Sbjct: 22 QSSAAMFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGT 81
Query: 134 KKQAEMSAAKVAYMRL 149
K+A AAK A+ RL
Sbjct: 82 AKEAHNLAAKAAFERL 97
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ YTQ+++L LP+Y EG PH +F+ V +DG+ Y SH F KEAE +
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 64 AKVALMSLSL--------DKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTF 115
AK+AL S++ +KF +D+V K++L E A K +P YNT + G P F
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQG-GLFPIF 131
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
VS+ G ++G ++KK+AE AA+ A + L
Sbjct: 132 VSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSL 165
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAE 138
+ ++YKN LQE Q+++ LP+Y T G H P F STV V GE ++ S +K+AE
Sbjct: 10 EHLMYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAE 69
Query: 139 MSAAKVAYMRLKE 151
AK+A + E
Sbjct: 70 QDVAKLALTSITE 82
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLD-KFQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL LS + Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 9/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P Y +EGP H FK V +DG +Y+S F + K AE
Sbjct: 12 YVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQS 71
Query: 63 AAKVALM----SLSLDKFQQDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM SL+L +V L KN+LQE AQK YA+P Y + + AP
Sbjct: 72 AAEVALMEIAKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP- 130
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+STVE+GG + G A++KK+AE+ AA+ A + ++
Sbjct: 131 FISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQ 166
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK+QLQ Y QK+ L P Y +EG H RFK V ++G+ YES +PTL+ AEH A
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 64 AKVALMSLSLDKFQQ---DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
AK AL L +F+ +S L KN+LQE AQK Y LP Y + + GE H+ F STVE
Sbjct: 61 AKAALDFLQKTQFKVVPVHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVE 120
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
+ G +SG AKSKK+AE+ AA+ A + ++
Sbjct: 121 IAGVSYSGGCAKSKKEAEIKAARTALLAIQ 150
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLD-KFQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL LS + Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+K++AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQ 169
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLD-KFQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL LS + Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+K++AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQ 169
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGPPH FK V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQS 73
Query: 63 AAKVALMSLSLDKFQQD-------DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VAL+ L+ ++ ++ L KN+LQE AQK YA+P+Y K A +
Sbjct: 74 AAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAAS 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG + G A++KK+AE+ AA+ A + ++
Sbjct: 134 FSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK+ +P Y R GPPHA+ FK VTIDGQT+ES Q + T+KEAE AA
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 65 KVALMSL--SLDKFQQ--DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 120
+VALMSL + QQ ++ + Q+LA+KE L VYN +H VE
Sbjct: 149 RVALMSLPQEANPPQQLLVQTISHNRARQDLAEKEGSPLDVYNATLDDSNHFSISKEKVE 208
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAY 146
G F +KKQ+EM A ++A+
Sbjct: 209 TQGRSFQAGPGHTKKQSEMIATELAF 234
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES--HQFFPTL-KEAE 60
++K++L ++ P Y+ + EGP H +F+ V ++G + S + +PT KEA+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 61 HEAAKVALMSLS-----LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTF 115
AAK A LS Q V YK+ LQ AQK +P Y++ +SG HA F
Sbjct: 61 SLAAKAAFEHLSSLPPPPPPPQPGTQVDYKSQLQIYAQKRRKDIPFYHSIRSGPPHATLF 120
Query: 116 VSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQ 156
+TV + G+ F S Q + K+AE +AA+VA M L +E NP Q
Sbjct: 121 KTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLPQEANPPQ 163
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGPPH FK V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQS 73
Query: 63 AAKVALMSLSLDKFQQD-------DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VAL+ L+ ++ ++ L KN+LQE AQK YA+P+Y K A +
Sbjct: 74 AAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAAS 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG + G A++KK+AE+ AA+ A + ++
Sbjct: 134 FSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P Y +EGP H FK V ++ TYES F + K AE
Sbjct: 36 YVFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQS 95
Query: 63 AAKVALMSLSLDKFQQD--------DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM +++ + ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 96 AAEVALMEIAMSAPVAETRSIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 154
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK+AE+ AA+ A + ++
Sbjct: 155 FICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQ 190
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV V + S G S+K A
Sbjct: 33 ENCYVFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAA 92
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 93 EQSAAEVALMEI 104
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 19/167 (11%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L K Q Q+Y K NL P+++ E EGPP R+ V +DG++++S F T KEAE A
Sbjct: 145 LNKLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAA 204
Query: 64 --------AKVALMSLSLDKFQQDDSVL-----------YKNVLQELAQKEAYALPVYNT 104
A+ AL F++ S L K++LQEL Q+ ++P Y +
Sbjct: 205 LQIVDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKS 264
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
++G H PTF STVEV G F G+ + SKK+AE AAK+AY LK+
Sbjct: 265 TRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALKD 311
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 34/178 (19%)
Query: 4 LYKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+YK++LQ + ++ LP YS +GPPH FK V ++G T+ S F + KEA ++
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 63 AAKVALMSLS--------------------------------LDKFQQDDSVLYKNVLQE 90
AA AL++ S D L K Q
Sbjct: 93 AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 152
Query: 91 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYM 147
A K PV+ + G + +TV V G+ F S ++K+AE +A ++ M
Sbjct: 153 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQIVDM 210
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
DD +YKN+LQE+A+KE Y LPVY+T++SG SH PTF+STVE+ GE F GQ AK+KK AE
Sbjct: 234 DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAE 293
Query: 139 MSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV--TADLHHNIQTAGRLVF 196
M+AAK AY LKE + +SP Q SSS S TADL NI + LV
Sbjct: 294 MNAAKAAYTHLKERRSNLNHKSLSPSGQELRGVESSSFNSESSGTADLQQNIISKLTLVL 353
Query: 197 NPNS 200
P++
Sbjct: 354 KPSA 357
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSA 141
+ K LQEL ++ + P Y+T++ G H PTF++TV VGG FS A+S K+A+ +A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 142 AKVAYMRLKEPNP 154
A +A L +P P
Sbjct: 70 AGLAIQYLTDPKP 82
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN LQ +K+ LP+YS E+ G H F V I+G+T+ Q T K AE A
Sbjct: 238 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVG-QKAKTKKLAEMNA 296
Query: 64 AKVALMSL 71
AK A L
Sbjct: 297 AKAAYTHL 304
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
+ + K +LQ +K P YS ++GPPH F V++ G ++ + + KEA+
Sbjct: 8 REMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQS 67
Query: 62 EAAKVALMSLS 72
AA +A+ L+
Sbjct: 68 NAAGLAIQYLT 78
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ +P P Y +EGP H FK V ++ YES F + K AE
Sbjct: 760 YVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQS 819
Query: 63 AAKVALMSLSLDKFQQD--------DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM +++ + ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 820 AAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 878
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
FV +VE+GG ++ G A++KK+AE+ AA+ A + ++
Sbjct: 879 FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQ 914
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQ+ P Y+T + G SH P F STV V + S G S+K A
Sbjct: 757 ENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAA 816
Query: 138 EMSAAKVAYMRLKEPNP 154
E SAA+VA M + P
Sbjct: 817 EQSAAEVALMEIAMSAP 833
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QKK LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 15 YVFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQS 74
Query: 63 AAKVALMSLSL-----DKFQQ--DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VALM L+ D Q ++ L KN+LQE AQK YA+P+Y K
Sbjct: 75 AAEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTL 134
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG + G AK+KK+AE+ AA+ A + ++
Sbjct: 135 FKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQ 170
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 49/273 (17%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
D YKN+LQELAQKE Y LP Y+T GESH PTF STVEV GE F+GQ ++KKQAE
Sbjct: 3 DEFAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQAEF 62
Query: 140 SAAKVAYMRLKEPNPSQGPALVSPD------IQAQADYSSSSLQSNVTADLHHN-IQTAG 192
+AAKVAY LK+ N Q ++ P + + + SS SL ++ ++L I + G
Sbjct: 63 NAAKVAYKALKQRNSKQSSTVLLPSNTSHQPVGSCSGNSSQSLMASSLSNLKQRPITSLG 122
Query: 193 RLVFNPNSM-PKVQAEEIRELTTVN--TEVAGYDLSQFPQPEF----------------- 232
+ S+ P Q +++ + T+ + +++A Y L Q QP
Sbjct: 123 NSRQSAQSLSPPHQKQKVVQFTSSSSRSDLAAY-LKQNVQPRMPGRDKQAEEDREIAEVS 181
Query: 233 -----SSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQSVRADGRTCKI-------- 279
+S++ +S + P S ++ P P+ S+ + I
Sbjct: 182 SAPPTTSANVISCDPHIASAGPESCCKKNISLSP--CPLIFSLPDSAVSSSIEHPTGKNM 239
Query: 280 -----IRVRPNRPNMKFPEGSSVL-HRDNQWVA 306
+ V P NM +P GS+VL D+ WVA
Sbjct: 240 LLHNKVTVHPRGTNMTYPPGSTVLPMSDDNWVA 272
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
QHLYKN LQSY QK+ LPLPMYSCER+GPPHAS FKCKVTIDG++YE FFPT+ +AEH
Sbjct: 79 QHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFFPTVSKAEH 138
Query: 62 EAAKVALMSLSLD 74
AAK AL SL+ D
Sbjct: 139 AAAKAALTSLAPD 151
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK +LQ +K LP YS + G H F V ++G ++ S + K A++ A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 64 AKVALMSLSLDKFQQD-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG 122
AK+A S D LYKN+LQ AQK LP+Y+ ++ G HA F V +
Sbjct: 61 AKLAFDHFSSVSLPPDVQQHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTID 120
Query: 123 GEVF 126
G+ +
Sbjct: 121 GKSY 124
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ-AEMSA 141
+YK LQEL ++ ++LP Y+T + G+ H P F +TV V G FS + A+ +A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 142 AKVAY 146
AK+A+
Sbjct: 61 AKLAF 65
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ +P P Y +EGP H FK V ++ YES F + K AE
Sbjct: 36 YVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQS 95
Query: 63 AAKVALMSLSLDKFQQD--------DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM +++ + ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 96 AAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 154
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
FV +VE+GG ++ G A++KK+AE+ AA+ A + ++
Sbjct: 155 FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQ 190
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF- 126
++ ++ + ++ ++K+ LQE AQ+ P Y+T + G SH P F STV V +
Sbjct: 22 IVGVAPAGIRVENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYE 81
Query: 127 SGQGAKSKKQAEMSAAKVAYMRL 149
S G S+K AE SAA+VA M +
Sbjct: 82 SLPGFFSRKAAEQSAAEVALMEI 104
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K+QLQ Y QK L P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 15 YVFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQS 74
Query: 63 AAKVALMSLS-LDKFQQD------DSVLYKNVLQELAQKEAYALPVYNTKQSGE--SHAP 113
AA+VALM L+ + Q ++ L KN+LQE AQK YA+P+Y +K+ AP
Sbjct: 75 AAEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAP 134
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG 157
+ TV++GG ++ G AK+K++AE+ AA+ A + + + N SQ
Sbjct: 135 LYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAI-QTNASQA 177
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F V ++ Y+S F K AE
Sbjct: 7 YVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQS 66
Query: 63 AAKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VALM LS ++ L KN+LQE AQK +A+P+Y K G
Sbjct: 67 AAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSL 126
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
F TVE+GG + G AK+KK+AE+ AA+ A + ++ PN
Sbjct: 127 FSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN 166
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQS 73
Query: 63 AAKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VALM LS ++ L KN+LQE AQK +A+P+Y K G
Sbjct: 74 AAEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSL 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PN 153
F TVE+GG + G AK+KK+AE+ AA+ A + ++ PN
Sbjct: 134 FSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSCPN 173
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDKFQQD-------DSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL+ L ++ L KN+LQE AQK YA+P+Y K+ A
Sbjct: 74 AAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDKFQQD-------DSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL+ L ++ L KN+LQE AQK YA+P+Y K+ A
Sbjct: 74 AAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 9/153 (5%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ YTQK +L LP+Y EGP H RF+ V +DG Y S + F K AE +
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198
Query: 64 AKVALMSLSLDKFQQD-------DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 116
A +AL S+ L + + + D+V K++L E A K P YNT QS P F+
Sbjct: 199 ANLALESI-LKRVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQS-PGLLPVFI 256
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
ST+ G ++G ++KK+AE AA+ + L
Sbjct: 257 STLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAE 138
D+++YKN LQE QK + LPVY T G +H P F STV V G + Q +K AE
Sbjct: 136 DNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAE 195
Query: 139 MSAAKVAYMRLKEPNPSQG-PALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL-VF 196
A +A + + +G P L+ + ++ + +++ N ++ +Q+ G L VF
Sbjct: 196 QDVANLALESILKRVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVF 255
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 88/151 (58%), Gaps = 3/151 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K QL Y QK + P+Y +EGP HA RF +VTIDGQT+ + + AA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 65 KVALMSLSLDKFQQD---DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 121
+ L Q+ S+ YKN +QE+AQKE +LPVYNT + + ++ + S+V++
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLSYKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKSSVQI 155
Query: 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152
GE+F G+ SKKQAEM+AAK+AY L P
Sbjct: 156 KGEIFEGEPGTSKKQAEMNAAKIAYHHLALP 186
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YKN +Q QK+ + LP+Y+ +++ +K V I G+ +E + K+AE AA
Sbjct: 118 YKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKSSVQIKGEIFEGEPGT-SKKQAEMNAA 176
Query: 65 KVALMSLSLDKFQQDDS 81
K+A L+L + + DD+
Sbjct: 177 KIAYHHLALPELEGDDN 193
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSL-SLDKFQQD------DSVLYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL+ L + Q ++ L KN+LQE AQK YA+P+Y K+ A
Sbjct: 74 AAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TV++GG ++ G AK+KK+AE+ AA+ A + ++
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQ 169
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSL-DKFQQ------DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VAL L+ + Q ++ L KN+LQE AQK YA+P+Y K
Sbjct: 74 AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G ++KK AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE QK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 88/194 (45%), Gaps = 46/194 (23%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+ LQ+Y + KN LP Y REGP HA FK
Sbjct: 161 YKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKA-------------------------- 194
Query: 65 KVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE 124
DDS YKN LQELAQ+E ++PVY +SG H PTF S VE+ GE
Sbjct: 195 -------------TDDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGE 241
Query: 125 VFSGQGAKSKKQAEMSAAKVAYMRLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNV 180
F G+ KSKK+AE+ +A+ AY L E N P SPD + S+ L
Sbjct: 242 KFYGKAGKSKKEAELKSARAAYTVLMERALNRNAESDPPNFSPD---ETLNSTPGLDMTT 298
Query: 181 TADLHHNIQTAGRL 194
+L +++ G+L
Sbjct: 299 AVNLQQHLKQNGQL 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 143
K LQE+ K + LP Y+ + G H P F ++V V G F S KS K A AAK
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 144 VAYMRLKEPNP 154
+A++ P P
Sbjct: 63 MAFLHFTSPPP 73
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K +LQ K+ LP YS ++GP H FK V ++G ++ S + K+A ++AAK
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 66 VALMSLS 72
+A + +
Sbjct: 63 MAFLHFT 69
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H + V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQ 169
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y S F K AE
Sbjct: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 94 AAEVALMEIVKSIPANANIPAVQ--ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 151 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y Q+ LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSLDK-FQQDDSV------LYKNVLQELAQKEAYALPVYNTKQSGE-SHAPT 114
AA+VAL L+ Q S+ L KN+LQE AQK YA+P+Y ++S AP
Sbjct: 74 AAEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G K+KK+AE+S+ + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQ 169
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y S F K AE
Sbjct: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q ++ L KN+LQE AQK YA+P Y + AP
Sbjct: 94 AAEVALMEIVKSIPANANIPAVQ--ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+GG + G A++KK AE+ AA+ A + ++
Sbjct: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 91 EQSAAEVALMEI 102
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 20/142 (14%)
Query: 10 QSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALM 69
Q+ +K +L P+++ + EGPPH R+K V IDG+++ES F T+KEAE AAK M
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKFVGM 172
Query: 70 SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ 129
FQ+D+ K++LQEL+++E ++ P Y T Q + G F G+
Sbjct: 173 ------FQKDEPCPSKSLLQELSEREGFSKPTYKTTQ--------------IEGIGFHGK 212
Query: 130 GAKSKKQAEMSAAKVAYMRLKE 151
+KSK +AE AAK+AY+ LKE
Sbjct: 213 ASKSKNKAEEDAAKIAYITLKE 234
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
++K++LQ ++ LP YS +GPPH FK V ++G T+ S F + EA+++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 63 AAKVALMSL-----SLDK---------------------FQQDDSVLYKNVLQELAQKEA 96
AA A + S K QQ + Q A+K
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 97 YALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLK-EPNP 154
PV+ K G H + + V + G+ F S + K+AE +AAK M K EP P
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKFVGMFQKDEPCP 180
Query: 155 SQ 156
S+
Sbjct: 181 SK 182
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F+ V + Y+S F K AE
Sbjct: 7 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQS 66
Query: 63 AAKVALMSLSLDKFQQDDSV--------LYKNVLQELAQKEAYALPVYNT-KQSGESHAP 113
AA+VAL+ L+ Q ++S L KN+LQE AQK YA+P+Y K
Sbjct: 67 AAEVALVELA-KAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGL 125
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG + G AK+KK+AE+ AA+ A + ++
Sbjct: 126 VFKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQ 162
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H F+ V + Y+S F K AE
Sbjct: 14 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLS-LDKFQQ------DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
AA+VAL+ L+ + + +++ L KN+LQE AQK YA+P+Y K
Sbjct: 74 AAEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLV 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG + G K+KK+AE+ AA+ A + ++
Sbjct: 134 FKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQ 169
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K QL Y QK P+Y +EGP HA RF +VTIDGQT+ + + AA
Sbjct: 81 FKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 140
Query: 65 KVALMSLSLDKFQQDD---SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 121
+ L Q+ S+ YKN +QE+AQKE LPVYNT + + ++ + S+V++
Sbjct: 141 AEVALDLLPPIPPQESTIPSLSYKNFIQEIAQKEGILLPVYNTVPTNKEYSTAYKSSVQI 200
Query: 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
E+F G+ SKKQAEM+AAK+AY L
Sbjct: 201 KCEIFEGEPRTSKKQAEMNAAKIAYHHL 228
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK++L + KK+ P P + EGP H+ F VT++ + + + + P+ KE ++ A
Sbjct: 1 MYKSELHALCSKKHCPKPEFVHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKEVDNLA 60
Query: 64 AKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
A+ AL+SL+ + +K L AQK P+Y Q G +HAP F + V + G
Sbjct: 61 ARAALLSLADSSKPFESKTDFKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDG 120
Query: 124 EVF 126
+ F
Sbjct: 121 QTF 123
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P+Y +EGP H S F+ V ++G Y S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQS 73
Query: 63 AAKVALMSLSL-DKFQQ------DDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPT 114
AA+VAL L+ + Q ++ L KN+LQE AQK YA+P+Y ++ A
Sbjct: 74 AAEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQ 133
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F TVE+GG ++G ++KK AE+SA + A + ++
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 2 QHL-YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
+HL +KN+LQ YTQ+ +PLP+Y EG HA +F+ V +DG TY S F K AE
Sbjct: 19 EHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAE 78
Query: 61 HEAAKVALMSLSLD------KFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
+ A++AL +S ++D+V K++L E A K P Y T Q E P
Sbjct: 79 QDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQP-EGLLPV 137
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
FVS++ G ++G ++KK+AE AA+ + +
Sbjct: 138 FVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSI 172
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 62 EAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 121
EAAKV + S + + +++KN LQE Q+ A LP+Y T G HAP F STV V
Sbjct: 3 EAAKVDCPAPSSTRLPEH--LMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLV 60
Query: 122 GGEVFSGQGAKS-KKQAEMSAAKVAYMRLKEPNPSQGPALVSPD-IQAQADYSSSSLQSN 179
G ++ S +K AE A++A + + +G L+ D + ++ + +++ N
Sbjct: 61 DGATYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMN 120
Query: 180 VTADLHHNIQTAG-------RLVFN 197
+ + +Q G LVFN
Sbjct: 121 LEKPTYTTVQPEGLLPVFVSSLVFN 145
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 82/146 (56%), Gaps = 21/146 (14%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QLQ Y QK+ LP Y R G A FK +VTIDGQT+ES ++ T+KEAE AA
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 65 KVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE 124
KVALMSL + N Q+L L V N ++ FVSTVE+ G
Sbjct: 153 KVALMSLPQE----------ANPTQQL----LVGLDVSN-------YSAGFVSTVEIQGV 191
Query: 125 VFSGQGAKSKKQAEMSAAKVAYMRLK 150
F G+ +KKQAEM+AAK A+ LK
Sbjct: 192 TFHGKRGNTKKQAEMNAAKSAFEHLK 217
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH-QFFPTLKEAEHE 62
+YK++LQ QK+ +Y REGP HA F V ++G+ + S + +LKEA +
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 63 AAKVALMSL-----------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 111
A A +L + + + YK+ LQ AQK LP Y + G
Sbjct: 61 TAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGSLG 120
Query: 112 APTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL-KEPNPSQGPALVSPDIQAQA 169
AP F S V + G+ F S + + K+AE AAKVA M L +E NP+Q LV D+
Sbjct: 121 APLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSLPQEANPTQ-QLLVGLDV---- 175
Query: 170 DYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAE 207
SN +A ++ G K QAE
Sbjct: 176 --------SNYSAGFVSTVEIQGVTFHGKRGNTKKQAE 205
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
AA+VALM + ++ Q+ + L KN+LQE AQK YA+P Y +S AP
Sbjct: 92 AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148
Query: 115 FVSTVEVGGEV-FSGQGAKSKKQAEMSAAKVAYMRLK 150
F+ TVE+ E + G A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQ 185
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRL 149
E SAA+VA M +
Sbjct: 89 EQSAAEVALMEI 100
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 5/163 (3%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++K +LQ YTQK + PLP+Y EG H RFKC VT++G Y+S F K A++ A
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 64 AKVALMSLSLDKFQQDDSVLY----KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 119
A+ A+ L + V+ KNVL+++A K+ P Y + GE+H PTF + V
Sbjct: 61 AEAAVKKLVNQGLLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIV 120
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVS 162
E+ G ++G A SKK A AA A +R +P+ Q ++++
Sbjct: 121 EINGAFYAGDPANSKKDATNKAACKA-IRAIDPHYFQAESIIN 162
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 10/149 (6%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y S F K AE
Sbjct: 14 YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE-- 71
Query: 63 AAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEV 121
+S + + + L KN+LQE AQK YA+P+Y K F TVE+
Sbjct: 72 ------LSQCVSQPVHETG-LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEI 124
Query: 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
GG ++G ++KK AE+SA + A + ++
Sbjct: 125 GGIKYTGAATRTKKDAEISAGRTALLAIQ 153
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN+LQ +T K + P+Y EG H+ +F+ V + Y S F K AEHEA
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 64 AKVALMSLSLDKFQQDDSV--------LYKNVLQELAQKEAYALPVYNTKQSGESHA-PT 114
A++AL S+ K +D+ + K+++ E A K P YNT Q P
Sbjct: 61 ARLALESIL--KRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPI 118
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F++++ G ++G A++KK+AE SAAK A + +
Sbjct: 119 FITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSI 153
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 114/255 (44%), Gaps = 36/255 (14%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN L YTQK + +P+Y EG P +++ V +D Y S F + AE +A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 64 AKVALMSLSL----DKF--QQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
A+VA +S D F ++D +L K++L E K P+Y TK + S A F S
Sbjct: 137 ARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVA-FFQS 195
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE--PNPSQGPALVSPDIQAQADYSSSS 175
T+ G V++ ++KK+AE AA+ A + L E NP AL DI A +
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALG--DIIASKVRFHAM 253
Query: 176 LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDL----------- 224
LQ ++ + F P SMP+ E + E+ L
Sbjct: 254 LQ---------KVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCGAISE 304
Query: 225 ----SQFPQPEFSSS 235
SQF QPEFS++
Sbjct: 305 ACPTSQF-QPEFSAT 318
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 114/255 (44%), Gaps = 36/255 (14%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN L YTQK + +P+Y EG P +++ V +D Y S F + AE +A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 64 AKVALMSLSL----DKF--QQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
A+VA +S D F ++D +L K++L E K P+Y TK + S A F S
Sbjct: 137 ARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVA-FFQS 195
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE--PNPSQGPALVSPDIQAQADYSSSS 175
T+ G V++ ++KK+AE AA+ A + L E NP AL DI A +
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALG--DIIASKVRFHAM 253
Query: 176 LQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDL----------- 224
LQ ++ + F P SMP+ E + E+ L
Sbjct: 254 LQ---------KVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCGAISE 304
Query: 225 ----SQFPQPEFSSS 235
SQF QPEFS++
Sbjct: 305 ACPTSQF-QPEFSAT 318
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 37/44 (84%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDG 44
M HLYKNQLQSY QK NL LP+YS E EGPPHA RFKCKVT+DG
Sbjct: 116 MLHLYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDG 159
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
LYKN LQ QK +LPVY+++ G HA F V V G
Sbjct: 119 LYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDG 159
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK++LQ Y Q+ N LP+Y + +G H +FK V +DG+ + S +K+AE +AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 65 KVALMSL---------SLDKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 113
KVA +L D F+ D V K++L E K P Y+ ++ S P
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 158
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
+VS+V G ++G A++KK AE AA+ A L N
Sbjct: 159 -YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLATN 197
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK++LQ Y Q+ N LP+Y + +G H +FK V +DG+ + S +K+AE +AA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 65 KVALMSL---------SLDKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAP 113
KVA +L D F+ D V K++L E K P Y+ ++ S P
Sbjct: 97 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 156
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
+VS+V G ++G A++KK AE AA+ A L N
Sbjct: 157 -YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLATN 195
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
++++KN+LQS+ ++ P+Y E EG H +F+C V + GQ + S F KEAE
Sbjct: 45 KYMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQ 104
Query: 62 EAAKVA---LMSLSLDKFQQ------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHA 112
+AA++A L ++ D ++ D+V K++L E A K P Y+ E
Sbjct: 105 DAARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYI-EKPL 163
Query: 113 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
F + V G ++G+ A++KK AE +AA+
Sbjct: 164 TLFAAIVVFDGNSYTGESARNKKDAEQNAAR 194
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAE 138
D ++KN LQ A++ PVY + G SH P F TVEVGG+ FS G+ KK+AE
Sbjct: 44 DKYMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAE 103
Query: 139 MSAAKVAYMRL 149
AA++AY L
Sbjct: 104 QDAARIAYEIL 114
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
D++ +YKN+LQE+AQ+ LP Y T++SG H P F TVE+ G F+G AK+KKQAE
Sbjct: 75 DETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQAE 134
Query: 139 MSAAKVAYMRLKE 151
+AA A+ L++
Sbjct: 135 KNAASAAWSSLRQ 147
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKN LQ Q+ PLP Y+ ER G H F C V + G T+ K+AE A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAK-NKKQAEKNA 137
Query: 64 AKVALMSL 71
A A SL
Sbjct: 138 ASAAWSSL 145
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
++++KN+LQS+ ++ P+Y E EG H +F C V + Q + S F KEAE
Sbjct: 56 KYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQ 115
Query: 62 EAAKVALMSLSL-------DKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHA 112
+AA+VA L+ + F+ D+V K++L E A K LP Y+
Sbjct: 116 DAARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKP 175
Query: 113 PT-FVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
T F + V G + G+ A +KK AE +AA+V
Sbjct: 176 LTLFAAIVVFDGNAYHGESAPNKKDAEQNAARV 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAE 138
D ++KN LQ A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE
Sbjct: 55 DKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAE 114
Query: 139 MSAAKVAYMRL 149
AA+VAY L
Sbjct: 115 QDAARVAYEIL 125
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/56 (62%), Positives = 47/56 (83%)
Query: 91 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
+AQ+E LP Y T++SGE+HAPTF+STVE+ G +F+G+ A++KKQAEMSAAK AY
Sbjct: 1 MAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAY 56
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YKN+LQ Q+ + LP+Y E++G H F+ V + G + S + +K+AE +AA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 65 KVALMSLSLDKFQQD------------DSVLYKNVLQELAQKEAYALPVYNTKQ-SGESH 111
+VA L D D + K++L E A K P Y+ + G S
Sbjct: 90 RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 145
FVS+V G+ ++G+ A SKK AE AA+ A
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAA 183
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAE 138
D YKN LQELAQ+ LPVY T++ G+ H P F STVEV G+ FS + K AE
Sbjct: 26 DKCNYKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAE 85
Query: 139 MSAAKVAY 146
AA+VAY
Sbjct: 86 QDAARVAY 93
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KN+LQS+ ++ P+Y E EG H +F C V + Q + S F KEAE +A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 64 AKVALMSLSL-------DKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 114
A+VA L+ + F+ D+V K++L E A K LP Y+ T
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 120
Query: 115 -FVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
F + V G + G+ A +KK AE +AA+V
Sbjct: 121 LFAAIVVFDGNAYHGESAPNKKDAEQNAARV 151
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSA 141
++KN LQ A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 142 AKVAY 146
A+VAY
Sbjct: 61 ARVAY 65
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 40/50 (80%)
Query: 100 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
PVY+T +SGE+H P F S VE+ GE+F+GQ AKSKK AEMSAAKVAY L
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFL 90
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K++LQEL Q+ ++P Y + ++G H PTF STVEV G F G+ + SKK+AE AAK+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKI 65
Query: 145 AYMRLKEPNPSQGPALVSPDIQAQADYSS 173
AY LK+ A S + QA+ S+
Sbjct: 66 AYKALKDGGLHMYAAFSSSIKKNQAEQST 94
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K+ LQ TQ++ +P Y R GPPH F V ++G + + + KEAE++AAK
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHG-KASSSKKEAEYDAAK 64
Query: 66 VALMSL 71
+A +L
Sbjct: 65 IAYKAL 70
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++KN L + K N+ P + EG A ++ V +DG + S F K AE E
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 64 AKVALMSLSLDKFQQDDSVL------YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
A+ AL L+ + S++ K VL E A K + LP Y + + E P FV
Sbjct: 87 ARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEV-IPYFVC 145
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
T+++ G ++G A+ KK A AA+ A + +
Sbjct: 146 TLDLNGTSYTGDAARRKKDAVELAARAAILSI 177
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQLQ Q+ LP Y+ +EGP HA RFK V +G+ +++ + TL++AEH A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 64 AKVALMSLS 72
A+V L SL+
Sbjct: 61 AEVTLNSLT 69
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+YKN LQELAQ+ + LP Y + Q G HAP F + V G++F + + +QAE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 142 AKVAYMRLKEPNPSQGPA 159
A+V L PS A
Sbjct: 61 AEVTLNSLTHRGPSHSLA 78
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 11 SYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMS 70
S+ ++ P+Y E EG H +F C V + Q + S F KEAE +AA+VA
Sbjct: 76 SFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEI 135
Query: 71 LSL-------DKFQ--QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT-FVSTVE 120
L+ + F+ D+V K++L E A K LP Y+ T F + V
Sbjct: 136 LTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVV 195
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKV 144
G + G+ A +KK AE +AA+V
Sbjct: 196 FDGNAYHGESAPNKKDAEQNAARV 219
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 91 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSAAKVAYMRL 149
A++ P+Y + G+SH P F TVEVG + FS G+ S KK+AE AA+VAY L
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
H++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y S F K AE
Sbjct: 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 62
Query: 63 AAKVALMSLS 72
AA+VAL L+
Sbjct: 63 AAEVALRELA 72
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEM 139
S ++K+ LQE AQK PVY + G SH F STV + G + S G ++K AE
Sbjct: 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 61
Query: 140 SAAKVAYMRL 149
SAA+VA L
Sbjct: 62 SAAEVALREL 71
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 1704 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 1762
Query: 143 KVAYMRLK 150
+ A + ++
Sbjct: 1763 RTALLAIQ 1770
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 1267 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 1326
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 1327 AAEVALMEI 1335
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 1264 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 1323
Query: 138 EMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVT-----ADLHHNI 188
E SAA+VA M + + P+ P +Q ++ S Q N+ AD HH++
Sbjct: 1324 EQSAAEVALMEIVKSIPANANI---PAVQETGLCNTGSQQLNLREMHREADHHHHL 1376
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L KN LQ Y QK N +P Y C + A F C V I G Y T K+AE +A
Sbjct: 1704 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAA-ARTKKDAEIKA 1761
Query: 64 AKVALMSL 71
A+ AL+++
Sbjct: 1762 ARTALLAI 1769
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 533
Query: 143 KVAYMRLK 150
+ A + ++
Sbjct: 534 RTALLAIQ 541
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 92 AAEVALMEI 100
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNVT-----ADLHHNI 188
E SAA+VA M + + P+ PA+ Q + ++ S Q N+ AD HH +
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLCNTGSQQLNLREMHREADHHHRL 147
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L KN LQ Y QK N +P Y C + A F C V I G Y T K+AE +A
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAAR-TKKDAEIKA 532
Query: 64 AKVALMSL 71
A+ AL+++
Sbjct: 533 ARTALLAI 540
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN+LQE AQK YA+P Y +S AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 533
Query: 143 KVAYMRLK 150
+ A + ++
Sbjct: 534 RTALLAIQ 541
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 92 AAEVALMEI 100
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNVT-----ADLHHNI 188
E SAA+VA M + + P+ PA+V Q + ++ S Q N+ AD HH++
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVVHNSTQQETGLCNTGSQQLNLREMHREADHHHHL 147
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L KN LQ Y QK N +P Y C + A F C V I G Y T K+AE +A
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAAR-TKKDAEIKA 532
Query: 64 AKVALMSL 71
A+ AL+++
Sbjct: 533 ARTALLAI 540
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK LP P+Y +EGP H S F+ V +DG Y S F K AE
Sbjct: 17 YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 76
Query: 63 AAKVALMSLS 72
AA+VAL L+
Sbjct: 77 AAEVALRELA 86
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQ-GAKSKKQAE 138
+ ++K+ LQE AQK PVY + G SH F STV + G ++ G ++K AE
Sbjct: 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 74
Query: 139 MSAAKVAYMRL 149
SAA+VA L
Sbjct: 75 QSAAEVALREL 85
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K +LQ Y QKK LP P+Y +EGP H F+ V ++ Y+S F K AE
Sbjct: 14 YVFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQS 73
Query: 63 AAKVALMSLS 72
A +VALM L+
Sbjct: 74 AVEVALMELA 83
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 138
+ ++K LQE AQK+ P+Y T + G SH P+F STV V + S G ++K AE
Sbjct: 12 NCYVFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAE 71
Query: 139 MSAAKVAYMRL 149
SA +VA M L
Sbjct: 72 QSAVEVALMEL 82
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 143 KVAYMRLK 150
+ A + ++
Sbjct: 529 RTALLAIQ 536
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y S F K AE
Sbjct: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 94 AAEVALMEI 102
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 138 EMSAAKVAYMRLKEPNPS 155
E SAA+VA M + + P+
Sbjct: 91 EQSAAEVALMEIVKSIPA 108
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L KN LQ Y QK N +P Y C + A F C V I G Y T K+AE +A
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAAR-TKKDAEIKA 527
Query: 64 AKVALMSL 71
A+ AL+++
Sbjct: 528 ARTALLAI 535
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN+LQE AQK YA+P Y + AP F+ TVE+GG + G A++KK AE+ AA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 143 KVAYMRLK 150
+ A + ++
Sbjct: 529 RTALLAIQ 536
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y S F K AE
Sbjct: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 94 AAEVALMEI 102
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 31 ENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAA 90
Query: 138 EMSAAKVAYMRLKEPNPS 155
E SAA+VA M + + P+
Sbjct: 91 EQSAAEVALMEIVKSIPA 108
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
L KN LQ Y QK N +P Y C + A F C V I G Y T K+AE +A
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAAR-TKKDAEIKA 527
Query: 64 AKVALMSL 71
A+ AL+++
Sbjct: 528 ARTALLAI 535
>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 618
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 38/233 (16%)
Query: 20 LPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQD 79
L R GPPHA F V +DGQ +E ++K+A+H AK AL KF Q
Sbjct: 83 LQFIEVSRSGPPHAPVFVMGVKVDGQYFEGKGC--SIKQAKHIVAKQAL------KFVQS 134
Query: 80 DSVLYKNVLQE---------------LAQKEAYAL--------PVYNT-KQSGESHAPTF 115
D + V E L+Q + L +Y+T +SG H +
Sbjct: 135 DVEIGGTVDAESGNGDQLSTTSESETLSQSDPTLLLAAYNPGPIIYDTLSESGNGHEKMY 194
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK-EPNPSQGPAL-VSPDIQAQADYSS 173
V+VG VF G GA +K Q +M+AA+ A +L + P+ L +S IQ
Sbjct: 195 TMAVKVGDAVFQGTGA-NKHQGKMAAARAALSQLNVQSEPTTNHELQMSDHIQKLVYTKF 253
Query: 174 SSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQ 226
+S+ N T+ AG +V N+ P Q+ ++ +TT + G +LS+
Sbjct: 254 TSITENFTSPYSKRRVLAG-IVQTVNNDP--QSAQVIAVTTGTKCINGRNLSK 303
>gi|356569838|ref|XP_003553102.1| PREDICTED: caltractin-like [Glycine max]
Length = 265
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
Q+G H PTF STVEV G F G+G +SKKQ+E +A K+AY+ LKE
Sbjct: 2 QAGSPHMPTFFSTVEVEGVEFHGKGGRSKKQSEENATKIAYIALKE 47
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 74/192 (38%), Gaps = 43/192 (22%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YKN LQ Y QK LP P Y GP + VT + + +KEAE+ AA
Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVLSGP---GMYIGNVTFNNTLVHGTVAYRIIKEAENNAA 200
Query: 65 KVALMSLSLDKFQQDDSVL----------------------------YKNVLQELAQKEA 96
AL L + ++S+ +K+ L ELAQK
Sbjct: 201 FEALKQLG---YLHENSIYIPIAGVKRSNDTQDPWYSKKPKPALCSSFKSKLNELAQKRH 257
Query: 97 YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRLKEP--- 152
P Y T S A ++STV G F G KK AE +AA VAY L
Sbjct: 258 LGTPTYQTIYS----AGGYLSTVVFNGREFKGMSPCMKKKDAEQNAAFVAYNVLSNDLSS 313
Query: 153 -NPSQGPALVSP 163
P + PA+ P
Sbjct: 314 LPPVKAPAVKKP 325
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN LQE Q+ ALP Y T + + T VSTV V G + G+ KK+AE+SAA +
Sbjct: 372 KNRLQEYCQRLKKALPQYKTALNSDK---TRVSTVIVEGVHYQGEAKVFKKEAELSAASI 428
Query: 145 AYMRL 149
A L
Sbjct: 429 ALKAL 433
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
++K LQEL +++Y LP Y+ + G+ H P F +TV V G+ F S +KS KQA+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 142 AKVAYMRLKEPNPSQGPALVSP 163
AK+A+ P+ Q P + P
Sbjct: 61 AKLAFDFFSLPSLPQPPEQLCP 82
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
++K +LQ +K+ LP YS ++G H RF+ VT+DG+ + S + K+A+++A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 64 AKVALMSLSL 73
AK+A SL
Sbjct: 61 AKLAFDFFSL 70
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V V G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAYMRL 149
KVAY L
Sbjct: 232 KVAYENL 238
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+++G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA +L
Sbjct: 231 AKVAYENL 238
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
KN LQ Y QK L LP Y HA +F CKV + G Y S + K+AE AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNS-LWMDNKKDAEKHAAT 66
Query: 66 VALMSLS 72
VAL+ LS
Sbjct: 67 VALVELS 73
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN LQE QK LP Y+ + + HA F+ V+V G ++ +KK AE AA V
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATV 67
Query: 145 AYMRL 149
A + L
Sbjct: 68 ALVEL 72
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 80 DSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
++ L KN+LQE AQK YA+P Y TKQ+ + F+ +VE+GG ++ G A++KK AE
Sbjct: 89 ETGLCKNLLQEYAQKMNYAIPSYICTKQA----SGPFICSVEIGGILYIGAAARTKKGAE 144
Query: 139 MSAAKVAYMRLK 150
+ AA+ A + ++
Sbjct: 145 IKAARTALLAIQ 156
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCERE--GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 61
L KN LQ Y QK N +P Y C ++ GP F C V I G Y T K AE
Sbjct: 92 LCKNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAAR-TKKGAEI 145
Query: 62 EAAKVALMSL 71
+AA+ AL+++
Sbjct: 146 KAARTALLAI 155
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 61 HEAAKVALMSLSLDKFQQDDSVL-------YKNVLQELAQKEAYALPVYN-TKQSGESHA 112
EAAK +M L L+ QQ +VL YK LQE QK +P Y +++G H
Sbjct: 149 FEAAKSFVM-LYLE--QQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHD 205
Query: 113 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
TF V+V G+VF +KKQAE AAK+AY +L +PN
Sbjct: 206 FTFFVEVDVNGQVFGPASGANKKQAEQMAAKLAYDQLVKPN 246
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y QK+ +P Y+ R+ GP H F +V ++GQ + K+AE A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPAS-GANKKQAEQMA 234
Query: 64 AKVA 67
AK+A
Sbjct: 235 AKLA 238
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V V G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAYMRL 149
KVAY L
Sbjct: 232 KVAYENL 238
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+++G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA +L
Sbjct: 231 AKVAYENL 238
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK L P Y +EGP H FK V I+ +Y+S F K AE
Sbjct: 32 YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 63 AAKVALMSL 71
AA+VALM +
Sbjct: 92 AAEVALMEI 100
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK P Y+T + G SH P F STV + + S G ++K A
Sbjct: 29 ENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAA 88
Query: 138 EMSAAKVAYMRLKEPNPSQG--PALVSPDIQAQADYSSS-SLQSNVT-----ADLHHNI 188
E SAA+VA M + + P+ PA+ Q + ++ S Q N+ AD HH +
Sbjct: 89 EQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLCNTGSQQLNLREMHREADHHHRL 147
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAYMRL 149
KVAY L
Sbjct: 232 KVAYENL 238
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA +L
Sbjct: 231 AKVAYENL 238
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 39 KVTIDGQTYESHQFFPTLKEAEHEAAKVA--LMSLSLDKFQQDDSVL-YKNVLQELAQKE 95
K +I T E+ L+ EAAK+ L +DK + L +K LQEL +E
Sbjct: 132 KTSILADTLEALIGAVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEE 191
Query: 96 AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+P Y+ +SG H TF +TV VGG + +SKK+AE AA+ + +KE
Sbjct: 192 ELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEATWHAIKE 247
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y GP H F+ V + G TY S + + KEAE AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGE-GRSKKEAEQRAA 238
Query: 65 K 65
+
Sbjct: 239 E 239
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK-KQAEMSAA 142
YK+ LQE Q+ LP+Y TK GE H F STV V GE FS + K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 143 KVAYMRLKE 151
KVAY L E
Sbjct: 99 KVAYDTLLE 107
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK++LQ Y Q+ N LP+Y + +G H +FK V +DG+ + S +K+AE +AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 65 KVALMSLSLDK-FQQDDSVLYKNVLQ 89
KVA +L K + DD+ +++ + Q
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQ 124
>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
Length = 123
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YKNQL L Y C EGP H RF+ VT + +T+E TL++AEH A
Sbjct: 1 MYKNQL----------LTSYVCTPEGPDHTPRFRAAVTFNSETFEGPSGCTTLRQAEHAA 50
Query: 64 AKVALMSLSL 73
A+V L LSL
Sbjct: 51 AEVTLARLSL 60
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAYMRL 149
KVAY L
Sbjct: 232 KVAYEDL 238
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA L
Sbjct: 231 AKVAYEDL 238
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAY 146
KVAY
Sbjct: 232 KVAY 235
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA L
Sbjct: 231 AKVAYEDL 238
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAYMRL 149
KVAY L
Sbjct: 232 KVAYEDL 238
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA L
Sbjct: 231 AKVAYEDL 238
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
+++K++LQ Y QK + Y +EGP H FK V ++ YES F + K AE
Sbjct: 31 YVFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQS 90
Query: 63 AAKVALMSLSLDK 75
AA+VALM +++ +
Sbjct: 91 AAEVALMEIAMSE 103
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQA 137
++ ++K+ LQE AQK Y+T + G SH P F STV V + S G S+K A
Sbjct: 28 ENCYVFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAA 87
Query: 138 EMSAAKVAYMRLKEPNPSQGPALVS 162
E SAA+VA M + PA+VS
Sbjct: 88 EQSAAEVALMEIAMSETRGIPAVVS 112
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL QK+ +P Y K+ SG H TF +V + G+V+ K+KK+AE S A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 143 KVAY 146
KVAY
Sbjct: 232 KVAY 235
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ QKK +P Y ++ GP H F V+I+G+ Y T KEAE
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLS-GKTKKEAEQSV 230
Query: 64 AKVALMSL 71
AKVA L
Sbjct: 231 AKVAYEGL 238
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 8 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 67
Query: 142 AKVAYMRLK 150
+ A + ++
Sbjct: 68 GRTALLAIQ 76
Score = 44.3 bits (103), Expect = 0.076, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
L KN LQ Y QK N +P+Y C++ E ++F C V I G Y T K+AE
Sbjct: 8 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA-TRTKKDAEIS 66
Query: 63 AAKVALMSL 71
A + AL+++
Sbjct: 67 AGRTALLAI 75
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
L KN+LQE AQK YA+P+Y ++ F TVE+GG ++G ++KK AE+SA
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 142 AKVAYMRLK 150
+ A + ++
Sbjct: 65 GRTALLAIQ 73
Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
L KN LQ Y QK N +P+Y C++ E ++F C V I G Y T K+AE
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA-TRTKKDAEIS 63
Query: 63 AAKVALMSLSLD 74
A + AL+++ D
Sbjct: 64 AGRTALLAIQSD 75
>gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001]
gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001]
Length = 245
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHAS--RFKCKVTIDGQTYESHQFFPTLKEA 59
+H +K+ LQ +TQ + L LP YSCE HA RF C++T+ + P+ + A
Sbjct: 168 RHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRFSCRLTLGAGNESWDGWGPSRRAA 227
Query: 60 EHEAAKVAL 68
E +AA+ AL
Sbjct: 228 EQDAARQAL 236
>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
Length = 256
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 38 CKVT--IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKE 95
C +T + G TY SH T + E+ ++ L K S YK LQE +
Sbjct: 131 CDMTEAMIGATYLSHGLEATRRIVEYHLRPFLERAVELGK-----SSDYKTTLQEYCAEA 185
Query: 96 AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+ P+Y + G HA F++TV VGGE+ A SKK A+ AA+ Y + +
Sbjct: 186 SLGEPIYEAEGFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAARAGYFNITQ 241
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK LQ Y + +L P+Y E GP HA F VT+ G+ H + K A+ EAA
Sbjct: 174 YKTTLQEYCAEASLGEPIYEAEGFGPDHARYFIATVTVGGELV-GHGQASSKKGAKSEAA 232
Query: 65 KVALMSLS 72
+ +++
Sbjct: 233 RAGYFNIT 240
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQE+A +P Y+ + +G HA +F + V +G VF+G +SKK+AE A+
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAE 215
Query: 144 VAYMRLKE 151
+A+ L +
Sbjct: 216 IAWRTLAD 223
>gi|444723303|gb|ELW63961.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Tupaia chinensis]
Length = 458
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQ-----------F 52
Y +L Y QK + L +EGPPH RF +V I+G+ + + +
Sbjct: 9 FYIEELNKYRQKHGVILDYREVHKEGPPHDRRFTFQVIINGRAFSAAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
++ E V +SL+ + S+ Y ++ QKE A+ Y +S +
Sbjct: 69 KIAVEILNKENEPVCSLSLTTTDTSEGSSIGNYIGLVNRYTQKEKLAVN-YEQYESNDHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQG 157
F ++G + + +K++A+ AAK AY+R L E NP G
Sbjct: 128 PQRFHCKCKIGQKEYGHGSGSTKQEAKQLAAKCAYLRILSEENPKNG 174
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
DD V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 688 MTSDDQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 747
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 748 RWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 628 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 686
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
DD V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 687 MTSDDQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 746
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 747 RWFPAVCAHSKKQGKQEAADAALRVL 772
>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
Length = 236
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 130
L+K DD V YK++LQE Q+ LP Y T++ G +H F + V G V +
Sbjct: 155 LEKVGTDDLVQDYKSLLQEFTQQAFKCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGM 214
Query: 131 AKSKKQAEMSAAKVAYMRLKE 151
KSKK+AE AAK A++RL E
Sbjct: 215 GKSKKEAEQHAAKEAFLRLTE 235
>gi|354491534|ref|XP_003507910.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Cricetulus griseus]
Length = 452
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y QK + + GPPH RF +V I+G+ + + T +EA++ A
Sbjct: 8 FYMDKLNKYHQKHKVMITYKQLHITGPPHDRRFTFQVIINGEEFPEAE-GRTKQEAKNAA 66
Query: 64 AKVALMSLSLDKFQ-QDD------SVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TF 115
A++A+ L+ +K Q D S Y ++ AQKE L V + + + +P F
Sbjct: 67 AQLAVERLNENKADSQTDASEGLLSGNYIGLVNSYAQKE--NLSVNYEQCTSNTQSPQRF 124
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN-------PSQGPALVSPDIQ 166
++G + + +K++A+ SAAK AY +L E + PS PA P Q
Sbjct: 125 CCKCKIGLKTYGIGSGATKQEAKQSAAKDAYQKLSEKSSMVQSCVPSDEPAKGHPFFQ 182
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV 101
+DG H+ F L + + A + LD +K LQEL + +P
Sbjct: 143 LDGAAEFVHRLFDPLID------RAAALGAGLD---------WKTSLQELTAAQHLGVPF 187
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
Y+ + G H F + V +GG V+ SKK+AE AA+ A++R++
Sbjct: 188 YDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEAWLRIR 236
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++L +P Y GP H F +V I G+ Y + KEAE AA
Sbjct: 170 WKTSLQELTAAQHLGVPFYDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSK-KEAEQRAA 228
Query: 65 KVALMSL 71
+ A + +
Sbjct: 229 QEAWLRI 235
>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
Length = 880
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 51/192 (26%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK+QL + QK +L +P Y +RE A + C + + + Y S K AE A
Sbjct: 688 YKSQLNEFCQKFHLAIPQYRTQRE----ARGYVCTMLYNKKVYHSTVPLKNKKAAEQNVA 743
Query: 65 KVALMSLS-----------------------------------------------LDKFQ 77
+ L +++ L + +
Sbjct: 744 QYVLSTVNQAPPPTDVSGMEALQKVVNVTAQKEPDGTTTAVATTSTAIPIGSAEELLEVE 803
Query: 78 QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 137
+ YKN LQE K P+Y++K+ FV + V G F +G ++KK +
Sbjct: 804 GGPVISYKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKGCQTKKGS 863
Query: 138 EMSAAKVAYMRL 149
E SAA++A R
Sbjct: 864 EQSAARIALQRF 875
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YKNQLQ Y K P+Y ++ +F C + +DG T+ + + T K +E AA
Sbjct: 810 YKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRA-KGCQTKKGSEQSAA 868
Query: 65 KVALMSLSLDK 75
++AL + K
Sbjct: 869 RIALQRFGVLK 879
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQA 137
D+ + +KN LQE AQK+ +P Y +K++ +STV + F G K KKQ+
Sbjct: 579 DNFISFKNSLQEFAQKKGIPVPRYFSKKA----QIGMMSTVVISDHKFHSTGLHKDKKQS 634
Query: 138 EMSAAKVAYMRL 149
E +AA A +L
Sbjct: 635 EQNAAWFALKKL 646
>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
Length = 838
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 66/137 (48%), Gaps = 28/137 (20%)
Query: 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL-----------MSLSLDKFQQDDSV 82
S C+VT+ QTY S K+AE +AA+VAL +SLS++++ V
Sbjct: 352 SLVSCEVTVGEQTYRSTIVTSKPKDAEQDAARVALVELGQSGDEEPVSLSVEEY----FV 407
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK---------S 133
YKNVLQE QK P Y T + E P F++ + G+ K S
Sbjct: 408 NYKNVLQEHCQKTGLHSPDYETTKIKED-PPQFIAWLTYKA---IGKSKKYLSESLIHTS 463
Query: 134 KKQAEMSAAKVAYMRLK 150
K+AE SAAKVA + LK
Sbjct: 464 AKKAEQSAAKVACLDLK 480
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 76/198 (38%), Gaps = 53/198 (26%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER--EGPPH-ASRFKCKVTIDGQTYESHQFFPT-LKEAE 60
YKN LQ + QK L P Y + E PP + K + Y S T K+AE
Sbjct: 409 YKNVLQEHCQKTGLHSPDYETTKIKEDPPQFIAWLTYKAIGKSKKYLSESLIHTSAKKAE 468
Query: 61 HEAAKVALMSLSL--------------------------------------------DKF 76
AAKVA + L L
Sbjct: 469 QSAAKVACLDLKLALPEPIRILPKPMKSTQPTPPKEKELMQPPDNSDEKSQTHSPPAGNQ 528
Query: 77 QQDDSVLYKNVLQELAQKEAYALPVYNTK--QSGESHAPTFVSTVEVGGEV-FSGQGA-- 131
Q DD + YKN+LQE QK + P Y + Q + T ++ +G V +S +G
Sbjct: 529 QHDDFINYKNILQEHCQKNRFDTPKYESTKIQDNPAQFTTVLTYKTLGNTVKYSSEGLTH 588
Query: 132 KSKKQAEMSAAKVAYMRL 149
+KK++E SAAKVA + L
Sbjct: 589 SNKKESEQSAAKVACLGL 606
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 31 PHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------SLDKFQQDDSVL 83
PH FK V +G+T+ES F TL+ AEH AA+VAL L SL D++ +
Sbjct: 55 PHG--FKATVNFNGETFESPAFCSTLRLAEHAAAEVALNELSKRGPSSSLAAKVLDETGI 112
Query: 84 YKNVLQELAQK 94
YKN+LQE A +
Sbjct: 113 YKNLLQETAHR 123
>gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2
[Mesocricetus auratus]
Length = 473
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 13/184 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y QK + + GPPH RF +V IDG+ + + T +EA++ A
Sbjct: 8 FYMDKLNKYHQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAE-GKTKQEAKNAA 66
Query: 64 AKVALMSLSLDKFQQDDSVL-------YKNVLQELAQKEAYALPVYNTKQSGESHAP-TF 115
AK+A+ +L+ +K L Y ++ AQKE L V + + + +P F
Sbjct: 67 AKLAVDTLNANKANSHTDALEGSFTGNYIGLVNSYAQKE--KLSVNYQQCAFNTQSPQRF 124
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSS 175
+G + + +K++A+ AAK AY +L P S L + + SS+
Sbjct: 125 CYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKL--PEKSSMNGLRENKRKPRVKLSSND 182
Query: 176 LQSN 179
+Q N
Sbjct: 183 VQRN 186
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 37/185 (20%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K QL S+ K L E GP H RF +V ++G+ Q K AE+ AAK
Sbjct: 7 KGQLISFCTKNGLSYQFKKVESTGPSHDPRFTFQVFVNGEKLGEGQD-KKKKGAEYMAAK 65
Query: 66 VALMSLSLDK----------FQQDDSVL-------------------------YKNVLQE 90
+AL +L + +QD S + Y +L E
Sbjct: 66 MALSTLKERENSAATVIQTTSEQDSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHE 125
Query: 91 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
L QK + + + G+ H P F +G E F K+KK+A+ AA +A + LK
Sbjct: 126 LCQKHTLIVTFLDERH-GQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
Query: 151 EPNPS 155
P+
Sbjct: 185 SKYPN 189
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 629 SCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
DD V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 688 MLSDDQVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 747
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 748 RWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
Length = 231
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQEL Q + LPVY T G F++T+++ +++S SKK AE AAK
Sbjct: 162 YKTKLQELTQDKFKQLPVYETTTVG----GKFITTLKINNKIYSKAKGSSKKDAEKLAAK 217
Query: 144 VAYMRLKEP 152
+AY +LKE
Sbjct: 218 IAYEKLKEE 226
>gi|334303194|gb|AEG75818.1| eukaryotic translation initiation factor 2 alpha kinase 2 variant 2
[Mesocricetus auratus]
Length = 527
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y QK + + GPPH RF +V IDG+ + + T +EA++ A
Sbjct: 8 FYMDKLNKYHQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAE-GKTKQEAKNAA 66
Query: 64 AKVALMSLSLDKFQQDDSVL-------YKNVLQELAQKEAYALPVYNTKQSGESHAP-TF 115
AK+A+ +L+ +K L Y ++ AQKE L V + + + +P F
Sbjct: 67 AKLAVDTLNANKANSHTDALEGSFTGNYIGLVNSYAQKE--KLSVNYQQCAFNTQSPQRF 124
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+G + + +K++A+ AAK AY +L E
Sbjct: 125 CYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKLPE 160
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 682 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 740
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
D+ V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 741 MASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 800
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 801 RWFPAVCAHSKKQGKQEAADAALRVL 826
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
D+ V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 688 MASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 747
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 748 RWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
D+ V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 688 MASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 747
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 748 RWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+KN+LQ Y Q+K + +P Y E P + K V ++G+ +ES +P KE+E +AA
Sbjct: 50 FKNKLQEYCQQKKIAIPKY--ELIPDPANNDKKSAVIVNGERFESVGAYPKKKESEMDAA 107
Query: 65 KVALMSLSLDKFQQDD----------SVLYKNV----------------LQELAQKEAYA 98
VAL +L + Q+ + + KN L E+ Q+ +
Sbjct: 108 CVALKALQTAEAQKAPKYAAEQPVAITAVAKNCKPEKEKESTEENMIGQLNEVCQRNSVP 167
Query: 99 LPVYNTK--QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
P YN + +SGE V V E F ++KK AE + AK A +L
Sbjct: 168 APQYNERGDKSGEFSCDVKFKMVVVLNENF-----ENKKCAEKAVAKAALTKL 215
>gi|348542300|ref|XP_003458623.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 714
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G+VF G G +KK+A++SA
Sbjct: 89 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQVFEGLGP-TKKKAKLSA 146
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN + + + A D++S
Sbjct: 147 AEKALCSFVQFPNALEAHVAMGRTLSAHTDFTS 179
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V + F G G ++KK A+ AA+ A L ++P P
Sbjct: 266 ESGESHAKNFVMSVTVDSQNFQGSG-RNKKLAKTRAAQAALSALFKIQLDQTPSRQPIPR 324
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 325 EGLQLHQPQVLADA 338
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ F +SKK+AE AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAAS 233
Query: 144 VAYMRLKEPNPSQGPALVSPD 164
A+ L E S +V PD
Sbjct: 234 TAWSALSEAAQS----VVLPD 250
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK++LQ + Q+ +P Y EG HAS+F+ VT+ G T + K+AE E
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 64 AKVAL 68
AK+AL
Sbjct: 103 AKIAL 107
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQAEMSA 141
+YK+ LQ+ Q+ Y +P Y + G HA F S V +GG +GQG + +K AE
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 142 AKVA 145
AK+A
Sbjct: 103 AKIA 106
>gi|405980874|ref|ZP_11039203.1| ribonuclease III [Actinomyces neuii BVS029A5]
gi|404392893|gb|EJZ87950.1| ribonuclease III [Actinomyces neuii BVS029A5]
Length = 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 44 GQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF-QQDDSVLYKNVLQELAQKEAYALPVY 102
G TY +H+ T K E L++ LD+ Q+ + +K LQELA + PVY
Sbjct: 127 GATYLTHKLEKTRKVVED------LLADLLDQVVQRGIGMDWKTTLQELAAALELSSPVY 180
Query: 103 NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVS 162
+ +G HA F + V G+V + A SKK A+ AA+ A L++ P
Sbjct: 181 ESTSTGPDHARVFTAQALVDGQVVASGTASSKKLAQHEAARAAVEELQKRYDIHTPLGFD 240
Query: 163 PDIQA 167
D++A
Sbjct: 241 VDVEA 245
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ L P+Y GP HA F + +DGQ S + K A+HEAA
Sbjct: 162 WKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVASGT-ASSKKLAQHEAA 220
Query: 65 KVALMSL 71
+ A+ L
Sbjct: 221 RAAVEEL 227
>gi|374339789|ref|YP_005096525.1| ribonuclease III [Marinitoga piezophila KA3]
gi|372101323|gb|AEX85227.1| ribonuclease III [Marinitoga piezophila KA3]
Length = 240
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL QK+ P YN +Q G H TFV V++ G+V+ KSKK AE AA
Sbjct: 169 YKTRLQELTQKDLKIRPEYNLVRQDGPPHNRTFVVEVKINGKVYGKGIGKSKKVAEQLAA 228
Query: 143 KVAYMRLK 150
K A R K
Sbjct: 229 KEACERFK 236
>gi|417402454|gb|JAA48074.1| Putative interferon-induced double-stranded rna-activated protein
kinase [Desmodus rotundus]
Length = 536
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY------------- 47
++ + L Y+QK N+ + R GPPH SRFK +V ID + Y
Sbjct: 6 IRSFFIEALNKYSQKNNVNVNYRELSRTGPPHDSRFKFQVIIDEKEYPPAEGKSKKEAKD 65
Query: 48 -ESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQ 106
+ F LKE E +A L + + D + Y + L QK ++ Y +
Sbjct: 66 AAAKLAFEALKEKEEVSAVSLLTTDTSDDLSMGN---YVGQINRLTQKANLSVN-YQQHE 121
Query: 107 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
S + F +G + +S +K++A+ AAK+AY ++
Sbjct: 122 SYTNGPERFSCKCIIGQKEYSSAVGSTKQRAKQLAAKLAYEKI 164
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ 78
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L +
Sbjct: 577 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAIKALHGEATSS 635
Query: 79 DDSV-----------------LYKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFV 116
DD V Y N L E A+ +A QSG H P FV
Sbjct: 636 DDQVGLFSCSKHTVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFV 695
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+VGG F A SKKQ + AA A L
Sbjct: 696 YQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 728
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y+ +SG H TF +TV V GE + +SKK+AE AA+
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 144 VAYMRLK---EPNPSQG 157
A+ ++ E + +QG
Sbjct: 224 SAWKAIRARSEQSAAQG 240
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T + L +P Y + GP H F+ V + G++Y + + KEAE +AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGE-GRSKKEAEQQAA 222
Query: 65 KVALMSL 71
+ A ++
Sbjct: 223 ESAWKAI 229
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y+ +SG H TF +TV V GE + +SKK+AE AA+
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 144 VAYMRLK 150
A+ +K
Sbjct: 224 SAWKAIK 230
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T + L +P Y + GP H F+ V + G++Y + + KEAE +AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGE-GRSKKEAEQQAA 222
Query: 65 KVA 67
+ A
Sbjct: 223 ESA 225
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEASNS 687
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
D+ V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 688 MASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 747
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 748 RWFPAVCAHSKKQGKQEAADAALRVL 773
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQE A PVY +G H+ TF +TV+VGG V + SKKQAEM+AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 145 AYMRL 149
A+ L
Sbjct: 223 AWTAL 227
>gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
Length = 690
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 64/171 (37%), Gaps = 21/171 (12%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFK--CKVTIDGQTYES-------------- 49
+N+LQ Y P P Y GPPH F+ V + G+T S
Sbjct: 515 RNRLQEYCAGAKHPAPTYEVSERGPPHDRVFEAVATVRVGGRTISSPSASARSKKEAEKA 574
Query: 50 -HQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSG 108
L E A + D + + L+ +K + +P + K G
Sbjct: 575 AAVAMLVLMGLEEPGAADPPSPAAAAPPAADVDDMARTRLETACRKRKWPMPRFEVKGDG 634
Query: 109 ESHAPTF--VSTVEVGGE--VFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155
SHAPTF V+ + GG V +SKK+AE AA+ ++ P S
Sbjct: 635 PSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVAARAMLDLVERPGAS 685
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 37/185 (20%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K QL S+ K L E GP H RF +V ++G+ Q K AE AAK
Sbjct: 7 KGQLISFCTKNGLSYQFKKVEATGPSHDPRFTFQVFVNGEKLGEGQD-KKKKGAECMAAK 65
Query: 66 VALMSLSLDK----------FQQDDSVL-------------------------YKNVLQE 90
+AL +L + +QD S + Y +L E
Sbjct: 66 MALSTLKERENSAATVIQTTSEQDSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHE 125
Query: 91 LAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
L QK + + + G+ H P F +G E F K+KK+A+ AA +A + LK
Sbjct: 126 LCQKHTLIVTFLDERH-GQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
Query: 151 EPNPS 155
P+
Sbjct: 185 SKYPN 189
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL---SLDK 75
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L + +
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 76 FQQDDSVL-------YKNV-----LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG 123
D+ V Y N L E A+ +A QSG H P FV +VGG
Sbjct: 393 MASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 452
Query: 124 EVFSGQGAKSKKQAEMSAAKVAYMRL 149
F A SKKQ + AA A L
Sbjct: 453 RWFPAVCAHSKKQGKQEAADAALRVL 478
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 ALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEV 125
A+M + D+ ++D YK +LQE+ QK + PVY + SG H TF V V G +
Sbjct: 168 AIMVVLDDRHKKD----YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNI 223
Query: 126 FSGQGAKSKKQAEMSAAKVAY 146
F +KK+AE +AA AY
Sbjct: 224 FGPASGANKKEAEQNAACAAY 244
>gi|432935587|ref|XP_004082035.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 744
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G+VF G G +KK+A+++A
Sbjct: 123 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQVFEGMGP-TKKKAKLNA 180
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 181 AEKALRSFVQFPNASEAHMAMGRTLTVNTDFTS 213
>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
Length = 720
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
geoffroyi]
Length = 552
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+K +L Y QK+ + L GPPH RF +V IDG+ + + + KEA + A
Sbjct: 9 FFKEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAE-GRSKKEATNAA 67
Query: 64 AKVALMS----------LSLDKFQQDDSVL---YKNVLQELAQKEAYALPVYNTKQSGES 110
AKVA+ LSL D + Y ++ +AQK+ + Y SG +
Sbjct: 68 AKVAVEILNRENKAVSPLSLTPTDSSDRLSIGNYIGLINTIAQKKRLTVN-YEPCVSGMN 126
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F +VG + + +K++A+ AAK+AY+++
Sbjct: 127 GPEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165
>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
Length = 720
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
Length = 689
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 62 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 119
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + AD++S
Sbjct: 120 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 152
>gi|344306623|ref|XP_003421985.1| PREDICTED: double-stranded RNA-specific editase 1-like [Loxodonta
africana]
Length = 701
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP F+ +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFIMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 194
A+ A + PN S+ + + D++S Q++ L + +T RL
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETPDRL 186
>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
Length = 233
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
+K +LQ TQ+ + LP+Y+ E GP HA F +V + DG+ + + P LK AE E
Sbjct: 159 FKTKLQEATQRISKGLPVYALEDSYGPEHAKIFSVRVDLPDGRQFRASG--PGLKRAEQE 216
Query: 63 AAKVALMSLS 72
AA VAL++L
Sbjct: 217 AAHVALVALG 226
>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
Length = 159
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE+ Q LPVY+T S F++T+ + G+++S SKK++E AAK
Sbjct: 91 YKTKLQEITQDRFKQLPVYDT----VSQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAK 146
Query: 144 VAYMRLKEP 152
+AY +LKE
Sbjct: 147 IAYEKLKEE 155
>gi|345886949|ref|ZP_08838163.1| ribonuclease III [Bilophila sp. 4_1_30]
gi|345037798|gb|EGW42307.1| ribonuclease III [Bilophila sp. 4_1_30]
Length = 233
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
+K +LQ TQ+ + LP+Y+ E GP HA F +V + DG+ + + P LK AE E
Sbjct: 159 FKTKLQEATQRISKGLPVYALEDSYGPEHAKIFSVRVDLPDGRQFRASG--PGLKRAEQE 216
Query: 63 AAKVALMSLS 72
AA VAL++L
Sbjct: 217 AAHVALVALG 226
>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
tropicalis]
gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
Length = 719
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP F+ TVEV G+VF G G +KK+A+++A
Sbjct: 97 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFIMTVEVNGQVFEGSGP-TKKKAKLNA 154
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 155 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 187
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V E F G G ++KK A+ AA+ A L ++P PS
Sbjct: 273 ESGESHAKNFVMSVTVDNETFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 331
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 332 EGLQLHLPQVLADA 345
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +SG HA TF + V +G + + +SKK+AE AA+
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAE 229
Query: 144 VAYMRLKEPNP 154
A+ L+ +P
Sbjct: 230 TAWKALRAAHP 240
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ + + +P Y GP HA F+ +V I TY H + KEAE +AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTY-GHGIGRSKKEAEQQAA 228
Query: 65 KVALMSL------SLDKFQQ 78
+ A +L S+D QQ
Sbjct: 229 ETAWKALRAAHPDSIDPSQQ 248
>gi|432098534|gb|ELK28243.1| Double-stranded RNA-specific editase 1 [Myotis davidii]
Length = 674
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVISVEVNGQVFEGSGPTKKKAKLQAAE 135
Query: 143 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMP 202
K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 136 KALRSFVQFPNASEAHLAMGRSLSANTDFTSD--QADFPDALFNGFETPDR--------- 184
Query: 203 KVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASS 242
+EV Y S FSSS DLS S+
Sbjct: 185 --------------SEVPFYMGSNGGDDSFSSSGDLSLSA 210
>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
Length = 698
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 74 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 131
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 132 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 164
>gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Xenopus (Silurana) tropicalis]
Length = 534
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 69/182 (37%), Gaps = 37/182 (20%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL 68
L + +KNL +EG PH F + I + + Q + K AE AA++ L
Sbjct: 8 LNKFCARKNLQYEFRLISKEGSPHDPLFTVHLFIKNEMFGEGQG-KSKKAAEKIAARIGL 66
Query: 69 MSL----------------SLD--------------------KFQQDDSVLYKNVLQELA 92
+L SLD + + S+ Y +L EL
Sbjct: 67 AALQNQENPPLAQQPTAAASLDTGLSPLQGSAATAEPSVNGSENHKMSSINYIGILNELC 126
Query: 93 QKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152
QK++++ + + G H P F EV + K+KKQA AA +A LK
Sbjct: 127 QKKSWSRNFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKAAFLALRLLKTE 186
Query: 153 NP 154
NP
Sbjct: 187 NP 188
>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
Length = 233
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|348507385|ref|XP_003441236.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
Y +L Y K + + +GPPH F + IDG+ Y S + T KEA+ AA
Sbjct: 6 YVGKLNEYAHKWHSGVSYEEVGSDGPPHDKVFNLRAVIDGKAYPSGEG-KTKKEAKQNAA 64
Query: 65 KVALMSLSLDKFQQDDSVLYKN-------------------------VLQELAQKEAYAL 99
K AL SLS + DSV +N ++ QK +
Sbjct: 65 KKALESLS--QLGHQDSVESRNNAAEASVQVVLSSKDTSFTETNFIGLVNHYCQKTKRSH 122
Query: 100 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+ G SH P F +++ + + KS K+A+ +AA++A+ L+E
Sbjct: 123 SYDEVGRDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQE 174
>gi|63101747|gb|AAH95026.1| Adarb1 protein, partial [Danio rerio]
Length = 233
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 93 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 150
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + AD++S
Sbjct: 151 AEKALRSFVQFPNASEAHLAMGRTLTVNADFTS 183
>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 175 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 232
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 233 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 265
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 143
K LQELA P Y +SG H +F++T VG E F +GQG KSK++AE SAAK
Sbjct: 141 KTALQELAASLNLPSPEYEISESGPDHDKSFIATALVGSERFETGQG-KSKREAEQSAAK 199
Query: 144 VAYMRL 149
+A+ L
Sbjct: 200 LAHEHL 205
>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
Length = 750
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 126 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQIFEGMGP-TKKKAKLNA 183
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 184 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 216
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE+ Q LPVY T S F++T+ + G+++S SKK++E AAK
Sbjct: 162 YKTKLQEITQDRFKQLPVYETV----SQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAK 217
Query: 144 VAYMRLKEP 152
+AY +LKE
Sbjct: 218 IAYEKLKEE 226
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YK +LQ TQ + LP+Y E ++F + IDG+ Y + F KE+E AA
Sbjct: 162 YKTKLQEITQDRFKQLPVY----ETVSQKNKFITTLYIDGKIYSKAEGFSK-KESEKLAA 216
Query: 65 KVALMSLSLDKFQQ 78
K+A L ++F +
Sbjct: 217 KIAYEKLKEEEFHE 230
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQE A ++ PVY+ SG H+ F + V VG V + SKKQAEM+AA
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 145 AYMRLK 150
A+ RL+
Sbjct: 228 AWTRLE 233
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 142
+K LQEL E +P Y ++SG H TF +TV V G+ + SG+G +SKK+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEG-RSKKEAEQQAA 222
Query: 143 KVAYMRLK 150
+ A+ ++
Sbjct: 223 ESAWKAIR 230
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T + L +P Y E GP H F+ V + GQTY S + + KEAE +AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGE-GRSKKEAEQQAA 222
Query: 65 KVALMSL 71
+ A ++
Sbjct: 223 ESAWKAI 229
>gi|395851269|ref|XP_003798187.1| PREDICTED: double-stranded RNA-specific editase 1 [Otolemur
garnettii]
Length = 1168
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 544 VLPKNALMQLNEVKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 602
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + A D++S
Sbjct: 603 EKALRSFVQFPNASEAHLAMGRTLSANTDFTS 634
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 721 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 779
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 780 EGLQLHLPQVLADA 793
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A++ +K
Sbjct: 230 SAWLSIK 236
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQE+A + + P Y+ + +G H F +TV VG V +G G+ SKKQAEM+AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTGTGS-SKKQAEMAAALT 221
Query: 145 AYMRL 149
A+ L
Sbjct: 222 AWREL 226
>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
Length = 216
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q A+P+Y K +SG HA F + + +++ A SKKQAE A
Sbjct: 145 YKSALQELTQARFKAIPIYALKSESGPDHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCA 204
Query: 143 KVAYMRLKEPNP 154
+VAY +L + P
Sbjct: 205 QVAYKQLSKELP 216
>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
Length = 224
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q A+P+Y K +SG HA F + + +++ A SKKQAE A
Sbjct: 153 YKSALQELTQARFKAIPIYALKSESGPDHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCA 212
Query: 143 KVAYMRLKEPNP 154
+VAY +L + P
Sbjct: 213 QVAYKQLSKELP 224
>gi|395532085|ref|XP_003768102.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Sarcophilus harrisii]
Length = 1151
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 99/271 (36%), Gaps = 63/271 (23%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL-----KEAEHEA 63
L + QK +EGP H +FK V + QT FPT+ K A+ A
Sbjct: 564 LMEHVQKSGSTCEFLLISQEGPAHDPKFKYCVKMGSQT------FPTMMANSKKAAKQMA 617
Query: 64 AKVALMSL-------------SLDKF-------------------QQDDSVLYKNV---- 87
A+VA+ +L ++D F + D + Y N
Sbjct: 618 AEVAVKALCGDPNLTPWSRQQNIDYFSDPPAHFAGLGEPTPSKAKKVGDLIKYLNANPIS 677
Query: 88 -LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
L E A+ +A QSG H P F+ +VGG F A SKKQ + AA A
Sbjct: 678 GLFEYARSNGFAAEFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAAL 737
Query: 147 M----------RLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVF 196
R+ S+ P L + Q S S++TA + HN+ GR +
Sbjct: 738 RVLIGETERAKRIGGLGISELP-LTGSTLHDQVAMLSHQCFSSLTAPIQHNL--LGRKIL 794
Query: 197 NPNSMPKVQAE--EIRELTTVNTEVAGYDLS 225
M K + + T N V G +LS
Sbjct: 795 AAIIMKKSDDDLGLVVSFGTGNRCVKGEELS 825
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 36/163 (22%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD----- 80
E+ GP H RFK + I G+ + + + K A +AA A+ L + Q++
Sbjct: 469 EQTGPSHEPRFKYQAVISGRRFPPAEA-GSKKLARQDAAAKAMTVLFQESGAQEEGFSPG 527
Query: 81 -------------------------SVLY-KN---VLQELAQKEAYALPVYNTKQSGESH 111
S+L+ KN VL E QK Q G +H
Sbjct: 528 LSRPMEEGPEKPSVPECEPSPISPSSLLFGKNPISVLMEHVQKSGSTCEFLLISQEGPAH 587
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL-KEPN 153
P F V++G + F A SKK A+ AA+VA L +PN
Sbjct: 588 DPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAVKALCGDPN 630
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQELA AY +P Y ++G H F + +G EV SKK+AE AA+
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVIGEEVLGEGVGHSKKEAEQRAAE 232
Query: 144 VAYMRL 149
VA+ L
Sbjct: 233 VAWTEL 238
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
K +LQ L Q+ +A+P Y T+ SG F+S V V G+ F G+ A+SKKQAE
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSGSQ----FISCVVVRGKKFIGEPAESKKQAE 1115
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 6 KNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ + Q + LPLP Y E REGP H F +V++ G E+ P+ + AE AA
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAAS-GPSKRIAEQAAA 240
Query: 65 KVALMSLSLD 74
+ L L+LD
Sbjct: 241 RCLLERLTLD 250
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ LP Y+ + + G +H P F V V G SK+ AE +AA+
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAASGPSKRIAEQAAAR 241
Query: 144 VAYMRL 149
RL
Sbjct: 242 CLLERL 247
>gi|365825121|ref|ZP_09367079.1| hypothetical protein HMPREF0045_00715 [Actinomyces graevenitzii
C83]
gi|365258496|gb|EHM88502.1| hypothetical protein HMPREF0045_00715 [Actinomyces graevenitzii
C83]
Length = 275
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 44 GQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVY 102
G TY +H F T + L+S L++ Q + +K L EL P Y
Sbjct: 137 GATYLTHGFNATRPVVQ------VLVSGFLNRAQVRGGAMDWKTSLLELCNAHGLGAPNY 190
Query: 103 NTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALV 161
+ G H+ F + VG E+ SG+G+ SKK AE+ AA+ AY RL G AL
Sbjct: 191 EVEGFGPDHSRRFRACARVGDHELGSGEGS-SKKAAELVAAESAYARLLAEKGDAGLALP 249
Query: 162 SPDIQAQADYSSSSLQSNVTAD 183
+ AD + SL V A+
Sbjct: 250 GVNEALAADQAHGSLLGGVPAN 271
>gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Ailuropoda melanoleuca]
Length = 741
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 83 LYKNVLQELAQKE---AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G +KK+A++
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKL 132
Query: 140 SAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
AA+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 133 HAAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca]
Length = 718
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 83 LYKNVLQELAQKE---AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G KK
Sbjct: 68 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLH 123
Query: 140 SAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+A K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 124 AAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 175
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 244 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 302
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 303 EGLQLHLPQVLADA 316
>gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Ailuropoda melanoleuca]
Length = 701
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 83 LYKNVLQELAQKE---AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G +KK+A++
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKL 132
Query: 140 SAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
AA+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 133 HAAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|410969853|ref|XP_003991406.1| PREDICTED: double-stranded RNA-specific editase 1 [Felis catus]
Length = 701
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 83 LYKNVLQELAQKE---AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G KK
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLH 133
Query: 140 SAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+A K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
K +LQ L Q+ +A+P Y T+ SG F+S V V G+ F G+ A+SKKQAE
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSGSQ----FISCVVVRGKKFIGEPAESKKQAE 998
>gi|336452822|ref|YP_004607288.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332849|emb|CCB79576.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 223
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 70 SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSG 128
+LSL + D YK+ LQEL Q +P Y K +SG HA F + + +++
Sbjct: 143 NLSLQELFMD----YKSALQELTQARFKVVPTYTLKNESGPDHAKQFEMQIFILNKLYGT 198
Query: 129 QGAKSKKQAEMSAAKVAYMRLKE 151
A SKKQAE A+VAY +LKE
Sbjct: 199 CKASSKKQAEQLCAQVAYEQLKE 221
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNPSQGPALVSPDIQA 167
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNPSQGPALVSPDIQA 167
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQELA K P Y + SG H+ F ++V + GEV S SKK AEM+AA
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVISTGIGSSKKHAEMAAALE 223
Query: 145 AYMRLKEP 152
A+ L+ P
Sbjct: 224 AWTLLQAP 231
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 71 LSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 130
L L+ + ++ +K LQEL +P Y + SG HA TF + V V GE + G
Sbjct: 154 LMLESASRGAALDWKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSE 213
Query: 131 AKSKKQAE 138
+SKKQAE
Sbjct: 214 GRSKKQAE 221
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNPSQGPALVSPDIQA 167
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|335300848|ref|XP_003132836.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase 1-like [Sus scrofa]
Length = 650
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ AA
Sbjct: 81 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHAA 138
Query: 143 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
+ A + PN S+ + + A AD++S
Sbjct: 139 EKALRSFVQFPNASEAHLAMGRTLSANADFTS 170
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNPSQGPALVSPDIQA 167
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens]
Length = 711
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLDEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 190
K ++ PN S+ + + D++S Q++ L + ++T
Sbjct: 136 EKALRYFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGLET 182
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|345795485|ref|XP_544931.3| PREDICTED: double-stranded RNA-specific editase 1 [Canis lupus
familiaris]
Length = 701
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 83 LYKNVLQELAQKE---AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
L KN L +L + + YAL Q+G HAP FV +VEV G+VF G G KK
Sbjct: 78 LPKNALMQLNEIKPGLQYAL----LSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLH 133
Query: 140 SAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+A K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
Length = 244
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE QK+ + P Y+ K++G H TF V++ G+V+ K+KK+AE AA
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAA 232
Query: 143 KVAYMRL 149
+AY +L
Sbjct: 233 GLAYRKL 239
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y QK+ P YS ++ GP H F +V IDG+ Y + KEAE A
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGK-GKNKKEAEQHA 231
Query: 64 AKVALMSLS 72
A +A L+
Sbjct: 232 AGLAYRKLT 240
>gi|338720836|ref|XP_001489941.2| PREDICTED: double-stranded RNA-specific editase 1-like [Equus
caballus]
Length = 700
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ AA
Sbjct: 77 LPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHAA 134
Query: 143 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+ A + PN S+ + + A D++S Q++ L + +T R
Sbjct: 135 EKALRSFVQFPNASEAHLAMGRTLSANTDFTSD--QADFPDTLFNGFETPDR 184
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 253 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 311
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
rerio]
Length = 750
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 125 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQLFEGSGP-TKKKAKLNA 182
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 183 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 215
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQE QK+ PVY K+SG H F TV + G + KSKK+AE +AA
Sbjct: 179 YKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQGKSKKEAEQNAA 238
Query: 143 KVAYMRL 149
K AY L
Sbjct: 239 KAAYEEL 245
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 131
LD+ Q + L +K LQELA + Y P Y +G H+ F + + GE
Sbjct: 170 LDRAGQLGAGLDWKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVG 229
Query: 132 KSKKQAEMSAAKVAYMRLKEPNPS 155
++KK+AE AA +A+ L E PS
Sbjct: 230 RTKKEAEQKAASLAWQALAERGPS 253
>gi|348511509|ref|XP_003443286.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 747
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV TVEV G++F G G +KK+A+++A
Sbjct: 123 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMTVEVNGQMFEGMGP-TKKKAKLNA 180
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 181 AEKALRSFVQFPNASEAHLAMGRTLTVNTDFTS 213
>gi|410955477|ref|XP_003984379.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Felis catus]
Length = 542
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+ +L Y QK N+ L + GPPH RFK +V ID + Y + + KEA + A
Sbjct: 9 FFIEELNVYCQKHNMVLKYQELSKTGPPHNLRFKYQVIIDEREYPEAE-GKSKKEARNAA 67
Query: 64 AKVAL----------MSLSLDKFQQDDSVL------YKNVLQELAQKEAYALPVYNTKQS 107
AK+A+ S+SL + + + + LAQKE ++ Y +
Sbjct: 68 AKLAIEILNKENKAVSSVSLPTTHSSEGLGLGSTGNFIGRINRLAQKEQLSVN-YEQCEL 126
Query: 108 GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDI 165
E F ++G + + +K++A+ SAAK+AY ++ S L I
Sbjct: 127 KEPGPERFHYRCKIGQKEYGIGVGSTKQEAKQSAAKLAYEQILSEKTSMKADSVLAGSLI 186
Query: 166 QAQADYSSSSLQSNVTA 182
+ D S++L +++A
Sbjct: 187 TSPGDSGSNTLVKSISA 203
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 78 QDDSVL-YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
Q+DS+ YK LQE Q+E LPVY Q G H F V + G+++ +SKK
Sbjct: 158 QEDSIQDYKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKK 217
Query: 136 QAEMSAAKVAYMRL 149
+AE AAK A RL
Sbjct: 218 EAEQKAAKDALSRL 231
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y Q++ LP+Y ++ GP H F V I G+ Y + KEAE +A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGRSKKEAEQKA 223
Query: 64 AKVALMSLS 72
AK AL L+
Sbjct: 224 AKDALSRLA 232
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 243
Query: 144 VAYMRLKE 151
A+ +K+
Sbjct: 244 SAWRSIKD 251
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q++ L Y Q G +H+ FVS V + GE KSKK+AE AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 143 KVAYMRLK 150
++A LK
Sbjct: 232 EIALKNLK 239
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+QLQ Q+ + L Y +E GP H+ F +V+++G+ + + KEAE A
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGT-GKSKKEAEQHA 230
Query: 64 AKVALMSL 71
A++AL +L
Sbjct: 231 AEIALKNL 238
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV +GG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNPSQGPALVSPDIQA 167
A+ L + GP + + D+ A
Sbjct: 233 TAWNALSD----AGPDVAADDVSA 252
>gi|126307762|ref|XP_001373191.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Monodelphis domestica]
Length = 1131
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 65/175 (37%), Gaps = 40/175 (22%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL-----KEAEHEA 63
L + QK +EGP H +FK V + QT FPT+ K A+ A
Sbjct: 552 LMEHVQKNGSTCEFLLISQEGPAHDPKFKYCVKMGSQT------FPTMMANSKKAAKQMA 605
Query: 64 AKVALMSLSLDKF------------------------QQDDSVLYKNV-----LQELAQK 94
A+VA+ +L D + D + Y N L E A+
Sbjct: 606 AEVAVKALCGDSSLTPWTKQVYTSKLVSPSATPGKAKKIGDLIKYLNANPISGLFEYARS 665
Query: 95 EAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+A QSG H P F+ +VGG F A SKKQ + AA A L
Sbjct: 666 NGFAAEFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEAADAALRVL 720
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 35/158 (22%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD----- 80
E+ GP H RFK + I G+ + + + K A +AA A+ L + Q++
Sbjct: 457 EQSGPSHEPRFKYQAVISGRRFPPAEA-GSKKLARQDAAAKAMTILFQESGAQEEVTSEG 515
Query: 81 -------------------------SVLY-KN---VLQELAQKEAYALPVYNTKQSGESH 111
S+L+ KN VL E QK Q G +H
Sbjct: 516 LPPPVEEEPEQPSAAESEPCPISPSSLLFGKNPISVLMEHVQKNGSTCEFLLISQEGPAH 575
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
P F V++G + F A SKK A+ AA+VA L
Sbjct: 576 DPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAVKAL 613
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 61 HEAAKVALMSLSLDKF----QQDDSVLYKNVLQELAQKEAYALPVYNTK-QSGESHAPTF 115
+ A+ +++++ DK QQ+ YK+ LQ+L QK +LP Y K ++G H TF
Sbjct: 131 YNEARRFIITIASDKIDEVIQQNIFTDYKSELQKLTQKIFESLPDYKVKDETGPEHDKTF 190
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
+ + + + KSKK+AE AAK A++ L E
Sbjct: 191 IVDLYINDRYYCSGSGKSKKKAEQDAAKKAFLMLSE 226
>gi|351711673|gb|EHB14592.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Heterocephalus glaber]
Length = 525
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 29/168 (17%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y +L Y QK + + GPPH+ F +VTIDG+T FP K +
Sbjct: 9 FYIEELNKYHQKNGVKVSYQELSVTGPPHSLLFTFQVTIDGRT------FPEGKGRSKQD 62
Query: 64 AKVALMSLSLDKFQQDDSVL------------------YKNVLQELAQKEAYALPV--YN 103
AK A L+ D Q+ V Y ++ +AQK+ ++ Y+
Sbjct: 63 AKNAAAKLAFDVLTQEKKVGSSSSSMTKDTSEESAFGNYVGLVNRIAQKDKLSVNYEQYD 122
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
++ G F ++ +V+ A +K+ A+ AAK+A+ R+ E
Sbjct: 123 LREQGPRR---FQCKCKIEQKVYGCGTASTKQDAKQLAAKLAFDRISE 167
>gi|417404003|gb|JAA48779.1| Putative trna-specific adenosine deaminase 1 [Desmodus rotundus]
Length = 701
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAE 136
Query: 143 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
K ++ PN S+ + + A D++S Q++ L + +T R
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSANTDFTSD--QADFPDTLFNGFETPDR 185
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|405967551|gb|EKC32699.1| Double-stranded RNA-specific editase 1 [Crassostrea gigas]
Length = 687
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L QSG HAPTF+ +VEV G F GQG +KK A +SAA+
Sbjct: 79 KNALMQLNEIKP-GLEFQFVAQSGPVHAPTFIMSVEVNGTKFEGQGP-TKKAARLSAAEK 136
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 190
A + PN S+ + + D++S + +++ L +N +T
Sbjct: 137 ALKSFVQFPNASEAHKALGRQVVNDGDFTSDNAEASNDV-LFNNFET 182
>gi|418679683|ref|ZP_13240944.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418684609|ref|ZP_13245793.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740311|ref|ZP_13296689.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421092430|ref|ZP_15553172.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|421128722|ref|ZP_15588933.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|400320125|gb|EJO67998.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|409998785|gb|EKO49499.1| ribonuclease III [Leptospira kirschneri str. 200802841]
gi|410359834|gb|EKP06874.1| ribonuclease III [Leptospira kirschneri str. 2008720114]
gi|410740809|gb|EKQ85523.1| ribonuclease III [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752315|gb|EKR09290.1| ribonuclease III [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 249
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 143 KVAYMRLKEPN 153
K Y R+++ N
Sbjct: 237 KELYNRIRKKN 247
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQ-WEATGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +TV VGG+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 144 VAYMRLKEPNP 154
A+ L + P
Sbjct: 233 TAWNALSDAGP 243
>gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus]
Length = 707
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 83 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 140
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 141 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 173
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 260 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 318
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 319 EGLQLHLPQVLADA 332
>gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]
gi|68684375|sp|Q91ZS8.1|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus]
gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus]
gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus]
gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus]
Length = 711
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]
gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus]
gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus]
gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct]
Length = 701
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|433456418|ref|ZP_20414464.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
gi|432196294|gb|ELK52760.1| ribonuclease III [Arthrobacter crystallopoietes BAB-32]
Length = 224
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K +QELA Y + SG HA TFV+T+ +GG + GQG SKK+AE AA
Sbjct: 151 WKTSIQELAAARKMGSVEYAVQGSGPDHARTFVATLHIGGVAY-GQGTGHSKKEAEQEAA 209
Query: 143 KVAYMRLK 150
V++ +L+
Sbjct: 210 AVSWRQLR 217
>gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus]
Length = 717
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 83 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 140
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 141 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 173
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 260 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 318
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 319 EGLQLHLPQVLADA 332
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE Q+E LPVY Q G H F V + G+++ KSKK+AE AA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 143 KVAYMRL 149
K A RL
Sbjct: 225 KDALSRL 231
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y Q++ LP+Y ++ GP H F V I G+ Y + KEAE +A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGKSKKEAEQKA 223
Query: 64 AKVALMSLS 72
AK AL L+
Sbjct: 224 AKDALSRLA 232
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 50 HQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGE 109
HQ F L E + A + LD +K LQEL E+ +P Y+ +SG
Sbjct: 150 HQLFDPLIE------RSASLGAGLD---------WKTSLQELTAAESLGVPEYHVDESGP 194
Query: 110 SHAPTFVSTVEVGGEVFSGQGAKSKK 135
HA +FV+TV VGG+ + +SKK
Sbjct: 195 DHAKSFVATVRVGGKEYGKGTGRSKK 220
>gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus]
Length = 701
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE Q+E LPVY Q G H F V + G+++ KSKK+AE AA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 143 KVAYMRL 149
K A RL
Sbjct: 225 KDALSRL 231
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y Q++ LP+Y ++ GP H F V I G+ Y + KEAE +A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGKSKKEAEQKA 223
Query: 64 AKVALMSLS 72
AK AL L+
Sbjct: 224 AKDALSRLA 232
>gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus
norvegicus]
gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus
norvegicus]
Length = 711
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 79 DDSVL--YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
DDS+ YK LQE K+ L K+ G HA TF V++G + + K+KK
Sbjct: 161 DDSIFNDYKTKLQEYHNAKDKKILKYELVKEEGPEHAKTFTMAVKLGNRILATGVGKNKK 220
Query: 136 QAEMSAAKVAYMRLKE 151
QAE AAK AY ++K+
Sbjct: 221 QAEQDAAKAAYNKIKK 236
>gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus
norvegicus]
gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus
norvegicus]
Length = 701
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus]
gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus]
Length = 687
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 110
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 111 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus]
gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus]
Length = 677
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus]
gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus]
gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus]
Length = 695
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 71 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 129
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 130 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 161
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 248 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 306
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 307 EGLQLHLPQVLADA 320
>gi|1710075|sp|P51400.1|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus]
gi|1586827|prf||2204394A RNA-editing enzyme
Length = 711
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|331698524|ref|YP_004334763.1| ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length = 238
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 142
+K LQEL +P Y + G H TF +T VGG E+ SG G ++KK+AE AA
Sbjct: 161 WKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGDG-RTKKEAEQKAA 219
Query: 143 KVAYMRLK-EPNPSQGPAL 160
+A+ L E + S G A+
Sbjct: 220 ALAWRTLSAEADGSVGTAV 238
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y +GP H F + G+ S T KEAE +AA
Sbjct: 161 WKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGD-GRTKKEAEQKAA 219
Query: 65 KVALMSLS 72
+A +LS
Sbjct: 220 ALAWRTLS 227
>gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus
norvegicus]
Length = 695
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 71 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 128
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 129 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 161
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 248 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 306
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 307 EGLQLHLPQVLADA 320
>gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus
norvegicus]
gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus
norvegicus]
Length = 677
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Nomascus leucogenys]
Length = 729
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 340
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|426393327|ref|XP_004062978.1| PREDICTED: double-stranded RNA-specific editase 1 [Gorilla gorilla
gorilla]
Length = 843
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 174
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 175 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 206
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 351
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]
gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens]
Length = 674
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE A K LP+Y T +QSG SHAP FV V VG E + Q A +K+ AE AA+
Sbjct: 157 KTALQEWALKRGQILPLYETLEQSGPSHAPLFVVRVSVGVESATAQ-AGAKRAAEQEAAR 215
Query: 144 VAYMRL 149
+ +L
Sbjct: 216 LLLGQL 221
>gi|351707553|gb|EHB10472.1| Double-stranded RNA-specific editase 1 [Heterocephalus glaber]
Length = 744
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPCFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|395752918|ref|XP_003779505.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 729
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 340
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + SG HA TF + V V G + G +SKKQAE AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 144 VAYMRLKEPNPSQG 157
A+ L E + + G
Sbjct: 227 AAWRMLTERSEADG 240
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 85 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
K +LQ+ AQK + +P Y T Q +G H F VE+GG++ GQG K KK AE AA
Sbjct: 327 KGLLQQYAQKNGFDIPEYTTIQETGTDHNKEFTVQVEIGGQI-CGQGKGKRKKDAEKQAA 385
Query: 143 KVAYMRLK 150
A +L+
Sbjct: 386 ANALEKLR 393
>gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus
norvegicus]
gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus
norvegicus]
Length = 687
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 111
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 112 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 288
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 713
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + L QSG HAPTFV +VEV G++F G G KK +A
Sbjct: 92 VLPKNALMQLNEIRP-GLQFKFVSQSGPVHAPTFVMSVEVNGQMFEGIGTTKKKAKLQAA 150
Query: 142 AKVAYMRLKEPNPSQ-----GPALVSPDIQAQA 169
K ++ PN S+ G +++ D + A
Sbjct: 151 EKALRSFVQFPNASEAHRAMGRHIITSDFTSDA 183
>gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_a [Homo sapiens]
Length = 729
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
Length = 678
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 65 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 122
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 123 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 155
>gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens]
Length = 699
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_b [Homo sapiens]
Length = 700
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|397506717|ref|XP_003823866.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 3
[Pan paniscus]
Length = 729
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 282 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 340
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 341 EGLQLHLPQVLADA 354
>gi|355745704|gb|EHH50329.1| hypothetical protein EGM_01140 [Macaca fascicularis]
Length = 1268
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 671 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 729
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 730 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 789
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 790 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 834
>gi|355558514|gb|EHH15294.1| hypothetical protein EGK_01361 [Macaca mulatta]
Length = 1269
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 672 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 730
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 731 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 790
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 791 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 835
>gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Macaca mulatta]
Length = 740
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 173
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 174 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 206
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 351
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQE A ++ P Y+ SG H+ F + V VG V + SKKQAEM+AA
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 145 AYMRLK 150
A+ RL+
Sbjct: 228 AWTRLE 233
>gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]
gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens]
gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens]
gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_c [Homo sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens]
gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens]
Length = 729
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 105 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 162
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 163 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 195
>gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]
gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens]
gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_e [Homo sapiens]
Length = 714
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|402862130|ref|XP_003895421.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3 [Papio
anubis]
Length = 714
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5
[Nomascus leucogenys]
Length = 674
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPILS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|418058719|ref|ZP_12696686.1| ribonuclease II [Methylobacterium extorquens DSM 13060]
gi|373567705|gb|EHP93667.1| ribonuclease II [Methylobacterium extorquens DSM 13060]
Length = 690
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 21/171 (12%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFK--CKVTIDGQTYES-------------- 49
+N+LQ Y + P P Y G PH F+ V + G+T S
Sbjct: 515 RNRLQEYCARAKHPAPTYEVSERGLPHDRVFEAVATVRVGGRTISSPSASARSKKEAEKA 574
Query: 50 -HQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSG 108
L E A + D + + L+ +K + +P + K G
Sbjct: 575 AAAAMLVLMGLEEPGAADPPSPAAAAPPAADVDDMARTRLETACRKRKWPMPRFEVKGDG 634
Query: 109 ESHAPTF--VSTVEVGGE--VFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155
SHAPTF V+ + GG V +SKK+AE AA+ ++ P S
Sbjct: 635 PSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAERVAARAMLDLVERPGAS 685
>gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|402862128|ref|XP_003895420.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Papio
anubis]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|402862126|ref|XP_003895419.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1 [Papio
anubis]
gi|355560227|gb|EHH16913.1| hypothetical protein EGK_13170 [Macaca mulatta]
Length = 741
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|354476794|ref|XP_003500608.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Cricetulus griseus]
Length = 711
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQIFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|354476792|ref|XP_003500607.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Cricetulus griseus]
gi|344241941|gb|EGV98044.1| Double-stranded RNA-specific editase 1 [Cricetulus griseus]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQIFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Macaca mulatta]
gi|402862132|ref|XP_003895422.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4 [Papio
anubis]
Length = 674
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|402856392|ref|XP_003892774.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Papio anubis]
Length = 1226
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo
sapiens]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|395752914|ref|XP_002830837.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Pongo
abelii]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|355747317|gb|EHH51814.1| hypothetical protein EGM_12105 [Macaca fascicularis]
Length = 741
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes]
gi|397506713|ref|XP_003823864.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Pan paniscus]
gi|410215246|gb|JAA04842.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410266404|gb|JAA21168.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410299376|gb|JAA28288.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410335023|gb|JAA36458.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
Length = 701
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes]
Length = 714
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|403271746|ref|XP_003927770.1| PREDICTED: double-stranded RNA-specific editase 1-like, partial
[Saimiri boliviensis boliviensis]
Length = 750
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 172 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 229
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 230 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 262
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 349 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 407
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 408 EGLQLHLPQVLADA 421
>gi|395752916|ref|XP_003779504.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 741
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1
[Oryctolagus cuniculus]
Length = 701
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+ F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQAFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 194
A+ A + PN S+ + + D++S Q++ L + +T+ R+
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETSDRV 186
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes]
Length = 674
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes]
gi|397506715|ref|XP_003823865.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Pan paniscus]
Length = 741
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|402856394|ref|XP_003892775.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Papio anubis]
Length = 1200
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 237 SAWREIR 243
>gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]
gi|2829669|sp|P78563.1|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens]
gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens]
gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens]
gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_d [Homo sapiens]
Length = 741
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase
[Rattus norvegicus]
gi|81910551|sp|Q63184.1|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated
protein kinase; AltName: Full=Eukaryotic translation
initiation factor 2-alpha kinase 2; Short=eIF-2A protein
kinase 2; AltName: Full=Interferon-inducible
RNA-dependent protein kinase; AltName: Full=Protein
kinase RNA-activated; Short=PKR; AltName:
Full=Tyrosine-protein kinase EIF2AK2
gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus]
Length = 513
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y+Q + + GPPH RF +V I+ + + + + +EA++ A
Sbjct: 8 FYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEG-RSKQEAKNNA 66
Query: 64 AKVALMSLSLDKFQQDDSVL-----------YKNVLQELAQKEAYALPVYNTKQSGESHA 112
AK+A+ L D + DS Y ++ AQKE LPV +S
Sbjct: 67 AKLAVEIL--DNENKVDSHTDASEQGLIEGNYIGLVNSFAQKEN--LPVNFELCDPDSQL 122
Query: 113 P-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
P F+ ++G + +KK+A+ AAK AY +L E +PS+
Sbjct: 123 PHRFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKLSEKSPSK 167
>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Nomascus leucogenys]
Length = 1279
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 682 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 740
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 741 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 800
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 801 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845
>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 1 [Macaca mulatta]
Length = 1199
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 628 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 686
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 687 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 746
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 747 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791
>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 2 [Macaca mulatta]
Length = 1225
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 628 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 686
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 687 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 746
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 747 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 791
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 234 SAWREIR 240
>gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus]
Length = 513
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y+Q + + GPPH RF +V I+ + + + + +EA++ A
Sbjct: 8 FYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEG-RSKQEAKNNA 66
Query: 64 AKVALMSLSLDKFQQDDSVL-----------YKNVLQELAQKEAYALPVYNTKQSGESHA 112
AK+A+ L D + DS Y ++ AQKE LPV +S
Sbjct: 67 AKLAVEIL--DNENKVDSHTDASEQGLIEGNYIGLVNSFAQKEN--LPVNFELCDPDSQL 122
Query: 113 P-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
P F+ ++G + +KK+A+ AAK AY +L E +PS+
Sbjct: 123 PHRFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKLSEKSPSK 167
>gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus]
Length = 376
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|407647467|ref|YP_006811226.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407310351|gb|AFU04252.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 237
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K LQEL + +P Y +G H F +T +GG+ + GQG +SKK+AE AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAY-GQGVGRSKKEAEQKAA 226
Query: 143 KVAYMRL 149
AY L
Sbjct: 227 GTAYQAL 233
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y GP H F I GQ Y + KEAE +AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAY-GQGVGRSKKEAEQKAA 226
Query: 65 KVALMSLS 72
A +L+
Sbjct: 227 GTAYQALT 234
>gi|390478279|ref|XP_002761540.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Callithrix jacchus]
Length = 782
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 116 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 174
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 175 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 206
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 293 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 351
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 352 EGLQLHLPQVLADA 365
>gi|455793316|gb|EMF45018.1| ribonuclease III [Leptospira interrogans serovar Lora str. TE 1992]
Length = 250
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 77 QQDDSVL-YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
++++SV YK LQE +QK LP+Y TK +SG HA TF V + + + SK
Sbjct: 169 EKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSK 228
Query: 135 KQAEMSAAKVAYMRLKE 151
K AE +AAK Y R+++
Sbjct: 229 KSAEQNAAKELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ-WEASGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
Length = 692
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 65 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 122
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 123 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 155
>gi|384939262|gb|AFI33236.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 580 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 638
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 639 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 698
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 699 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 743
>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Nomascus leucogenys]
Length = 1253
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 682 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 740
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 741 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 800
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 801 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 845
>gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens]
Length = 741
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
Length = 1278
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 660 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 718
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 719 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 778
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 779 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823
>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
Length = 1257
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 660 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 718
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 719 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 778
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 779 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 823
>gi|395729746|ref|XP_002810146.2| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
5 [Pongo abelii]
Length = 1226
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|383411201|gb|AFH28814.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 580 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 638
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 639 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 698
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 699 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 743
>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
Length = 694
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+L KN L +L + + L Q+G HAP FV +VEV G++F G G +KK+A+++A
Sbjct: 67 ILPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMSVEVNGQLFEGSGP-TKKKAKLNA 124
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 125 AEKALRSFVQFPNASEAHMAMGRTLSVHTDFTS 157
>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
sapiens]
Length = 1244
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 647 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 705
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 706 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 765
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 766 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 810
>gi|426331791|ref|XP_004026877.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Gorilla gorilla gorilla]
Length = 1226
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEASNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|386076104|ref|YP_005990293.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|417759749|ref|ZP_12407783.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|417766447|ref|ZP_12414399.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417772776|ref|ZP_12420664.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417776508|ref|ZP_12424345.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|417786880|ref|ZP_12434565.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|418666248|ref|ZP_13227679.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671381|ref|ZP_13232733.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|418681884|ref|ZP_13243106.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418691029|ref|ZP_13252136.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|418704885|ref|ZP_13265752.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710583|ref|ZP_13271353.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|418712860|ref|ZP_13273589.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|418725505|ref|ZP_13284123.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|418733745|ref|ZP_13290856.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|421086812|ref|ZP_15547660.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|421103899|ref|ZP_15564495.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115968|ref|ZP_15576361.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421119574|ref|ZP_15579894.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|421128301|ref|ZP_15588516.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421135834|ref|ZP_15595954.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|59798574|sp|Q75FW5.1|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|59798588|sp|Q8EXX3.1|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|353459766|gb|AER04310.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. IPAV]
gi|400326401|gb|EJO78668.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400351274|gb|EJP03514.1| ribonuclease III [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400360065|gb|EJP16046.1| ribonuclease III [Leptospira interrogans str. FPW2026]
gi|409944497|gb|EKN90080.1| ribonuclease III [Leptospira interrogans str. 2002000624]
gi|409945453|gb|EKN95469.1| ribonuclease III [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409949732|gb|EKO04265.1| ribonuclease III [Leptospira interrogans str. C10069]
gi|409961142|gb|EKO24889.1| ribonuclease III [Leptospira interrogans str. UI 12621]
gi|410012464|gb|EKO70562.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020139|gb|EKO86944.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410347725|gb|EKO98598.1| ribonuclease III [Leptospira interrogans str. Brem 329]
gi|410366380|gb|EKP21772.1| ribonuclease III [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430841|gb|EKP75204.1| ribonuclease III [Leptospira santarosai str. HAI1594]
gi|410434026|gb|EKP83167.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410573717|gb|EKQ36762.1| ribonuclease III [Leptospira interrogans str. 2002000621]
gi|410581642|gb|EKQ49451.1| ribonuclease III [Leptospira interrogans str. 2002000623]
gi|410758195|gb|EKR19794.1| ribonuclease III [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410765498|gb|EKR36198.1| ribonuclease III [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769172|gb|EKR44415.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|410772926|gb|EKR52958.1| ribonuclease III [Leptospira interrogans str. UI 12758]
gi|410790629|gb|EKR84321.1| ribonuclease III [Leptospira interrogans str. UI 08452]
gi|455669787|gb|EMF34845.1| ribonuclease III [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|456825599|gb|EMF73977.1| ribonuclease III [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966676|gb|EMG08210.1| ribonuclease III [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
gi|456983734|gb|EMG19964.1| ribonuclease III [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 247
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 77 QQDDSVL-YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
++++SV YK LQE +QK LP+Y TK +SG HA TF V + + + SK
Sbjct: 169 EKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSK 228
Query: 135 KQAEMSAAKVAYMRLKE 151
K AE +AAK Y R+++
Sbjct: 229 KSAEQNAAKELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ-WEASGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
Length = 970
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|149639721|ref|XP_001515387.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Ornithorhynchus
anatinus]
Length = 397
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 9 LQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKV- 66
L Y K +P++ CE+ EG H F KVTI T + + + A +
Sbjct: 123 LHEYGVKTGF-VPVFECEKAEGQIHQPNFTFKVTIGKLTCTGEGPKKKVAKHKAAEAAIN 181
Query: 67 -----ALMSLSLDKFQQDDSVLYK-------NVLQELAQKEAYALPVYN-TKQSGESHAP 113
+ +SLS+ DS N LQELA + ++LP Y +K+SG +H
Sbjct: 182 QLKANSGISLSVSGPSVPDSCKQPQKPKSPINSLQELAMRCGWSLPEYTLSKESGPAHKK 241
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSP 163
F+ ++ V +G GA SKKQA+ SAA+ +L Q +LV P
Sbjct: 242 EFIMNCKLETYVETGTGA-SKKQAKESAAEKLLAKLHTVTAGQKKSLVKP 290
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A+ +K
Sbjct: 230 SAWRSIK 236
>gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2
[Oryctolagus cuniculus]
Length = 715
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+ F G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQAFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRL 194
A+ A + PN S+ + + D++S Q++ L + +T+ R+
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFETSDRV 186
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
Length = 1226
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|410222682|gb|JAA08560.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410263176|gb|JAA19554.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410334879|gb|JAA36386.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|395845300|ref|XP_003795379.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Otolemur garnettii]
Length = 1145
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 37/162 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ 78
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L +
Sbjct: 577 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAIKALHGEATSS 635
Query: 79 DDS--------------------------VLYKNV-----LQELAQKEAYALPVYNTKQS 107
DD V Y N L E A+ +A QS
Sbjct: 636 DDQPGDTNTESCENLESVVPGKVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQS 695
Query: 108 GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
G H P FV +VGG F A SKKQ + AA A L
Sbjct: 696 GPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|418699115|ref|ZP_13260082.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410761975|gb|EKR28146.1| ribonuclease III [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 247
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 77 QQDDSVL-YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
++++SV YK LQE +QK LP+Y TK +SG HA TF V + + + SK
Sbjct: 169 EKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQWEASGSGVSK 228
Query: 135 KQAEMSAAKVAYMRLKE 151
K AE +AAK Y R+++
Sbjct: 229 KSAEQNAAKELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ-WEASGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|390478277|ref|XP_003735462.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Callithrix jacchus]
Length = 701
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY-----MRL-----KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A +RL ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLRLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length = 240
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K LQEL + +P Y +G H F +T +GG + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 143 KVAYMRL 149
AY L
Sbjct: 230 GAAYQAL 236
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y GP H F I G+ Y + KEAE +AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAY-GQGVGRSKKEAEQKAA 229
Query: 65 KVALMSLS 72
A +L+
Sbjct: 230 GAAYQALT 237
>gi|410299060|gb|JAA28130.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|426331793|ref|XP_004026878.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Gorilla gorilla gorilla]
Length = 1200
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEASNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|380792411|gb|AFE68081.1| double-stranded RNA-specific editase 1 isoform 2, partial [Macaca
mulatta]
Length = 475
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 144 VAYMRLKE 151
A+ L E
Sbjct: 228 SAWRELTE 235
>gi|313104303|sp|P55265.4|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=136 kDa double-stranded
RNA-binding protein; Short=p136; AltName:
Full=Interferon-inducible protein 4; Short=IFI-4;
AltName: Full=K88DSRBP
Length = 1226
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 1221
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 624 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 682
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 683 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 742
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 743 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 787
>gi|395845296|ref|XP_003795377.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Otolemur garnettii]
Length = 1171
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 37/162 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ 78
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L +
Sbjct: 577 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAIKALHGEATSS 635
Query: 79 DDS--------------------------VLYKNV-----LQELAQKEAYALPVYNTKQS 107
DD V Y N L E A+ +A QS
Sbjct: 636 DDQPGDTNTESCENLESVVPGKVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQS 695
Query: 108 GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
G H P FV +VGG F A SKKQ + AA A L
Sbjct: 696 GPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
sapiens]
gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
Length = 1226
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
Length = 1226
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|444513444|gb|ELV10323.1| Double-stranded RNA-specific editase 1 [Tupaia chinensis]
Length = 676
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 53 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 110
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 111 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 143
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 230 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATVFNLHLDQTPSRQPIPS 288
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 289 EGLQLHLPQVLADA 302
>gi|397492942|ref|XP_003817378.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase [Pan paniscus]
Length = 1194
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 623 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 681
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 682 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 741
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 742 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 786
>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
Length = 1200
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK ++QEL Q P Y K+SG H +FV+ V++ EV KSKK+AE +AA
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAA 221
Query: 143 KVAYMRL 149
A+ +L
Sbjct: 222 HFAFQKL 228
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 62 EAAKVALMSLSLDKFQQDDSVL---YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVS 117
EAA+ L + Q++ + + YK +LQE QK Y T + G +H FV+
Sbjct: 135 EAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQKVGLGPLTYRITDERGPAHHREFVA 194
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
V +GG+ + +SKK+AE AA+ A M+L
Sbjct: 195 QVWIGGQAYGEGSGRSKKEAEQHAAREALMKL 226
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNL-PLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ + QK L PL + GP H F +V I GQ Y + KEAE A
Sbjct: 160 YKTMLQEHVQKVGLGPLTYRITDERGPAHHREFVAQVWIGGQAYGEGS-GRSKKEAEQHA 218
Query: 64 AKVALMSLS 72
A+ ALM L+
Sbjct: 219 AREALMKLT 227
>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 85 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSA 141
K +LQE Q ALP Y+ + GE+HA TFV T E+ G V G+G S++ AE A
Sbjct: 154 KTLLQEHLQSRKLALPQYHVAEIKGEAHAQTFVVTCEIAQLGLVSQGEGT-SRRIAEQIA 212
Query: 142 AKVAYMRLKE 151
A+ AY ++KE
Sbjct: 213 AERAYQQIKE 222
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ Y + LP Y ER GP HA RF+ +VT+ G+T E T +EAE AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEG--LAGTKREAEQNAA 213
Query: 65 K 65
+
Sbjct: 214 R 214
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE A LP Y +++G SHAP F V V G G A +K++AE +AA+
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEGL-AGTKREAEQNAAR 214
>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens]
gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
Length = 1200
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|379710093|ref|YP_005265298.1| RNase III [Nocardia cyriacigeorgica GUH-2]
gi|374847592|emb|CCF64662.1| RNase III [Nocardia cyriacigeorgica GUH-2]
Length = 240
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K LQEL + +P Y +G H F +T +GG+ + GQG +SKK+AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAY-GQGVGRSKKEAEQKAA 229
Query: 143 KVAYMRL 149
AY L
Sbjct: 230 GAAYQAL 236
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y GP H F I GQ Y + KEAE +AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAY-GQGVGRSKKEAEQKAA 229
Query: 65 KVALMSLS 72
A +L+
Sbjct: 230 GAAYQALT 237
>gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus]
gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus]
gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus]
Length = 701
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 78 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 135
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 136 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 168
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 255 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 313
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 314 EGLQLHLPQVLADA 327
>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
norvegicus]
Length = 1175
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 579 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALQEEAANS 637
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 638 ADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 697
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 698 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB]
gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB]
Length = 227
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE+ Q E + ++ GE H F+ V++G ++ S KSKK AE AAK
Sbjct: 159 YKTKLQEMIQSENKTVRYILLEELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAK 218
Query: 144 VAYMRLKEP 152
+A ++L++
Sbjct: 219 IALLKLEKK 227
>gi|359420982|ref|ZP_09212913.1| ribonuclease III [Gordonia araii NBRC 100433]
gi|358243255|dbj|GAB10982.1| ribonuclease III [Gordonia araii NBRC 100433]
Length = 243
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 44 GQTYESHQFFPTLKEAEHEAAKVALMSLSL-DKFQQDDSVLYKNVLQELAQKEAYALPVY 102
G Y H F PT EA + L S ++ D + + +K LQEL+ + P Y
Sbjct: 129 GAVYLEHGFEPT------EAVILGLFSDAVADAGRLGAGLDWKTSLQELSAARSLGPPAY 182
Query: 103 NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+G H F +T VGGE +SKK+AE AA+ A+ L
Sbjct: 183 LISSTGPDHDKEFTATAVVGGEELGTGIGRSKKEAEQVAAQEAWRAL 229
>gi|380302783|ref|ZP_09852476.1| RNAse III [Brachybacterium squillarum M-6-3]
Length = 250
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K+ LQE+A E+ A P Y +SG H TF +TV V G V + SKK AE++AA+
Sbjct: 174 FKSRLQEIA-AESGATPAYRLSESGLEHDKTFTATVTVAGVVTASGEGHSKKDAELAAAQ 232
Query: 144 VA 145
A
Sbjct: 233 TA 234
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 141
+Y N LQEL QK +Y LP Y T G H P F STV V F S + A + K ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 142 AKVAYMRL 149
A VA+
Sbjct: 61 AMVAFHHF 68
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+Y N+LQ QK + PLP Y EGP H F VT+ ++ S + TLK ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 64 AKVAL 68
A VA
Sbjct: 61 AMVAF 65
>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Callithrix jacchus]
Length = 1200
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|403293613|ref|XP_003937807.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Saimiri boliviensis boliviensis]
Length = 1182
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 585 SCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 643
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 644 MLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 703
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 704 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 748
>gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus]
gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus]
Length = 680
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 57 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 114
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 115 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 147
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 234 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 292
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 293 EGLQLHLPQVLADA 306
>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Callithrix jacchus]
Length = 1226
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 629 SCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 687
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 688 MLSDDQPEGTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 747
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 748 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus]
gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus]
Length = 524
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 78 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 135
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 136 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 168
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 255 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 313
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 314 EGLQLHLPQVLADA 327
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 144 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSS 175
A+ ++ + A + + A D +S+S
Sbjct: 245 SAWRSIRAAADERAKA-TADAVDADPDEASAS 275
>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
Length = 699
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP F+ TVEV G+ F G G +KK+A+++A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFIMTVEVNGQGFEGSGP-TKKKAKLNA 134
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 135 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V E F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFVMSVTVDNETFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 311
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHA 61
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 190
A+ A + PN S+ + + D++S Q++ L + +T
Sbjct: 62 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 109
>gi|432912051|ref|XP_004078843.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 776
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPD 164
+SG HAP F VEV G F G G+ +KKQA+M AA++A ++ PN SQ A++
Sbjct: 175 KSGPLHAPVFSVGVEVNGFHFEGFGS-TKKQAKMRAAELALQSFIQFPNASQAHAVMGNF 233
Query: 165 IQAQADYSSSSL 176
A D+++ L
Sbjct: 234 TNANVDFAADKL 245
>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
gi|1706533|sp|P55266.1|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA
gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
Length = 1175
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 579 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALQEEAANS 637
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 638 ADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 697
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 698 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 738
>gi|421881985|ref|ZP_16313281.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315857|emb|CCF81277.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 223
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 70 SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSG 128
+LSL + D YK+ LQEL Q +P Y K +SG HA F + + +++
Sbjct: 143 NLSLQELFMD----YKSALQELTQARFKVVPTYMLKNESGPDHAKQFEMQIFILNKLYGT 198
Query: 129 QGAKSKKQAEMSAAKVAYMRLKE 151
A SKKQAE A+VAY +LK+
Sbjct: 199 CKASSKKQAEQLCAQVAYEQLKQ 221
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 144 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSS 175
A+ ++ + A + + A D +S+S
Sbjct: 241 SAWRSIRAAADERAKA-TADAVDADPDEASAS 271
>gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus]
gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus]
Length = 503
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 57 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPVFVMAVEVNGQVFEGSGP-TKKKAKLHA 114
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 115 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 147
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 234 ESGESHAKNFVMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 292
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 293 EGLQLHLPQVLADA 306
>gi|449507466|ref|XP_002192699.2| PREDICTED: double-stranded RNA-specific editase 1 [Taeniopygia
guttata]
Length = 699
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+VF G G +KK+A++ A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPMFVMAVEVNGQVFEGSGP-TKKKAKLHA 133
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 134 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA F+ V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFIMAVAVDGQTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSRQPIPS 311
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
Length = 245
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 230 SAWRSIR 236
>gi|386854106|ref|YP_006203391.1| Ribonuclease III [Borrelia garinii BgVir]
gi|408671311|ref|YP_006871382.1| ribonuclease III [Borrelia garinii NMJW1]
gi|365194140|gb|AEW69038.1| Rnc [Borrelia garinii BgVir]
gi|407241133|gb|AFT84016.1| ribonuclease III [Borrelia garinii NMJW1]
Length = 245
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 234 SAWRGIR 240
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 234 SAWRSIR 240
>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
gi|81609804|sp|Q660G7.1|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
Length = 245
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Length = 242
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K +LQE QK+ LPVY +SGE+H + V +V KSKK+AE+ AAK
Sbjct: 165 KGLLQEFLQKKGMELPVYRIVMESGEAHNKWYEVEVLWKNQVLGKGSGKSKKEAELRAAK 224
Query: 144 VAYMRLKEPNP 154
A+ +L P
Sbjct: 225 EAFEKLISQTP 235
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|380786015|gb|AFE64883.1| double-stranded RNA-specific adenosine deaminase isoform d [Macaca
mulatta]
Length = 931
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 393 MTSDDQPEGMISESLDNLESVMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 452
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
troglodytes]
Length = 931
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 393 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 452
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|386856052|ref|YP_006260229.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
gi|379999581|gb|AFD24771.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
Length = 149
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K L + TQ L P++ E EGPPH F+ +V++ G+ + + K+AE AA+
Sbjct: 4 KGDLIARTQTLGLGTPVFEAEAEGPPHDRTFRAQVSVGGEVLGQGEGR-SKKDAERAAAE 62
Query: 66 VALMSLSLDKFQQDDS 81
VAL L+ + DDS
Sbjct: 63 VALRVLN-GRGDTDDS 77
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 100 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRL 149
PV+ + G H TF + V VGGEV GQG +SKK AE +AA+VA L
Sbjct: 19 PVFEAEAEGPPHDRTFRAQVSVGGEVL-GQGEGRSKKDAERAAAEVALRVL 68
>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
Length = 246
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 167 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 226
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 227 KEAEMRAAEVALKAMEDIN 245
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 175 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 233
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 234 AEVALKAM 241
>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
Length = 931
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 393 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 452
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 931
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 393 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 452
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 234 SAWRGIR 240
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 234 SAWRSIR 240
>gi|296490897|tpg|DAA33010.1| TPA: adenosine deaminase, RNA-specific, B1 [Bos taurus]
Length = 748
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G +KK+A++ AA
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGP-TKKKAKLHAA 135
Query: 143 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+ A + PN S+ + + AD++S Q++ L + +T R
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 185
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 144 VAYMRL 149
A+ +
Sbjct: 198 SAWREI 203
>gi|348579304|ref|XP_003475420.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Cavia porcellus]
Length = 1137
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 65/163 (39%), Gaps = 38/163 (23%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L
Sbjct: 565 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAMKALHEEATNA 623
Query: 72 -----------SLDKFQQD---------DSVLYKNV-----LQELAQKEAYALPVYNTKQ 106
SLD + + V Y N L E A+ +A Q
Sbjct: 624 ADNQSGDTNSESLDTLESGVPNNIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQ 683
Query: 107 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
SG H P FV +VGG F A SKKQ + AA A L
Sbjct: 684 SGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 726
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV 101
+D H+ F L E K A + LD +K LQEL E +P
Sbjct: 151 LDAAAELVHRLFDPLIE------KSAGLGAGLD---------WKTSLQELTATEGLGVPE 195
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
Y ++G H TF + VGG + +SKK+AE AA+ A+
Sbjct: 196 YMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAW 240
>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
Length = 245
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|410679488|ref|YP_006931890.1| ribonuclease III [Borrelia afzelii HLJ01]
gi|408536876|gb|AFU75007.1| ribonuclease III [Borrelia afzelii HLJ01]
Length = 245
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPNYKLEKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y E+E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLEKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 230 SAWRSIR 236
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRL 149
A+ +
Sbjct: 234 SAWREI 239
>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
gi|384207191|ref|YP_005592913.1| ribonuclease III [Borrelia afzelii PKo]
gi|123341290|sp|Q0SMF0.1|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
gi|342857075|gb|AEL69923.1| ribonuclease III [Borrelia afzelii PKo]
Length = 245
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|358410640|ref|XP_002702377.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
gi|359062794|ref|XP_002685172.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
Length = 701
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G +KK+A++ AA
Sbjct: 78 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGP-TKKKAKLHAA 135
Query: 143 KVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
+ A + PN S+ + + AD++S Q++ L + +T R
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 185
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 254 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
Length = 245
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG + S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYIQKKYKISPSYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA +++ N
Sbjct: 226 KEAEMRAAEVALKAMEDIN 244
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYIQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GEKFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|426219531|ref|XP_004003975.1| PREDICTED: double-stranded RNA-specific editase 1 [Ovis aries]
Length = 1316
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 687 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGPTKKKAKLHAAE 745
Query: 143 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
K ++ PN S+ + + AD++S Q++ L + +T R
Sbjct: 746 KALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 794
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 869 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 927
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 928 EGLQLHLPQVLADA 941
>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
Length = 905
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNS 392
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 393 MASDNQPEGMISESLDNLESMMPNKVRKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 452
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRL 149
A+ +
Sbjct: 234 SAWREI 239
>gi|452750894|ref|ZP_21950641.1| Ribonuclease III [alpha proteobacterium JLT2015]
gi|451962088|gb|EMD84497.1| Ribonuclease III [alpha proteobacterium JLT2015]
Length = 230
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQT 46
KN LQ + Q++ LP+P Y R+GPPHA RF +V + G+T
Sbjct: 162 KNALQEWAQQRQLPIPQYQIVGRDGPPHAPRFTVEVHLPGRT 203
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAY 146
A+
Sbjct: 234 SAW 236
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAYMRL 149
A+ +
Sbjct: 234 SAWREI 239
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 230 SAWRAIR 236
>gi|440903429|gb|ELR54089.1| Double-stranded RNA-specific editase 1, partial [Bos grunniens
mutus]
Length = 745
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 123 LPKNALMQLNEIKP-GLQYTLLSQTGPVHAPLFLMSVEVNGQVFEGSGPTKKKAKLHAAE 181
Query: 143 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
K ++ PN S+ + + AD++S Q++ L + +T R
Sbjct: 182 KALRSFVQFPNASEAHLAMGRSLSTNADFTSD--QADFPDALFNGFETPDR 230
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV +V V G+ F G G ++KK A+ AA+ A + ++P PS
Sbjct: 299 ESGESHAKNFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPIPS 357
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 358 EGLQLHLPQVLADA 371
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 144 VAY 146
A+
Sbjct: 198 SAW 200
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 144 VAYMRL 149
A+ L
Sbjct: 228 SAWRTL 233
>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 239
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 79 DDSVL--YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
DDS+ YK LQE K+ L TK+ G H+ TF V++G ++ + K+KK
Sbjct: 161 DDSIFNDYKTKLQEYHNAKDKKILKYELTKEEGPEHSKTFTMAVKLGNKILAYGVGKNKK 220
Query: 136 QAEMSAAKVAYMRLKEPN 153
QAE AAK A+ ++ + N
Sbjct: 221 QAEQMAAKAAFEKINKKN 238
>gi|398338382|ref|ZP_10523085.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
Length = 285
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 143 KVAYMRLKE 151
K Y R+++
Sbjct: 237 KELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQ-WEATGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|418720931|ref|ZP_13280119.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|418735079|ref|ZP_13291491.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|421095924|ref|ZP_15556632.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|122280610|sp|Q04R64.1|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|410361339|gb|EKP12384.1| ribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410742410|gb|EKQ91158.1| ribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|410749335|gb|EKR02227.1| ribonuclease III [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456886971|gb|EMF98072.1| ribonuclease III [Leptospira borgpetersenii str. 200701203]
Length = 247
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 142 AKVAYMRLK 150
AK Y+R++
Sbjct: 236 AKELYIRIR 244
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I Q +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 241 SAWRSIR 247
>gi|410987074|ref|XP_003999833.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Felis
catus]
Length = 1083
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 66/165 (40%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 538 SCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASA-PSKKAAKQMAAEEAMKALHGEATSS 596
Query: 72 ----------SLDKFQQDDS------------VLYKNV-----LQELAQKEAYALPVYNT 104
S++ F+ +S V Y N L E A+ +A
Sbjct: 597 APSDTQPGGASVESFENLESGMPSKVRRVGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 656
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 657 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 701
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 235
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 236 SAWRAIR 242
>gi|72009988|ref|XP_781832.1| PREDICTED: double-stranded RNA-specific editase 1-like
[Strongylocentrotus purpuratus]
Length = 696
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAPTFV +VEV ++F G G +SKK A M AA
Sbjct: 82 LPKNALMQLNEIKP-GLVFKTQSQTGPVHAPTFVVSVEVNDQLFEGTG-RSKKTARMHAA 139
Query: 143 KVAYMR-LKEPNPSQGPALVSPDIQAQADYSS 173
++A ++ PN S + Q AD++S
Sbjct: 140 ELALKSFIQFPNASDAYQALG-RFQFNADFTS 170
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 87 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
+L EL + Y + ++SG+SH+ F ++ + G+ F G G ++KK A+ AA+ A
Sbjct: 238 ILNELKPGQKYEM----QEESGQSHSKNFTMSLTIDGKNFQGTG-RNKKLAKQRAAQAAL 292
Query: 147 MRLKEPNPSQGPALVSPDIQ 166
+ L + NP +++PD+Q
Sbjct: 293 IALFDMNP-----VLAPDLQ 307
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 231 SAWRAIR 237
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 231 SAWRAIR 237
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E+ +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAY 146
A+
Sbjct: 234 SAW 236
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 226
Query: 144 VAY 146
A+
Sbjct: 227 SAW 229
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 144 VAY 146
A+
Sbjct: 241 SAW 243
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 238
Query: 144 VAYMRL 149
A+ +
Sbjct: 239 SAWREI 244
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length = 249
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 33 ASRFKCKVTID------GQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKN 86
R K + D G Y H P+ +E H L S L D +K
Sbjct: 123 GGRSKASILADATEALLGAVYLQHGLEPS-RELVHRLFADLLHSAPLLGAGLD----WKT 177
Query: 87 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
LQEL + +P Y + G H F +T VGG ++KK+AE AA++A+
Sbjct: 178 SLQELTAAGGHGVPEYRIDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAELAW 237
Query: 147 MRL 149
L
Sbjct: 238 RTL 240
>gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205]
Length = 236
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHAS--RFKCKVTIDGQTYESHQFFPTLKEAE 60
H +K+ LQ ++Q + LP Y CE HA RF C+V++ G+T + + ++AE
Sbjct: 161 HNWKSALQEWSQGQKRGLPDYRCEEVSQVHADPRRFHCQVSL-GKTTLGEGWGRSRRQAE 219
Query: 61 HEAAKVALMSL 71
EAA+V+L L
Sbjct: 220 QEAARVSLEKL 230
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAP--TFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
+K+ LQE +Q + LP Y ++ + HA F V +G +S++QAE A
Sbjct: 163 WKSALQEWSQGQKRGLPDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEA 222
Query: 142 AKVAYMRLKEPNPSQG 157
A+V+ +L+ P+QG
Sbjct: 223 ARVSLEKLR---PAQG 235
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 235 SAWRAIR 241
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAY 146
A+
Sbjct: 230 SAW 232
>gi|354478898|ref|XP_003501651.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Cricetulus griseus]
Length = 1148
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L
Sbjct: 578 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAMKALQEEAANS 636
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 637 ADDQSGGVNTESLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 696
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 697 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
>gi|354478896|ref|XP_003501650.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Cricetulus griseus]
gi|344242007|gb|EGV98110.1| Double-stranded RNA-specific adenosine deaminase [Cricetulus
griseus]
Length = 1174
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L
Sbjct: 578 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAMKALQEEAANS 636
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 637 ADDQSGGVNTESLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 696
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 697 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 737
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQEL+++ P Y +G H P + V VGG + +SKK AE AA+
Sbjct: 202 KTALQELSRRLGLGEPTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAAR 261
Query: 144 VAYMRLKEPNPSQGPALVSPDIQAQA 169
+A L+EP GP +P+ + A
Sbjct: 262 MALAGLEEP---AGPGAAAPEREGTA 284
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 227
Query: 144 VAY 146
A+
Sbjct: 228 SAW 230
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 242
Query: 144 VAY 146
A+
Sbjct: 243 SAW 245
>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
Length = 245
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA ++ N
Sbjct: 226 KEAEMRAAEVALKAMENIN 244
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GENFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|365992396|ref|NP_212839.2| ribonuclease III [Borrelia burgdorferi B31]
gi|387826338|ref|YP_005805791.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|387827603|ref|YP_005806885.1| ribonuclease III [Borrelia burgdorferi N40]
gi|384872624|sp|O51648.2|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
gi|356609400|gb|AAC67040.2| ribonuclease III [Borrelia burgdorferi B31]
Length = 245
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA ++ N
Sbjct: 226 KEAEMRAAEVALKAMENIN 244
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GENFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|348556433|ref|XP_003464026.1| PREDICTED: double-stranded RNA-specific editase 1, partial [Cavia
porcellus]
Length = 602
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP F+ +VEV G+VF G G KK +A
Sbjct: 77 VLPKNALMQLNEIKP-GLQYTLLSQTGPVHAPRFLMSVEVNGQVFEGSGPTKKKAKLHAA 135
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 136 EKALRSFVQFPNASEAHLAMGRTLSMNTDFTS 167
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA +FV +V V G+ F G G ++KK A+ AA+ A + ++P S
Sbjct: 254 ESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQSALATIFNLHLDQTPSRQPVLS 312
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 313 EGLQLHLPQVLADA 326
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 144 VAY 146
A+
Sbjct: 234 SAW 236
>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
gi|123494405|sp|Q2GIW0.1|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
Length = 236
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ +A+P Y +SG HAP F V V G+ G K KK AE++AAK
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCK-KKYAEIAAAK 224
Query: 144 VAYMRLKEPN 153
+ ++ + N
Sbjct: 225 LMLEKVTKQN 234
>gi|345327639|ref|XP_001507858.2| PREDICTED: double-stranded RNA-specific editase 1-like
[Ornithorhynchus anatinus]
Length = 968
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+ F G G KK +A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLLSQTGPVHAPMFVMAVEVNGQAFEGTGPTKKKAKLHAA 134
Query: 142 AKVAYMRLKEPNPSQGPALVSPDIQAQADYSS 173
K ++ PN S+ + + D++S
Sbjct: 135 EKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G+ F G G ++KK A+ AA+ A L ++P PS
Sbjct: 253 ESGESHAKNFVMAVAVDGQNFEGSG-RNKKLAKARAAQSALASLFNMHLDQTPSRQPIPS 311
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 312 EGLQLHLPQVLADA 325
>gi|418693972|ref|ZP_13255019.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|421108602|ref|ZP_15569138.1| ribonuclease III [Leptospira kirschneri str. H2]
gi|409958205|gb|EKO17099.1| ribonuclease III [Leptospira kirschneri str. H1]
gi|410006205|gb|EKO59965.1| ribonuclease III [Leptospira kirschneri str. H2]
Length = 249
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK LP+Y TK +SG HA TF V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQWEATGSGVSKKSAEQNAA 236
Query: 143 KVAYMRLKE 151
K Y R+++
Sbjct: 237 KELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPLYRTKSESGPDHAKTFQVVVRIRDQ-WEATGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K L + + +L +P++ R GP H +F C VTI QT+ Q PT K AE EA+K
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQ-QPTKKLAEKEASK 141
Query: 66 VALMSL 71
A+ L
Sbjct: 142 QAVEGL 147
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K L L + + +PV+ T ++G H P F TV +G + F G +KK AE A+K
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTKKLAEKEASKQ 142
Query: 145 AYMRLKE 151
A L E
Sbjct: 143 AVEGLFE 149
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K +LQE QK+ LP+Y +SGE+H + V +V KSKK+AE+ AAK
Sbjct: 165 KGLLQEFLQKKGTELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAK 224
Query: 144 VAYMRL 149
A+ +L
Sbjct: 225 EAFEKL 230
>gi|383456226|ref|YP_005370215.1| ribonuclease III [Corallococcus coralloides DSM 2259]
gi|380734172|gb|AFE10174.1| ribonuclease III [Corallococcus coralloides DSM 2259]
Length = 260
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQELA ++ P Y ++G HA F V +G V++ ++KK+AE +AA
Sbjct: 167 YKTLLQELAHEKLKLSPRYRVVAETGPEHAKVFEVEVCIGESVYARATGRNKKEAEQAAA 226
Query: 143 KVAYMRLKEPNPSQGPALVSPDIQA 167
+ RLK ++ + SPD+ A
Sbjct: 227 RTTLERLK----AEVAVVASPDVVA 247
>gi|406945190|gb|EKD76766.1| hypothetical protein ACD_42C00622G0001, partial [uncultured
bacterium]
Length = 130
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K LQ + Q + +PLP+Y C G H F ++G +E+ + ++AE AAK
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 66 VALMSLS 72
+ L ++
Sbjct: 123 LFLAKIN 129
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAK 143
K LQE Q LP+Y +G++H F T V G F G + S+++AE AAK
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 144 VAYMRL 149
+ ++
Sbjct: 123 LFLAKI 128
>gi|348574347|ref|XP_003472952.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Cavia porcellus]
Length = 481
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y +L Y QK + + GPPH S F +V I+ +T+ + T ++A++ A
Sbjct: 9 FYIEELNKYQQKHGVKVSYEKLSVTGPPHNSVFTFRVIIEDRTFPQGE-GRTKQDAKNSA 67
Query: 64 AKVALMSLS-------------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGES 110
AK+A L+ D ++ + Y +L +QK Y L + GE
Sbjct: 68 AKIAFTILNQEKKESSSSSLMPRDTSEESANGNYVGLLNRFSQK--YRLLINYEYDLGEE 125
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPAL 160
F ++G +V+ A +KK A+ AAK+A+ ++ + + P +
Sbjct: 126 GPQRFQFKCKIGQKVYGFGVASTKKDAKQLAAKLAFDKISKEISMKTPQM 175
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQAAE 197
Query: 144 VAY 146
A+
Sbjct: 198 SAW 200
>gi|381397762|ref|ZP_09923171.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
gi|380774890|gb|EIC08185.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
Length = 230
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQELA + A P Y G H F +TV VG +G G+ SKKQAEM+AA
Sbjct: 163 KTSLQELAARLTLAPPAYVISAEGPDHNRVFTATVSVGDATATGVGS-SKKQAEMAAALT 221
Query: 145 AYMRLKE 151
+ L +
Sbjct: 222 LWRTLSD 228
>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
Length = 229
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ + Q +NLPLP Y EGP HA F+ I+GQ + + AE +AA
Sbjct: 160 KTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAA 219
Query: 65 KVALMSLSLD 74
VA+ L D
Sbjct: 220 SVAIGELGND 229
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y ++G H TF + VGG + +SKK+AE AA+
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 144 VAYMRLK 150
A+ ++
Sbjct: 230 SAWRAIR 236
>gi|395519855|ref|XP_003764057.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A [Sarcophilus harrisii]
Length = 288
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 9 LQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y K N +P+Y ER +G + F KVT+ T + K A+H+AA+ A
Sbjct: 14 LHEYGMKTN-NVPVYEFERADGHANTPSFTFKVTVGDITCSGEG--SSKKMAKHKAAEAA 70
Query: 68 LMSLSL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYNTKQ-SGESH 111
+ L D D S KN LQELA + + LP Y Q G +H
Sbjct: 71 IGHLKANASLCFAVPDPMAPDPSKQPKNQANPIGSLQELAIQHGWRLPEYTLSQEGGPAH 130
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVS 162
F + + + +G+GA SKKQA+ +AA+ + +E +P +L +
Sbjct: 131 KKEFTTICRLESFIETGKGA-SKKQAKRNAAEKFLAKFREFSPDNNVSLAN 180
>gi|343128004|ref|YP_004777935.1| ribonuclease III [Borrelia bissettii DN127]
gi|342222692|gb|AEL18870.1| ribonuclease III [Borrelia bissettii DN127]
Length = 245
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + VG S KSK
Sbjct: 166 FNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSK 225
Query: 135 KQAEMSAAKVAYMRLKEPN 153
K+AEM AA+VA ++ N
Sbjct: 226 KEAEMRAAEVALKAMENIN 244
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y QKK P Y ++E GP H F ++ + G+ + S+ + KEAE A
Sbjct: 174 YKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV-GENFISNGKGKSKKEAEMRA 232
Query: 64 AKVALMSL 71
A+VAL ++
Sbjct: 233 AEVALKAM 240
>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
Length = 734
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F V+V G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQFRMVSQTGPVHAPIFAVAVDVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ---GPALVSPDIQA-QADYSSSSLQ 177
AA++A + PN Q P ++PD + QAD+ + Q
Sbjct: 181 AAELALRSFVQLPNAGQAPPAPGGMAPDFTSDQADFPDALFQ 222
>gi|405953593|gb|EKC21226.1| Double-stranded RNA-specific editase 1 [Crassostrea gigas]
Length = 1518
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 46/146 (31%)
Query: 36 FKCKVTIDGQTYESHQFFPTLKE---AEHEAAKVALMSLSLDKFQ----------QDDSV 82
+ C VT+DG+ QF T K A+ EA K AL L KF DD+
Sbjct: 1373 YSCHVTVDGE-----QFTGTGKSQKVAKQEACKYAL----LKKFNILYVPGYENISDDTN 1423
Query: 83 LYKNVLQELAQKE-------------AYALPVYN-TK---------QSGESHAPTFVSTV 119
++ V ++ K+ AL V N TK Q+G HAPTFV +V
Sbjct: 1424 IFNAVKRKAPPKQNGPSPKKQKSSVPKNALMVLNETKPGLSYNVMSQTGPVHAPTFVISV 1483
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVA 145
E+ G+ F+G G SKK A ++ A+ A
Sbjct: 1484 EIEGQTFTGTGT-SKKSARLATAQNA 1508
>gi|350270970|ref|YP_004882278.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
gi|348595812|dbj|BAK99772.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
Length = 235
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K LQEL Q++A + +Y + G H TF++ V + G V G SKK+AE SAA
Sbjct: 166 FKTELQELVQRKANQVLLYRMAGEKGPDHDKTFLAEVLLNGMVIGAGGGHSKKEAEQSAA 225
Query: 143 KVAYMRLK 150
K A L+
Sbjct: 226 KAAMEELQ 233
>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
Length = 243
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 63 AAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG 122
A K L +L ++ F +D YK + QEL QK+ P+Y + + +++ F S V V
Sbjct: 146 AYKERLKNLDIENFDKD----YKTIFQELIQKKHKTSPIYKSYEYYDNNHEMFKSEVYVN 201
Query: 123 GEVFSGQGAKSKKQAEMSAAKVA 145
+ F+ KSKK+AE +AAK A
Sbjct: 202 DKNFALGVGKSKKEAETNAAKKA 224
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 144 VAYMRL 149
A+ L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H TF + V V G + G +SKK+AE AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 144 VAYMRL 149
A+ L
Sbjct: 228 SAWRTL 233
>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
Length = 246
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 62 EAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVE 120
+A K L +L ++ F +D YK + QEL QK+ PVY + + E++ F S V
Sbjct: 148 KAYKNRLNNLDIENFDKD----YKTIFQELIQKKHKTSPVYKSYEYHDENNHEMFKSEVY 203
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVA 145
V + FS KSKK+AE AAK A
Sbjct: 204 VNDKNFSSGIGKSKKEAETEAAKKA 228
>gi|40063138|gb|AAR37985.1| ribonuclease III, partial [uncultured marine bacterium 561]
Length = 149
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ + Q +NLPLP Y EGP HA F+ I GQ + + AE +AA
Sbjct: 80 KTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNAEQQAA 139
Query: 65 KVALMSLSLD 74
VA+ L D
Sbjct: 140 SVAIGELGND 149
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 144 VAY 146
A+
Sbjct: 231 SAW 233
>gi|296481330|tpg|DAA23445.1| TPA: adenosine deaminase, RNA-specific, B2 [Bos taurus]
Length = 785
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F V+V G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQFRMVSQTGPVHAPIFAVAVDVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ---GPALVSPDIQA-QADYSSSSLQ 177
AA++A + PN Q P ++PD + QAD+ + Q
Sbjct: 181 AAELALRSFVQLPNAGQAPPAPGGMAPDFTSDQADFPDALFQ 222
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 143 KVAYMRL 149
++ RL
Sbjct: 237 QLTLERL 243
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ + Q+ +YS E GP HA F +V+IDG TYE+ + K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEA-GTGKSKKIAEQHA 235
Query: 64 AKVALMSL 71
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL Q PVY K+SG H F V V G+ F ++KK AE AA
Sbjct: 205 YKSLLQELTQGLYRNYPVYRVLKRSGPEHDRFFWIEVSVEGKTFGPGMGRNKKAAEQEAA 264
Query: 143 KVAYMRLKEPNPSQGPALVSPD 164
++AY +E ++ PA S D
Sbjct: 265 RIAY---EEIGDTKTPADSSKD 283
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 143 KVAYMRL 149
++ RL
Sbjct: 237 QLTLERL 243
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ + Q+ +YS E GP HA F +V+IDG TYE+ + K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEA-GTGKSKKIAEQHA 235
Query: 64 AKVALMSL 71
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
norvegicus]
Length = 634
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ S P+ K A+ AA+ A+ +L
Sbjct: 64 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALQEEAANS 122
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 123 ADDQSGGANTDSLDESVAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 182
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 183 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
Length = 239
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
+K++LQ YTQK + P+YS EGP H RF+ ++T+ DGQ + + ++K+AE
Sbjct: 161 FKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPDGQVITAVE--KSVKKAEQT 218
Query: 63 AAKVALMSLS 72
AA AL +L
Sbjct: 219 AALRALEALG 228
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY+ +SG HA TF+ V + G + KSKK AE AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Query: 143 KVAYMRL 149
++ RL
Sbjct: 237 QLTLERL 243
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ + Q+ +YS E GP HA F +V+IDG TYE+ + K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGT-GKSKKIAEQHA 235
Query: 64 AKVALMSL 71
A++ L L
Sbjct: 236 AQLTLERL 243
>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
Length = 233
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
YK++LQ YTQK + P+Y+ + EGP H RF ++ + DG + + ++K+AE
Sbjct: 160 YKSRLQEYTQKVHKARPVYTLLDSEGPEHDKRFTVRLELPDGHALTAME--KSVKKAEQM 217
Query: 63 AAKVALMSLS 72
AA++AL +S
Sbjct: 218 AARLALEKIS 227
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K+ LQ + ++LP+P+Y+ ER GP HA RF+ V ++G H + + AE EAA
Sbjct: 180 KSALQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEG-LEPGHGEGTSKRVAEQEAA 238
Query: 65 KVALM 69
+ ALM
Sbjct: 239 R-ALM 242
>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus]
gi|38372251|sp|Q99MU3.2|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=RNA adenosine deaminase 1
gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
Length = 1178
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis
carolinensis]
Length = 698
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV VEV G+ F G G +KK+A++ A
Sbjct: 76 VLPKNALMQLNEIKP-GLQYKLISQTGPVHAPVFVMAVEVNGQAFEGSGP-TKKKAKLHA 133
Query: 142 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A+ A + PN S+ + + D++S
Sbjct: 134 AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 166
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL----------KEPNPS 155
+SGESHA FV V V G F G G ++KK A+ AA+ A L +P PS
Sbjct: 252 ESGESHAKNFVMAVSVDGHTFEGSG-RNKKLAKARAAQSALASLFNMQLDQTPSHQPIPS 310
Query: 156 QGPALVSPDIQAQA 169
+G L P + A A
Sbjct: 311 EGLQLHLPQVLADA 324
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ Y + LP Y ER GP HA RF+ +VT+ G+ E T +EAE AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEG--LAGTKREAEQNAA 213
Query: 65 K 65
+
Sbjct: 214 R 214
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE A LP Y +++G SHAP F V V G G A +K++AE +AA+
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEGL-AGTKREAEQNAAR 214
>gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2]
gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
[Methanococcus maripaludis S2]
Length = 230
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE + ++ N +++GE+H FV V+ G ++ KSKK+AEM AAK
Sbjct: 160 YKTKLQEFPELINKSINYVNLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAK 219
Query: 144 VAYMRL 149
A ++L
Sbjct: 220 NALLKL 225
>gi|149751348|ref|XP_001497601.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Equus
caballus]
Length = 1145
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 574 SCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASA-PSKKVAKQMAAEEAMKALHEEAANS 632
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
SLD + + V Y N L E A+ +A
Sbjct: 633 TPSDNQPGSTNTESLDNLESVIPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 692
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 693 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1178
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|357521527|ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
Length = 1214
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 43 DGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVY 102
DG+ HQ P LK+ S S D D+S KN LQ + + LP Y
Sbjct: 1086 DGRFVYGHQVLPQLKKETK--------SKSGDGAGGDNS---KNQLQTFLSRAGHQLPTY 1134
Query: 103 NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
T+ E F STV G F GQ SKK AE SAA A + LK N
Sbjct: 1135 KTQ---ELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDN 1182
>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
Length = 1152
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus]
gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
Length = 1152
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|373498045|ref|ZP_09588560.1| ribonuclease III [Fusobacterium sp. 12_1B]
gi|404367694|ref|ZP_10973056.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|371962085|gb|EHO79694.1| ribonuclease III [Fusobacterium sp. 12_1B]
Length = 235
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 63 AAKVALMSL--SLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVST 118
A K AL + S+D +++ +L +K +LQE +Q+E +P Y +++G H F
Sbjct: 138 AKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVIRETGPDHQKIFEIE 197
Query: 119 VEVGGEVFSGQGAKSKKQAEMSAAK 143
V++G G G K+KK AE SAAK
Sbjct: 198 VKIGDRTGRGTG-KNKKSAEQSAAK 221
>gi|340624837|ref|YP_004743290.1| ribonuclease III [Methanococcus maripaludis X1]
gi|339905105|gb|AEK20547.1| ribonuclease III [Methanococcus maripaludis X1]
Length = 228
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE + ++ N +++GE+H FV V+ G ++ KSKK+AEM AAK
Sbjct: 159 YKTKLQEFPELINKSINYVNLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAK 218
Query: 144 VAYMRL 149
A ++L
Sbjct: 219 NALLKL 224
>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
Length = 1173
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
Length = 1152
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 741
>gi|357632354|ref|ZP_09130232.1| ribonuclease III [Desulfovibrio sp. FW1012B]
gi|357580908|gb|EHJ46241.1| ribonuclease III [Desulfovibrio sp. FW1012B]
Length = 239
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
+K++LQ YTQK + P+YS EGP H RF+ ++T+ DGQ + + ++K+AE
Sbjct: 161 FKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPDGQVITAVE--KSVKKAEQM 218
Query: 63 AAKVALMSLS 72
AA AL +L
Sbjct: 219 AALRALEALG 228
>gi|444721725|gb|ELW62445.1| Double-stranded RNA-specific adenosine deaminase [Tupaia chinensis]
Length = 1234
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 66/175 (37%), Gaps = 35/175 (20%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL 68
L Y + ++ GPPH +F+ V + QT+ + P+ K A+ AA+ A+
Sbjct: 639 LLEYARSHGFAAEFKLVDQSGPPHEPKFQYCVAVGDQTFPTVSA-PSKKVAKQMAAEEAM 697
Query: 69 MSL--------------------SLDKFQQD---------DSVLYKNV-----LQELAQK 94
+L SLD + + V Y N L E A+
Sbjct: 698 KALHGEATNPASSDDQPGSANMDSLDNLEPGMPSKVRKIGELVRYLNTNPVGGLLEYARS 757
Query: 95 EAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+A QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 758 HGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 812
>gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
partial [Anolis carolinensis]
Length = 404
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 67/178 (37%), Gaps = 43/178 (24%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL-----KEAEHEA 63
L Y QK ++GPPH +FK V I Q FP + K A+ A
Sbjct: 88 LMEYAQKSGSVCEFQLLAQDGPPHDPKFKYCVKI------GDQVFPAVVSNSKKGAKQMA 141
Query: 64 AKVALMSLSLDK--FQQDDSVLY----------------KNV--------------LQEL 91
A+ A+ LS D F + + + + K V L E
Sbjct: 142 AEAAIRGLSGDMSIFAEQEDLAFELSGSQAVEEPKASSAKGVGELIKYLNSNPVSGLLEY 201
Query: 92 AQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
A+ A+A +Q+G H P FV +VGG F A SKKQ + AA A L
Sbjct: 202 ARANAFAAEFKLIEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQEAADAALRVL 259
>gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701]
gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701]
Length = 259
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 2 QHLYKNQLQSYTQKKNLPLPMYSCE----REGPPHASRFKCKVTIDGQTYESHQFFPTLK 57
+H +K LQ ++Q + L LP Y CE R G P RF C V + GQ + + +
Sbjct: 176 RHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPR--RFHCSVDLKGQPV-GEGWGGSRR 232
Query: 58 EAEHEAAKVAL 68
+AE +AA+ AL
Sbjct: 233 DAEQQAARSAL 243
>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K LQELAQ A P Y + G H+ TF E+ GEV +SKK AE +AA
Sbjct: 175 FKTQLQELAQSRVRATPRYRVVGEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAA 234
Query: 143 KVAY 146
K+
Sbjct: 235 KIGL 238
>gi|392374480|ref|YP_003206313.1| ribonuclease 3 [Candidatus Methylomirabilis oxyfera]
gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Candidatus
Methylomirabilis oxyfera]
Length = 246
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQ LAQ +A P Y ++SG HAPTF V VG + +++++AE +AA+
Sbjct: 165 KTALQHLAQSLLHATPRYRLIRRSGAPHAPTFEVEVIVGQSPIAKGKGRNRQEAERAAAQ 224
Query: 144 VAYMRLKEPNPS 155
A L+EP+ +
Sbjct: 225 DALSSLREPSAT 236
>gi|373252029|ref|ZP_09540147.1| ribonuclease III [Nesterenkonia sp. F]
Length = 227
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K +QE+A Y + SG H TF +T+ VGG +S KSKK+AE AA+
Sbjct: 146 WKTTIQEVAADRDLGDIRYVMEDSGPDHDKTFTATLTVGGVAYSSGTGKSKKEAEREAAR 205
Query: 144 VAYMRLKEPNPSQG 157
+ L +G
Sbjct: 206 LTAATLTAGEADRG 219
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 78 QDDSVL--YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
Q +++L YK LQE++Q++ A+PVY + G H F + + ++F KSK
Sbjct: 171 QTENILKDYKTRLQEVSQEKFRAVPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNGEGKSK 230
Query: 135 KQAEMSAAKVAYMRL 149
KQAE +AA++A +L
Sbjct: 231 KQAEQNAARMALAKL 245
>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
Length = 1152
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDKSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAALRVL 741
>gi|377564338|ref|ZP_09793660.1| ribonuclease III [Gordonia sputi NBRC 100414]
gi|377528520|dbj|GAB38825.1| ribonuclease III [Gordonia sputi NBRC 100414]
Length = 261
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA 131
LD+ Q + L +K LQELA + Y P Y +G H+ F + + GE
Sbjct: 175 LDRAGQLGAGLDWKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVG 234
Query: 132 KSKKQAEMSAAKVAYMRLKE 151
++KK+AE AA +A+ L E
Sbjct: 235 RTKKEAEQKAASLAWQALTE 254
>gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902]
gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902]
Length = 249
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHA--PTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
K +LQE +Q E LP Y T + H F S VEVG + + +S+K+AE +AA
Sbjct: 166 KTMLQEWSQAEGLGLPNYTTTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAA 225
Query: 143 KVAYMRLKE 151
A RL++
Sbjct: 226 TEAVQRLQD 234
>gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus]
Length = 883
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y KK L P+Y C GP H F KV ++G Y+ P K+A+ EAA++
Sbjct: 815 LGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQIC 874
Query: 68 LMSLSL 73
L SL L
Sbjct: 875 LQSLGL 880
>gi|429765782|ref|ZP_19298062.1| ribonuclease III [Clostridium celatum DSM 1785]
gi|429185635|gb|EKY26609.1| ribonuclease III [Clostridium celatum DSM 1785]
Length = 232
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK +LQ Y QK +Y + EGPPH +F K+ ID + + + + KE+E A
Sbjct: 161 YKTRLQEYLQKNGEISIVYELIKFEGPPHRRKFYTKLIIDNKEFTCGEGYSK-KESEQNA 219
Query: 64 AKVALMSL 71
AK AL SL
Sbjct: 220 AKAALKSL 227
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H F +TV V G F +KK+AE AA+
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAE 214
Query: 144 VAYMRLKEPNPSQG 157
A+ L E +G
Sbjct: 215 TAWRALSEELKPEG 228
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ + + T KEAE +AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDF-GNGNGTTKKEAEQKAA 213
Query: 65 KVALMSLS 72
+ A +LS
Sbjct: 214 ETAWRALS 221
>gi|194665306|ref|XP_581374.4| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|297472608|ref|XP_002686059.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|296489763|tpg|DAA31876.1| TPA: RNA adenosine deaminase-like [Bos taurus]
Length = 1149
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 578 SCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASA-PSKKAAKQMAAEEAMKALQGEATSS 636
Query: 72 ----------SLDKFQQDDSVLYKNV-----------------LQELAQKEAYALPVYNT 104
+ + F +SV+ V L E A+ +A
Sbjct: 637 TSSEDQPGSTNTEAFDNLESVMPNKVRRISELVRYLNTNPVGGLLEYARSHGFAAEFKLV 696
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 697 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 741
>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1152
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 582 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 640
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 641 ADDXSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 700
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ AA A L
Sbjct: 701 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAALRVL 741
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y +G H F + V VGG +KK+AE AA+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGDGTTKKEAEQKAAE 229
Query: 144 VAYMRLKEPNPSQGPALVSPDIQAQAD 170
A+ L E S PA A AD
Sbjct: 230 SAWRALNEELRSHPPATAGDGADAPAD 256
>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
Length = 225
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q +P Y K +SG HA F + + +++ AKSKK+A+ A
Sbjct: 153 YKSALQELTQARFKVVPTYTLKSESGPDHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCA 212
Query: 143 KVAYMRLK 150
++AY +L+
Sbjct: 213 QMAYQQLR 220
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 40 VTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYAL 99
+ +D + F + EAE +S L+K D YK++LQEL Q+ +
Sbjct: 123 IYLDSGYKAAFAFVVSFMEAE--------ISRVLEKRHHQD---YKSLLQELCQRLYHNY 171
Query: 100 PVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
PVY K+SG HA F V V + ++KK AE AAK+AY
Sbjct: 172 PVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAAKMAY 219
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE SAA
Sbjct: 172 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAEASAA 231
Query: 143 KVA 145
KVA
Sbjct: 232 KVA 234
>gi|410942221|ref|ZP_11374008.1| ribonuclease III [Leptospira noguchii str. 2006001870]
gi|410782476|gb|EKR71480.1| ribonuclease III [Leptospira noguchii str. 2006001870]
Length = 247
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK LP+Y K +SG HA TF V++ + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKILPIYRIKSESGPDHAKTFQVVVKIRDQWEAIGSGVSKKSAEQNAA 236
Query: 143 KVAYMRLKE 151
K Y R+++
Sbjct: 237 KELYNRIRK 245
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I Q +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKILPIYRIKSESGPDHAKTFQVVVKIRDQ-WEAIGSGVSKKSAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
Length = 234
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ ++N+ P Y+ E EGP HA F V IDG+ + Q K AE AA
Sbjct: 166 WKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEILGTGQGTAK-KHAEQIAA 224
Query: 65 KVALMSLS 72
+ A ++L+
Sbjct: 225 EQAYVALT 232
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 142
+K LQE A + P Y ++ G HA F + V + GE+ +GQG +KK AE AA
Sbjct: 166 WKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEILGTGQG-TAKKHAEQIAA 224
Query: 143 KVAYMRL 149
+ AY+ L
Sbjct: 225 EQAYVAL 231
>gi|359408393|ref|ZP_09200863.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676587|gb|EHI48938.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
Length = 239
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K+ LQE A Y P+Y+ Q+G +H P F +VEV G S +++KQAE AA+
Sbjct: 164 KSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEVSGLGVSAGEGRTRKQAEREAAR 223
Query: 144 VAYMRLKEPNPSQ 156
+ N Q
Sbjct: 224 QFLLHYVHKNKGQ 236
>gi|340757909|ref|ZP_08694501.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
gi|251836195|gb|EES64732.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
Length = 235
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 63 AAKVALMSL--SLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVST 118
A K AL + S+D +++ +L +K +LQE +Q+E +P Y +++G H F
Sbjct: 138 AKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVIRETGPDHQKVFEIE 197
Query: 119 VEVGGEVFSGQGAKSKKQAEMSAAK 143
V +G G G K+KK AE SAAK
Sbjct: 198 VRIGERTGRGTG-KNKKSAEQSAAK 221
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + SG H F +TV V G +KK+AE AA+
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAE 229
Query: 144 VAYMRLKE 151
A+ L E
Sbjct: 230 TAWRALSE 237
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ T KEAE +AA
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRAL-GEGNGTTKKEAEQKAA 228
Query: 65 KVALMSLSLDKFQQDDS 81
+ A +LS + DD+
Sbjct: 229 ETAWRALSEELGTGDDA 245
>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
gi|167655280|gb|EDR99409.1| ribonuclease III [Eubacterium siraeum DSM 15702]
gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
Length = 226
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVF 126
L LS KF D YK VLQE+ Q+ Y + +SG++H F + V + G++
Sbjct: 142 LDKLSTGKFLLGD---YKTVLQEIIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQII 198
Query: 127 SGQGAKSKKQAEMSAAKVA 145
KSKK+AE SAAK A
Sbjct: 199 GTGKGKSKKEAEQSAAKEA 217
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +PVY +G H F +TV V G F ++KK+AE AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQKAAS 197
Query: 144 VAYMRLKE 151
A+ L +
Sbjct: 198 SAWQTLTD 205
>gi|448823447|ref|YP_007416612.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
gi|448276944|gb|AGE36368.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
Length = 245
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K +Q ++ +LP+P Y GP H F +T+DG+ Q T KEAEH+AA
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLTLDGKERTRGQ-GRTKKEAEHQAA 234
Query: 65 KVALMSLS 72
+ + LS
Sbjct: 235 RAMVEELS 242
>gi|359727275|ref|ZP_09265971.1| ribonuclease III [Leptospira weilii str. 2006001855]
Length = 266
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 252
Query: 142 AKVAYMRLK 150
AK Y++++
Sbjct: 253 AKELYIQIR 261
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 252
Query: 64 AKVALMSLSLD 74
AK + + D
Sbjct: 253 AKELYIQIRRD 263
>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
Length = 226
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVF 126
L LS KF D YK VLQE+ Q+ Y + +SG++H F + V + G++
Sbjct: 142 LDKLSTGKFLLGD---YKTVLQEIIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQII 198
Query: 127 SGQGAKSKKQAEMSAAKVA 145
KSKK+AE SAAK A
Sbjct: 199 GTGKGKSKKEAEQSAAKEA 217
>gi|449496746|ref|XP_002191239.2| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Taeniopygia guttata]
Length = 552
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES----------- 49
M Y ++ Y Q + L L + + GP H F V I+GQ Y +
Sbjct: 1 MDREYMTKINHYCQTRKLKLVYETVDMTGPSHYPEFTVVVKINGQKYGTGTGKSKKEAKA 60
Query: 50 ---HQFFPTLKEAEHEAAKVALMSLSLDKF----QQDDSVLYKNVLQELAQKEAYALPVY 102
+ + ++E + A+ +A L+ + +QD++ Y L +Q+ +
Sbjct: 61 VAAKETWEMIEEQQRSASNMAAAELTTSQPTSSPEQDEN--YVGRLNNFSQRTGLLVDYP 118
Query: 103 NTKQSGESHAPTFVSTVEVGGEVFSGQGA 131
N ++G HAPT+ + + G V+ G+GA
Sbjct: 119 NRNRTGGDHAPTYTVSCTISGYVY-GRGA 146
>gi|417782087|ref|ZP_12429820.1| ribonuclease III [Leptospira weilii str. 2006001853]
gi|410777680|gb|EKR62325.1| ribonuclease III [Leptospira weilii str. 2006001853]
Length = 266
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 252
Query: 142 AKVAYMRLK 150
AK Y++++
Sbjct: 253 AKELYIQIR 261
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 194 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 252
Query: 64 AKVALMSLSLD 74
AK + + D
Sbjct: 253 AKELYIQIRRD 263
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y +G H F +T +GG + ++KK+AE AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQKAAS 233
Query: 144 VAYMRLKEPNPSQ 156
A+ L E ++
Sbjct: 234 AAWNALTEGTAAE 246
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y GP H F I G Y + T KEAE +AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGT-GVGRTKKEAEQKAA 232
Query: 65 KVALMSLS 72
A +L+
Sbjct: 233 SAAWNALT 240
>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase,
partial [Sus scrofa]
Length = 1171
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 600 SCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASA-PSKKAAKQLAAEEAMKALHREATSS 658
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
S D + + V Y N L E A+ +A
Sbjct: 659 LSSDNQPGSTNSESFDNLESMMPNKVRRVGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 718
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 719 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 763
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 143 KVAYMRL 149
++ +L
Sbjct: 236 QLTLEKL 242
>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus]
Length = 930
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 392
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 393 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 452
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 87 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 144
VL EL K + P Y + SG SH+ F +VE+ G+ ++ QG SKK+A+++AAK+
Sbjct: 781 VLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKL 840
Query: 145 AYMRL 149
L
Sbjct: 841 CLRAL 845
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L T K P Y+ + GP H+ F+ V I+GQTY Q + KEA+ AAK+
Sbjct: 782 LNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKLC 841
Query: 68 LMSLSL 73
L +L +
Sbjct: 842 LRALGI 847
>gi|417515465|gb|JAA53561.1| adenosine deaminase, RNA-specific [Sus scrofa]
Length = 1145
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 574 SCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASA-PSKKAAKQLAAEEAMKALHREATSS 632
Query: 72 -------------SLDKFQQ---------DDSVLYKNV-----LQELAQKEAYALPVYNT 104
S D + + V Y N L E A+ +A
Sbjct: 633 LSSDNQPGSTNSESFDNLESMMPNKVRRVGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 692
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 693 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 737
>gi|395539825|ref|XP_003771866.1| PREDICTED: double-stranded RNA-specific editase B2, partial
[Sarcophilus harrisii]
Length = 718
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 97 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMR 154
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 155 AAELALKSFVQFPNACQAHFAMGNGISPSTDFTS 188
>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
Length = 930
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 334 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 392
Query: 72 -----------SLDKFQQDDS-------VLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD+ + V Y N L E A+ +A QSG
Sbjct: 393 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 452
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 493
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +P Y G H F +TV V GE ++KK+AE AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTGRTKKEAEQKAAG 273
Query: 144 VAYMRL 149
A+ L
Sbjct: 274 AAWRHL 279
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T ++ L +P Y +GP H F V + G+ S T KEAE +AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGT-GRTKKEAEQKAA 272
Query: 65 KVALMSLSLD 74
A LS D
Sbjct: 273 GAAWRHLSSD 282
>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Anolis carolinensis]
Length = 329
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 9 LQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y K NL P+Y CE G H F KVT+ T P+ K A+H AA+ A
Sbjct: 58 LHEYGTKANLN-PIYECENAAGEVHMPIFTYKVTLGNVTGTGEG--PSKKIAKHRAAEAA 114
Query: 68 LMSL---SLDKFQQDDSVLYKNV------------LQELAQKEAYALPVYNTKQ-SGESH 111
L + S+ D ++ V LQELA ++ + LP Y+ Q +G H
Sbjct: 115 LNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAIQKGWKLPEYSMAQETGPPH 174
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
F T + V +G G SKK A+ +AA+
Sbjct: 175 KREFTVTCRIEAFVETGMGT-SKKLAKRNAAE 205
>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|122284510|sp|Q053L4.1|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
Length = 247
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQWEASGYGA-SKKIAEQNA 235
Query: 142 AKVAYMRLK 150
AK Y+R++
Sbjct: 236 AKELYIRIR 244
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I Q +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKMFQVSVRIRDQ-WEASGYGASKKIAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 234
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL+ + + P Y +G H F + VGG+ K+KK+AE AA+
Sbjct: 164 WKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAE 223
Query: 144 VAYMRLKE 151
+A+ L+E
Sbjct: 224 LAWKALEE 231
>gi|456862113|gb|EMF80691.1| ribonuclease III [Leptospira weilii serovar Topaz str. LT2116]
Length = 181
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 109 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 167
Query: 142 AKVAYMRLK 150
AK Y++++
Sbjct: 168 AKELYIQIR 176
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 109 YKTQLQEYSQKHFKTLPVYRMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 167
Query: 64 AKVALMSLSLD 74
AK + + D
Sbjct: 168 AKELYIQIRRD 178
>gi|426218981|ref|XP_004003711.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Ovis
aries]
Length = 1155
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 584 SCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASA-PSKKAAKQMAAEEAMKALQGEATSS 642
Query: 72 ----------SLDKFQQDDSVLYKNV-----------------LQELAQKEAYALPVYNT 104
+ + F +SV+ V L E A+ +A
Sbjct: 643 ASSDDQPGSTNTEAFDTLESVMPNKVRRISELVRYLNTNPVGGLLEYARSHGFAAEFKLV 702
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 703 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 747
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE QK+ PVY K++G H TF +V + + K+KK+AE SAA
Sbjct: 185 YKTLLQEFYQKKYKECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAA 244
Query: 143 KVAY 146
++A+
Sbjct: 245 RLAW 248
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 85 KNVLQELAQKEAYALP-VYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
KN QE Q+E A P Y T+Q G SHAP FV+ V V G+ + ++KK+AE AA
Sbjct: 155 KNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEYGIGKGRNKKEAEKDAA 214
Query: 143 KVAYMRLK 150
+ A +LK
Sbjct: 215 EDALAKLK 222
>gi|334348787|ref|XP_001373773.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Monodelphis domestica]
Length = 715
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 93 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMR 150
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 151 AAELALKSFVQFPNACQAHFAMGNGISPSTDFTS 184
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY+ +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 143 KVAYMRL 149
++ +L
Sbjct: 236 QLTLEKL 242
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y Q+ +Y E GP HA F +V I+G TYE+ + K AE A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGS-GKSKKIAEQHA 234
Query: 64 AKVALMSLSLDK 75
A++ L L DK
Sbjct: 235 AQLTLEKLMADK 246
>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
gi|123534042|sp|Q2SL32.1|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
Length = 226
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K +LQ Y Q + L LP Y +G HA F + IDG + + + + AE +AA
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 65 KVALMSLSLDK 75
K AL++L +D+
Sbjct: 216 KQALLALGVDQ 226
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K++LQE AQ++ ALP+Y K+ G +H+PTF +V G G KSKK+AE +AA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIGIG-KSKKEAEQNAAT 209
Query: 144 VAYMRLKE 151
++ E
Sbjct: 210 ALLSQINE 217
>gi|444731290|gb|ELW71648.1| Double-stranded RNA-specific editase B2 [Tupaia chinensis]
Length = 847
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 112 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 169
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + + D++S
Sbjct: 170 AAELALKSFVQFPNACQAHLAMGSGVSPCTDFTS 203
>gi|384515974|ref|YP_005711066.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|397654323|ref|YP_006495006.1| ribonuclease III [Corynebacterium ulcerans 0102]
gi|334697175|gb|AEG81972.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|393403279|dbj|BAM27771.1| ribonuclease III [Corynebacterium ulcerans 0102]
Length = 249
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 44 GQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL----YKNVLQELAQKEAYAL 99
G Y +H F EAA+ ++ L K +V +K LQE A + +
Sbjct: 142 GAIYLAHGF---------EAARATVLRLFQKKIDTASAVGMHQDWKTTLQERAAERKLPV 192
Query: 100 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155
PVY +G H+ TF + V VG +KK AE +AA A + L+E NP+
Sbjct: 193 PVYEASSTGPEHSQTFTAVVTVGTTALGEGVGPNKKLAEQAAAHKAVVFLQE-NPT 247
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M +K LQ ++ LP+P+Y GP H+ F VT+ G T P K AE
Sbjct: 173 MHQDWKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTV-GTTALGEGVGPNKKLAE 231
Query: 61 HEAAKVALMSL 71
AA A++ L
Sbjct: 232 QAAAHKAVVFL 242
>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
Length = 240
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K+ +Q TQK+ L P Y EGPPH F ++ IDGQ Y S Q ++K AE AA
Sbjct: 169 KSLIQEETQKRGLGQPCYVVISTEGPPHMPIFTVQLKIDGQLYGSGQ-GHSIKVAETLAA 227
Query: 65 KVALMSLSL 73
+ AL + L
Sbjct: 228 QRALKQVGL 236
>gi|441509918|ref|ZP_20991830.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
gi|441445933|dbj|GAC49791.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
Length = 261
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQELA + Y P Y +G H+ F + + GE ++KK+AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGIGRTKKEAEQKAAS 246
Query: 144 VAYMRLKE 151
+A+ L E
Sbjct: 247 LAWQALTE 254
>gi|432958614|ref|XP_004086071.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 645
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L++L + L +QSG HAP FV VEV G F G G +KK+A++SAA
Sbjct: 55 LPKNALEQLNELRP-GLQYTLLRQSGPVHAPLFVMQVEVDGRFFQGAGL-TKKKAKLSAA 112
Query: 143 KVAYMRL 149
+ A L
Sbjct: 113 EQALQSL 119
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE+ QK+ LP Y K+ G+ H TF V + G + KSKK AE +AA
Sbjct: 163 YKTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIGKSKKDAEKNAA 222
Query: 143 KVAYMRLKEPN 153
K A +L++ +
Sbjct: 223 KEAVKKLEQND 233
>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain-containing protein
[Marinithermus hydrothermalis DSM 14884]
gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 158
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 143
K+ L + + A P ++T+ +G H P F+S V V G V +GQG ++K++AE AA+
Sbjct: 5 KSALIAYCRTKGLAGPEFDTRGTGPEHDPLFISDVMVNGTVVATGQG-RTKREAERIAAE 63
Query: 144 VAYMRLK 150
+AY LK
Sbjct: 64 LAYEALK 70
>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
cuniculus]
Length = 1150
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L
Sbjct: 576 SCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASA-PSKKVAKQMAAEEAMKALQEEAANP 634
Query: 72 -------------SLDKFQQD---------DSVLYKNV-----LQELAQKEAYALPVYNT 104
SL+ + + V Y N L E A+ +A
Sbjct: 635 TASDDQSGGSNTESLEALESGLPSKVRKVGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 694
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 695 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739
>gi|449276158|gb|EMC84820.1| Double-stranded RNA-specific editase B2, partial [Columba livia]
Length = 682
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 117
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 118 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 151
>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
gallopavo]
Length = 720
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 98 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 155
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 156 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 189
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY +SG HA TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 143 KVAYMRL 149
++ +L
Sbjct: 236 QLTLEKL 242
>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
Length = 260
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++L E AQ + P Y + G SHA TF +G A SKKQAE AA
Sbjct: 183 YKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAA 242
Query: 143 KVAYMRLK 150
+ A RL+
Sbjct: 243 REALARLQ 250
>gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum]
Length = 850
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 25 CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ---QDDS 81
E GP HA FK V ++ + Y + ++A + ++ S+S +K + +D+
Sbjct: 114 VEEIGPSHAPTFKMAVKVNEKIYYGKG--GSKQKARDDVTQIVYNSISKNKVKPTIKDEK 171
Query: 82 VLYKNVLQELAQ----KEAYALPVYN---TKQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
+NV+ +L++ K Y P+ +Q G SHAPTF +V G+++ G G SK
Sbjct: 172 NEPRNVIIDLSKLKKNKLEYLKPLLKFTLIEQIGPSHAPTFKMAAKVNGKLYFGNGG-SK 230
Query: 135 KQAEMSAAK 143
++A+ S +
Sbjct: 231 QKAQTSVTQ 239
>gi|431893769|gb|ELK03587.1| Double-stranded RNA-specific editase 1 [Pteropus alecto]
Length = 531
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L E+ YAL Q+G HAP FV VEV G+ F G G KK +A K
Sbjct: 3 LNEIRPGLQYAL----LSQTGPVHAPLFVVAVEVNGQAFEGAGPTKKKAKLHAAEKALRS 58
Query: 148 RLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGR 193
++ PN ++ + + A D++S Q+ L + +T R
Sbjct: 59 FVQFPNAAEAHLALGRGLPANTDFTSD--QAGFPDALFNGFETPDR 102
>gi|337291062|ref|YP_004630083.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
gi|334699368|gb|AEG84164.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
Length = 249
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 44 GQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL----YKNVLQELAQKEAYAL 99
G Y +H F EAA+ ++ L K +V +K LQE A + +
Sbjct: 142 GAIYLAHGF---------EAARATVLRLFQKKIDTASAVGMHQDWKTTLQERAAERKLPV 192
Query: 100 PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155
PVY +G H+ TF + V VG +KK AE +AA A + L+E NP+
Sbjct: 193 PVYEASSTGPEHSQTFTAVVTVGTTALGEGIGPNKKLAEQAAAHKAVVFLQE-NPT 247
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 60
M +K LQ ++ LP+P+Y GP H+ F VT+ G T P K AE
Sbjct: 173 MHQDWKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTV-GTTALGEGIGPNKKLAE 231
Query: 61 HEAAKVALMSL 71
AA A++ L
Sbjct: 232 QAAAHKAVVFL 242
>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
Length = 732
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 87 VLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+L E K + +P +NT +SG SH TF+ TV V G + ++KK A+M AAK
Sbjct: 661 LLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSSRCQTKKLAKMEAAK 718
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q++ + Y + G +H FVS V + G+ +SKK+AE AA
Sbjct: 176 YKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSKKEAEQHAA 235
Query: 143 KVAYMRLK------EPNPSQ 156
++A +LK E NP Q
Sbjct: 236 QMALEKLKKSFIQNENNPEQ 255
>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
Length = 74
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 142 AKVA 145
A+ A
Sbjct: 62 AEKA 65
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQAEMSA 141
+YK+ LQ+L+Q+ + +P + G+ H+P F +TV V +FS + S K+A+ +A
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 142 AKVAY 146
AK A+
Sbjct: 61 AKQAH 65
>gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus
labiatus]
Length = 552
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 24/196 (12%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY---ESHQFFPTLKEAE 60
+ +L Y QK+ + L GPPH RF +V IDG+ + E A
Sbjct: 9 FFMEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEAKNAAA 68
Query: 61 HEAAKV------ALMSLSL---DKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 111
A ++ A+ LSL D ++ Y ++ +AQKE + Y SG +
Sbjct: 69 KVAVEILNKENKAVSPLSLTPTDSSERSSIGNYIGLINRIAQKERLTVN-YEQCASGVNG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
F +VG + + +K++A+ AAK+AY+++++ S + +AD
Sbjct: 128 PEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQIRK----------SEETSVKAD- 176
Query: 172 SSSSLQSNVTADLHHN 187
S+SS+ D+ +N
Sbjct: 177 STSSVSFTPVCDIQNN 192
>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
Length = 230
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 75 KFQQDD----SVLY--KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFS 127
+F DD S+ Y K+ LQELAQKE L ++ G H ++VS V + GE V +
Sbjct: 145 RFLLDDVETHSLFYDAKSTLQELAQKEEKTLTYALLEEKGPDHNKSYVSEVCINGEHVAT 204
Query: 128 GQGAKSKKQAEMSAAKVAYMRLKEP 152
G+GA S+K +E +AA A +++K+
Sbjct: 205 GEGA-SRKASEQTAAYNALLQIKKK 228
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++L E AQ + P Y + G SHA TF +G A SKKQAE AA
Sbjct: 183 YKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQAA 242
Query: 143 KVAYMRLK 150
+ A RL+
Sbjct: 243 REALARLQ 250
>gi|335296679|ref|XP_003130894.2| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
scrofa]
Length = 1000
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 60 EHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 119
E ++ + L L K SV KN L +L + L Q+G HAP F V
Sbjct: 370 EGAGGRLCQLQLVLRKLSW--SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAV 426
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQ---------GPALVSPDIQA-Q 168
+V G F G G +KK+A+M AA++A + PN Q GPA PD + Q
Sbjct: 427 DVNGLTFEGTG-PTKKKAKMRAAELALRSFVQFPNACQAHLALGGSGGPA---PDFTSDQ 482
Query: 169 ADYSSSSLQ 177
AD+ + Q
Sbjct: 483 ADFPDTLFQ 491
>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
Length = 73
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
VL KN L +L + + L Q+G HAP FV +VEV G+VF G G +KK+A++ A
Sbjct: 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 142 AKVA 145
A+ A
Sbjct: 62 AEKA 65
>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Ailuropoda melanoleuca]
Length = 1144
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 576 SCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASA-PSKKVAKQMAAEEAVKALHGEASSS 634
Query: 72 -------------SLDKFQQD---------DSVLYKNV-----LQELAQKEAYALPVYNT 104
S D + + V Y N L E A+ +A
Sbjct: 635 APADPQLGGTNTESFDNLESGMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 694
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 695 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739
>gi|344286449|ref|XP_003414970.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Loxodonta africana]
Length = 1154
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 583 SCEFRLLSREGPAHDPKFQYCVAMGPHTFPTASA-PSKKVAKQMAAEEAMKALHGEATNS 641
Query: 72 ----------SLDKFQQDDSVLYKNV-----------------LQELAQKEAYALPVYNT 104
+ + F +S++ V L E A+ +A
Sbjct: 642 TPSDDQPGGTNTESFDNLESIMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 701
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 702 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 746
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H F +TV VGG +KK+AE AA+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKAAE 229
Query: 144 VAYMRL 149
A+ +L
Sbjct: 230 TAWRQL 235
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ + T KEAE +AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGREL-GYGSGTTKKEAEQKAA 228
Query: 65 KVALMSLS 72
+ A LS
Sbjct: 229 ETAWRQLS 236
>gi|359687900|ref|ZP_09257901.1| ribonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751524|ref|ZP_13307810.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
gi|418758724|ref|ZP_13314906.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384114626|gb|EIE00889.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274127|gb|EJZ41447.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
Length = 268
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 62 EAAKVALMSLSLDKFQQDDSVL----YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFV 116
EAA+ ++ +D + D V YK+VLQE+ QK+ LP Y K+ G H TF
Sbjct: 172 EAAEKFILEHLIDYIKNSDKVREATDYKSVLQEICQKKFKLLPSYRLLKEVGPDHEKTFY 231
Query: 117 STVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRLK 150
+V + + FS +G K+KK AE AAK LK
Sbjct: 232 VSVSIR-DKFSAEGKGKNKKFAEQDAAKQLLKSLK 265
>gi|432909594|ref|XP_004078197.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
[Oryzias latipes]
Length = 1336
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 49/189 (25%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL 68
L Y+Q+ P+ + + GPPH RFK +V + G+ + P+ K A AA+ A+
Sbjct: 714 LMEYSQRSGKPIEFIATGQTGPPHDPRFKYRVKV-GENLFAESSAPSKKAARQLAAEEAV 772
Query: 69 MSLSLD-KFQQDDSVLYKNV---------------------------------------- 87
L D K Q + +L +
Sbjct: 773 KELMADGKLQLNKPLLPLGLSGDCDEGSSSGAACPSLPPLTADELRAAHEAGVGDLINHL 832
Query: 88 -------LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
L E A+ +A + QSG H P F ++GG F A +KKQ +
Sbjct: 833 NNNAVSGLLEYARARGFAAEIRLVGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGKQE 892
Query: 141 AAKVAYMRL 149
AA A L
Sbjct: 893 AADAALRVL 901
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 81 SVLY--KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSG-QGAKSKKQA 137
SV Y K LQEL QK +Y LP Y T G H P F STV V F+ + A + K +
Sbjct: 27 SVAYERKQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKAS 86
Query: 138 EMSAAKVAY 146
+ AA VA+
Sbjct: 87 QEFAAMVAF 95
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K +LQ QK + PLP Y EGP H F VT+ ++ S + TLK ++ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 66 VAL 68
VA
Sbjct: 93 VAF 95
>gi|443673520|ref|ZP_21138582.1| Ribonuclease III [Rhodococcus sp. AW25M09]
gi|443413903|emb|CCQ16920.1| Ribonuclease III [Rhodococcus sp. AW25M09]
Length = 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + A +P Y + +G H F +TV VG +SKK+AE AA
Sbjct: 179 WKTSLQELTAERALGVPAYAIESTGPDHDKEFTATVLVGESPLGVGVGRSKKEAEQKAAS 238
Query: 144 VAYMRL 149
+A+ L
Sbjct: 239 LAWNAL 244
>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
Length = 228
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 64 AKVALMSLSLDKFQQ--DDSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVE 120
AK ++ L D+ Q D+ K LQE AQ P Y T + G HAP F T
Sbjct: 136 AKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTDRQGPDHAPVFTITAR 195
Query: 121 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
+ + A SK+QAE +AAK +L+ P+
Sbjct: 196 IENGASAVASAPSKRQAEQAAAKTLLAQLERPS 228
>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
Length = 229
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 127
L L ++ F +D YK +LQE+ QK+ P Y + + E+ F V V + ++
Sbjct: 149 LNKLDINNFDKD----YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYA 204
Query: 128 GQGAKSKKQAEMSAAKVA 145
KSKK+AE++AAK A
Sbjct: 205 SGVGKSKKEAEINAAKKA 222
>gi|359424778|ref|ZP_09215889.1| ribonuclease III [Gordonia amarae NBRC 15530]
gi|358239922|dbj|GAB05471.1| ribonuclease III [Gordonia amarae NBRC 15530]
Length = 274
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL+ + P Y +G H F +T VGGE +SKK+AE AA
Sbjct: 170 WKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIVGGEEMGTGVGRSKKEAEQKAAA 229
Query: 144 VAYMRLKEPNPSQGPALVSPD 164
+A+ L N + G +P+
Sbjct: 230 LAWEELN--NRATGAGDTAPE 248
>gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator]
Length = 891
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y KK L P+Y C GP H F KV ++G Y+ P K+A+ EAA++
Sbjct: 823 LGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQIC 882
Query: 68 LMSLSL 73
L +L L
Sbjct: 883 LQTLGL 888
>gi|363729628|ref|XP_418563.3| PREDICTED: double-stranded RNA-specific editase B2 [Gallus gallus]
Length = 792
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 181 AAELALKSFVQFPNACQAHFAMGNCINPSTDFTS 214
>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
Length = 229
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 127
L L ++ F +D YK +LQE+ QK+ P Y + + E+ F V V + ++
Sbjct: 149 LNKLDINNFDKD----YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYA 204
Query: 128 GQGAKSKKQAEMSAAKVA 145
KSKK+AE++AAK A
Sbjct: 205 SGIGKSKKEAEINAAKKA 222
>gi|355667100|gb|AER93758.1| adenosine deaminase, RNA-specific [Mustela putorius furo]
Length = 456
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALM--------S 70
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ S
Sbjct: 280 SCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSA-PSKKVAKQMAAEEAMKALHGEATSS 338
Query: 71 LSLDKFQQDDS---------------------VLYKNV-----LQELAQKEAYALPVYNT 104
+ LD D S V Y N L E A+ +A
Sbjct: 339 IPLDTQPGDTSTEPFDNLQSGLPSKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLV 398
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 399 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 443
>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 229
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS 127
L L ++ F +D YK +LQE+ QK+ P Y + + E+ F V V + ++
Sbjct: 149 LNKLDINNFDKD----YKTILQEIVQKKYKITPTYKSYEYNENDNIMFKVEVYVKTKKYA 204
Query: 128 GQGAKSKKQAEMSAAKVA 145
KSKK+AE++AAK A
Sbjct: 205 SGIGKSKKEAEINAAKKA 222
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 172 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 231
Query: 143 KVA 145
KVA
Sbjct: 232 KVA 234
>gi|428211293|ref|YP_007084437.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
gi|427999674|gb|AFY80517.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
Length = 386
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 85 KNVLQELAQKEAY-ALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
KN QE QK P Y T QSG H+P F V+VG EV+ +SKK+AE AA
Sbjct: 317 KNRFQEWVQKNLGPTQPKYETIAQSGPDHSPDFTVEVKVGNEVYGVGKGRSKKEAEKRAA 376
Query: 143 KVA 145
++A
Sbjct: 377 ELA 379
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q + P Y T SG H F++ V VF+ +SKK+AE +AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 143 KVA 145
KVA
Sbjct: 221 KVA 223
>gi|421100758|ref|ZP_15561379.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
gi|410796156|gb|EKR98294.1| ribonuclease III [Leptospira borgpetersenii str. 200901122]
Length = 247
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK LPVY K +SG H+ TF +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYYMKGESGPDHSKTFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 142 AKVAYMRLK 150
AK Y++++
Sbjct: 236 AKELYVQIR 244
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKTLPVYYMKGESGPDHSKTFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|224044691|ref|XP_002193461.1| PREDICTED: double-stranded RNA-specific editase B2 [Taeniopygia
guttata]
Length = 744
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + I D++S
Sbjct: 181 AAELALKSFVQFPNACQAHFAMGNCISPSTDFTS 214
>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
Length = 230
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K QLQ Y Q K L LP+Y+ EGP H FK + I G +++ + + AE +AA
Sbjct: 157 KTQLQEYLQAKKLALPVYTILALEGPAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAA 216
Query: 65 KVALMSLSL 73
+ L L++
Sbjct: 217 EKILEELAI 225
>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
Length = 233
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK ++QE Q P Y + G H+ FV+ + + EV+ +SKK+AE AA
Sbjct: 163 YKTLMQEYTQASLATTPEYRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAA 222
Query: 143 KVAYMRLK 150
+VAY +L+
Sbjct: 223 RVAYQQLR 230
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1 MQHLYKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEA 59
M+H YK +Q YTQ P Y E GP H+ F ++ ++ + Y + KEA
Sbjct: 159 MRHDYKTLMQEYTQASLATTPEYRIVAEQGPDHSKVFVAQLLLNREVYGEGS-GRSKKEA 217
Query: 60 EHEAAKVALMSLSLDK 75
E EAA+VA L +K
Sbjct: 218 EQEAARVAYQQLRAEK 233
>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
Length = 1385
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAK 65
K QL + QK+ LPL +Y E +G H FK V ++G+ ES + T KE+E + AK
Sbjct: 10 KVQLNEWLQKRKLPLSIYHTEYKGSEHNKDFKSIVIVNGKEIES-DWKKTKKESEKDCAK 68
Query: 66 VALMSL 71
L L
Sbjct: 69 RILEFL 74
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
L E QK L +Y+T+ G H F S V V G+ K+KK++E AK
Sbjct: 13 LNEWLQKRKLPLSIYHTEYKGSEHNKDFKSIVIVNGKEIESDWKKTKKESEKDCAK 68
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 141
+YK+ LQ + Q+ + LP Y + G+ H+P F +TV V S + S K+A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 142 AKVAY 146
AK+AY
Sbjct: 61 AKLAY 65
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+YK+ LQ+ Q++ LP Y ++G H+ F VT++ ++ S + K+A+ EA
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 64 AKVALMSLSL 73
AK+A SL
Sbjct: 61 AKLAYDHFSL 70
>gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7]
gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7]
Length = 229
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE + + N ++ GE H F+ V+ G ++ KSKK+AEM AAK
Sbjct: 159 YKTRLQEFPELNNKTIEYINLEEVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAK 218
Query: 144 VAYMRL 149
A ++L
Sbjct: 219 NALLKL 224
>gi|344277900|ref|XP_003410735.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Loxodonta africana]
Length = 757
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 135 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 192
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + + D++S
Sbjct: 193 AAELALKSFVQFPNACQAHFAMGNSVSPATDFTS 226
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ H T KEAE +AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPL-GHGAGSTKKEAEQKAA 213
Query: 65 KVALMSLS 72
+ A SLS
Sbjct: 214 ETAWRSLS 221
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H F +TV V G +KK+AE AA+
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAE 214
Query: 144 VAYMRL 149
A+ L
Sbjct: 215 TAWRSL 220
>gi|398337618|ref|ZP_10522323.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 247
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK LPVY K +SG HA F +V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKVLPVYRMKGESGPDHAKVFQVSVRIRDKWEASGSGVSKKAAEQNAA 236
Query: 143 KVAYMRLK 150
K Y R++
Sbjct: 237 KELYNRIQ 244
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP HA F+ V I + +E+ + K AE A
Sbjct: 177 YKTQLQEYSQKHFKVLPVYRMKGESGPDHAKVFQVSVRIRDK-WEASGSGVSKKAAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
[Pongo abelii]
Length = 345
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 117
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D D++S
Sbjct: 118 AAELALRSFVQFPNACQAHLAMGGDPGPGTDFTS 151
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|453068807|ref|ZP_21972078.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|452764990|gb|EME23255.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
Length = 257
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +PVY +G H F +TV + G+ +SKK+AE AA
Sbjct: 173 WKTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAAS 232
Query: 144 VAYMRLKE 151
A+ + E
Sbjct: 233 SAWKTMSE 240
>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
Length = 259
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K+ LQ + ++LP+P Y+ ER GP HA RF+ V ++G E T K +AA
Sbjct: 180 KSALQEWAMGRSLPIPTYAVVERTGPDHAPRFRIAVQVEG--LEPGLGDGTSKRIAEQAA 237
Query: 65 KVALM 69
ALM
Sbjct: 238 ARALM 242
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 51 QFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGE 109
Q F + + E KV +++++ QD YK +LQE+ Q P Y + G
Sbjct: 138 QSFKVVSDFILELLKVDIINVAAGNHIQD----YKTMLQEVIQDMGNFRPEYEVIDEEGP 193
Query: 110 SHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRL 149
H TF+ V++ E SGQG+ SKK+AE AAKVA +L
Sbjct: 194 DHNKTFIVAVKMNEESLGSGQGS-SKKEAEQEAAKVALDKL 233
>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|386349919|ref|YP_006048167.1| RNAse III [Rhodospirillum rubrum F11]
gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
gi|346718355|gb|AEO48370.1| RNAse III [Rhodospirillum rubrum F11]
Length = 221
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 6 KNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYES 49
K LQ + Q + LPLP Y+ E R+GPPH F VT+ ES
Sbjct: 155 KTALQEWAQGRGLPLPTYAVEGRDGPPHKPMFTVSVTVKDNGSES 199
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K+ LQE +Q+ + +PVY ++ SG +H P F + V V GE+ SKK+++ AA+
Sbjct: 162 KSELQEFSQRIYHEMPVYELEEESGPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQ 221
Query: 144 VAYMRLKE 151
A +L++
Sbjct: 222 AALDKLEK 229
>gi|451944546|ref|YP_007465182.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
gi|451903933|gb|AGF72820.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
Length = 249
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQE + +PVY + +G H TF +TV V G++ +KK AE +A
Sbjct: 177 WKTTLQERLAELRLDMPVYASTSTGPEHDLTFTATVSVAGQLLGTGTGPNKKLAEQESAH 236
Query: 144 VAYMRLKE 151
AY L+E
Sbjct: 237 QAYRALRE 244
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 77 QQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
+ +D + +K +LQE +Q+E +P Y K+ G H +F V++ E+ ++KK
Sbjct: 156 ENEDLIDFKTILQEFSQREYKVIPSYEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKK 215
Query: 136 QAEMSAAKVAYMRL 149
AE SAA+ A +L
Sbjct: 216 SAEQSAARNACRKL 229
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 43/185 (23%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
YKN LQ + Q LP Y+ + S F +V +G Y+S T K AE AA
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTN----SGFIAEVNFEGVRYKSKIAHSTKKAAEQNAA 196
Query: 65 KVALMSLSL-----------DKFQ--------QDD----------------SVLYKNVLQ 89
+ AL +L L +KF+ ++D ++ YK+ LQ
Sbjct: 197 ESALQALGLVRDSPSETVVSEKFESVLKNTPAKNDFTGCSKDQLYLSSPAINISYKSYLQ 256
Query: 90 ELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
E + + P Y T H + V+ G+ +G+ A +KK +E AA+ A + L
Sbjct: 257 EHVVQRGWRGPSYMTTY----HQGGAQTVVQFCGKSLTGKPASTKKLSEQLAAREALVNL 312
Query: 150 KEPNP 154
+P
Sbjct: 313 GFSDP 317
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGES---HAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
+K++LQE QK P Y T Q + + FVS V G+ F+G +K AE
Sbjct: 20 FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQD 79
Query: 141 AAKVAYMRLKEPNPSQGPALVS--PDIQAQADYSSSSLQSNV 180
AAK A +++ L+S P Q A YS+ S+ +N
Sbjct: 80 AAKQALKNIQQ-------TLISSTPSSQNIATYSNPSIITNT 114
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 74/193 (38%), Gaps = 53/193 (27%)
Query: 3 HLYKNQLQSYTQKKNLPLPMY---SCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 59
H +K+ LQ Y QK + P Y C+ + F V GQ + + + K A
Sbjct: 18 HGFKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNF-TGGYCSKRKAA 76
Query: 60 EHEAAKVAL-----------------------------------MSLSLD-----KFQQD 79
E +AAK AL +S SL+ + Q
Sbjct: 77 EQDAAKQALKNIQQTLISSTPSSQNIATYSNPSIITNTNNSQANLSQSLESSFTPQHQTT 136
Query: 80 DSVLYKNVLQELAQKEAYALPVY--NTKQSGESHAPTFVSTVEVGGEVFSGQGAKS-KKQ 136
YKN+LQE AQ A LP Y +T SG F++ V G + + A S KK
Sbjct: 137 PIKSYKNILQEFAQGSAKLLPSYTVDTTNSG------FIAEVNFEGVRYKSKIAHSTKKA 190
Query: 137 AEMSAAKVAYMRL 149
AE +AA+ A L
Sbjct: 191 AEQNAAESALQAL 203
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE QK P Y K++G H TF V+V F ++KK+AE +AA
Sbjct: 176 YKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSFGPAKGRNKKEAEQNAA 235
Query: 143 KVAY 146
K+AY
Sbjct: 236 KLAY 239
>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
Length = 700
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 104 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 162
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 163 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 222
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 223 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 660
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 64 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 122
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 123 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 182
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 183 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
Length = 705
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 135 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 193
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 194 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 253
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 254 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 294
>gi|383420017|gb|AFH33222.1| interferon-induced, double-stranded RNA-activated protein kinase
isoform a [Macaca mulatta]
Length = 554
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
Y +L Y QK+ + L GPPH RF +V D +T+ ++
Sbjct: 9 FYMEELNKYRQKQGISLSYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
+ E+ V+ SL+ + S+ Y V+ +AQK+ + Y SG
Sbjct: 69 KLAVDILNKESEAVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVN-YEQCTSGVHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
F ++G + + SK++A+ AAK+A + + E + ++ S A D
Sbjct: 128 PEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETSVKPDSMSSGSFAATCDS 187
Query: 172 SSSSLQSN 179
S+ L +N
Sbjct: 188 QSNPLVNN 195
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K LQE+ Q++ + Y Q G +H FVS V + G+V +SKK+AE AA
Sbjct: 172 FKTQLQEMVQRDGNGILTYRILQEKGPAHHREFVSEVALNGQVLGVGTGRSKKEAEQRAA 231
Query: 143 KVAYMRLKE 151
+ A +LK+
Sbjct: 232 EQALSKLKQ 240
>gi|134105965|gb|ABO60959.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
mulatta]
Length = 554
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
Y +L Y QK+ + L GPPH RF +V D +T+ ++
Sbjct: 9 FYMEELNKYRQKQGISLSYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
+ E+ V+ SL+ + S+ Y V+ +AQK+ + Y SG
Sbjct: 69 KLAVDILNKESEAVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVN-YEQCTSGVHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
F ++G + + SK++A+ AAK+A + + E + ++ S A D
Sbjct: 128 PEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETSVKPDSMSSGSFAATCDS 187
Query: 172 SSSSLQSN 179
S+ L +N
Sbjct: 188 QSNPLVNN 195
>gi|406982720|gb|EKE04003.1| hypothetical protein ACD_20C00120G0004 [uncultured bacterium]
Length = 241
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+K LQ YTQ L LP+Y + EGPPH F+ V I+ +T + KEA+ ++
Sbjct: 167 FKAMLQEYTQANELELPVYDVVKEEGPPHNKVFEVAVVINDKTLGIGS-GKSKKEAQQKS 225
Query: 64 AKVALMSLSL 73
A+ A++ L L
Sbjct: 226 AEQAVIKLGL 235
>gi|397515135|ref|XP_003827815.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2 [Pan paniscus]
Length = 739
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
Length = 250
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ--DDSVL--YKNVLQELAQKEAY 97
I G + H F EAA+ +++L +K DS+ +K +LQE A +
Sbjct: 139 IFGAIFLEHGF---------EAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKL 189
Query: 98 ALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
+P Y +G H F +T + G+V +GQG +KK AE AAK A L+E N ++
Sbjct: 190 PMPEYEASFTGPDHDRFFTATAIIDGKVVGTGQG-HNKKAAEQLAAKQAVTVLREQNIAR 248
>gi|145301625|ref|NP_001077417.1| interferon-induced, double-stranded RNA-activated protein kinase
[Macaca mulatta]
gi|134105963|gb|ABO60958.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
mulatta]
Length = 554
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
Y +L Y QK+ + L GPPH RF +V D +T+ ++
Sbjct: 9 FYMEELNKYRQKQGISLSYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
+ E+ V+ SL+ + S+ Y V+ +AQK+ + Y SG
Sbjct: 69 KLAVDILNKESEAVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVN-YEQCTSGVHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
F ++G + + SK++A+ AAK+A + + E + ++ S A D
Sbjct: 128 PEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETSVKPDSMSSGSFAATCDS 187
Query: 172 SSSSLQSN 179
S+ L +N
Sbjct: 188 QSNPLVNN 195
>gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa]
gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa]
Length = 537
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y +L Y QK ++ L + GP H RF +V ID + + + + KEA++ A
Sbjct: 9 FYIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEG-RSKKEAKNAA 67
Query: 64 AKVALMSLSLDKFQQDDSVL-------------YKNVLQELAQKEAYALPVYNTKQSGES 110
K+A ++ + S L Y + ++QK+ ++ Y + GE
Sbjct: 68 VKLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVN-YEPCEPGED 126
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
F ++G +V+ +K++A+ AAK AY +L+ N
Sbjct: 127 GPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKLQSEN 169
>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 237
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ P Y T +SG H TF ++E+ + KSKK+AE +AA
Sbjct: 165 YKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAA 224
Query: 143 K 143
+
Sbjct: 225 R 225
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQELA + +P Y + G H F + VG E +SKK+AE AA
Sbjct: 175 WKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQAAH 234
Query: 144 VAYMRL 149
A+ L
Sbjct: 235 TAWTEL 240
>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
Length = 229
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 84 YKNVLQELAQKEA-YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL QK++ + + K G H TF T+ + G++ S K+KK+AE AA
Sbjct: 154 YKTALQELIQKQSDHVIEYVLDKADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAA 213
Query: 143 KVA-YMRLK-EPNPSQ 156
K + + RL+ E +PS+
Sbjct: 214 KKSLHARLRHEKSPSE 229
>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
Length = 227
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 58 EAEHEAAKVALMSLSLDKFQ--QDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPT 114
+A E A+ +++L D+ + D+ K LQE AQ A P Y +SG HAP
Sbjct: 130 DAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVARSGPDHAPE 189
Query: 115 F--VSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
F V+ +E G E S G SK+QAE +AAK
Sbjct: 190 FTIVARLETGEEAASKAG--SKRQAEQAAAK 218
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275
>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
Length = 240
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL+ P Y G HA TF ++ VGGEV +KK AE AA
Sbjct: 159 WKTSLQELSASLGLGAPYYEVTGEGPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAAS 218
Query: 144 VAYMRL 149
A+ L
Sbjct: 219 AAWTAL 224
>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 634
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 64 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 122
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 123 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 182
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 183 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 223
>gi|395509391|ref|XP_003758981.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase, partial [Sarcophilus harrisii]
Length = 497
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 62
L+ +L +Y +KN+ + GPPH F K I + + + + KEA++
Sbjct: 8 RLFTYELNNYCLRKNMQVSYEEISVTGPPHNMEFTFKAVIGDREFPEGK-GKSKKEAKNV 66
Query: 63 AAKVALMSLSLDKF--------QQDDSVL---------YKNVLQELAQKEAYALPVYNTK 105
AA++AL+ L + Q+ SVL Y +L + QK L
Sbjct: 67 AARMALLILEKEDTSSFMSPQPSQNSSVLESKTPPSMDYIALLNQNVQKMRLTLDFIRQP 126
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
SG S +F +VG +S S+++A+ +AAK+A +++ + SQ
Sbjct: 127 PSGFS---SFSYICKVGKTSYSPGSGSSRREAKQAAAKIACQKMQLGDISQ 174
>gi|392428570|ref|YP_006469581.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|419775910|ref|ZP_14301835.1| ribonuclease III [Streptococcus intermedius SK54]
gi|423070522|ref|ZP_17059298.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|424787591|ref|ZP_18214355.1| ribonuclease III [Streptococcus intermedius BA1]
gi|355365608|gb|EHG13330.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|383846458|gb|EID83855.1| ribonuclease III [Streptococcus intermedius SK54]
gi|391757716|dbj|BAM23333.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|422113345|gb|EKU17083.1| ribonuclease III [Streptococcus intermedius BA1]
Length = 232
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 41 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD---SVLYKNVLQELAQKEAY 97
TI G +E+ L + + EA + L + + K + D + YK LQEL Q
Sbjct: 116 TILGDLFEAF-LGALLLDKDVEAVRTFLYQIMIPKVEAGDFEQVIDYKTKLQELLQVNGD 174
Query: 98 ALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
+Y ++G +HA F +V V G V +SKK AE AAK AY
Sbjct: 175 VEILYQVVSETGPAHAKEFAVSVSVDGRVVGDGKGRSKKLAEQEAAKNAY 224
>gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
Length = 280
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 82 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 141
L KN L +L + L QSG HAP F+ +VEV G+ F G+G +KK+A++ A
Sbjct: 36 ALPKNALMQLNELRP-GLQFKFVSQSGPVHAPEFIMSVEVNGQTFEGRGG-TKKKAKLHA 93
Query: 142 AKVA 145
A+ A
Sbjct: 94 AEQA 97
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQ+ +QKE P Y +Q G H +F V + G + KSKK+AE SAA
Sbjct: 165 YKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAA 224
Query: 143 KVA 145
K A
Sbjct: 225 KEA 227
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK+ LQ Y+QK+ P Y ++ GP H F+ V+I G Y + + KEAE A
Sbjct: 165 YKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFEIVVSIKGSEY-GRGWGKSKKEAEQSA 223
Query: 64 AKVALMSLSLD 74
AK AL L+ D
Sbjct: 224 AKEALKILTPD 234
>gi|426363823|ref|XP_004049032.1| PREDICTED: double-stranded RNA-specific editase B2 [Gorilla gorilla
gorilla]
Length = 739
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|407782700|ref|ZP_11129910.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
gi|407205358|gb|EKE75331.1| dsRNA-specific ribonuclease [Oceanibaculum indicum P24]
Length = 233
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 6 KNQLQSYTQKKNLPLPMY-SCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K LQ + Q + LPLP Y REGP H F +VT+ GQ + P+ + AE +AA
Sbjct: 162 KTGLQEWAQGRGLPLPSYREVGREGPAHQPVFTVEVTVKGQE-PAEGTGPSKRVAEQQAA 220
Query: 65 KVAL 68
+ L
Sbjct: 221 QALL 224
>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
Length = 873
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 87 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 144
VL EL K + P Y K SG SH+ F+ +VE+ G+ ++ Q +KK+A+++AAK+
Sbjct: 803 VLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKL 862
Query: 145 AYMRL 149
L
Sbjct: 863 CLRAL 867
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L T K P Y+ + + GP H+ F V I+GQTY Q KEA+ AAK+
Sbjct: 804 LNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKLC 863
Query: 68 LMSLSL 73
L +L +
Sbjct: 864 LRALGI 869
>gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus
trivirgatus]
Length = 549
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-ESHQFFPTLKEAEHE 62
+ +L Y QK+ + L GPPH RF +V IDG+ + E+ +
Sbjct: 9 FFMEELNKYRQKQGVVLRYEELPNSGPPHDRRFTFQVIIDGREFPEAEGKSKKEAKNAAA 68
Query: 63 AAKVALMS--------LSL---DKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 111
V +++ LSL D ++ Y ++ AQK + Y SG +
Sbjct: 69 KVAVEILNKENKAVSPLSLTPTDSAERSSIGNYIGLINRFAQKNRLTVN-YEQCASGVNG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL--------KEPNPSQGPALVSP 163
F +VG + + +K++A+ AAK+AY+++ K + S G
Sbjct: 128 PAGFHYKCKVGQKEYGIGTGSTKQEAKQMAAKLAYLQIHKSEETSVKADSISSGAFTPVC 187
Query: 164 DIQAQADYSSSSL 176
DIQ + ++S+L
Sbjct: 188 DIQNNSSVTTSTL 200
>gi|208690887|gb|ACI31219.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
mulatta]
Length = 554
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
Y +L Y QK+ + L GPPH RF +V D +T+ ++
Sbjct: 9 FYMEELNKYRQKQGISLSYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
+ E+ V+ SL+ + S+ Y V+ +AQK+ + Y SG
Sbjct: 69 KLAVDILNKESEAVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTVN-YEQCTSGVHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADY 171
F ++G + + SK++A+ AAK+A + + E + ++ S A D
Sbjct: 128 PEGFHYKCKIGDKEYGIGTGSSKQEAKQLAAKLALLEISEETSVKPDSMSSGSFAATCDS 187
Query: 172 SSSSLQSN 179
S+ L +N
Sbjct: 188 QSNPLVNN 195
>gi|383858469|ref|XP_003704724.1| PREDICTED: double-stranded RNA-specific editase Adar-like
[Megachile rotundata]
Length = 621
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L EL Y + +Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 41 LNELKTGAVYKV----VEQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 95
Query: 148 RLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPK 203
+ + P Q P I + D++ S+VT +H + L P S K
Sbjct: 96 NIIQFRNTPEVHQAINTCQPSIPLEPDFT-----SDVTERDNHLVNAFKTLTQEPKSTSK 150
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 45/147 (30%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------------- 71
E+ GP HA F V IDGQTYE T K A+H AA++AL ++
Sbjct: 54 EQTGPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELALRNIIQFRNTPEVHQAIN 111
Query: 72 ------------SLDKFQQDDSVL--YKNVLQE------LAQK-------EAYALPVYN- 103
+ D ++D+ ++ +K + QE +K E Y VY
Sbjct: 112 TCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKSTSKFLEKGPVALINELYPGVVYKC 171
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+GES+A F +V + GE F G G
Sbjct: 172 VSDNGESYA-KFTISVTIDGETFEGTG 197
>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
Length = 248
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE QK+ A P Y+ + +G H F +V++G V+ K+KK AE +AA
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAA 238
Query: 143 KVA 145
VA
Sbjct: 239 GVA 241
>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
Length = 674
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 36/161 (22%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE +EGP H +F+ V + QT+ P+ K A+ AA+ A+ +L
Sbjct: 104 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSA-PSKKVAKQMAAEEAMKALQEEAASS 162
Query: 72 -----------SLD------KFQQ-DDSVLYKNV-----LQELAQKEAYALPVYNTKQSG 108
SLD K ++ + V Y N L E A+ +A QSG
Sbjct: 163 ADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG 222
Query: 109 ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
H P FV +VGG F A SKKQ + AA A L
Sbjct: 223 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVL 263
>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
Length = 871
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 87 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 144
VL EL K + P Y ++ +G H+ TF+ +VE+ G+ ++ +G +KK+A+++AAK+
Sbjct: 801 VLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKL 860
Query: 145 AYMRL 149
L
Sbjct: 861 CLCAL 865
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L T K P Y+ E GPPH+ F V I+GQTY + KEA+ AAK+
Sbjct: 802 LNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKLC 861
Query: 68 LMSLSL 73
L +L +
Sbjct: 862 LCALGI 867
>gi|402879494|ref|XP_003903372.1| PREDICTED: double-stranded RNA-specific editase B2 [Papio anubis]
Length = 724
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 108 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 165
Query: 141 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
AA++A + PN Q GP + QAD+ + Q
Sbjct: 166 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 210
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINKL 226
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H +F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
Length = 244
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 36 FKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKE 95
F + +DG ++ F L E + LM F + D YK++LQE QK+
Sbjct: 136 FVGALYLDGGFLKTLDFVIELFEVH-----IRLM------FNRGDFKDYKSLLQEYVQKK 184
Query: 96 AYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 145
P Y K+ G H F + V + S KSKK+AEM AA++A
Sbjct: 185 YKISPTYKLAKELGPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMA 235
>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|189043370|sp|A0LGM1.1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
Length = 242
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 75 KFQQDDSVL------YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS 127
+F++ + VL YK LQEL Q PVY ++ G H TF V + G+V +
Sbjct: 153 RFEKREHVLKALDKDYKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLA 212
Query: 128 GQGAKSKKQAEMSAAKVA 145
G KSKK A+ +AA+ A
Sbjct: 213 GGSGKSKKDAQQAAAEKA 230
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ TQ + P+Y +R EGP H F V ++GQ + K+A+ A
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGS-GKSKKDAQQAA 226
Query: 64 AKVALMSLSLDKFQQD 79
A+ AL ++ D + D
Sbjct: 227 AEKALQIIAADSWSLD 242
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K LQEL+ + Y P Y +G H F + V GE GQG ++KK+AE AA
Sbjct: 172 WKTSLQELSAEGGYGPPHYQITSTGPDHNKEFTAVAVVAGESL-GQGTGRTKKEAEQKAA 230
Query: 143 KVAYMRLKE 151
+A+ L E
Sbjct: 231 ALAWQALTE 239
>gi|332296458|ref|YP_004438381.1| ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
Length = 228
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVF 126
LM++ ++++++D K VLQEL Q LP Y G SH+P F + + + F
Sbjct: 141 LMNIKIEEYEEDS----KTVLQELTQSLFGVLPEYKVIDVRGPSHSPIFEVQLSIDNKFF 196
Query: 127 SGQGAKSKKQAEMSAAKVAYMRLK 150
SKKQA+ AAK A L+
Sbjct: 197 YTATGSSKKQAQSEAAKKALNDLR 220
>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
gi|33112436|sp|Q9NS39.1|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
AA++A + PN Q GP + QAD+ + Q
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|350579626|ref|XP_003122205.3| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus
scrofa]
Length = 619
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 29 GPPHASRFKCKVTIDGQTYESHQFFPTLKEAE-HEAAKVALMSLSLDKFQQDDSVLYKNV 87
GP HA F V +DG TYE+ P+ K A+ H A KV L + KN
Sbjct: 411 GPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHVAVKVRTQGPIL-------TASGKNP 461
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG 130
+ EL +K L ++G SH FV VEV G+ F G G
Sbjct: 462 VMELNEKR-RGLKYELISETGGSHDKRFVMEVEVDGQKFRGAG 503
>gi|431892377|gb|ELK02817.1| Double-stranded RNA-specific adenosine deaminase [Pteropus alecto]
Length = 1039
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 40/165 (24%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL------- 71
SCE REGP H +F+ V + T+ + P+ K A+ AA+ A+ +L
Sbjct: 468 SCEFRLISREGPAHDPKFQYCVAMGTHTFPTASA-PSKKAAKQMAAEEAMKALHGEATDL 526
Query: 72 ----------SLDKFQQDDS------------VLYKNV-----LQELAQKEAYALPVYNT 104
S + F +S V Y N L E A+ +A
Sbjct: 527 SPSENQPGSASSEPFDSLESAVPSKVRRVGELVRYLNANPVGGLLEYARSHGFAAEFKLV 586
Query: 105 KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
QSG H P FV +VGG F A SKKQ + AA A L
Sbjct: 587 DQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 631
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQEL Q+ Y+ T Q G H TFV+ V++ G V GQG SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFVTEVKING-VTQGQGKGHSKKEAEQNA 225
Query: 142 AKVAYMRLK 150
AK A LK
Sbjct: 226 AKDALNNLK 234
>gi|407775064|ref|ZP_11122360.1| RNAse III [Thalassospira profundimaris WP0211]
gi|407282012|gb|EKF07572.1| RNAse III [Thalassospira profundimaris WP0211]
Length = 227
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHEA 63
K QLQ + Q + PLP Y REGP HA F ++T DG + + + +EAE A
Sbjct: 159 KTQLQEWLQGRGKPLPKYEMVGREGPAHAPLFTIELTTGDGDSVSAEG--KSKREAEQLA 216
Query: 64 AKVALMSLS 72
AK+ L LS
Sbjct: 217 AKLMLDKLS 225
>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
Length = 237
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 58 EAEHEAAKVAL---MSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAP 113
EA E K L + +D F+ V YK +LQE K + Y SG SH
Sbjct: 137 EAGLETVKTFLSNTLFTEVDSFEYLSFVDYKTILQEYVSKIKLGVIEYTVLDSSGPSHLK 196
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
TF S V + G+ + AK+KK++E +AK A +L
Sbjct: 197 TFTSAVIIDGKQYGSGTAKTKKESEQLSAKAALEKL 232
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y K L + Y+ + GP H F V IDG+ Y S T KE+E +
Sbjct: 166 YKTILQEYVSKIKLGVIEYTVLDSSGPSHLKTFTSAVIIDGKQYGSGT-AKTKKESEQLS 224
Query: 64 AKVALMSL 71
AK AL L
Sbjct: 225 AKAALEKL 232
>gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus]
gi|117616338|gb|ABK42187.1| Prkr [synthetic construct]
gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus
musculus]
Length = 515
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y Q + + GPPH RF +V ID + FP K +
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE------FPEAKGKSKQE 61
Query: 64 AKVALMSLSLDKFQQDDSV--------------LYKNVLQELAQKEAYALPVYNTKQSGE 109
A+ A L++D ++ V Y ++ AQK+ ++ Y +
Sbjct: 62 ARNAAAKLAVDILDNENKVDCHTSASEQGLPYGNYIGLVNSFAQKKKLSVN-YEQCEPNS 120
Query: 110 SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQG 157
F+ ++G ++ +K++A+ AAK AY + LK P + G
Sbjct: 121 ELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL------YKNVLQELAQKE 95
I G Y H F E A+ ++ L K D++V+ +K LQEL +
Sbjct: 139 ILGAIYRQHGF---------EVARGVVLKLFAAKI--DNAVVSGRHMDWKTTLQELCAEL 187
Query: 96 AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNP 154
A+PVY+ +G H TF + V G +KK AE AA+ A L+E P
Sbjct: 188 KAAMPVYSATSTGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQALRETPLL 247
Query: 155 SQGPA 159
QG A
Sbjct: 248 VQGTA 252
>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
Length = 243
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 81 SVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAE 138
SV K+ LQE Q + A P Y +SG +H PTF + V V G +V GQG SKK AE
Sbjct: 158 SVSPKSRLQEAVQAQGKATPEYKLIGESGPAHTPTFTAVVFVDGLKVGRGQG-PSKKAAE 216
Query: 139 MSAAKVAYMRL 149
AA+ A +RL
Sbjct: 217 SEAAQDALVRL 227
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y +SG H TF + V G+ +SKK+AE AA+
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAE 241
Query: 144 VAYMRLK 150
A+ +K
Sbjct: 242 SAWRAIK 248
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQ+ AQ+E P Y+ + G H+ F + VGG+ + ++KK+AE AA
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWGRNKKEAEQRAA 256
Query: 143 KVAYMRLK 150
A +K
Sbjct: 257 NNALAEIK 264
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQE P Y + G H F +TV V G ++KK AEM AA+
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 144 VAYMRLKE 151
A++ L++
Sbjct: 236 NAWVSLRD 243
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 139 MSAAKVAYMRL 149
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|81388984|sp|Q67PF5.1|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Q++ P Y EGP H RF+ V +G+ + + KEAE EA
Sbjct: 165 YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGT-GWGRNKKEAEQEA 223
Query: 64 AKVALM 69
A+ ALM
Sbjct: 224 ARQALM 229
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQELA ++ P Y + G H F + V + EV +SKK+AE AA+
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQKAAE 232
Query: 144 VAYMRL 149
A+ L
Sbjct: 233 QAWKEL 238
>gi|383864907|ref|XP_003707919.1| PREDICTED: uncharacterized protein LOC100879799 [Megachile
rotundata]
Length = 914
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y K+ L P+Y C GP H F KV ++G Y+ P K+A+ EAA++
Sbjct: 837 LGEYCSKRKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQIC 896
Query: 68 LMSLSL 73
L +L L
Sbjct: 897 LQTLGL 902
>gi|345793477|ref|XP_544281.3| PREDICTED: double-stranded RNA-specific editase B2 [Canis lupus
familiaris]
Length = 922
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 170 SVAPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 227
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + + D++S
Sbjct: 228 AAELALRSFVQFPNACQAQLAMGGGVGPSPDFTS 261
>gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase, partial [Xenopus laevis]
Length = 1124
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 28/148 (18%)
Query: 29 GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL-MSLSLDKFQQDDSVLYK-- 85
GP H RFK + IDG+ + + + K A+ +AA +AL + L ++ ++ V+ +
Sbjct: 453 GPSHDPRFKIQAVIDGRHFPVAEA-SSKKTAKKDAASLALRILLREEQGGTEEEVMIEYM 511
Query: 86 ------------------------NVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV 121
+VL E QK +Q G H P F TV++
Sbjct: 512 QVPEVNEEQKLPAQPSFPCNKNPISVLMEHGQKSGSMCEFQLVQQEGPPHDPKFTYTVKI 571
Query: 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
G + F A SKK A+ AA+ A L
Sbjct: 572 GNQTFPPVVANSKKMAKQLAAEAAVREL 599
>gi|351704376|gb|EHB07295.1| Double-stranded RNA-specific adenosine deaminase [Heterocephalus
glaber]
Length = 932
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 38/163 (23%)
Query: 24 SCE-----REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ 78
SCE +EGP H +F+ V + QT+ + P+ K A+ AA+ A+ +L +
Sbjct: 334 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKAAKQMAAEEAMKALHEEATTA 392
Query: 79 DDS---------------------------VLYKNV-----LQELAQKEAYALPVYNTKQ 106
D V Y N L + A+ +A Q
Sbjct: 393 ADDQPGGENLESGETLESGVPSSIRRISELVRYLNTNPVGGLLDYARSHGFAAEFKLVDQ 452
Query: 107 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
SG H P FV +VGG F A SKKQ + AA A L
Sbjct: 453 SGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 495
>gi|357607145|gb|EHJ65367.1| MLE protein [Danaus plexippus]
Length = 189
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K+ L S+ KK+L +P + GP H RF C+V ++G TY T KEA+ A+
Sbjct: 3 FKSYLFSWAAKKSL-IPTFDIRATGPKHRQRFLCEVRVEGHTYVGAGNSVTKKEAQKNAS 61
Query: 65 K 65
+
Sbjct: 62 R 62
>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL+ + P+Y+ G H F + V + V+ +KK AE AA+
Sbjct: 171 WKTSLQELSAELGLGAPLYDVDGVGPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAAR 230
Query: 144 VAYMRLKE 151
AY L+E
Sbjct: 231 TAYAALRE 238
>gi|428775122|ref|YP_007166909.1| RNAse III [Halothece sp. PCC 7418]
gi|428689401|gb|AFZ42695.1| RNAse III [Halothece sp. PCC 7418]
Length = 228
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE A +P Y+ +Q +G HA F V +G EV+ +SKK AE AA
Sbjct: 155 YKGQLQEWALAYCGLIPRYSIRQETGADHAKEFTVEVRIGSEVYGVGVGESKKTAEKRAA 214
Query: 143 KVA 145
K A
Sbjct: 215 KAA 217
>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
cuniculus]
Length = 734
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 112 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 169
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 170 AAELALKSFVQFPNACQAHLAMGSGTSPCTDFTS 203
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2 [Callithrix
jacchus]
Length = 998
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 60 EHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 119
E ++ + L K SV KN L +L + L Q+G HAP F V
Sbjct: 360 EGNGGRLCKLQLVWKKLSW--SVAPKNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAV 416
Query: 120 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQS 178
EV G F G G +KK+A+M AA++A + PN Q + D++S Q+
Sbjct: 417 EVNGLTFEGTG-PTKKKAKMRAAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSD--QA 473
Query: 179 NVTADLHHNIQ 189
+ L H +
Sbjct: 474 DFPDTLFHEFE 484
>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
gi|189043371|sp|A8F397.1|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
Length = 238
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ TQ + LP Y E GP H +F ++ + G+ + P++KEAE EA
Sbjct: 169 YKTSLQEITQARYRKLPEYVLVNEKGPSHMKKFTVELRLSGKLIAVGEG-PSIKEAEKEA 227
Query: 64 AKVALMSLSLD 74
A+ A+ L D
Sbjct: 228 ARRAIEKLKGD 238
>gi|451337399|ref|ZP_21907944.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
gi|449419994|gb|EMD25505.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
Length = 248
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL +P Y + +G H F +TV VGG +KK+AE +A+
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKSAE 229
Query: 144 VAYMRL 149
A+ +L
Sbjct: 230 TAWRQL 235
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ + T KEAE ++A
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGREL-GYGSGTTKKEAEQKSA 228
Query: 65 KVALMSLS 72
+ A LS
Sbjct: 229 ETAWRQLS 236
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 139 MSAAKVAYMRL 149
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
++V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 156 ETVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAE 215
Query: 139 MSAAKVAYMRL 149
SAA+ A +L
Sbjct: 216 QSAAQFAINQL 226
>gi|406945288|gb|EKD76827.1| hypothetical protein ACD_42C00585G0003 [uncultured bacterium]
Length = 221
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRF--KCKVTIDGQTYESHQFFPTLKEAEHEA 63
K QLQ + Q K +PLP Y+C+ G H F CKVT G ++ + ++AE A
Sbjct: 153 KTQLQEWLQAKKMPLPTYACKILGKAHEQTFVVTCKVT--GMPMQTEGKSTSRRKAEQIA 210
Query: 64 AKVALMSLS 72
AK L LS
Sbjct: 211 AKYFLEKLS 219
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAK 143
K LQE Q + LP Y K G++H TFV T +V G +G + S+++AE AAK
Sbjct: 153 KTQLQEWLQAKKMPLPTYACKILGKAHEQTFVVTCKVTGMPMQTEGKSTSRRKAEQIAAK 212
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL E +P Y + G H TF + VGG + +SKK+AE AA+
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 143 KVAYMRLK 150
++A +LK
Sbjct: 234 QMALQKLK 241
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+K+QLQ Q+ + + YS E +GP H F +V+++GQ + KEAE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 64 AKVALMSL 71
A++AL L
Sbjct: 233 AQMALQKL 240
>gi|334329987|ref|XP_001377363.2| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Monodelphis domestica]
Length = 313
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 9 LQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y K N +P+Y ER +G + F +VTI + K A+H+AA+ A
Sbjct: 39 LHEYGMKTN-NVPVYEFERADGHANTPSFTFRVTIGDIICTGEG--SSKKMAKHKAAEAA 95
Query: 68 LMSLSL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYNTKQ-SGESH 111
+ L D D S KN LQELA + + LP Y Q G +H
Sbjct: 96 IGHLKANASLCFAVPDPTAPDPSKQPKNQANPIGSLQELAIQHGWRLPEYTLSQEGGPAH 155
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVS 162
F + + + +G+GA SKKQA+ +AA+ + +E +P +L +
Sbjct: 156 KKEFTTICRLESFIETGKGA-SKKQAKRNAAEKFLAKFREFSPDNNVSLAN 205
>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
(Silurana) tropicalis]
Length = 731
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPALVSPD 164
Q+G HAP F VEV G F G G +KK+A+M AA++A + PN Q +
Sbjct: 133 QTGPVHAPVFSVAVEVNGLTFEGTGP-TKKKAKMRAAELALKSFVQFPNACQAHFAMGNC 191
Query: 165 IQAQADYSS 173
I D++S
Sbjct: 192 ISPSTDFTS 200
>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
gi|123074286|sp|Q1D5X9.1|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAA 232
Query: 143 KVAYMRLKE 151
+ +L+E
Sbjct: 233 QATLEKLRE 241
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181]
gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181]
Length = 243
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K+ LQ + Q K + +P Y+ E EG PHA F+ K I E P+ K AE AA
Sbjct: 171 KSLLQEFLQGKKIAIPEYTVIEIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAA 230
Query: 65 KVALMSLS 72
+AL+ L
Sbjct: 231 NLALIYLG 238
>gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase
[Mus musculus]
gi|2507204|sp|Q03963.2|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated
protein kinase; AltName: Full=Eukaryotic translation
initiation factor 2-alpha kinase 2; Short=eIF-2A protein
kinase 2; AltName: Full=Interferon-inducible
RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
protein kinase; AltName: Full=Protein kinase
RNA-activated; Short=PKR; AltName:
Full=Serine/threonine-protein kinase TIK; AltName:
Full=Tyrosine-protein kinase EIF2AK2; AltName: Full=p68
kinase
gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus]
gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus]
Length = 515
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y Q + + GPPH RF +V ID + FP K +
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE------FPEAKGRSKQE 61
Query: 64 AKVALMSLSLDKFQQDDSV--------------LYKNVLQELAQKEAYALPVYNTKQSGE 109
A+ A L++D ++ V Y ++ AQK+ ++ Y +
Sbjct: 62 ARNAAAKLAVDILDNENKVDCHTSASEQGLFVGNYIGLVNSFAQKKKLSVN-YEQCEPNS 120
Query: 110 SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQG 157
F+ ++G ++ +K++A+ AAK AY + LK P + G
Sbjct: 121 ELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 143 KVAYMRLKE 151
++A +LK+
Sbjct: 226 QMALAKLKQ 234
>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
Length = 845
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 87 VLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 144
VL EL K + P Y +Q +G +H TF+ +VE+ G+ ++ G SKK+A+++AAK+
Sbjct: 775 VLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNSKKEAKLNAAKL 834
Query: 145 AYMRL 149
L
Sbjct: 835 CLQAL 839
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV 101
+ G TY +H T +E H L L D +K LQEL +P
Sbjct: 133 VIGATYLAHGI-ETARELVHRLFDGLLAEAPLRGAGLD----WKTSLQELTASAGLGVPE 187
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
Y + +G H F + V VGG +KK+AE AA+ A+ L E
Sbjct: 188 YKVEDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQKAAEFAWRELTE 237
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ T L +P Y E GP H F V + G+ H T KEAE +AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSAVVFVGGRDL-GHGEGTTKKEAEQKAA 228
Query: 65 KVALMSLS 72
+ A L+
Sbjct: 229 EFAWRELT 236
>gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B]
Length = 263
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 39 KVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----DDSVLYKNVLQELAQK 94
K+++ T E+ F + +EAAK ++ L Q S YK LQE++QK
Sbjct: 127 KLSLLANTLEA-IFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQK 185
Query: 95 EAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
+LP Y +SG H FV V + G+ K+KK A+ +AA +A L P
Sbjct: 186 LFSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLGNPK 245
Query: 154 PSQGPA 159
+ A
Sbjct: 246 SIESSA 251
>gi|456875951|gb|EMF91131.1| ribonuclease III [Leptospira santarosai str. ST188]
Length = 248
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 142 AKVAYMRLKE 151
AK + R+++
Sbjct: 236 AKELFNRIRK 245
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQE Q++ + Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 159 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 218
Query: 143 KVAYMRLKE 151
++A +LK+
Sbjct: 219 QMALAKLKQ 227
>gi|343525890|ref|ZP_08762843.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|423068319|ref|ZP_17057107.1| ribonuclease 3 [Streptococcus intermedius F0395]
gi|343395300|gb|EGV07841.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|355367210|gb|EHG14923.1| ribonuclease 3 [Streptococcus intermedius F0395]
Length = 232
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 41 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD---SVLYKNVLQELAQKEAY 97
TI G +E+ L + + EA K L + + K + D + YK LQEL Q
Sbjct: 116 TILGDLFEAF-LGALLLDKDVEAVKKFLYQIMIPKVEAGDFEQVIDYKTKLQELLQVNGD 174
Query: 98 ALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAY 146
VY +SG +HA F +V V G V GQG +SKK AE AAK A+
Sbjct: 175 VDIVYQVISESGPAHAKEFDVSVSVDGRVV-GQGQGRSKKLAEQEAAKNAF 224
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQEL+++ P Y SG H P + V VGG +SKK AE AA+
Sbjct: 233 KTALQELSRRLGLGEPSYRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAAR 292
Query: 144 VAYMRLKE 151
+A L+E
Sbjct: 293 IALADLEE 300
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
Length = 241
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
K++LQE Q++ P Y SG +H PTF + V V G V G+G SKK+AE SAA
Sbjct: 162 KSILQERVQEDHGEPPCYKLVGMSGPAHEPTFTAVVLVDG-VRCGRGTGSSKKEAEASAA 220
Query: 143 KVAYMRL 149
+ A R+
Sbjct: 221 RDALERM 227
>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
Length = 245
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K +Q ++ +LP+P Y GP H F + +DG+ Q T KEAEH+AA
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLKLDGKERTRGQ-GRTKKEAEHQAA 234
Query: 65 KVALMSLS 72
+ + LS
Sbjct: 235 RAMVEELS 242
>gi|410449758|ref|ZP_11303811.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|422005221|ref|ZP_16352416.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
gi|410016515|gb|EKO78594.1| ribonuclease III [Leptospira sp. Fiocruz LV3954]
gi|417256076|gb|EKT85516.1| ribonuclease III [Leptospira santarosai serovar Shermani str. LT
821]
Length = 248
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 235
Query: 142 AKVAYMRLKE 151
AK + R+++
Sbjct: 236 AKELFNRIRK 245
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|335049107|ref|ZP_08542118.1| ribonuclease III [Megasphaera sp. UPII 199-6]
gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|333764552|gb|EGL41946.1| ribonuclease III [Megasphaera sp. UPII 199-6]
Length = 236
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK + QE Q++ Y+ K+SG H TF V G+V KSKK AE AA
Sbjct: 167 YKTLFQEYIQRDGEHHITYSLCKESGPDHDKTFTMQVAADGKVLGEGCGKSKKMAEQHAA 226
Query: 143 KVAYMRL 149
+ A +RL
Sbjct: 227 RQALLRL 233
>gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Doryteuthis
opalescens]
Length = 786
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAPTF VEV GEVF G G +KK+A++ AA
Sbjct: 164 LPKNALMQLNEIKP-GLEFQLMGQTGPVHAPTFNMKVEVNGEVFEGAGP-TKKKAKLQAA 221
Query: 143 KVA 145
+ A
Sbjct: 222 EKA 224
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYA-LPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQE+ Q+ L ++ G +H FVS V + GE+ KSKK+AE AA
Sbjct: 176 YKSQLQEIVQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGEILGTGVGKSKKEAEQKAA 235
Query: 143 KVAYMRLKE 151
K A LK+
Sbjct: 236 KEALDELKK 244
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 157 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 216
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 217 SAAQFAINQL 226
>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
Length = 833
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 87 VLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKV 144
VL EL K + P Y + SG SH+ F+ +VE+ G+ ++ Q +KK+A+M+AAK+
Sbjct: 763 VLNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKL 822
Query: 145 AYMRL 149
L
Sbjct: 823 CLRAL 827
>gi|350567556|ref|ZP_08935966.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
gi|348662627|gb|EGY79284.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
Length = 259
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 50 HQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGE 109
H F P + EA+ A +K VLQE ++ + P Y+ SG
Sbjct: 169 HLFDPLVDEADRSGAGTD----------------WKTVLQEYCAEQGFEAPRYDIVGSGP 212
Query: 110 SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153
H + + EV G++ + +KK+AE AA++A L P
Sbjct: 213 DHNRRYCARAEVDGKLHAAYTGHNKKEAEQGAAQLAVAALIPPR 256
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ Y ++ P Y GP H R+ + +DG+ + ++ KEAE AA
Sbjct: 187 WKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGKLHAAYTGHNK-KEAEQGAA 245
Query: 65 KVALMSL 71
++A+ +L
Sbjct: 246 QLAVAAL 252
>gi|386813044|ref|ZP_10100269.1| ribonuclease III rncS [planctomycete KSU-1]
gi|386405314|dbj|GAB63150.1| ribonuclease III rncS [planctomycete KSU-1]
Length = 250
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQ+ +QKE P Y +Q G H +F V + G + KSKK+AE SAA
Sbjct: 162 YKSILQQYSQKEYGVTPSYRVLQQIGPDHGKSFEVIVLIKGNEYGRGWGKSKKEAEQSAA 221
Query: 143 K 143
K
Sbjct: 222 K 222
>gi|355562257|gb|EHH18851.1| Double-stranded RNA-specific editase B2 [Macaca mulatta]
Length = 614
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 127 KNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEL 184
Query: 145 AYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
A + PN Q GP + QAD+ + Q
Sbjct: 185 ALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic]
gi|259646552|sp|C4K1R3.1|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic]
Length = 227
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SHA TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHASTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|348575574|ref|XP_003473563.1| PREDICTED: double-stranded RNA-specific editase B2 [Cavia
porcellus]
Length = 784
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 166 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEL 223
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + D++S
Sbjct: 224 ALKSFVQFPNACQAHLAMGSSTNLCTDFTS 253
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----DDSVLYKNVLQELAQKEAY 97
I G Y H F E A+ ++ L +K + +K LQEL +
Sbjct: 139 IFGAIYREHGF---------ETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKA 189
Query: 98 ALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPS 155
+PVY+ +G H TF + V G V +GQG +KK AE AA+ A L+E P
Sbjct: 190 PMPVYSATATGPEHDQTFSAVATVAGLSVGNGQG-HNKKLAEQQAAQEACQTLRETPLLV 248
Query: 156 QGPA 159
QG A
Sbjct: 249 QGTA 252
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q++ + Y+ ++ G +H FVS V + G+ KSKK+AE AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 143 KVAYMRLK 150
++A +LK
Sbjct: 234 QMALQKLK 241
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
+K+QLQ Q+ + + YS E +GP H F +V+++GQ + KEAE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 64 AKVALMSL 71
A++AL L
Sbjct: 233 AQMALQKL 240
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 16 KNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75
K P + +RE A+R + Y + P + + + E ++ M S+
Sbjct: 161 KEYPEAVGKTKREAKEEAARLVYNEICGSEKYGVERSTPPVNQPQ-EMPEITDMMKSVSV 219
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
D Y +++ E QK+ ++ + G SH P F + + G + K+ K
Sbjct: 220 TTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAK 279
Query: 136 QAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA---- 191
+A +AA++A+ L+ P+ S VS D+ A+A S+++ + + ++TA
Sbjct: 280 EARQNAAQLAWPVLQSPSCSG----VSGDVPAEASAPKSTIK-----NCENGLETAPVPV 330
Query: 192 --GRLVFNPNSMPKVQAEEIR 210
G P + PK Q+ +++
Sbjct: 331 QEGVGFSKPPATPKDQSSDVK 351
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 16 KNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75
K P + +RE A+R + Y + P + + + E ++ M S+
Sbjct: 161 KEYPEAVGKTKREAKEEAARLVYNEICGSEKYGVERSTPPVNQPQ-EMPEITDMMKSVSV 219
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKK 135
D Y +++ E QK+ ++ + G SH P F + + G + K+ K
Sbjct: 220 TTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGEGKTAK 279
Query: 136 QAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA---- 191
+A +AA++A+ L+ P+ S VS D+ A+A S+++ + + ++TA
Sbjct: 280 EARQNAAQLAWPVLQSPSCSG----VSGDVPAEASAPKSTIK-----NCENGLETAPVPV 330
Query: 192 --GRLVFNPNSMPKVQAEEIR 210
G P + PK Q+ +++
Sbjct: 331 QEGVGFSKPPATPKDQSSDVK 351
>gi|395827514|ref|XP_003786946.1| PREDICTED: double-stranded RNA-specific editase B2 [Otolemur
garnettii]
Length = 1031
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 419 SVTPKNALVQLHELKP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 476
Query: 141 AAKVAYMRLKE-PNPSQ 156
AA++A + PN Q
Sbjct: 477 AAELALRSFVQFPNACQ 493
>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
mulatta]
Length = 504
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 127 KNALVQLHELRP-GLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMRAAEL 184
Query: 145 AYMRLKE-PNPSQ-------GPALVSPDIQAQADYSSSSLQ 177
A + PN Q GP + QAD+ + Q
Sbjct: 185 ALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQ 225
>gi|410722568|ref|ZP_11361838.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410596122|gb|EKQ50808.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 217
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK+ L EL+ KE + + K+ GE H TF + GE F SKK+A+ +AAK
Sbjct: 152 YKSELHELSNKEGFCIVYDLLKEKGEPHRKTFTIAALIDGENFGTGVGGSKKEAQQNAAK 211
Query: 144 VAYMRL 149
A L
Sbjct: 212 EALKNL 217
>gi|350415252|ref|XP_003490582.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
impatiens]
Length = 663
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKTGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 148 RLKE----PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPK 203
+ + P Q P I + D++ S+VT +H + L P S K
Sbjct: 139 NIIQFRNTPEVHQAINTCQPSIPLEPDFT-----SDVTERDNHLVNAFKTLTQEPKSTNK 193
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 45/147 (30%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------------- 71
++ GP HA F V IDGQTYE T K A+H AA++AL ++
Sbjct: 97 DQTGPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELALRNIIQFRNTPEVHQAIN 154
Query: 72 ------------SLDKFQQDDSVL--YKNVLQE------LAQK-------EAYALPVYN- 103
+ D ++D+ ++ +K + QE +K E Y VYN
Sbjct: 155 TCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKSTNKFLEKGPVALINELYPGVVYNC 214
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+GES+A F ++ V GE F G G
Sbjct: 215 VSDNGESYA-KFTISITVDGETFEGTG 240
>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
carolinensis]
Length = 714
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 96 SVTPKNALVQLHELKP-GLQYKMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 153
Query: 141 AAKVAYMR-LKEPNPSQGPALVSPDIQAQADYSS 173
AA++A ++ PN Q + D++S
Sbjct: 154 AAELALKSFIQFPNACQAHFAMGNCFNPSTDFTS 187
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----DDSVLYKNVLQELAQKEAY 97
I G Y H F E A+ ++ L +K + +K LQEL +
Sbjct: 139 IFGAIYREHGF---------ETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKA 189
Query: 98 ALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPS 155
+PVY+ +G H TF + V G V +GQG +KK AE AA+ A L+E P
Sbjct: 190 PMPVYSATATGPEHDQTFSAVATVAGLTVGNGQG-HNKKLAEQQAAQEACQTLRETPLLV 248
Query: 156 QGPA 159
QG A
Sbjct: 249 QGTA 252
>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
Length = 337
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 6 KNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKV---TIDGQTYESHQFFPTLKEAEH 61
K +L + KK P P Y E+E GP H F C V T+DG P +K+AE+
Sbjct: 262 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAEN 321
Query: 62 EAAKVALMSL 71
AA + +L
Sbjct: 322 SAASFMICTL 331
>gi|395645479|ref|ZP_10433339.1| ribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442219|gb|EJG06976.1| ribonuclease III [Methanofollis liminatans DSM 4140]
Length = 235
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 88 LQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
LQE Q+E LP Y + G H PTFVS V V G + SK A+ AA+VA
Sbjct: 169 LQERLQQERLGLPEYLIVSRDGPDHDPTFVSAVTVAGHFSAFGSGGSKAGAKKEAARVAL 228
Query: 147 MRLKEPN 153
L+ P+
Sbjct: 229 EVLETPS 235
>gi|390956281|ref|YP_006420038.1| ribonuclease III [Terriglobus roseus DSM 18391]
gi|390411199|gb|AFL86703.1| ribonuclease III [Terriglobus roseus DSM 18391]
Length = 280
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q A P+Y T ++ G H F V +G V + SKK A+ +AA
Sbjct: 193 WKSALQELLQARAEGQPLYRTVEEIGNDHNKRFRVEVLLGDRVLADGEGTSKKSAQQAAA 252
Query: 143 KVAY 146
+VAY
Sbjct: 253 RVAY 256
>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 567
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G +H+ TF V+V +G G S K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGAAHSSTFTVLVKVKDYEQTGTG-HSIKEAEKNAAR 218
Query: 144 VAYMRLKEPN 153
RLK N
Sbjct: 219 SLLHRLKMTN 228
>gi|429124459|ref|ZP_19184991.1| ribonuclease III [Brachyspira hampsonii 30446]
gi|426279698|gb|EKV56719.1| ribonuclease III [Brachyspira hampsonii 30446]
Length = 251
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 68 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVF 126
L +L ++ F +D YK + QEL QK+ P+Y + + E++ F + V V + F
Sbjct: 151 LSNLDIENFDKD----YKTIFQELIQKKHKTSPIYKSCEFHDENNNDMFKAEVYVNDKTF 206
Query: 127 SGQGAKSKKQAEMSAAKVA 145
+ KSKK+AE +AAK A
Sbjct: 207 ALGIGKSKKEAETNAAKKA 225
>gi|418966405|ref|ZP_13518146.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
gi|383340226|gb|EID18538.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
Length = 232
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 41 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD---SVLYKNVLQELAQKEAY 97
TI G +E+ L + + EA K L + + K + D + YK LQEL Q
Sbjct: 116 TILGDLFEAF-LGALLLDKDVEAVKKFLYQIMIPKVEVGDFEQVIDYKTKLQELLQVNGD 174
Query: 98 ALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAY 146
VY +SG +HA F +V V G V GQG +SKK AE AAK A+
Sbjct: 175 VDIVYQVISESGPAHAKEFDVSVSVDGRVV-GQGQGRSKKLAEQEAAKNAF 224
>gi|338535028|ref|YP_004668362.1| ribonuclease III [Myxococcus fulvus HW-1]
gi|337261124|gb|AEI67284.1| ribonuclease III [Myxococcus fulvus HW-1]
Length = 257
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQELA + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 170 YKTLLQELAHERLKLQPRYRVVSESGPEHSKVFEVELVLGETAFARASGRSKKEAEQSAA 229
Query: 143 KVAYMRLKE 151
+ +L++
Sbjct: 230 QATLEKLRQ 238
>gi|390474609|ref|XP_003734807.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced, double-stranded
RNA-activated protein kinase [Callithrix jacchus]
Length = 552
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY---ESHQFFPTLKEAE 60
+ +L Y QK+ + L GPPH RF +V IDG+ + E A
Sbjct: 9 FFMEELNKYRQKQGVVLRYKELPNSGPPHDRRFAFQVIIDGREFPEAEGRSKKEAKNAAA 68
Query: 61 HEAAKV------ALMSLSL---DKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 111
A ++ A+ LSL D ++ Y ++ +AQKE + Y SG +
Sbjct: 69 KVAVEILNKENKAVSPLSLTPTDSSERSSMGNYIGLINRIAQKERLTVN-YEQCASGVNG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F +VG + + +K++A+ AAK+AY+++
Sbjct: 128 PEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165
>gi|338210252|ref|YP_004654299.1| ribonuclease 3 [Runella slithyformis DSM 19594]
gi|336304065|gb|AEI47167.1| Ribonuclease 3 [Runella slithyformis DSM 19594]
Length = 248
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K+ L E AQ+E + ++ G H F+S V + GEVF+ SKK+AE SAA+
Sbjct: 180 FKSRLIEWAQREGKEVRFMIVEEKGSRHFREFISQVILSGEVFAQGSGYSKKKAEQSAAE 239
Query: 144 VA 145
A
Sbjct: 240 KA 241
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K+ LQEL P Y +G H F +TV +G E G G ++KK+AE+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIG-EAEYGHGVGRTKKEAELKAA 220
Query: 143 KVAYMRLKE 151
AY L E
Sbjct: 221 ASAYKTLDE 229
>gi|354464998|ref|XP_003494967.1| PREDICTED: double-stranded RNA-specific editase B2 [Cricetulus
griseus]
Length = 739
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 121 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 178
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + + D++S
Sbjct: 179 ALKSFVQFPNAFQAHLAMGSSTSSCTDFTS 208
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q++ VY+ +SG H TF VE+ G + KSKK AE AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
Query: 143 KVAYMRL 149
++ +L
Sbjct: 236 QLTLEKL 242
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Y Q+ +Y E GP H F +V I+G TYE+ + K AE A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGS-GKSKKIAEQHA 234
Query: 64 AKVALMSLSLDK 75
A++ L L DK
Sbjct: 235 AQLTLEKLMADK 246
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K+ LQE+ QK + PVY + ++G +HAP F S V V GE+ SKK+++ AA
Sbjct: 162 KSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAAL 221
Query: 144 VAYMRL 149
A +L
Sbjct: 222 SALDKL 227
>gi|383753564|ref|YP_005432467.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
gi|381365616|dbj|BAL82444.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
Length = 240
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 45 QTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN- 103
Q Y Q P ++AE A +D YK +LQE+ +EA Y
Sbjct: 147 QDYVVRQLMPLFRQAEQGA------------ILKD----YKTILQEVVYQEAQQTVSYEL 190
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
SG H TF V + G+V +SKK+AE AAK A ++L+
Sbjct: 191 VSTSGPDHDKTFTFNVCITGKVMGTGTGRSKKEAEQRAAKEALVKLQ 237
>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera]
Length = 364
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 6 KNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKV---TIDGQTYESHQFFPTLKEAEH 61
K +L + KK P P Y E+E GP H F C V T+DG P +K+AE+
Sbjct: 289 KQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAEN 348
Query: 62 EAAKVALMSL 71
AA + +L
Sbjct: 349 SAASFMICTL 358
>gi|208690907|gb|ACI31229.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Symphalangus syndactylus]
Length = 551
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTID--------GQTYESHQFFPT 55
+ +L +Y QK+ + L GPPH RF +V ID G++ + +
Sbjct: 9 FFMEELNTYRQKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRSKKEAKNAAA 68
Query: 56 LKEAE---HEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGES- 110
E E V+ + L+ + S+ Y ++ AQK+ + N +Q G
Sbjct: 69 KLAVEILNKEKKGVSPLVLTTTSSSEGLSIGNYMGLINRFAQKKRLTV---NYEQCGWGV 125
Query: 111 HAPT-FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPDIQAQ 168
H P F ++G + +S +K++A+ AAK+AY++ L E + ++ S A
Sbjct: 126 HGPKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQILSEDTSVKSDSMSSDSFAAT 185
Query: 169 ADYSSSSL 176
D SSSL
Sbjct: 186 CDSQSSSL 193
>gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
Length = 249
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 6 KNQLQSYTQKKNLPLPMY-SCEREGPPHASRFKCKVTIDGQTYES 49
K LQ + + LPLP Y + + +GP HA RF VT GQ+ E
Sbjct: 181 KTALQEWVLARGLPLPAYRTVQMDGPSHAPRFVIAVTAAGQSAEG 225
>gi|418743679|ref|ZP_13300038.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|418751592|ref|ZP_13307876.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|421111669|ref|ZP_15572142.1| ribonuclease III [Leptospira santarosai str. JET]
gi|409968065|gb|EKO35878.1| ribonuclease III [Leptospira santarosai str. MOR084]
gi|410795074|gb|EKR92971.1| ribonuclease III [Leptospira santarosai str. CBC379]
gi|410802865|gb|EKS09010.1| ribonuclease III [Leptospira santarosai str. JET]
Length = 248
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E++ + + K AE A
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEANGYGASKKTAEQNA 235
Query: 64 AK 65
AK
Sbjct: 236 AK 237
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE +QK +LPVY K +SG H+ F +V + + + SKK AE +AA
Sbjct: 177 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEANGYGASKKTAEQNAA 236
Query: 143 KVAYMRLKE 151
K + R+++
Sbjct: 237 KELFNRIRK 245
>gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Doryteuthis
opalescens]
Length = 687
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
L KN L +L + + L Q+G HAPTF VEV GEVF G G +KK+A++ AA
Sbjct: 65 LPKNALMQLNEIKP-GLEFQLMGQTGPVHAPTFNMKVEVNGEVFEGAGP-TKKKAKLQAA 122
Query: 143 KVA 145
+ A
Sbjct: 123 EKA 125
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 142
+K+ LQEL P Y +G H F +TV +G E G G ++KK+AE+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIG-EAEYGHGVGRTKKEAELKAA 220
Query: 143 KVAYMRLKE 151
AY L E
Sbjct: 221 ASAYKTLDE 229
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 54 PTLKEAEHEAAKVALMSLSLDKFQQDDSVL----YKNVLQELAQKEAYALPVY---NTKQ 106
K++++ AK + L L K + + + YK VLQE Q + +P Y NTK
Sbjct: 132 AIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLLNTK- 190
Query: 107 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
G H F +V +++ KSKK+AE AAK A ++LK
Sbjct: 191 -GPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKLK 233
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ QK+ LP Y RE GP H F+ ++TI G + KEAE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 64 AKVALMSLS 72
AK AL L+
Sbjct: 226 AKEALTQLA 234
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQE+ QK +LP Y T ++SG H F + + G V G G +SKK+AE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 142 AKVAYMRL 149
AK A +L
Sbjct: 226 AKEALTQL 233
>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
Length = 633
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 87 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 145
+L EL Q Y L Q+G HAP F +VEV G+ + GQG +SKK A + AA A
Sbjct: 62 MLNELRQGLIYKL----ESQTGPVHAPLFTISVEVDGQKYMGQG-RSKKVARIEAAATA 115
>gi|355572774|ref|ZP_09043840.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
gi|354824318|gb|EHF08571.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
Length = 240
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK +LQ + QK + +P+Y +EGP HA F +V++ G + + T +A EA
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGI-TKTQATQEA 228
Query: 64 AKVALMSLSL 73
A+ AL SL L
Sbjct: 229 ARNALCSLGL 238
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE QK + +PVY + G HAP F V V G + +K QA AA
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGITKTQATQEAA 229
Query: 143 KVAYMRL 149
+ A L
Sbjct: 230 RNALCSL 236
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
+V YK LQE+ Q++ L Y+ ++G +H F + V V G+V ++KKQAE
Sbjct: 75 TVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQ 134
Query: 140 SAAKVAYMRL 149
SAA+ A +L
Sbjct: 135 SAAQFAINQL 144
>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
gi|122425284|sp|Q1RHA2.1|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043340|sp|A8GYE2.1|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
Length = 227
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + + +P+Y K+ G +H TF +V++ G +G+G S K+AE +AA+
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKG-HSIKEAEKNAAR 218
Query: 144 VAYMRLK 150
+LK
Sbjct: 219 ELLHKLK 225
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDG--QTYESHQFFPTLKEAEHE 62
K LQ + Q K+ +P+Y +REG H S F V I+G QT + H ++KEAE
Sbjct: 160 KTALQEWAQSKDHHIPIYRLIKREGVAHLSTFTVSVKINGYEQTGKGH----SIKEAEKN 215
Query: 63 AAKVALMSLSL 73
AA+ L L L
Sbjct: 216 AARELLHKLKL 226
>gi|344238997|gb|EGV95100.1| Double-stranded RNA-specific editase B2 [Cricetulus griseus]
Length = 708
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 90 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 147
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + + D++S
Sbjct: 148 ALKSFVQFPNAFQAHLAMGSSTSSCTDFTS 177
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q++ + Y Q G +H FVS V + GE KSKK+AE AA
Sbjct: 175 FKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEELGVGTGKSKKEAEQHAA 234
Query: 143 KVAYMRLK 150
++A LK
Sbjct: 235 QMALGVLK 242
>gi|208690897|gb|ACI31224.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Lagothrix lagotricha]
Length = 552
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY---ESHQFFPTLKEAE 60
+K +L Y QK+ + L GPPH RF +V IDG+ + E A
Sbjct: 9 FFKEELNKYRQKQGVVLTYIELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEAKNAAA 68
Query: 61 HEAAKV------ALMSLSL---DKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 111
A ++ A+ LSL D ++ Y ++ +AQK+ + Y SG +
Sbjct: 69 KVAVEILNKENKAVSPLSLTPTDSSERLSIGNYIGLINRIAQKKRLTVN-YEPCASGLNG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F +VG + + +K++A+ AAK+AY+++
Sbjct: 128 PEGFHYKCKVGQKEYGIGTGSTKQEAKQLAAKLAYLQI 165
>gi|425626938|gb|AFX89027.1| R2D2 isoform b [Mayetiola destructor]
Length = 320
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKV 66
+QLQ ++ + P Y R+ H +F C V G + EA+H AA
Sbjct: 23 SQLQELCAQEKVAPPTYEFFRD--EHDKKFGCLVQAFGPEIAKGSGLSKM-EAKHAAAAS 79
Query: 67 ALMSLS-LDKFQQDDSVLY--------KNVLQEL---AQKEAYALPVYNTKQSGESHAPT 114
+ LS LD+F+ D +L KN + +L + + P YN K+ G +H
Sbjct: 80 LIRLLSQLDRFK--DRILAVEHVPAKDKNAVGDLINFCMQHNFPTPNYNVKEGGLAHLRE 137
Query: 115 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSP 163
F + +VGG +GA +K+ A+ AA+ +L + + +V P
Sbjct: 138 FTAECQVGGSSCIAKGA-TKQGAKHYAAEAMLFQLSDVENNNNGEMVKP 185
>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
Length = 701
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|386746174|ref|YP_006219391.1| ribonuclease III [Helicobacter pylori HUP-B14]
gi|384552423|gb|AFI07371.1| ribonuclease III [Helicobacter pylori HUP-B14]
Length = 239
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P+Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YYALQKLKE 237
>gi|208690895|gb|ACI31223.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Callicebus moloch]
Length = 551
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY---ESHQFFPTLKEAE 60
+ +L Y QK+ + L GPPH RF +V IDG+ + E A
Sbjct: 9 FFMEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEAKNAAA 68
Query: 61 HEAAKV------ALMSLSLDKFQQDDSVL--YKNVLQELAQKEAYALPVYNTKQSGESHA 112
A ++ A+ LSL + + Y ++ +AQKE + Y SG +
Sbjct: 69 KVAVEILNKENKAVSPLSLTPTDSSEGSIGNYVGLINRIAQKERVTVN-YEQCASGVNGP 127
Query: 113 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F +VG + + +K++A+ AAK+AY+++
Sbjct: 128 EGFHYKCKVGQKEYGIATGSTKQEAKQLAAKLAYLQI 164
>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
Length = 701
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|340725561|ref|XP_003401137.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
terrestris]
Length = 663
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKTGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 148 RLKE----PNPSQGPALVSPDIQAQADYSS 173
+ + P Q P I + D++S
Sbjct: 139 NIIQFRNTPEVHQAINTCQPSIPLEPDFTS 168
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 49/149 (32%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------------- 71
++ GP HA F V IDGQTYE T K A+H AA++AL ++
Sbjct: 97 DQTGPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELALRNIIQFRNTPEVHQAIN 154
Query: 72 ------------SLDKFQQDDSVLYKNVLQELAQK-----------------EAYALPVY 102
+ D ++D+ ++ N + L Q+ E Y VY
Sbjct: 155 TCQPSIPLEPDFTSDVTERDNHLV--NAFKTLTQEPKSPNKFLDKGPVALINELYPGVVY 212
Query: 103 NT-KQSGESHAPTFVSTVEVGGEVFSGQG 130
N +GES+A F ++ V GE F G G
Sbjct: 213 NCISDNGESYA-KFTISITVDGETFEGTG 240
>gi|449893615|ref|ZP_21788846.1| ribonuclease III [Streptococcus mutans SF12]
gi|449994548|ref|ZP_21822594.1| ribonuclease III [Streptococcus mutans A9]
gi|449185277|gb|EMB87170.1| ribonuclease III [Streptococcus mutans A9]
gi|449255782|gb|EMC53624.1| ribonuclease III [Streptococcus mutans SF12]
Length = 231
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALKKLQ 228
>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 237
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+DK ++ +L +K LQE+ QK VYN K G H F + + + EV GQG
Sbjct: 149 IDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVM-GQG 207
Query: 131 AK-SKKQAEMSAAKVAYMRLKE 151
SKK++E +AAK A RL E
Sbjct: 208 VGFSKKESEQNAAKAALQRLGE 229
>gi|380024649|ref|XP_003696105.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Apis
florea]
Length = 663
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 84 LNELKSGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 138
Query: 148 RLKE----PNPSQGPALVSPDIQAQADYSS 173
+ + P Q P I + D++S
Sbjct: 139 NIVQFRNTPEVHQAINTCQPSIPLEPDFTS 168
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 45/147 (30%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------------- 71
++ GP HA F V IDGQTYE T K A+H AA++AL ++
Sbjct: 97 DQTGPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELALRNIVQFRNTPEVHQAIN 154
Query: 72 ------------SLDKFQQDDSVL--YKNVLQE------LAQK-------EAYALPVYN- 103
+ D ++D+ ++ +K + QE +K E Y VY
Sbjct: 155 TCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKNTNKFLEKGPVALINELYPGVVYKC 214
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+GES+A F +V + GE F G G
Sbjct: 215 VSDNGESYA-KFTISVTIDGETFEGTG 240
>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 234
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH RF VTID + + + KEAE A
Sbjct: 163 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSK-KEAEQNA 221
Query: 64 AKVALMSLS 72
A+ AL +L
Sbjct: 222 AREALKNLG 230
>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
Length = 226
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE Q ++ Y ++G S+AP FV V V G V +SKKQAE +AA
Sbjct: 158 YKTKLQEYVQSDSRQTVKYELVSETGPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAA 217
Query: 143 KVAYMRL 149
+ A+ ++
Sbjct: 218 RNAFEKM 224
>gi|351702783|gb|EHB05702.1| Double-stranded RNA-specific editase B2 [Heterocephalus glaber]
Length = 805
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 187 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGFTFEGTGP-TKKKAKMHAAEL 244
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + D++S
Sbjct: 245 ALKSFVQFPNACQAHLAMGSGTSPCTDFTS 274
>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
Length = 243
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL+QK+ LP+Y K G H TF V++ + + KSKK+A + A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVA 231
Query: 143 KVAY 146
++A+
Sbjct: 232 ELAW 235
>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
Length = 241
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+DK ++ +L +K LQE+ QK VYN K G H F + + + EV GQG
Sbjct: 153 IDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVM-GQG 211
Query: 131 AK-SKKQAEMSAAKVAYMRLKE 151
SKK++E +AAK A RL E
Sbjct: 212 VGFSKKESEQNAAKAALQRLGE 233
>gi|84616741|emb|CAJ47419.1| RNA-specific adenosine deaminase [Gallus gallus]
Length = 853
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 67/185 (36%), Gaps = 50/185 (27%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL-----KEAEHEA 63
L Y QK + ++GPPH RF V + Q FP + K A+ A
Sbjct: 262 LMEYGQKSGNMIEFLLLSQDGPPHDPRFSYCVKM------GDQIFPAVVGNSKKGAKQMA 315
Query: 64 AKVALMSLS------------LDKFQQDDS----------------------VLYKNV-- 87
A+VA+ LS + K Q + S + Y NV
Sbjct: 316 AEVAVKILSGESAPRVPPEQPVVKPQGERSCALQIVIPDEPKAVKSKGVGELIKYLNVNP 375
Query: 88 ---LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
L E A+ +A Q+G H P FV +VGG F A SKKQ + AA
Sbjct: 376 VSGLLEYARSNGFAAEFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGKQEAADA 435
Query: 145 AYMRL 149
A L
Sbjct: 436 ALRVL 440
>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
gi|33112435|sp|Q9JI20.2|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
Length = 239
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEM 139
SV YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE
Sbjct: 166 SVDYKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQ 225
Query: 140 SAAKVAYMRLKE 151
A A +LKE
Sbjct: 226 QCAYYALQKLKE 237
>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
Length = 742
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417886270|ref|ZP_12530417.1| ribonuclease III [Lactobacillus oris F0423]
gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341593768|gb|EGS36593.1| ribonuclease III [Lactobacillus oris F0423]
Length = 232
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 73 LDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS-GQG 130
LD D +V K LQE Q++ L Y+ ++SG + P F V G+V + GQG
Sbjct: 151 LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESGTENNPAFHVDVAANGQVIADGQG 210
Query: 131 AKSKKQAEMSAAKVAYMRLK 150
+ SKKQAEM AA+ A +L+
Sbjct: 211 S-SKKQAEMQAAQRALKKLR 229
>gi|312088759|ref|XP_003145984.1| hypothetical protein LOAG_10412 [Loa loa]
Length = 689
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 118/304 (38%), Gaps = 67/304 (22%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPH--ASRFKCKVTIDGQTY----------ESH 50
H++ NQL + N+ +P+ S + +C+ ID T+ + +
Sbjct: 328 HIFANQLN---KSCNIQIPIASIKTSCAESDIVDYLQCENLIDHFTFTPLSFIKNSLQWN 384
Query: 51 QFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVY----NTKQ 106
+F +KE E+ MS ++ + L++ + + K Y LP NT
Sbjct: 385 EFCEAIKEYENCLTN---MSCRVEPISSANVALFRTICGKEETKTKYYLPCLTQFINTDI 441
Query: 107 SGESHAP-------------TFVSTVEVGGEVFSGQGAK-SKKQAEMSAAKVAYMRLKEP 152
+ P ST+E + + ++ +QA + ++ +++
Sbjct: 442 GMKCSEPFVGLDLLVKDNSQKICSTLETMLSCAATELSRQCTEQALKHVVSMLHIWVRKF 501
Query: 153 NPS---------------------QGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA 191
NPS GP +S D Q + +SSS++Q +T N++
Sbjct: 502 NPSCSISGYGTANDPKLEEDFSLDSGPTHISID-QTVSPFSSSTIQRIITTSSLPNLEAT 560
Query: 192 GRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSS 251
L + N +R+ TT N + +LS PQPE + SSD +S K M S+
Sbjct: 561 DNLSSSNN---------LRKGTTSNIVLPELELSTIPQPELTLSSDTELASHWMKDMSST 611
Query: 252 SLPL 255
++P+
Sbjct: 612 NIPV 615
>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
Length = 745
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 214
>gi|222537768|ref|NP_001138509.1| interferon-induced, double-stranded RNA-activated protein kinase
[Pan troglodytes]
gi|397493624|ref|XP_003817703.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Pan paniscus]
gi|208690875|gb|ACI31213.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
paniscus]
gi|208690877|gb|ACI31214.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410211790|gb|JAA03114.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410259560|gb|JAA17746.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410259564|gb|JAA17748.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410259566|gb|JAA17749.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410305056|gb|JAA31128.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410305058|gb|JAA31129.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410305062|gb|JAA31131.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410305064|gb|JAA31132.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
gi|410337387|gb|JAA37640.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
troglodytes]
Length = 552
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
+ +L +Y QK+ + L GPPH RF +V IDG+ + ++
Sbjct: 9 FFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFRVIIDGREFPEGEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
++ E V+ + L+ + S+ Y ++ +AQK+ + Y SG
Sbjct: 69 KLAVEILNKEKKAVSPLVLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGVHG 127
Query: 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPDIQAQAD 170
F ++G + +S + +K++A+ AAK+AY++ L E + L S D
Sbjct: 128 PEGFHYKCKMGQKEYSIGTSSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSGSFATTCD 187
Query: 171 YSSSSLQSNVTA 182
S+SL ++ A
Sbjct: 188 SQSNSLVTSTLA 199
>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
Length = 620
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 88 LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYM 147
L EL Y + Q+G +HAP F V++ G+ + G+G ++KK A+ +AA++A
Sbjct: 41 LNELKSGAVYKV----VDQTGPTHAPIFTIAVQIDGQTYEGKG-RTKKMAKHAAAELALR 95
Query: 148 RLKE----PNPSQGPALVSPDIQAQADYSS 173
+ + P Q P I + D++S
Sbjct: 96 NIVQFRNTPEVHQAINTCQPSIPLEPDFTS 125
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 45/147 (30%)
Query: 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL-------------- 71
++ GP HA F V IDGQTYE T K A+H AA++AL ++
Sbjct: 54 DQTGPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELALRNIVQFRNTPEVHQAIN 111
Query: 72 ------------SLDKFQQDDSVL--YKNVLQE------LAQK-------EAYALPVYN- 103
+ D ++D+ ++ +K + QE +K E Y VY
Sbjct: 112 TCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKNTNKFLEKGPVALINELYPGVVYKC 171
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+GES+A F +V + GE F G G
Sbjct: 172 VSDNGESYA-KFTISVTIDGETFEGTG 197
>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
Length = 230
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K++LQE+AQ + P+Y +SG H FV VE+G E ++ KSK+ A+ AAK
Sbjct: 162 KSLLQEIAQSRYKSTPLYTLISESGPDHDKQFVMRVEIGDESYAQGTGKSKQTAQEDAAK 221
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQE AQ + P Y ++ G H TFV+ V E F+ QG +SKK AE A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVNKE-FTSQGKGRSKKAAEQDA 521
Query: 142 AKVAYMRLKEPNPS 155
A+ + L + +PS
Sbjct: 522 AREVLILLGQEDPS 535
>gi|450159067|ref|ZP_21879220.1| ribonuclease III [Streptococcus mutans 66-2A]
gi|449241636|gb|EMC40257.1| ribonuclease III [Streptococcus mutans 66-2A]
Length = 231
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 246
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K L E P YNT SG +H P F STV + G+V+ +KK+AE AA+
Sbjct: 181 WKTELLEKIAGRGLGEPEYNTTISGPAHDPHFTSTVSLQGKVWGHGEGHTKKEAEHHAAR 240
Query: 144 VA 145
A
Sbjct: 241 EA 242
>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|429243878|ref|ZP_19207362.1| ribonuclease III [Clostridium botulinum CFSAN001628]
gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|428759084|gb|EKX81473.1| ribonuclease III [Clostridium botulinum CFSAN001628]
Length = 234
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH RF VTID + + + KEAE A
Sbjct: 163 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSK-KEAEQNA 221
Query: 64 AKVALMSLS 72
A+ AL +L
Sbjct: 222 AREALKNLG 230
>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
Length = 237
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH RF VTID + + + KEAE A
Sbjct: 166 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSK-KEAEQNA 224
Query: 64 AKVALMSLS 72
A+ AL +L
Sbjct: 225 AREALKNLG 233
>gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior]
Length = 808
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y KK L P+Y C GP H F KV ++G Y+ K+A+ EAA++
Sbjct: 740 LGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKAEAAQIC 799
Query: 68 LMSLSL 73
L +L L
Sbjct: 800 LQNLGL 805
>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
gi|449865592|ref|ZP_21779071.1| ribonuclease III [Streptococcus mutans U2B]
gi|449870030|ref|ZP_21780421.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|450036656|ref|ZP_21835579.1| ribonuclease III [Streptococcus mutans M21]
gi|450082186|ref|ZP_21852201.1| ribonuclease III [Streptococcus mutans N66]
gi|450106671|ref|ZP_21860623.1| ribonuclease III [Streptococcus mutans SF14]
gi|81451148|sp|Q8DT66.1|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
gi|449157259|gb|EMB60706.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|449193614|gb|EMB94994.1| ribonuclease III [Streptococcus mutans M21]
gi|449214558|gb|EMC14814.1| ribonuclease III [Streptococcus mutans N66]
gi|449223107|gb|EMC22812.1| ribonuclease III [Streptococcus mutans SF14]
gi|449264141|gb|EMC61490.1| ribonuclease III [Streptococcus mutans U2B]
Length = 231
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|393909181|gb|EJD75350.1| hypothetical protein LOAG_17493 [Loa loa]
Length = 911
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 118/304 (38%), Gaps = 67/304 (22%)
Query: 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPH--ASRFKCKVTIDGQTY----------ESH 50
H++ NQL + N+ +P+ S + +C+ ID T+ + +
Sbjct: 550 HIFANQLN---KSCNIQIPIASIKTSCAESDIVDYLQCENLIDHFTFTPLSFIKNSLQWN 606
Query: 51 QFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVY----NTKQ 106
+F +KE E+ MS ++ + L++ + + K Y LP NT
Sbjct: 607 EFCEAIKEYENCLTN---MSCRVEPISSANVALFRTICGKEETKTKYYLPCLTQFINTDI 663
Query: 107 SGESHAP-------------TFVSTVEVGGEVFSGQGAK-SKKQAEMSAAKVAYMRLKEP 152
+ P ST+E + + ++ +QA + ++ +++
Sbjct: 664 GMKCSEPFVGLDLLVKDNSQKICSTLETMLSCAATELSRQCTEQALKHVVSMLHIWVRKF 723
Query: 153 NPS---------------------QGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTA 191
NPS GP +S D Q + +SSS++Q +T N++
Sbjct: 724 NPSCSISGYGTANDPKLEEDFSLDSGPTHISID-QTVSPFSSSTIQRIITTSSLPNLEAT 782
Query: 192 GRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSS 251
L + N +R+ TT N + +LS PQPE + SSD +S K M S+
Sbjct: 783 DNLSSSNN---------LRKGTTSNIVLPELELSTIPQPELTLSSDTELASHWMKDMSST 833
Query: 252 SLPL 255
++P+
Sbjct: 834 NIPV 837
>gi|345324200|ref|XP_001511395.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Ornithorhynchus anatinus]
Length = 893
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 269 SVAPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 326
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 327 AAELALRSFVQFPNACQAHFAMGNGASPPTDFTS 360
>gi|449920226|ref|ZP_21798388.1| ribonuclease III [Streptococcus mutans 1SM1]
gi|449158830|gb|EMB62236.1| ribonuclease III [Streptococcus mutans 1SM1]
Length = 231
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK++LQEL+Q P Y K+SG H F V V + F K+KK AE AA
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTFGPGMGKNKKTAEQEAA 215
Query: 143 KVAY 146
++AY
Sbjct: 216 RIAY 219
>gi|344252498|gb|EGW08602.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A [Cricetulus griseus]
Length = 212
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 9 LQSYTQK-KNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKV 66
L Y K KN+P+ Y CER + H F +VT+ T + K A+H AA+
Sbjct: 39 LHEYGMKTKNIPV--YECERSDVQIHVPTFTFRVTVGDITCTGEGT--SKKLAKHRAAEA 94
Query: 67 ALMSLSL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYNTKQ-SGES 110
A+ L D D S KN LQELA + LP Y Q G +
Sbjct: 95 AINILKANASICFAVPDPSMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPA 154
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVS 162
H + + + + +G+GA SKKQA+ +AA+ + +P +LVS
Sbjct: 155 HKREYTTICRLESFMETGKGA-SKKQAKRNAAEKFLAKFSNISPENHISLVS 205
>gi|449958502|ref|ZP_21809787.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|450139209|ref|ZP_21872433.1| ribonuclease III [Streptococcus mutans NLML1]
gi|450176818|ref|ZP_21886044.1| ribonuclease III [Streptococcus mutans SM1]
gi|449170000|gb|EMB72745.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|449233214|gb|EMC32293.1| ribonuclease III [Streptococcus mutans NLML1]
gi|449244617|gb|EMC42987.1| ribonuclease III [Streptococcus mutans SM1]
Length = 231
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|449930017|ref|ZP_21801928.1| ribonuclease III [Streptococcus mutans 3SN1]
gi|449163899|gb|EMB66988.1| ribonuclease III [Streptococcus mutans 3SN1]
Length = 231
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
Length = 731
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 113 SVTPKNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 170
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 171 AAEMALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 204
>gi|290580116|ref|YP_003484508.1| ribonuclease III [Streptococcus mutans NN2025]
gi|387785786|ref|YP_006250882.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|397650125|ref|YP_006490652.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449883155|ref|ZP_21784950.1| ribonuclease III [Streptococcus mutans SA38]
gi|449886646|ref|ZP_21786331.1| ribonuclease III [Streptococcus mutans SA41]
gi|449896580|ref|ZP_21789793.1| ribonuclease III [Streptococcus mutans R221]
gi|449903105|ref|ZP_21791946.1| ribonuclease III [Streptococcus mutans M230]
gi|449910394|ref|ZP_21794689.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449915436|ref|ZP_21796285.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449923956|ref|ZP_21799326.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449936957|ref|ZP_21804303.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449942733|ref|ZP_21806143.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449948097|ref|ZP_21807841.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449965596|ref|ZP_21811915.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449969401|ref|ZP_21813219.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449981797|ref|ZP_21817972.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449985613|ref|ZP_21819761.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449988985|ref|ZP_21820855.1| ribonuclease III [Streptococcus mutans NVAB]
gi|450001131|ref|ZP_21825544.1| ribonuclease III [Streptococcus mutans N29]
gi|450004965|ref|ZP_21826386.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|450009568|ref|ZP_21828167.1| ribonuclease III [Streptococcus mutans A19]
gi|450022617|ref|ZP_21830065.1| ribonuclease III [Streptococcus mutans U138]
gi|450029673|ref|ZP_21832794.1| ribonuclease III [Streptococcus mutans G123]
gi|450040444|ref|ZP_21836806.1| ribonuclease III [Streptococcus mutans T4]
gi|450045382|ref|ZP_21838444.1| ribonuclease III [Streptococcus mutans N34]
gi|450057211|ref|ZP_21842431.1| ribonuclease III [Streptococcus mutans NLML4]
gi|450062246|ref|ZP_21844215.1| ribonuclease III [Streptococcus mutans NLML5]
gi|450067623|ref|ZP_21846753.1| ribonuclease III [Streptococcus mutans NLML9]
gi|450070918|ref|ZP_21847870.1| ribonuclease III [Streptococcus mutans M2A]
gi|450076690|ref|ZP_21849975.1| ribonuclease III [Streptococcus mutans N3209]
gi|450086822|ref|ZP_21853909.1| ribonuclease III [Streptococcus mutans NV1996]
gi|450092975|ref|ZP_21856361.1| ribonuclease III [Streptococcus mutans W6]
gi|450097913|ref|ZP_21857712.1| ribonuclease III [Streptococcus mutans SF1]
gi|450111244|ref|ZP_21862577.1| ribonuclease III [Streptococcus mutans SM6]
gi|450115163|ref|ZP_21863766.1| ribonuclease III [Streptococcus mutans ST1]
gi|450120101|ref|ZP_21865491.1| ribonuclease III [Streptococcus mutans ST6]
gi|450128458|ref|ZP_21868976.1| ribonuclease III [Streptococcus mutans U2A]
gi|450132303|ref|ZP_21869976.1| ribonuclease III [Streptococcus mutans NLML8]
gi|450144543|ref|ZP_21874088.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|450148952|ref|ZP_21875891.1| ribonuclease III [Streptococcus mutans 14D]
gi|450153375|ref|ZP_21877182.1| ribonuclease III [Streptococcus mutans 21]
gi|450164294|ref|ZP_21881265.1| ribonuclease III [Streptococcus mutans B]
gi|450169338|ref|ZP_21882938.1| ribonuclease III [Streptococcus mutans SM4]
gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
gi|379132187|dbj|BAL68939.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|392603694|gb|AFM81858.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449149964|gb|EMB53742.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449150611|gb|EMB54371.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|449153291|gb|EMB56977.1| ribonuclease III [Streptococcus mutans NLML8]
gi|449156564|gb|EMB60031.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449163527|gb|EMB66630.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449165032|gb|EMB68062.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449167960|gb|EMB70809.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449171066|gb|EMB73743.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449174220|gb|EMB76725.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449175505|gb|EMB77915.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449178974|gb|EMB81208.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449183233|gb|EMB85225.1| ribonuclease III [Streptococcus mutans NVAB]
gi|449184921|gb|EMB86831.1| ribonuclease III [Streptococcus mutans N29]
gi|449189156|gb|EMB90833.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|449190861|gb|EMB92406.1| ribonuclease III [Streptococcus mutans A19]
gi|449194139|gb|EMB95504.1| ribonuclease III [Streptococcus mutans G123]
gi|449194726|gb|EMB96073.1| ribonuclease III [Streptococcus mutans U138]
gi|449198938|gb|EMC00026.1| ribonuclease III [Streptococcus mutans T4]
gi|449200451|gb|EMC01479.1| ribonuclease III [Streptococcus mutans N34]
gi|449205570|gb|EMC06309.1| ribonuclease III [Streptococcus mutans NLML4]
gi|449206170|gb|EMC06885.1| ribonuclease III [Streptococcus mutans NLML5]
gi|449207926|gb|EMC08574.1| ribonuclease III [Streptococcus mutans NLML9]
gi|449212320|gb|EMC12693.1| ribonuclease III [Streptococcus mutans N3209]
gi|449213161|gb|EMC13504.1| ribonuclease III [Streptococcus mutans M2A]
gi|449217589|gb|EMC17630.1| ribonuclease III [Streptococcus mutans W6]
gi|449219025|gb|EMC19011.1| ribonuclease III [Streptococcus mutans NV1996]
gi|449221970|gb|EMC21712.1| ribonuclease III [Streptococcus mutans SF1]
gi|449224014|gb|EMC23670.1| ribonuclease III [Streptococcus mutans SM6]
gi|449228279|gb|EMC27654.1| ribonuclease III [Streptococcus mutans ST1]
gi|449229529|gb|EMC28839.1| ribonuclease III [Streptococcus mutans U2A]
gi|449230588|gb|EMC29840.1| ribonuclease III [Streptococcus mutans ST6]
gi|449235188|gb|EMC34160.1| ribonuclease III [Streptococcus mutans 14D]
gi|449238994|gb|EMC37730.1| ribonuclease III [Streptococcus mutans 21]
gi|449242224|gb|EMC40825.1| ribonuclease III [Streptococcus mutans B]
gi|449247478|gb|EMC45758.1| ribonuclease III [Streptococcus mutans SM4]
gi|449250176|gb|EMC48250.1| ribonuclease III [Streptococcus mutans SA38]
gi|449253905|gb|EMC51838.1| ribonuclease III [Streptococcus mutans SA41]
gi|449259703|gb|EMC57223.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449261655|gb|EMC59123.1| ribonuclease III [Streptococcus mutans M230]
gi|449261943|gb|EMC59402.1| ribonuclease III [Streptococcus mutans R221]
Length = 231
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384462760|ref|YP_005675355.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|387818676|ref|YP_005679023.1| ribonuclease III [Clostridium botulinum H04402 065]
gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
Length = 234
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH RF VTID + + + KEAE A
Sbjct: 163 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSK-KEAEQNA 221
Query: 64 AKVALMSLS 72
A+ AL +L
Sbjct: 222 AREALKNLG 230
>gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00]
gi|442555847|ref|YP_007365672.1| ribonuclease III [Lawsonia intracellularis N343]
gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|441493294|gb|AGC49988.1| ribonuclease III [Lawsonia intracellularis N343]
Length = 233
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
+K +LQ TQ+ LP Y E GP H F+ V + DGQ + + LK AE E
Sbjct: 158 FKTRLQEETQRHIKGLPKYILEGMHGPEHEKIFEVCVELPDGQVFRASG--TGLKRAEQE 215
Query: 63 AAKVALMSL 71
AA++AL SL
Sbjct: 216 AARIALESL 224
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 72 SLDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQ 129
+LD Q S L YK LQE AQ++ P Y ++G H F V +G +V++
Sbjct: 153 ALDGVAQALSRLDYKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVYARA 212
Query: 130 GAKSKKQAEMSAAKVA---YMRLKEPNPSQGPALVSP 163
+SKK+AE +AA A R ++P P P P
Sbjct: 213 TGRSKKEAEQNAAHAALKWLARGEKPEPPDSPTDSGP 249
>gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
Length = 229
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 73 LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 132
LD + D K+ LQEL Q + + LP Y G + P F +T V +V +
Sbjct: 150 LDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDRGVGYQPRFEATCSVQEKVVGHGSGE 209
Query: 133 SKKQAEMSAAKVAYMRLKE 151
KK AE++AA+ A+ +L +
Sbjct: 210 RKKLAEIAAAEQAWSKLTD 228
>gi|450179695|ref|ZP_21886745.1| ribonuclease III [Streptococcus mutans 24]
gi|449248803|gb|EMC47022.1| ribonuclease III [Streptococcus mutans 24]
Length = 231
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|429730866|ref|ZP_19265512.1| ribonuclease III [Corynebacterium durum F0235]
gi|429147304|gb|EKX90334.1| ribonuclease III [Corynebacterium durum F0235]
Length = 255
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG-GEVFSGQGAKSKKQAEMSAA 142
+K LQ L + P Y T G H F + VG E+ +G+G SKKQAE AA
Sbjct: 180 WKTALQNLVSERRLPQPEYETSSVGPDHDLVFTAIARVGEAELGTGKGP-SKKQAEQQAA 238
Query: 143 KVAYMRLKE 151
+VA+ L++
Sbjct: 239 RVAFHALRD 247
>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
Length = 637
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 60 SVTPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 117
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 118 AAELALRSFVQFPNACQAHLAMGSGAGPSTDFTS 151
>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
Length = 231
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 62 EAAKVALMSLSLDKFQQDDSVL----YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFV 116
EA ++AL L DK D + YK +LQEL Q + + +P Y + G H F
Sbjct: 138 EAKRIALKYLK-DKIDNIDDLEELKDYKTLLQELFQSKFHIIPNYEILSEKGPDHNKKFE 196
Query: 117 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
V++ E+ SKK+AE +AA+ AY K
Sbjct: 197 IAVKLKEEIVGIGTGTSKKEAEKNAAREAYFLFK 230
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL------YKNVLQELAQKE 95
I G Y H F E A+ ++ L +K D++ + +K LQEL +
Sbjct: 139 IFGAIYREHGF---------ETARDVILRLFAEKI--DNATVSGRHLDWKTTLQELCAEL 187
Query: 96 AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNP 154
+PVY+ +G H TF + V G +KK AE AA+ A L+E P
Sbjct: 188 KAPMPVYSATSTGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLL 247
Query: 155 SQGPA 159
QG A
Sbjct: 248 VQGTA 252
>gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
Length = 634
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 106 QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
QSG HAP FV +VE+ G+ F G+G ++KK+A++ AA+
Sbjct: 39 QSGPPHAPEFVMSVEMNGQTFKGRG-RTKKEAKLRAAE 75
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 87 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
+L EL Y L ++GESHA FV V + G G G +SKK A++ AA+ A
Sbjct: 164 ILNELRPGLKYEL----VSETGESHAKNFVMAVTIDGRTCEGSG-RSKKLAKIRAAQAAL 218
Query: 147 MRLKE----PNPSQGPALVSPDI-----QAQAD 170
+ P+P + P L S + QA AD
Sbjct: 219 QEIFNYQFTPSPGKEPILSSEGVSSHQTQALAD 251
>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 234
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH RF VTID + + + KEAE A
Sbjct: 163 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRRFFTNVTIDNEIRGTGIGYSK-KEAEQNA 221
Query: 64 AKVALMSLS 72
A+ AL +L
Sbjct: 222 AREALKNLG 230
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 6 KNQLQSYTQKKNLPLPMY-SCEREGPPHASRFKCKVTIDG 44
K LQ + Q + LPLP+Y + E+ GP HA F +V ++G
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEG 199
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
K LQE AQ LPVY T +Q+G +HAP F V V G KSK+ AE AA
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLAA 218
>gi|338721506|ref|XP_001917073.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Equus caballus]
Length = 734
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L + L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 123 SVTPKNALVQLHELRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMR 180
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 181 AAELALRSFVQFPNACQAHLAMGGGAGPCTDFTS 214
>gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda
melanoleuca]
Length = 1006
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 423 SVTPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 480
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 481 AAELALRSFVQFPNACQAHLAMGSGAGPSTDFTS 514
>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|29427422|sp|P59476.1|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 226
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 KNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K +LQ Y Q K+LPLP Y E+ G H F I G ++ + ++AE EAA
Sbjct: 157 KTRLQEYLQSKHLPLPSYLVEQVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAEQEAA 216
Query: 65 KVALMSLSLD 74
+ AL+ L ++
Sbjct: 217 QNALIKLGIE 226
>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
Length = 232
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 73 LDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS-GQG 130
LD D +V K LQE Q++ L Y+ ++SG + P F V G+V + GQG
Sbjct: 151 LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESGTENNPAFHVDVAADGQVIADGQG 210
Query: 131 AKSKKQAEMSAAKVAYMRLK 150
+ SKKQAEM AA+ A +L+
Sbjct: 211 S-SKKQAEMQAAQRALKKLR 229
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVL------YKNVLQELAQKE 95
I G Y H F E A+ ++ L +K D++ + +K LQEL +
Sbjct: 139 IFGAIYREHGF---------ETARDVILRLFAEKI--DNATVSGRHLDWKTTLQELCAEL 187
Query: 96 AYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNP 154
+PVY+ +G H TF + V G +KK AE AA+ A L+E P
Sbjct: 188 KAPMPVYSATSTGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRETPLL 247
Query: 155 SQGPA 159
QG A
Sbjct: 248 VQGTA 252
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 138
++V +K LQE+ Q++ L Y+ ++SG +H+ F + V V G++ ++KKQAE
Sbjct: 156 ETVDHKTQLQEIVQRDRDVLIQYDILEESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAE 215
Query: 139 MSAAKVAYMRL 149
+AAK A +L
Sbjct: 216 QNAAKEAINKL 226
>gi|386775221|ref|ZP_10097599.1| RNAse III [Brachybacterium paraconglomeratum LC44]
Length = 250
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K+ LQE+A E + VY +SG H TF +TV V G V + SKK AE++AA+
Sbjct: 174 FKSRLQEIAAAEGKDV-VYALTESGLEHQKTFTATVTVEGVVTARGDGASKKDAELAAAQ 232
>gi|348541265|ref|XP_003458107.1| PREDICTED: double-stranded RNA-specific editase B2-like
[Oreochromis niloticus]
Length = 1080
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 104 TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE-PNPSQGPALVS 162
T ++G HAP F VEV G F G+G +KKQA+M AA+ A + PN SQ A +
Sbjct: 463 TSKTGPLHAPVFSVAVEVNGFHFEGRGP-TKKQAKMRAAEQALQSFIQFPNTSQAHASMG 521
Query: 163 PDIQAQADYSS 173
D+++
Sbjct: 522 NFTSTPVDFTA 532
>gi|449876824|ref|ZP_21782982.1| ribonuclease III [Streptococcus mutans S1B]
gi|449976057|ref|ZP_21816088.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449176047|gb|EMB78414.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449251723|gb|EMC49726.1| ribonuclease III [Streptococcus mutans S1B]
Length = 231
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422346389|ref|ZP_16427303.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|422874639|ref|ZP_16921124.1| ribonuclease III [Clostridium perfringens F262]
gi|22654058|sp|Q8XJN8.1|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|373225934|gb|EHP48261.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|380304280|gb|EIA16569.1| ribonuclease III [Clostridium perfringens F262]
Length = 237
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+DK ++ +L +K LQE+ QK VYN K G H F + + + E+ GQG
Sbjct: 149 IDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIM-GQG 207
Query: 131 AK-SKKQAEMSAAKVAYMRLKE 151
SKK++E +AAK A RL E
Sbjct: 208 VGFSKKESEQNAAKAALQRLGE 229
>gi|348169250|ref|ZP_08876144.1| ribonuclease III [Saccharopolyspora spinosa NRRL 18395]
Length = 249
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY 47
+K LQ T L +P Y E +GP H F V + GQTY
Sbjct: 170 WKTSLQELTASTGLGVPEYRVEEQGPDHRKEFSAYVAVGGQTY 212
>gi|405374858|ref|ZP_11029152.1| Ribonuclease III [Chondromyces apiculatus DSM 436]
gi|397086526|gb|EJJ17629.1| Ribonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 260
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE+A + P Y +SG H+ F + +G F+ +SKK+AE SAA
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGDTAFARASGRSKKEAEQSAA 232
Query: 143 KVAYMRLKE 151
+ +L+E
Sbjct: 233 QATLDKLQE 241
>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
Length = 248
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q + P Y T SG H FV+ V +V + +SKK+AE SAA
Sbjct: 172 YKSRLQELIQAQMQMTPRYRITNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAA 231
Query: 143 KVA 145
K A
Sbjct: 232 KAA 234
>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
Length = 233
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K LQELA + +P Y + SG H+ F +++ + +V + SKKQAEM+AA
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALE 223
Query: 145 AYMRLK 150
A+ L+
Sbjct: 224 AWTILQ 229
>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
Length = 243
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 36 FKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKE 95
F + +DG ++ F L E + LM F + D YK++LQE QK+
Sbjct: 135 FVGALYLDGGFLKASAFVVELFEVH-----IRLM------FNRGDFKDYKSLLQEYVQKK 183
Query: 96 AYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 145
P Y K+ G H F + V + S KSKK+AEM AA++A
Sbjct: 184 YKISPNYRLAKELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMA 234
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQEL Q+ Y+ T Q G H TF++ V++ G + G+G SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQITYSVTDQFGPDHNKTFITEVKINGAI-QGRGKGHSKKEAEQNA 225
Query: 142 AKVAYMRLK 150
AK A LK
Sbjct: 226 AKNALNNLK 234
>gi|344268337|ref|XP_003406017.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Loxodonta africana]
Length = 517
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 9 LQSYTQK-KNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKV 66
L Y K KN+P+ Y CER + H F +VT+ T + K A+H AA+
Sbjct: 200 LHEYGMKTKNIPV--YECERSDVQIHVPTFTFRVTVGDITCTGEGT--SKKLAKHRAAEA 255
Query: 67 ALMSLSL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYN-TKQSGES 110
A+ L D D S KN LQELA + LP Y +++ G +
Sbjct: 256 AINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPA 315
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
H + + + + +G+GA SKKQA+ +AA+
Sbjct: 316 HKREYTTICRLESFMETGKGA-SKKQAKRNAAE 347
>gi|410963123|ref|XP_003988115.1| PREDICTED: double-stranded RNA-specific editase B2 [Felis catus]
Length = 729
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMS 140
SV KN L +L L Q+G HAP F VEV G F G G +KK+A+M
Sbjct: 117 SVAPKNALVQLHDLRP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTG-PTKKKAKMR 174
Query: 141 AAKVAYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
AA++A + PN Q + D++S
Sbjct: 175 AAELALRSFVQFPNACQAQLAMGGGAGPSTDFTS 208
>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
Length = 241
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 73 LDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG 130
+DK ++ +L +K LQE+ QK VYN K G H F + + + E+ GQG
Sbjct: 153 IDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIM-GQG 211
Query: 131 AK-SKKQAEMSAAKVAYMRLKE 151
SKK++E +AAK A RL E
Sbjct: 212 VGFSKKESEQNAAKAALQRLGE 233
>gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus]
Length = 515
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y ++L Y Q + + GPPH RF +V ID + FP K +
Sbjct: 8 FYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE------FPEAKGRSKQE 61
Query: 64 AKVALMSLSLDKFQQDDSV--------------LYKNVLQELAQKEAYALPVYNTKQSGE 109
A+ A L++D ++ V Y ++ AQK+ ++ Y +
Sbjct: 62 ARNAAAKLAVDILDNENKVDCHTSASEQGLFVGNYIGLVNSFAQKKKLSVN-YEQCEPNS 120
Query: 110 SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQG 157
F+ ++G ++ K++A+ AAK AY + LK P + G
Sbjct: 121 ELPQRFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKLLKSPPKTAG 169
>gi|356511271|ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1180
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YKN LQ + + P Y TK+ + F STV G F GQ SKK AE SAA
Sbjct: 1083 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRSTVIFNGLNFVGQPCSSKKLAEKSAAA 1139
Query: 144 VAYMRLK 150
A + LK
Sbjct: 1140 EALLWLK 1146
>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
Length = 250
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 52 FFPTLKEAEHEAAKVALMSLSLDKFQQ--DDSVL--YKNVLQELAQKEAYALPVYNTKQS 107
F E E A+ +++L +K DS+ +K +LQE A + +P Y +
Sbjct: 140 FGAIFLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASFT 199
Query: 108 GESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
G H F +T + G+V +GQG +KK AE AAK A L+E N ++
Sbjct: 200 GPDHDRFFTATAIIDGKVVGTGQG-HNKKAAEQLAAKQAVTVLREQNIAR 248
>gi|374849967|dbj|BAL52968.1| ribonuclease III [uncultured candidate division OP1 bacterium]
gi|374856382|dbj|BAL59236.1| ribonuclease III [uncultured candidate division OP1 bacterium]
Length = 230
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE AQ++ + PVY S G+ H F VEV G G+G +SKK AE AA
Sbjct: 160 YKTLLQEWAQQQ-HQKPVYTLVASEGQDHCKEFTVRVEVNGFSALGKG-RSKKAAEQEAA 217
Query: 143 KVAYMRL 149
+ Y +L
Sbjct: 218 RQLYTQL 224
>gi|420460167|ref|ZP_14958966.1| ribonuclease III [Helicobacter pylori Hp A-27]
gi|393077269|gb|EJB78018.1| ribonuclease III [Helicobacter pylori Hp A-27]
Length = 239
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YYALQKLKE 237
>gi|389866045|ref|YP_006368286.1| ribonuclease 3 [Modestobacter marinus]
gi|388488249|emb|CCH89822.1| Ribonuclease 3 [Modestobacter marinus]
Length = 242
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + PVY+ + +G HA TF + V + G++ ++KK AE AA+
Sbjct: 166 WKTSLQELGAGQGLGAPVYDVEDTGPDHAKTFTAVVSLAGQIRGKGTGRTKKAAEQEAAE 225
Query: 144 VAYMRLKEPNPSQGPA 159
VA+ L GPA
Sbjct: 226 VAWRSLTSATDG-GPA 240
>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
Length = 241
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQE+ Q+ + YN K+ G H TF V ++ KSKK+AE +AA
Sbjct: 168 YKTALQEMLQRISPDRITYNVIKEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAA 227
Query: 143 KVAYMRLKEPN 153
K A LK+ N
Sbjct: 228 KAAIRFLKDRN 238
>gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7]
gi|22654066|sp|Q92JB0.1|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7]
Length = 227
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HTIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
Length = 226
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 85 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGG--EVFSGQGAKSKKQAEMSA 141
K LQE Q + ++LP+Y+ Q GE+H F ++ G E+ G GA S+++AE A
Sbjct: 157 KTRLQEYLQSKHFSLPIYSIGQIYGEAHNQIFTIYCKIDGLSELLIGIGA-SRRKAEQDA 215
Query: 142 AKVAYMRLK 150
A+ A +RL+
Sbjct: 216 AQNALIRLE 224
>gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4]
gi|387153704|ref|YP_005702640.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4]
gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
Length = 228
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
YK+QLQ TQK P+Y+ GP H +F +V + DG +E+ P++K AE
Sbjct: 160 YKSQLQELTQKLFRDRPVYTLLGSSGPEHDKQFDVRVVLPDGTVFEATG--PSMKRAEQM 217
Query: 63 AAKVALMSL 71
AA A+ +L
Sbjct: 218 AAARAVATL 226
>gi|408906224|emb|CCM11713.1| Ribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 222
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK+ LQEL Q+ +P Y K +SG HA F + + ++++ AKSKK+A+ A
Sbjct: 151 YKSALQELTQERFKTIPTYVLKSESGPDHAKQFEMQIFILSKLYATCTAKSKKEAQQLCA 210
Query: 143 KVAYMRL 149
K A +L
Sbjct: 211 KEALAQL 217
>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
gi|238690159|sp|B4RCU4.1|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
Length = 238
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 KNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K QLQ + Q LPLP Y +EGPPHA F +V + G E + + + AE AA
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGE-GRSRQAAEKAAA 221
Query: 65 KVALM 69
+ L+
Sbjct: 222 QCMLL 226
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 42 IDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPV 101
IDG + FF LK + E A+ LD+ + D K LQE Q LP
Sbjct: 132 IDGGLETARAFF--LKFWDEEFAR-------LDEPRAKDP---KTQLQEWVQGMGLPLPT 179
Query: 102 YN-TKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156
Y Q G HAP+F V+V G G+G +S++ AE +AA+ ++ + P P +
Sbjct: 180 YEIVSQEGPPHAPSFTVEVQVAGFGAERGEG-RSRQAAEKAAAQCMLLKREGPEPGK 235
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFP----TLKEA 59
YK+QLQ Y QK + P Y E +GP H FK I SHQF P T K+A
Sbjct: 162 YKSQLQQYAQKNHGTTPTYHLLEEKGPDHRKCFKILARIG-----SHQFPPAWGQTKKDA 216
Query: 60 EHEAAKVALMSL 71
E AA+ AL L
Sbjct: 217 EQRAAQNALSVL 228
>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain-containing protein
[Oceanithermus profundus DSM 14977]
gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus
DSM 14977]
Length = 165
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAK 143
K+ L Q + LP + T+ +G P F+S V + GE+ +GQG +SK++AE AA+
Sbjct: 5 KSALNAYCQSKNLPLPKFETRGTGTEDDPLFISDVSLNGELLATGQG-RSKREAEKVAAE 63
Query: 144 VAYMRLK 150
+A L+
Sbjct: 64 LALELLR 70
>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium hydrogeniformans]
gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium hydrogeniformans]
Length = 238
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVG-GEVFSGQGAKSKKQAEMSA 141
YK +LQE+ Q++ P Y + G H TF+ V++ + SGQG+ SKK+AE A
Sbjct: 167 YKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIVAVKLKENSLGSGQGS-SKKEAEQEA 225
Query: 142 AKVAYMRL 149
AK A +L
Sbjct: 226 AKFALHKL 233
>gi|208690905|gb|ACI31228.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Hylobates alibarbis]
Length = 551
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTID--------GQTYESHQFFPT 55
+ +L +Y QK+ + L GPPH RF +V ID G++ + +
Sbjct: 9 FFMEELNTYRQKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRSKKEAKNAAA 68
Query: 56 LKEAE---HEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
E E V+ + L+ + S+ Y ++ +AQK+ + N +Q G
Sbjct: 69 KLAVEILNKEKKGVSPLVLTTTNSSEGLSIGNYMGLINRIAQKKRLTV---NYEQCGWGM 125
Query: 112 APT--FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPDIQAQ 168
T F ++G + +S +K++A+ AAK+AY++ L E + ++ S A
Sbjct: 126 HGTKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLAYVQILSEDTSVKSDSMSSGSFAAT 185
Query: 169 ADYSSSSL 176
D SSSL
Sbjct: 186 CDSQSSSL 193
>gi|385228416|ref|YP_005788349.1| ribonuclease III [Helicobacter pylori Puno120]
gi|344334854|gb|AEN15298.1| ribonuclease III [Helicobacter pylori Puno120]
Length = 238
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 168 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 143 KVAYMRLKEP 152
A +LKE
Sbjct: 228 YYALQKLKEA 237
>gi|449497595|ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1231
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN LQ L + + P YNTKQ + F STV G F GQ SKK AE AA
Sbjct: 1118 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1174
Query: 145 AYMRLKEPNPSQGPAL 160
A + L+ S A+
Sbjct: 1175 ALLWLQGETHSSSQAI 1190
>gi|340355030|ref|ZP_08677724.1| ribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622827|gb|EGQ27340.1| ribonuclease III [Sporosarcina newyorkensis 2681]
Length = 255
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNL-PLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK++LQ Q+KN PL E +GP HA +F V +D Q + KEAE EA
Sbjct: 180 YKSRLQELVQQKNHGPLQYEVVEEKGPAHAKKFVTVVNLDDQQL-GKGIGKSKKEAEQEA 238
Query: 64 AKVALMSL 71
A+ A+ L
Sbjct: 239 ARRAIEQL 246
>gi|450050469|ref|ZP_21840282.1| ribonuclease III [Streptococcus mutans NFSM1]
gi|449202561|gb|EMC03468.1| ribonuclease III [Streptococcus mutans NFSM1]
Length = 231
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + L Y K+SG +HA F V + E S KSKK AE AA
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNYEKLSSGTGKSKKLAEQEAA 220
Query: 143 KVAYMRLK 150
K A +L+
Sbjct: 221 KNALEKLQ 228
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK +LQE Q+E VY +SG H F V + G+ + KSKK+AE +AA
Sbjct: 176 YKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAYGSGTGKSKKEAEQNAA 235
Query: 143 KV 144
+V
Sbjct: 236 QV 237
>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
Length = 239
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P+Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPIYQLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
Length = 342
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 6 KNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKV---TIDGQTYESHQFFPTLKEAEH 61
K +L KK P P Y+ E+E GP H ++ C V T+DG Y +KEA++
Sbjct: 267 KRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCSVQIATVDGVLYMRGDEKMRVKEADN 326
Query: 62 EAAKVALMSL 71
AA + + +L
Sbjct: 327 SAASLMIRAL 336
>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
Length = 236
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 85 KNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 142
K+ LQE AQ + LP Y ++G HAPTF V V G E + QG +S+++AE +AA
Sbjct: 168 KSALQEWAQAKGRPLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQG-RSRQEAEKAAA 226
Query: 143 KVAYMR 148
R
Sbjct: 227 TALLKR 232
>gi|379011975|ref|YP_005269787.1| ribonuclease III [Acetobacterium woodii DSM 1030]
gi|375302764|gb|AFA48898.1| ribonuclease III [Acetobacterium woodii DSM 1030]
Length = 220
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK +LQ Y QK N + Y +R EGP H F + +G SH + KE E +A
Sbjct: 151 YKTELQEYIQKNNDNVIEYILDRSEGPEHNKTFYINLIFNGDCV-SHGIGKSKKEGEQDA 209
Query: 64 AK 65
AK
Sbjct: 210 AK 211
>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
Length = 228
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 6 KNQLQSYTQKKNLPLPMY-SCEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHEA 63
K LQ + Q + LP P Y + REGP HA +F+ V + G+T E+ + + AE A
Sbjct: 159 KTALQEWAQARGLPPPRYETLGREGPDHAPQFRIAVVLASGETEEAQA--GSKRNAEQAA 216
Query: 64 AKVALMSL 71
AK L L
Sbjct: 217 AKALLERL 224
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 58 EAEHEAAKVALMSLSLDKFQ--QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 114
+A E A+ ++ L + Q +D+ K LQE AQ P Y T + G HAP
Sbjct: 130 DAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLGREGPDHAPQ 189
Query: 115 F-VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150
F ++ V GE Q A SK+ AE +AAK RL+
Sbjct: 190 FRIAVVLASGETEEAQ-AGSKRNAEQAAAKALLERLE 225
>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
Length = 258
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
Y+ LQE +E Y Q+G + P + + V VGG F A++K+ A M AAK
Sbjct: 190 YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTVGGIPFGEGEARTKQGAAMIAAK 249
Query: 144 VAYMRLK 150
A RL+
Sbjct: 250 EALARLR 256
>gi|359685221|ref|ZP_09255222.1| ribonuclease III [Leptospira santarosai str. 2000030832]
Length = 238
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK QLQ Y+QK LP+Y + E GP H+ F+ V I + +E+ + + K AE A
Sbjct: 167 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDK-WEASGYGASKKTAEQNA 225
Query: 64 AK 65
AK
Sbjct: 226 AK 227
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 141
YK LQE +QK +LPVY K +SG H+ F +V + + SG GA SKK AE +A
Sbjct: 167 YKTQLQEYSQKHFKSLPVYRIKGESGPDHSKMFQVSVRIRDKWEASGYGA-SKKTAEQNA 225
Query: 142 AKVAYMRLKE 151
AK + ++++
Sbjct: 226 AKELFNQIRK 235
>gi|324518074|gb|ADY46997.1| Protein SON [Ascaris suum]
gi|324540941|gb|ADY49607.1| Protein SON, partial [Ascaris suum]
Length = 140
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 9 LQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVAL 68
L KK+ P P ++C GP + RF K ++G YE + K + + V L
Sbjct: 68 LMELCSKKHWPPPQFTCIESGPSNNRRFTWKAVVNGVEYEPIASSASKKTGKAQVCAVVL 127
Query: 69 MSLSLDKFQQDDSVLY 84
SL L Q+D L+
Sbjct: 128 QSLGL---MQNDQALW 140
>gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
gi|81404810|sp|Q72C44.1|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
Length = 253
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 5 YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHE 62
YK+QLQ TQK P+Y+ GP H +F +V + DG +E+ P++K AE
Sbjct: 185 YKSQLQELTQKLFRDRPVYTLLGSSGPEHDKQFDVRVVLPDGTVFEATG--PSMKRAEQM 242
Query: 63 AAKVALMSL 71
AA A+ +L
Sbjct: 243 AAARAVATL 251
>gi|350273169|ref|YP_004884482.1| ribonuclease III [Rickettsia japonica YH]
gi|348592382|dbj|BAK96343.1| ribonuclease III [Rickettsia japonica YH]
Length = 227
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HTIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|449439551|ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1168
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN LQ L + + P YNTKQ + F STV G F GQ SKK AE AA
Sbjct: 1071 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1127
Query: 145 AYMRLKEPNPSQGPAL 160
A + L+ S A+
Sbjct: 1128 ALLWLQGETHSSSQAI 1143
>gi|386760965|ref|YP_006234600.1| ribonuclease III [Helicobacter cinaedi PAGU611]
gi|385145981|dbj|BAM11489.1| ribonuclease III [Helicobacter cinaedi PAGU611]
Length = 242
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 55 TLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAP 113
LK E AK+ L SL D YK LQEL Q +P Y +SG H
Sbjct: 141 VLKLLEQNYAKIDLRSLFTD---------YKTALQELTQAIFGEIPTYTLVSESGPDHQK 191
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+F + V G ++ SKK A+ +A++AY ++
Sbjct: 192 SFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEKI 227
>gi|363540236|ref|YP_004894369.1| mg318 gene product [Megavirus chiliensis]
gi|350611401|gb|AEQ32845.1| hypothetical protein [Megavirus chiliensis]
Length = 246
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 142
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 143 KVA 145
VA
Sbjct: 65 MVA 67
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKV--TIDGQTY 47
KN+LQ Y QK LP+P+Y+ GP H + + TI+GQ +
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEF 48
>gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|396078041|dbj|BAM31417.1| ribonuclease III [Helicobacter cinaedi ATCC BAA-847]
Length = 242
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 55 TLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAP 113
LK E AK+ L SL D YK LQEL Q +P Y +SG H
Sbjct: 141 VLKLLEQNYAKIDLRSLFTD---------YKTALQELTQAIFGEIPTYTLVSESGPDHQK 191
Query: 114 TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+F + V G ++ SKK A+ +A++AY ++
Sbjct: 192 SFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEKI 227
>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 234
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 71 LSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGG-EVFSG 128
L+ D +D YK LQE+ QK+ A +Y+ G SH TFV V V G E+ G
Sbjct: 158 LTADGIDRD----YKTRLQEVVQKDGPAEILYDQVSAEGPSHNRTFVMRVLVNGNELGKG 213
Query: 129 QGAKSKKQAEMSAAKVAYMRLK 150
+G ++KK+AE AA+ A L+
Sbjct: 214 RG-RTKKEAEQRAAREALKALR 234
>gi|425701190|gb|AFX92352.1| hypothetical protein CE11_00322 [Megavirus courdo11]
Length = 246
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 142
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 143 KVA 145
VA
Sbjct: 65 MVA 67
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKV--TIDGQTY 47
KN+LQ Y QK LP+P+Y+ GP H + + TI+GQ +
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEF 48
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQEL Q+ Y+ T Q G H TF++ V++ G GQG SKK+AE +A
Sbjct: 167 YKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFITEVKINGAT-QGQGKGHSKKEAEQNA 225
Query: 142 AKVAYMRLK 150
AK A LK
Sbjct: 226 AKDALNNLK 234
>gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
Length = 179
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|383482964|ref|YP_005391878.1| ribonuclease III [Rickettsia montanensis str. OSU 85-930]
gi|378935318|gb|AFC73819.1| ribonuclease III [Rickettsia montanensis str. OSU 85-930]
Length = 227
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus]
gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96]
gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS]
Length = 190
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|348025313|ref|YP_004765117.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
gi|341821366|emb|CCC72290.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
Length = 238
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK + QE Q+E Y +S G H TF V+V G+V K+KK AE AA
Sbjct: 167 YKTLFQEYVQQEGPQHIEYELCRSEGPDHDKTFYMEVKVNGKVLGEGSGKTKKDAEQHAA 226
Query: 143 KVAYMRLK 150
A M+LK
Sbjct: 227 HTALMKLK 234
>gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan]
Length = 115
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 60 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 107
>gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1172
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
K+ LQ L + YA P Y TKQ S F STVE G GQ +KK AE AA
Sbjct: 1085 KSQLQTLITRAGYAAPTYKTKQLKNSQ---FRSTVEFNGMQIMGQPCNNKKSAEKDAAAE 1141
Query: 145 AYMRLKEPNPSQGPALVS 162
A +R GP ++
Sbjct: 1142 A-LRWLMGETRTGPEYIN 1158
>gi|448825268|ref|YP_007418199.1| hypothetical protein LBA_00303 [Megavirus lba]
gi|444236453|gb|AGD92223.1| hypothetical protein LBA_00303 [Megavirus lba]
Length = 265
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 142
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 24 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 83
Query: 143 KVA 145
VA
Sbjct: 84 MVA 86
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKV--TIDGQTY 47
KN+LQ Y QK LP+P+Y+ GP H + + TI+GQ +
Sbjct: 24 KNKLQEYFQKNKLPIPIYNSTSSGPDHNKIWTSSIVATINGQEF 67
>gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16]
gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16]
gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus]
gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus]
gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus]
gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus]
gi|451327734|gb|AGF36606.1| double-stranded RNA binding protein [Monkeypox virus]
gi|451327942|gb|AGF36813.1| double-stranded RNA binding protein [Monkeypox virus]
Length = 153
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 98 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 145
>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
activator A [Rattus norvegicus]
gi|81908679|sp|Q4V8C7.1|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A; AltName: Full=Protein
activator of the interferon-induced protein kinase;
AltName: Full=Protein kinase, interferon-inducible
double stranded RNA-dependent activator
gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
activator [Rattus norvegicus]
Length = 313
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 13 TQKKNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL 71
T+ KN+P +Y CER + H F +VT+ T + K A+H AA+ A+ L
Sbjct: 44 TKTKNIP--VYECERSDVQVHVPTFTFRVTVGDITCTGEG--TSKKLAKHRAAEAAINIL 99
Query: 72 SL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYNTKQ-SGESHAPTF 115
D D S KN LQELA + LP Y Q G +H +
Sbjct: 100 KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREY 159
Query: 116 VSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154
+ + + +G+GA SKKQA+ +AA+ + +P
Sbjct: 160 TTICRLESFMETGKGA-SKKQAKRNAAEKFLAKFSNISP 197
>gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246]
gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5]
gi|374318897|ref|YP_005065395.1| Ribonuclease III [Rickettsia slovaca 13-B]
gi|378720829|ref|YP_005285716.1| ribonuclease III [Rickettsia rickettsii str. Colombia]
gi|378722183|ref|YP_005287069.1| ribonuclease III [Rickettsia rickettsii str. Arizona]
gi|378723541|ref|YP_005288425.1| ribonuclease III [Rickettsia rickettsii str. Hauke]
gi|379016909|ref|YP_005293144.1| ribonuclease III [Rickettsia rickettsii str. Brazil]
gi|379017329|ref|YP_005293563.1| ribonuclease III [Rickettsia rickettsii str. Hino]
gi|379018660|ref|YP_005294894.1| ribonuclease III [Rickettsia rickettsii str. Hlp#2]
gi|379711897|ref|YP_005300236.1| ribonuclease III [Rickettsia philipii str. 364D]
gi|383312125|ref|YP_005364926.1| ribonuclease III [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|383750794|ref|YP_005425895.1| ribonuclease III [Rickettsia slovaca str. D-CWPP]
gi|166991034|sp|A8GQT8.1|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043343|sp|B0BW84.1|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259646551|sp|C3PMF3.1|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246]
gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5]
gi|360041445|gb|AEV91827.1| Ribonuclease III [Rickettsia slovaca 13-B]
gi|376325433|gb|AFB22673.1| ribonuclease III [Rickettsia rickettsii str. Brazil]
gi|376325853|gb|AFB23092.1| ribonuclease III [Rickettsia rickettsii str. Colombia]
gi|376327207|gb|AFB24445.1| ribonuclease III [Rickettsia rickettsii str. Arizona]
gi|376328542|gb|AFB25779.1| ribonuclease III [Rickettsia philipii str. 364D]
gi|376329894|gb|AFB27130.1| ribonuclease III [Rickettsia rickettsii str. Hino]
gi|376331240|gb|AFB28474.1| ribonuclease III [Rickettsia rickettsii str. Hlp#2]
gi|376332556|gb|AFB29789.1| ribonuclease III [Rickettsia rickettsii str. Hauke]
gi|378930785|gb|AFC69294.1| ribonuclease III [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|379773808|gb|AFD19164.1| ribonuclease III [Rickettsia slovaca str. D-CWPP]
Length = 227
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|417931381|ref|ZP_12574749.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
gi|340776120|gb|EGR98170.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
Length = 246
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K VLQE + + P Y SG H + + V G++ + +KK+AE AA+
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGKLHAAYTGHNKKEAEQGAAR 232
Query: 144 VAYMRLK 150
+A LK
Sbjct: 233 LAVCALK 239
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
+K LQ Y + P Y GP H R+ + +DG+ + ++ KEAE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGKLHAAYTGHNK-KEAEQGAA 231
Query: 65 KVALMSLSLD 74
++A+ +L D
Sbjct: 232 RLAVCALKPD 241
>gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5]
gi|189043342|sp|A8F0M2.1|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5]
Length = 227
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus]
gi|325558660|gb|ADZ30038.1| double-stranded RNA binding protein [Cowpox virus]
Length = 194
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 139 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 186
>gi|325558443|gb|ADZ29822.1| double-stranded RNA binding protein [Cowpox virus]
gi|325558875|gb|ADZ30252.1| double-stranded RNA binding protein [Cowpox virus]
gi|325559087|gb|ADZ30463.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus]
gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus]
gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF+ KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFNKADGKSKRDAKNNAAKLAVDKL 184
>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
Length = 232
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 41 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDD---SVLYKNVLQELAQKEAY 97
TI G +E+ L + EA K L + + K + D + YK LQEL Q
Sbjct: 116 TILGDLFEAF-LGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVIDYKTKLQELLQVNGD 174
Query: 98 ALPVYN-TKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAY 146
VY T +SG +HA F V V G V GQG +SKK AE AAK A+
Sbjct: 175 VEIVYQVTSESGPAHAKEFAVAVSVDGRTVGQGQG-RSKKLAEQEAAKNAF 224
>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
gi|386859939|ref|YP_006272645.1| ribonuclease 3 [Borrelia crocidurae str. Achema]
gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
gi|384934820|gb|AFI31493.1| Ribonuclease 3 [Borrelia crocidurae str. Achema]
Length = 243
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 76 FQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSK 134
F + D YK++LQE QK+ P Y K+ G H F + V + S KSK
Sbjct: 164 FNRGDFKDYKSLLQEYVQKKYKISPSYKLAKELGPDHNKIFCVELYVNDKFVSNGKGKSK 223
Query: 135 KQAEMSAAKVA 145
K+AEM AA++A
Sbjct: 224 KEAEMIAAEMA 234
>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
Length = 917
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 87 VLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 146
VL E +Q+ + + T Q G SH P F+ V+VG +F A SKK A AA+ A
Sbjct: 747 VLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAV 806
Query: 147 MRL 149
L
Sbjct: 807 KEL 809
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 60 EHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVST 118
E+ K+ L SL +D YK LQE+ Q +P Y +SG H +F
Sbjct: 146 EYNYIKIDLDSLFMD---------YKTALQEITQAFYGEIPTYTLISESGPDHKKSFEIA 196
Query: 119 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ V G+ ++ SKK+A+ +A++AY +L
Sbjct: 197 LSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227
>gi|395732538|ref|XP_002812678.2| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
stranded RNA-dependent protein kinase activator A [Pongo
abelii]
Length = 532
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 9 LQSYTQK-KNLPLPMYSCER-EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKV 66
L Y K KN+P+ Y CER + H F +VT+ T + K A+H AA+
Sbjct: 258 LHEYGMKTKNIPV--YECERSDVQIHVPTFTFRVTVGDITCTGEGT--SKKLAKHRAAEA 313
Query: 67 ALMSLSL---------DKFQQDDSVLYKN------VLQELAQKEAYALPVYN-TKQSGES 110
A+ L D D S KN LQELA + LP Y +++ G +
Sbjct: 314 AINILKANASICFAVPDPXMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPA 373
Query: 111 HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
H + + + + +G+GA SKKQA+ +AA+
Sbjct: 374 HKREYTTICRLESFMETGKGA-SKKQAKRNAAE 405
>gi|379713230|ref|YP_005301568.1| ribonuclease III [Rickettsia massiliae str. AZT80]
gi|376333876|gb|AFB31108.1| ribonuclease III [Rickettsia massiliae str. AZT80]
Length = 227
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|374853052|dbj|BAL55970.1| ribonuclease III [uncultured planctomycete]
Length = 251
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K++LQ LAQK+ P Y + G H+ F+ VG + F +SKK+AE AA
Sbjct: 175 KSLLQHLAQKQHGVTPKYEVVDEKGPEHSKCFLVAAVVGEQRFPPAWGRSKKEAEQKAAA 234
Query: 144 VAYMRLKE---PNPSQ 156
A RL P PSQ
Sbjct: 235 NALARLHHQPLPYPSQ 250
>gi|325514074|gb|ADZ24068.1| double-stranded RNA binding protein [Cowpox virus]
Length = 189
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus]
Length = 179
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
15579]
gi|187772577|gb|EDU36379.1| ribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 237
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH +F VTID + + + KEAE A
Sbjct: 166 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRKFFTNVTIDNEVRGTGIGYSK-KEAEQNA 224
Query: 64 AKVALMSLS 72
AK AL +L
Sbjct: 225 AKEALKNLG 233
>gi|383481096|ref|YP_005390011.1| ribonuclease III [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378933435|gb|AFC71938.1| ribonuclease III [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 227
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 244
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 6 KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 64
K++LQ Q K PLP Y REGPPH+ F+ ++ + G S + ++KEAE +AA
Sbjct: 170 KSELQQILQIKGEPLPEYRIMSREGPPHSPSFEVELYVSGVLLSSGR-GRSIKEAEVQAA 228
>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
Length = 746
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 128 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 185
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + D++S
Sbjct: 186 ALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 215
>gi|373447962|gb|AEY73345.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|208690903|gb|ACI31227.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Miopithecus talapoin talapoin]
Length = 550
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 15/192 (7%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-----------ESHQF 52
Y +L Y QK+ + GPPH RF +V D + + ++
Sbjct: 9 FYMEELNKYRQKQGITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRSKKEAKNAAA 68
Query: 53 FPTLKEAEHEAAKVALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESH 111
+ E+ V+ SL+ + S+ Y V+ +AQK+ L V + + H
Sbjct: 69 KLAVDILNKESKSVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKK--RLTVNYEQCTLGVH 126
Query: 112 APT-FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQAD 170
P F ++G + +S +K++A+ AAK+A + + E + ++ S A D
Sbjct: 127 GPEGFHYKCKIGDKEYSIGTGSTKQEAKQLAAKLALLEISEETSVKPDSMSSGSFAATCD 186
Query: 171 YSSSSLQSNVTA 182
S+ L +N+ A
Sbjct: 187 SQSNPLVNNLLA 198
>gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449628|gb|AEY75004.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|137621|sp|P21081.1|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25
gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen]
gi|373447483|gb|AEY72868.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus]
gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus]
gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus]
gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus]
gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara]
gi|373447720|gb|AEY73104.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448675|gb|AEY74055.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449146|gb|AEY74524.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373449387|gb|AEY74764.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|325557799|gb|ADZ29181.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
gi|33112433|sp|P97616.1|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
norvegicus]
Length = 746
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKV 144
KN L +L + + L Q+G HAP F VEV G F G G +KK+A+M AA++
Sbjct: 128 KNALVQLHELKP-GLQYRMVSQTGPVHAPVFAVAVEVNGLTFEGTGP-TKKKAKMRAAEM 185
Query: 145 AYMRLKE-PNPSQGPALVSPDIQAQADYSS 173
A + PN Q + D++S
Sbjct: 186 ALKSFVQFPNAFQAHLAMGSSTSPCTDFTS 215
>gi|373448203|gb|AEY73585.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448434|gb|AEY73815.1| double-stranded RNA binding protein [Vaccinia virus]
gi|373448916|gb|AEY74295.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|424827547|ref|ZP_18252334.1| ribonuclease III [Clostridium sporogenes PA 3679]
gi|365979987|gb|EHN16028.1| ribonuclease III [Clostridium sporogenes PA 3679]
Length = 234
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 5 YKNQLQSYTQKKN-LPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK LQ Q+ N L + ++EGPPH +F VTID + + + KEAE A
Sbjct: 163 YKTTLQEIVQQNNDLTINYELLKQEGPPHRRKFFTNVTIDNEVRGTGIGYSK-KEAEQNA 221
Query: 64 AKVALMSLS 72
AK AL +L
Sbjct: 222 AKEALKNLG 230
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSA 141
YK LQEL Q+E+ + Y G HA F V++ G + GQG +SKK+AE +A
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNG-IPIGQGRGRSKKEAEQNA 213
Query: 142 AKVAYMRLK 150
AK A +LK
Sbjct: 214 AKAAIEKLK 222
>gi|385246973|gb|AFI49526.1| double-stranded RNA-binding protein [Buffalopox virus]
gi|385246975|gb|AFI49527.1| double-stranded RNA-binding protein [Buffalopox virus]
gi|385246977|gb|AFI49528.1| double-stranded RNA-binding protein [Buffalopox virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|325558229|gb|ADZ29609.1| double-stranded RNA binding protein [Cowpox virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|383483498|ref|YP_005392411.1| ribonuclease III [Rickettsia parkeri str. Portsmouth]
gi|378935852|gb|AFC74352.1| ribonuclease III [Rickettsia parkeri str. Portsmouth]
Length = 227
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE AQ + LP+Y K+ G SH+ TF V+V +G G + K+AE +AA+
Sbjct: 160 KTALQEWAQASDHHLPIYRLIKREGASHSSTFTVLVKVKDYEQTGTG-HAIKEAEKNAAR 218
Query: 144 VAYMRLK 150
RLK
Sbjct: 219 SLLHRLK 225
>gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
Length = 189
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus]
gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus]
gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus]
gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus]
gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus]
Length = 153
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 98 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 145
>gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus]
gi|465071|sp|P33863.1|VE03_VAR67 RecName: Full=Protein E3
gi|297225|emb|CAA48985.1| E3L [Variola virus]
gi|745160|prf||2015436AY E3L gene
Length = 190
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus]
gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|411120253|ref|ZP_11392629.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
gi|410710409|gb|EKQ67920.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
Length = 225
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQ-AE 138
++ YK+ QE AQ P Y +SG HA T+V+ V V G+ F G+G KKQ AE
Sbjct: 153 AINYKSRFQEWAQANHRENPTYAIAHESGPDHAKTYVTEVFVNGK-FYGRGTGRKKQDAE 211
Query: 139 MSAAKVAYMRL 149
AA+ A RL
Sbjct: 212 KDAARDALDRL 222
>gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6]
gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6]
Length = 229
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK LQE + ++ N +++GE H FV V+ ++ KSKK+AEM AAK
Sbjct: 159 YKTKLQEFPELINKSINYVNLEEAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAK 218
Query: 144 VAYMRL 149
A ++L
Sbjct: 219 NALLKL 224
>gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor);
putative [Variola major virus]
gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus]
gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus]
gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus]
gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus]
gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus]
gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus]
gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus]
gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus]
gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus]
gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus]
gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus]
gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus]
gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus]
gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus]
gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus]
gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus]
gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus]
gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus]
gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus]
gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus]
gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus]
gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus]
gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus]
gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus]
gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus]
gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
15897]
gi|224524248|gb|EEF93353.1| ribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 230
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 79 DDSVLYKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQA 137
DD YK LQEL Q + Y+ K S G ++AP FV V + + SKK+A
Sbjct: 154 DDITDYKTKLQELVQSDDRKTVSYHVKSSTGPANAPEFVIEVILDDMILGTGKGTSKKRA 213
Query: 138 EMSAAKVAYMRL 149
E AAK A M++
Sbjct: 214 EQHAAKDALMKM 225
>gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25
[Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus]
gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus]
gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus]
gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus]
gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus]
gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus]
gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus]
gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus]
gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus]
gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus]
gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus]
gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus]
gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|345494516|ref|XP_001601978.2| PREDICTED: hypothetical protein LOC100117848 isoform 1 [Nasonia
vitripennis]
Length = 930
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 9 LQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVA 67
L Y K+ P+Y C GP H F KV ++G Y+ P K A+ EAA+V
Sbjct: 863 LGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKAEAAQVC 922
Query: 68 LMSLSL 73
L S+ L
Sbjct: 923 LQSIGL 928
>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
Length = 232
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 85 KNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE A+ LP Y K+ SG H F V +G E+ KSKK+AE AA+
Sbjct: 163 KTELQEKARLVKGELPRYQLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAAR 222
Query: 144 VAYMRLK 150
A++ LK
Sbjct: 223 AAFLLLK 229
>gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein, partial [Vaccinia virus]
gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus]
Length = 179
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 129 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 176
>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
gi|28201878|sp|Q8KAN7.1|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
Length = 272
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
YK++L YTQ + LP P+Y+ EG H F +V+ +GQ P K+AE A
Sbjct: 190 YKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFVVEVSCNGQPL-GRGTAPRKKDAEQLA 248
Query: 64 AKVALMSL 71
AK A+ L
Sbjct: 249 AKEAMKRL 256
>gi|339009341|ref|ZP_08641913.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
gi|338773819|gb|EGP33350.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
Length = 239
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q+++ +Y Q G +H FVS V + G +SKK+AE AA
Sbjct: 169 FKSQLQELVQQDSLGEIIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKEAEQRAA 228
Query: 143 KVAYMRLK 150
+A M+++
Sbjct: 229 ALALMKIE 236
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL + +PVY +G H F +TV + + +SKK+AE AA
Sbjct: 173 WKTSLQELTAEHGAGVPVYEITATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAAS 232
Query: 144 VAYMRLKE 151
A+ + E
Sbjct: 233 SAWKTMSE 240
>gi|208690885|gb|ACI31218.1| eukaryotic translation initiation factor 2-alpha kinase 2
[Erythrocebus patas]
Length = 550
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 63
Y +L Y QK+ + GPPH RF +V D + FP + +
Sbjct: 9 FYMEELNKYRQKQGITFSYQELPNTGPPHDRRFTFRVVTD------RREFPEAEGRSKKE 62
Query: 64 AKVALMSLSLDKFQQDDSVL------------------YKNVLQELAQKEAYALPVYNTK 105
AK A L++D ++ V+ Y V+ +AQK+ + N K
Sbjct: 63 AKNAAAKLAVDILNKESKVVSPFSLTTTSSSEGLSIGNYIGVVNRIAQKKRLTV---NYK 119
Query: 106 QSGES-HAPT-FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSP 163
Q H P F ++G + +S +K++A+ AAK+A + + E + ++ S
Sbjct: 120 QCTSGVHGPEGFHYKCKIGEKEYSIGTGSTKQEAKQLAAKLALLEISEETSVKPDSMSSG 179
Query: 164 DIQAQADYSSSSLQSNVTA 182
A D S+ L +N A
Sbjct: 180 SFAAMCDSQSNPLVNNSLA 198
>gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus]
gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus]
gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa]
Length = 190
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|444374116|ref|ZP_21173423.1| ribonuclease III [Helicobacter pylori A45]
gi|443621340|gb|ELT81779.1| ribonuclease III [Helicobacter pylori A45]
Length = 239
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis]
gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis]
Length = 580
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 27 REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ--------- 77
+EGPPH + F VT++GQTYE + + A+H+AA+ AL S F
Sbjct: 17 QEGPPHDTTFVVAVTVNGQTYEGKG--SSKQRAKHDAAEKALQSCVQLPFNIKTEYAPTN 74
Query: 78 ----------------------QDDSVLYKNVLQE---LAQKEAYALPVYNTKQSGESHA 112
D S L K + + + E + + + G S
Sbjct: 75 EDFTADATGNSFTENSENGQKTSDPSKLGKADISKHPVMYLNELHPTQIDYQFEEGTSEH 134
Query: 113 PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
F+ +E+ G FSG G SKK+A++ AA A ++
Sbjct: 135 DKFICNIELNGVEFSGTGT-SKKKAKVVAATKALAKV 170
>gi|325558013|gb|ADZ29394.1| double-stranded RNA binding protein [Cowpox virus]
Length = 192
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|373447244|gb|AEY72630.1| double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus]
gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus]
Length = 192
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 137 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184
>gi|408673367|ref|YP_006873115.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
gi|387854991|gb|AFK03088.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
Length = 248
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
YK++L +Q+E + +++G+ H FV+ V V GE S G +KK+AE AA+
Sbjct: 179 YKSILLSWSQQEGKRITFEIIQENGKHHHKEFVAQVSVDGEAVSKGGGWNKKKAEQEAAR 238
Query: 144 VA 145
A
Sbjct: 239 RA 240
>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
Length = 302
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 85 KNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAA 142
K +LQEL K LPVY + G HAPT + G EV + A S+ QAE AA
Sbjct: 5 KGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVI--EAASSRAQAEKLAA 62
Query: 143 KVAYMRLK 150
Y ++K
Sbjct: 63 ATLYEKMK 70
>gi|420501452|ref|ZP_14999996.1| ribonuclease III [Helicobacter pylori Hp P-30]
gi|393150258|gb|EJC50566.1| ribonuclease III [Helicobacter pylori Hp P-30]
Length = 239
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|386751066|ref|YP_006224286.1| ribonuclease III [Helicobacter pylori Shi417]
gi|384557324|gb|AFH97792.1| ribonuclease III [Helicobacter pylori Shi417]
Length = 239
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
Length = 239
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus]
Length = 189
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 134 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 181
>gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus]
gi|439965905|gb|AGB75779.1| double-strand RNA-binding protein [Vaccinia virus]
Length = 190
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus]
gi|137622|sp|P21605.1|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25
gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus]
gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR]
Length = 190
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 102 YNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149
+ + G S++PTF + V++ G VF KSK+ A+ +AAK+A +L
Sbjct: 135 FRIESVGPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
+K LQEL+ + P Y +G H F +T V G ++KK+AE +AA
Sbjct: 164 WKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVGRTKKEAEQNAAA 223
Query: 144 VAYMRLKEPNPSQG 157
+A+ L + +P+ G
Sbjct: 224 IAWREL-DGDPTVG 236
>gi|386754216|ref|YP_006227434.1| ribonuclease III [Helicobacter pylori Shi112]
gi|384560474|gb|AFI00941.1| ribonuclease III [Helicobacter pylori Shi112]
Length = 239
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|421872840|ref|ZP_16304457.1| ribonuclease III [Brevibacillus laterosporus GI-9]
gi|372458255|emb|CCF14006.1| ribonuclease III [Brevibacillus laterosporus GI-9]
Length = 229
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQS-GESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q+++ +Y Q G +H FVS V + G +SKK+AE AA
Sbjct: 159 FKSQLQELVQQDSLGEIIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKEAEQRAA 218
Query: 143 KVAYMRLK 150
+A M+++
Sbjct: 219 ALALMKIE 226
>gi|338738021|ref|YP_004674983.1| ribonuclease III [Hyphomicrobium sp. MC1]
gi|337758584|emb|CCB64409.1| ribonuclease III [Hyphomicrobium sp. MC1]
Length = 235
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAE 138
+V K+ LQE AQ + ALP Y ++G HAP F + V + G G+GA SK+ AE
Sbjct: 157 TVDAKSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRAPAQGEGA-SKRIAE 215
Query: 139 MSAAKVAYMR 148
+AA R
Sbjct: 216 QAAASALLTR 225
>gi|384892695|ref|YP_005766788.1| ribonuclease III [Helicobacter pylori Cuz20]
gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
Length = 239
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 229 YQALQKLKE 237
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQK-EAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQE+ Q+ + AL K++G +H TFVS V + G+ KSKK+AE AA
Sbjct: 177 FKSQLQEMVQQANSGALQYTIIKENGPAHNRTFVSQVMLNGKELGVGNGKSKKEAEQKAA 236
Query: 143 KVAYMRLKE 151
+ A + LK+
Sbjct: 237 QSAMVALKK 245
>gi|407799645|ref|ZP_11146523.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
gi|407058122|gb|EKE44080.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
Length = 227
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 58 EAEHEAAKVALMSLSLDKFQ--QDDSVLYKNVLQELAQKEAYALPVY-NTKQSGESHAPT 114
+A EAA+ ++ L D+ + D+ K LQE AQ P Y + G HAP
Sbjct: 130 DAGFEAARAVILRLWGDRIATVEPDARDAKTALQEWAQARGQTPPAYVEVARDGPDHAPL 189
Query: 115 FVSTVEVGGEVFSGQ----GAKSKKQAEMSAAK 143
F T+EV + SGQ AKSK+ AE SAA+
Sbjct: 190 F--TIEV--RLDSGQSARAAAKSKRMAEQSAAR 218
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 85 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K LQE Q + +P+Y +SG H P F V + G SKK AE AAK
Sbjct: 167 KTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEAAK 226
Query: 144 VAYMRLKE 151
+ R+ E
Sbjct: 227 LMLKRITE 234
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+ LQEL Q+++ Y Q G +H FVS V + GE +SKK+AE AA
Sbjct: 176 FKSQLQELVQRDSAGTIEYGILQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAA 235
Query: 143 KVAYMRLK 150
++A +LK
Sbjct: 236 QMALEKLK 243
>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
Length = 1382
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 86 NVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 145
+VL E +Q+ + + T Q G SH P F+ V+VG +F A SKK A AA+ A
Sbjct: 746 SVLMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEA 805
Query: 146 YMRL 149
L
Sbjct: 806 VKEL 809
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 85 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 143
K+ LQEL Q + P+YN +SG +H P F + V G+ G KSKK E +AA+
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRATG-KSKKLGEENAAR 211
Query: 144 VAYMRLK 150
+ LK
Sbjct: 212 MMLEELK 218
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 74 DKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAK 132
+ F++D YK LQEL QK + P Y + G H F+ V+V +V++ +
Sbjct: 157 EDFERD----YKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKEDVWAQGRGR 212
Query: 133 SKKQAEMSAAKVAY-MRLKEPN 153
SKK AE AAK A M+ KE N
Sbjct: 213 SKKNAEQMAAKNALEMKYKETN 234
>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|408401236|ref|YP_006859199.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410494313|ref|YP_006904159.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|417752716|ref|ZP_12400893.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417928266|ref|ZP_12571654.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|333771523|gb|EGL48458.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340766140|gb|EGR88666.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|407967464|dbj|BAM60702.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410439473|emb|CCI62101.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 230
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q K A+ + G +HA F V V EV S KSKK AE AA
Sbjct: 161 YKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAA 220
Query: 143 KVAYMRLKE 151
K A ++L E
Sbjct: 221 KNALVQLSE 229
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 84 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
+K+VLQ+ AQ+E A PVY +++G H F+ V F+ +KK AE AA
Sbjct: 186 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAA 245
Query: 143 KVAYMRL---KEPNPSQGP 158
A L K P S+ P
Sbjct: 246 ANALAELHNAKVPYDSEQP 264
>gi|422758515|ref|ZP_16812277.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 230
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQ-KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q K A+ + G +HA F V V EV S KSKK AE AA
Sbjct: 161 YKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAA 220
Query: 143 KVAYMRLKE 151
K A ++L E
Sbjct: 221 KNALVQLSE 229
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length = 249
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 62 EAAKVALMSLSLDKF----QQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117
E A+ ++ L D Q + +K LQELA + +P Y + G HA F +
Sbjct: 138 EVARAVVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAA 197
Query: 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151
V + G ++KK+AE +AA AY L++
Sbjct: 198 RVLLSGSARGTGTGRTKKEAEQNAAAAAYTGLQD 231
>gi|371943592|gb|AEX61420.1| hypothetical protein c7_L354 [Megavirus courdo7]
Length = 246
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 85 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV--EVGGEVFSGQGAKSKKQAEMSAA 142
KN LQE QK +P+YN+ SG H + S++ + G+ F+ G+K+ +S
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSISSGPDHNKIWTSSIVATINGQEFTLVGSKNSNSKTISQQ 64
Query: 143 KVA 145
VA
Sbjct: 65 MVA 67
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKV--TIDGQTY 47
KN+LQ Y QK LP+P+Y+ GP H + + TI+GQ +
Sbjct: 5 KNKLQEYFQKNKLPIPIYNSISSGPDHNKIWTSSIVATINGQEF 48
>gi|384896042|ref|YP_005770031.1| ribonuclease III [Helicobacter pylori 35A]
gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
Length = 238
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 168 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 143 KVAYMRLKEPN 153
A +LKE
Sbjct: 228 YQALQKLKEAK 238
>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
gi|238691923|sp|B2UTG4.1|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
Length = 238
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 168 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 143 KVAYMRLKE 151
A +LKE
Sbjct: 228 YQALQKLKE 236
>gi|428209032|ref|YP_007093385.1| RNAse III [Chroococcidiopsis thermalis PCC 7203]
gi|428010953|gb|AFY89516.1| RNAse III [Chroococcidiopsis thermalis PCC 7203]
Length = 237
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 84 YKNVLQELAQKEAYALPVYNTKQSGESHAP--TFVSTVEVGGEVFSGQG-AKSKKQAEMS 140
YK LQE Q + LP Y ++S + H F + V + G + GQG +SKK AE +
Sbjct: 166 YKAALQEWTQAQFKILPEYRVRESLQPHGAFERFSAEVWLQGRLL-GQGTGRSKKDAEQA 224
Query: 141 AAKVAYM 147
AA+VA++
Sbjct: 225 AAQVAFI 231
>gi|385225363|ref|YP_005785288.1| ribonuclease III [Helicobacter pylori 83]
gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
Length = 239
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKEP 152
A +LKE
Sbjct: 229 YQALQKLKEA 238
>gi|385217430|ref|YP_005778906.1| ribonuclease III [Helicobacter pylori F16]
gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
Length = 239
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKEPN 153
A +LKE
Sbjct: 229 YQALQKLKEAK 239
>gi|385220515|ref|YP_005781987.1| ribonuclease III [Helicobacter pylori India7]
gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
Length = 239
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 142
YK LQEL Q + +P Y K+ G H F + + ++++ KSKK+AE A
Sbjct: 169 YKTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 143 KVAYMRLKEP 152
A +LKE
Sbjct: 229 YQALQKLKEA 238
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.125 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,795,534,035
Number of Sequences: 23463169
Number of extensions: 186014448
Number of successful extensions: 409368
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 1425
Number of HSP's that attempted gapping in prelim test: 404833
Number of HSP's gapped (non-prelim): 4812
length of query: 314
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 172
effective length of database: 9,027,425,369
effective search space: 1552717163468
effective search space used: 1552717163468
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)