Query 021322
Match_columns 314
No_of_seqs 231 out of 1915
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 3.1E-26 6.8E-31 217.0 19.2 148 3-154 38-214 (339)
2 PRK12371 ribonuclease III; Rev 99.8 6E-19 1.3E-23 162.9 8.1 142 7-151 88-231 (235)
3 COG0571 Rnc dsRNA-specific rib 99.8 7.9E-19 1.7E-23 162.0 8.2 144 7-153 86-233 (235)
4 PRK14718 ribonuclease III; Pro 99.7 2.4E-18 5.3E-23 169.4 8.4 143 7-152 76-223 (467)
5 PRK12372 ribonuclease III; Rev 99.7 1.1E-17 2.5E-22 163.7 8.8 143 7-152 76-223 (413)
6 cd00048 DSRM Double-stranded R 99.7 8.6E-16 1.9E-20 112.8 9.6 67 83-149 1-68 (68)
7 PHA02701 ORF020 dsRNA-binding 99.6 7.5E-16 1.6E-20 136.1 8.9 72 80-152 106-178 (183)
8 PRK00102 rnc ribonuclease III; 99.6 5.7E-16 1.2E-20 141.2 7.3 142 7-151 83-228 (229)
9 smart00358 DSRM Double-strande 99.6 2.5E-15 5.5E-20 110.5 8.9 66 84-150 1-67 (67)
10 PHA03103 double-strand RNA-bin 99.6 1.7E-15 3.8E-20 134.4 9.3 72 80-152 107-178 (183)
11 PF00035 dsrm: Double-stranded 99.6 3.1E-15 6.7E-20 110.5 8.2 66 84-149 1-67 (67)
12 TIGR02191 RNaseIII ribonucleas 99.6 1.5E-15 3.2E-20 137.4 7.5 140 7-149 77-220 (220)
13 KOG2777 tRNA-specific adenosin 99.4 3.3E-13 7.2E-18 136.1 8.1 189 21-225 10-234 (542)
14 PF14709 DND1_DSRM: double str 99.4 7.5E-13 1.6E-17 103.2 7.7 69 82-150 1-80 (80)
15 cd00048 DSRM Double-stranded R 99.4 2.4E-12 5.2E-17 94.3 7.9 67 4-71 1-68 (68)
16 PHA02701 ORF020 dsRNA-binding 99.3 1.9E-12 4.1E-17 114.7 7.5 70 3-74 108-178 (183)
17 PHA03103 double-strand RNA-bin 99.3 2.5E-12 5.5E-17 114.3 7.7 71 2-74 108-178 (183)
18 smart00358 DSRM Double-strande 99.3 4.8E-12 1E-16 92.9 7.4 66 5-72 1-67 (67)
19 KOG3732 Staufen and related do 99.3 5.5E-12 1.2E-16 120.4 8.5 100 53-154 2-109 (339)
20 PF00035 dsrm: Double-stranded 99.3 6.6E-12 1.4E-16 92.6 6.7 66 5-71 1-67 (67)
21 PRK12371 ribonuclease III; Rev 99.2 3.7E-11 8.1E-16 111.2 8.1 71 2-73 160-231 (235)
22 PF14709 DND1_DSRM: double str 99.2 5.3E-11 1.1E-15 92.8 7.1 70 3-72 1-80 (80)
23 PRK14718 ribonuclease III; Pro 99.1 2.9E-10 6.3E-15 112.7 8.1 72 2-74 150-223 (467)
24 COG0571 Rnc dsRNA-specific rib 99.0 4.8E-10 1E-14 103.8 8.1 71 3-74 161-232 (235)
25 PRK12372 ribonuclease III; Rev 99.0 7.5E-10 1.6E-14 109.0 8.1 71 2-73 150-222 (413)
26 PRK00102 rnc ribonuclease III; 99.0 1.1E-09 2.3E-14 99.9 8.2 71 2-73 157-228 (229)
27 TIGR02191 RNaseIII ribonucleas 98.9 3.3E-09 7.2E-14 95.9 8.0 69 2-71 151-220 (220)
28 KOG4334 Uncharacterized conser 98.9 8E-09 1.7E-13 102.7 9.9 146 2-152 374-559 (650)
29 KOG1817 Ribonuclease [RNA proc 98.9 3.3E-09 7.1E-14 104.3 7.0 140 10-153 356-505 (533)
30 KOG3769 Ribonuclease III domai 98.0 1E-05 2.2E-10 76.8 6.9 83 80-162 230-315 (333)
31 KOG0921 Dosage compensation co 98.0 8.9E-06 1.9E-10 86.5 6.4 146 4-151 2-240 (1282)
32 KOG4334 Uncharacterized conser 97.8 1.4E-05 3.1E-10 79.9 3.8 72 81-153 374-445 (650)
33 KOG2777 tRNA-specific adenosin 97.8 4.2E-05 9E-10 78.1 7.0 66 2-74 89-155 (542)
34 KOG0921 Dosage compensation co 96.9 0.0025 5.4E-08 68.6 8.0 72 83-155 2-74 (1282)
35 KOG1817 Ribonuclease [RNA proc 96.9 0.0024 5.1E-08 63.7 7.3 71 3-74 427-504 (533)
36 PF03368 Dicer_dimer: Dicer di 96.8 0.0032 6.8E-08 50.0 5.7 66 85-154 2-76 (90)
37 KOG3792 Transcription factor N 96.7 0.0025 5.4E-08 66.7 5.5 119 26-152 398-572 (816)
38 KOG3769 Ribonuclease III domai 96.2 0.0075 1.6E-07 57.7 5.1 70 4-74 233-304 (333)
39 PF14954 LIX1: Limb expression 95.8 0.028 6.2E-07 51.5 6.9 80 80-159 19-106 (252)
40 PF03368 Dicer_dimer: Dicer di 93.1 0.22 4.7E-06 39.5 5.2 67 6-77 2-77 (90)
41 KOG2334 tRNA-dihydrouridine sy 91.8 0.07 1.5E-06 53.4 1.1 72 79-153 372-444 (477)
42 KOG2334 tRNA-dihydrouridine sy 87.2 0.27 5.9E-06 49.3 1.2 68 3-73 375-442 (477)
43 PF14954 LIX1: Limb expression 86.2 1.9 4E-05 39.9 5.9 68 3-70 21-94 (252)
44 KOG3792 Transcription factor N 80.8 0.69 1.5E-05 49.1 1.0 49 100-149 386-441 (816)
45 PF14600 CBM_5_12_2: Cellulose 74.0 2.4 5.2E-05 31.5 1.9 33 276-308 3-59 (62)
46 cd04518 TBP_archaea archaeal T 68.2 74 0.0016 28.3 10.5 110 34-150 46-172 (174)
47 PF14622 Ribonucleas_3_3: Ribo 59.3 0.39 8.5E-06 40.1 -5.4 64 7-73 63-126 (128)
48 PRK00394 transcription factor; 58.8 1.2E+02 0.0026 27.0 10.1 114 33-151 44-174 (179)
49 PF01436 NHL: NHL repeat; Int 54.3 4.6 0.0001 24.8 0.2 18 290-307 2-19 (28)
50 cd00652 TBP_TLF TATA box bindi 54.0 1.6E+02 0.0034 26.1 10.7 105 34-149 46-172 (174)
51 PF08029 HisG_C: HisG, C-termi 52.3 13 0.00028 28.6 2.5 17 293-309 28-45 (75)
52 PF02169 LPP20: LPP20 lipoprot 46.4 31 0.00066 26.4 3.8 30 124-153 13-42 (92)
53 PF14657 Integrase_AP2: AP2-li 36.1 1.4E+02 0.003 20.2 5.7 21 129-150 22-42 (46)
54 PF09282 Mago-bind: Mago bindi 35.2 14 0.0003 23.1 0.2 21 266-286 5-25 (27)
55 PF12098 DUF3574: Protein of u 30.2 32 0.00069 28.2 1.6 16 291-306 34-49 (104)
56 PF10621 FpoO: F420H2 dehydrog 29.0 28 0.0006 29.0 1.0 23 273-295 3-32 (119)
57 cd04517 TLF TBP-like factors ( 28.0 4.2E+02 0.0092 23.4 10.5 105 34-149 46-172 (174)
58 cd04516 TBP_eukaryotes eukaryo 25.0 4.9E+02 0.011 23.1 10.5 111 33-149 45-171 (174)
59 TIGR03455 HisG_C-term ATP phos 24.6 48 0.001 26.8 1.7 16 294-309 53-69 (100)
60 KOG0701 dsRNA-specific nucleas 23.4 87 0.0019 37.0 4.0 72 82-153 1514-1600(1606)
61 cd04516 TBP_eukaryotes eukaryo 23.2 2E+02 0.0043 25.6 5.5 39 112-152 45-83 (174)
62 smart00535 RIBOc Ribonuclease 21.4 15 0.00032 29.9 -2.0 64 7-73 61-124 (129)
63 COG1944 Uncharacterized conser 21.0 4E+02 0.0087 27.0 7.7 66 84-153 19-88 (398)
64 KOG3302 TATA-box binding prote 20.6 2.1E+02 0.0046 26.2 5.1 68 82-152 34-107 (200)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.94 E-value=3.1e-26 Score=216.99 Aligned_cols=148 Identities=30% Similarity=0.351 Sum_probs=130.2
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC-----
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF----- 76 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~----- 76 (314)
|.|+|.|||||.++++. |.|++ ..+||.|++.|+++|.++... ..|. |.+||.||+.||..+|..|.....
T Consensus 38 KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~~~-a~Ge-G~sKK~AKh~AA~~~L~~lk~l~~l~~v~ 114 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGEIT-ATGE-GKSKKLAKHRAAEALLKELKKLPPLANVR 114 (339)
T ss_pred CChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEeeeE-EecC-CCchhHHHHHHHHHHHHHHhcCCCccccc
Confidence 89999999999999996 78888 468999999999999999643 3455 699999999999999999986431
Q ss_pred ------------C----------CCcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCC
Q 021322 77 ------------Q----------QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS 133 (314)
Q Consensus 77 ------------~----------~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~S 133 (314)
. .+...||+++|+||||+++|..|.|++ .+.|++|.++|+++|.+.+.. ..|.|.|
T Consensus 115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~-~~GkG~s 193 (339)
T KOG3732|consen 115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKGPS 193 (339)
T ss_pred cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee-eecCCch
Confidence 0 013789999999999999999999997 689999999999999998865 5799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 021322 134 KKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 134 KK~Akq~AA~~AL~~L~~~~~ 154 (314)
||.||++||+.||+.|....+
T Consensus 194 KKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 194 KKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999997765
No 2
>PRK12371 ribonuclease III; Reviewed
Probab=99.77 E-value=6e-19 Score=162.90 Aligned_cols=142 Identities=20% Similarity=0.123 Sum_probs=112.1
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCC-CCcccchH
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ-QDDSVLYK 85 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~-~d~~~n~k 85 (314)
..|.++|.+.|+ +.|.....+.... .-....++.+++||+.+||++.+.+.+.|.+++...+.+.... .....|||
T Consensus 88 ~~La~ia~~lgL--~~~i~~~~~~~~~-~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~~~~~~~~~~~d~K 164 (235)
T PRK12371 88 ETCAAIADEIGL--HDLIRTGSDVKKL-TGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQKRALETDAARRDAK 164 (235)
T ss_pred HHHHHHHHHCCc--HHHhccCcchhhc-CCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccCCHH
Confidence 468889999886 4555532221110 0111235778999999999999999887777777766544321 23567999
Q ss_pred HHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 86 NVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 86 s~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
+.||||||++++..|.|.+ .+.||.|.+.|+|.|.++|..++.|.|+|||+||+.||+.||+.|..
T Consensus 165 s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 165 TELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999998999997 57899999999999999999999999999999999999999999865
No 3
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.77 E-value=7.9e-19 Score=161.95 Aligned_cols=144 Identities=26% Similarity=0.254 Sum_probs=120.7
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|..++...++ ..|...+.|+.....|. +.+|.++.||+.+||+|.+.+.+.|-+++.+.+..... ......|
T Consensus 86 ~~La~ia~~l~l--~~~l~lg~ge~~~gg~~-~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~~~~~~~~~~~~D 162 (235)
T COG0571 86 ESLAEIARELGL--GDYLRLGKGEEKSGGRR-RESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKD 162 (235)
T ss_pred HHHHHHHHHhCc--cchhhccCChhhcCCCC-chhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhccccccccC
Confidence 468889999885 67888777877666555 57899999999999999999966666666555554432 2334599
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
||++||||||++++..|.|.+ ...||+|++.|++.|.++|..++.|.|+|||+|||.||+.||+.|....
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999997 4669999999999999999999999999999999999999999997654
No 4
>PRK14718 ribonuclease III; Provisional
Probab=99.74 E-value=2.4e-18 Score=169.42 Aligned_cols=143 Identities=22% Similarity=0.136 Sum_probs=113.2
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|.+++.++||. .|.+...|......+. +-+|.+++||+.+||+|++.+.+.+..++...|..... ......|
T Consensus 76 etLA~IAr~LGL~--d~Lrlg~gE~~sgG~~-~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~~~d~~~~~kD 152 (467)
T PRK14718 76 QSLYEIAQALNIS--DGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKD 152 (467)
T ss_pred HHHHHHHHHcCch--HHHhhCCcccccCCCC-ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhhcccccccC
Confidence 4688999999874 4555444443322232 45788999999999999999988666666555543321 1234679
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~-~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
||+.||||||++++..|+|.+ .+.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||+.|...
T Consensus 153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999997 57899999999999999995 4578999999999999999999999744
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=99.72 E-value=1.1e-17 Score=163.66 Aligned_cols=143 Identities=22% Similarity=0.140 Sum_probs=112.0
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|.++|.+.|+. .|.....|......|. +.+|.++.||+.+||+|++.+.+.+..++.+.|..... ......|
T Consensus 76 ~tLA~IA~~LgL~--~~Lrlg~ge~~sgg~~-~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~~~~~~~~~~D 152 (413)
T PRK12372 76 QSLYEIAQALNIS--EGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKD 152 (413)
T ss_pred HHHHHHHHHcCch--HhhhcCcchhhcCCCC-CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 5789999999874 4544433433222232 45788999999999999999988666555555443221 1223679
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~-~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
||+.||||||++++..|+|.+ .+.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||+.|...
T Consensus 153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~ 223 (413)
T PRK12372 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAA 223 (413)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999997 58899999999999999985 4578999999999999999999999843
No 6
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.65 E-value=8.6e-16 Score=112.79 Aligned_cols=67 Identities=42% Similarity=0.586 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 83 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 83 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
|||+.|+||||++++..|.|++ ...|+.|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999998 678999999999999999988889999999999999999999876
No 7
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.63 E-value=7.5e-16 Score=136.12 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=66.7
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
...|||+.||||||++++.. .|.+ .+.||.|.++|++.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999888 8986 578999999999999999999999999999999999999999998653
No 8
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.62 E-value=5.7e-16 Score=141.23 Aligned_cols=142 Identities=28% Similarity=0.282 Sum_probs=108.6
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|..++.+.|+. .|.....|..... ......+.++.|++.+||.+.+.+...|.+++...+.+... ......|
T Consensus 83 ~~la~~a~~lgl~--~~i~~~~~~~~~~-~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l~~~~~~~~~~~ 159 (229)
T PRK00102 83 ESLAEIARELGLG--EYLLLGKGEEKSG-GRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRIEEIDLGDLVKD 159 (229)
T ss_pred HHHHHHHHHCCcH--HHHccCcHHHHcC-CCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 5688899998864 4444222211000 11223567889999999999999887665555555443321 1245789
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
||+.|+||||++++..|.|.+ ...|+.|.+.|+|+|.++|..++.|.|.|||+||+.||+.||+.|..
T Consensus 160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999997 57899999999999999999999999999999999999999999864
No 9
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.62 E-value=2.5e-15 Score=110.48 Aligned_cols=66 Identities=45% Similarity=0.579 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhcCCCCcEEEe-ecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
||+.|+||||++++ .|.|.+. ..|+.|.+.|+|.|.|+|+.++.|.|.|||+||+.||+.||+.|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999 7899975 579999999999999999988899999999999999999999873
No 10
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.61 E-value=1.7e-15 Score=134.36 Aligned_cols=72 Identities=29% Similarity=0.324 Sum_probs=65.1
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
...|||++||||||++++.. .|.+...||.|.++|++.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999875 5555788999999999999999999999999999999999999999998643
No 11
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.60 E-value=3.1e-15 Score=110.47 Aligned_cols=66 Identities=36% Similarity=0.542 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhcCCCCcEEEeecCCCCC-CeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 84 YKNVLQELAQKEAYALPVYNTKQSGESHA-PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~-~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
||+.|+|||+++++.+|.|.+...+++|. ++|.|+|.|+|..++.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 79999999999998876666666666555 8999999999999999999999999999999999987
No 12
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.60 E-value=1.5e-15 Score=137.44 Aligned_cols=140 Identities=27% Similarity=0.279 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|..++.+.|+ +.|.....+.... .......+-++.|++.+||.+.+.+.+.|.+++...|.+... ......|
T Consensus 77 ~~la~~a~~~gl--~~~i~~~~~~~~~-~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~~ 153 (220)
T TIGR02191 77 ESLAEVARELGL--GKFLLLGKGEEKS-GGRRRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIEKEETLKD 153 (220)
T ss_pred HHHHHHHHHCCc--HHHhccCchHhhc-CCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 468889998886 3444422111110 011123567889999999999999977666555555444321 2336789
Q ss_pred hHHHHHHHHHHhcCCCCcEEEe-ecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 84 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
||+.|+||||++++..|.|++. ..|++|.+.|+|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus 154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 9999999999999988999974 67999999999999999999999999999999999999999875
No 13
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.42 E-value=3.3e-13 Score=136.09 Aligned_cols=189 Identities=25% Similarity=0.262 Sum_probs=133.6
Q ss_pred Cceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---------------C-------
Q 021322 21 PMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---------------Q------- 77 (314)
Q Consensus 21 P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---------------~------- 77 (314)
+.|.. .+.||.|.+.|...|.|+|..|. ||.|+..||+.+++.+.+.+. .
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 44555 57899999999999999998766 899999999999999886531 0
Q ss_pred ---CCcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 78 ---QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 78 ---~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
.....||++.|+|+++ .+.|+. .+.|+.|.+.|.|.|.|||+.|..| |.|||+||++||+.||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 1137899999999998 568886 6899999999999999999999877 99999999999999999998765
Q ss_pred CCCC----CCCCCCCccccccccccc--ccccccccccccccCCcee---ecCCCCCchhhHHHHhhccccccccccccC
Q 021322 154 PSQG----PALVSPDIQAQADYSSSS--LQSNVTADLHHNIQTAGRL---VFNPNSMPKVQAEEIRELTTVNTEVAGYDL 224 (314)
Q Consensus 154 ~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 224 (314)
.... ...++....+.+.++..- .|..|+.+-+--.....+| +|.-..++++++ -..+|++-||.|+-+
T Consensus 157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~V---VslgTGtKcv~g~~l 233 (542)
T KOG2777|consen 157 ENPERPSEALTLENPSTLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKV---VSLGTGTKCVSGDKL 233 (542)
T ss_pred CCcccccccccccCCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceE---EEeeccCcccCccee
Confidence 4321 223333344555555432 4566655333222222222 111111222222 277888888876655
Q ss_pred c
Q 021322 225 S 225 (314)
Q Consensus 225 ~ 225 (314)
+
T Consensus 234 s 234 (542)
T KOG2777|consen 234 S 234 (542)
T ss_pred C
Confidence 3
No 14
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.40 E-value=7.5e-13 Score=103.17 Aligned_cols=69 Identities=32% Similarity=0.425 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEee---------e-cccCCHHHHHHHHHHHHHHHhc
Q 021322 82 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS---------G-QGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~---------~-g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
+++++.|+|+|++++|..|.|++ .+.||+|.+.|++.|.|.+..+. . -...+||+||..||+.||+.|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999998 58899999999999999886652 1 2248899999999999999884
No 15
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.37 E-value=2.4e-12 Score=94.31 Aligned_cols=67 Identities=42% Similarity=0.567 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHh
Q 021322 4 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL 71 (314)
Q Consensus 4 npkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L 71 (314)
|||+.|+||||++++..|.|.+ ...|+.|.+.|.+.|.|++..+..+. |.+||+|++.||+.+|..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGE-GSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEee-cCCHHHHHHHHHHHHHHhC
Confidence 7999999999999888899999 57788899999999999997777777 5899999999999999865
No 16
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.35 E-value=1.9e-12 Score=114.67 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
+|||+.||||||+.+..+ .|.+ ...||.|.+.|++.|.|+|..++.|. |.|||+|+++||+.||..|...
T Consensus 108 ~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~-G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATAS-GCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHHHHHHhh
Confidence 599999999999999876 7977 46799999999999999999999888 5999999999999999998754
No 17
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.34 E-value=2.5e-12 Score=114.29 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||+++... .|.+...||+|.+.|+++|.|+|..|+.|. |.|||+|+|.||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~-G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAI-GSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999864 555567899999999999999999999988 5999999999999999998764
No 18
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.32 E-value=4.8e-12 Score=92.90 Aligned_cols=66 Identities=39% Similarity=0.509 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhc
Q 021322 5 YKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 5 pkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~ 72 (314)
||+.|+||||++++ .|.|.+. ..|+.|.+.|.+.|.|+|..+..+. |.+||.|++.||+.+|..|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGE-GSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHhcC
Confidence 78999999999999 6999985 4789999999999999998777777 69999999999999998873
No 19
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.30 E-value=5.5e-12 Score=120.41 Aligned_cols=100 Identities=33% Similarity=0.424 Sum_probs=85.9
Q ss_pred ccCCChhHHHHHHHHHHHhccccC------CCCcc-cchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCE
Q 021322 53 FPTLKEAEHEAAKVALMSLSLDKF------QQDDS-VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE 124 (314)
Q Consensus 53 a~SKK~Akq~AA~~aL~~L~~~~~------~~d~~-~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~ 124 (314)
|.+...|+|.||..+|+.|..... ..+.. +.++|.|||||.+++.. |.|++ .+.||+|.+.|++.|.|+.
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~- 79 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPGAKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGE- 79 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhcccccCcccCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEee-
Confidence 367789999999999999887542 12333 89999999999999997 59997 6799999999999999974
Q ss_pred EeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 125 VFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 125 ~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
..+.|.|+|||.||+.||..+|..|+.-.+
T Consensus 80 ~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 80 ITATGEGKSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred eEEecCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999987765
No 20
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.30 E-value=6.6e-12 Score=92.58 Aligned_cols=66 Identities=45% Similarity=0.708 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCCCceeeeecCCCCC-cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHh
Q 021322 5 YKNQLQSYTQKKNLPLPMYSCEREGPPHA-SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL 71 (314)
Q Consensus 5 pkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~-~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L 71 (314)
||+.|+|||++.++.+++|.....|+.|. +.|.++|.|+|..+..+. |.+||+|++.||+.+|+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGE-GSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEec-cCCHHHHHHHHHHHHHHhC
Confidence 79999999999999877776766666555 899999999999998887 5899999999999999876
No 21
>PRK12371 ribonuclease III; Reviewed
Probab=99.20 E-value=3.7e-11 Score=111.15 Aligned_cols=71 Identities=27% Similarity=0.384 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||+.+...|.|.+. ..||.|.+.|++.|+++|..++.|. |.|||+|++.||+.+|+.|..
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~-G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGE-GRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHhhh
Confidence 3599999999999988888999984 7799999999999999999888887 699999999999999998753
No 22
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.19 E-value=5.3e-11 Score=92.79 Aligned_cols=70 Identities=33% Similarity=0.399 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeee---------ccccccCCChhHHHHHHHHHHHhc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE---------SHQFFPTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~fe---------ag~Ga~SKK~Akq~AA~~aL~~L~ 72 (314)
+++++.|+|+|+|++|..|.|.+ ...||+|.+.|.++|.|.+..+. ....-.+||+|+..||+.+|..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999 47899999999999999987663 223467899999999999998873
No 23
>PRK14718 ribonuclease III; Provisional
Probab=99.07 E-value=2.9e-10 Score=112.74 Aligned_cols=72 Identities=28% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEccee-eeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQT-YESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~-feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||++++..|.|.+. ..|+.|.+.|.+.|+|++.. ++.|. |.|||+|+|.||+.+|+.|...
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~-G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGS-GASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEE-cCCHHHHHHHHHHHHHHHhccc
Confidence 4799999999999999999999985 67999999999999999854 45676 6999999999999999999843
No 24
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.05 E-value=4.8e-10 Score=103.78 Aligned_cols=71 Identities=34% Similarity=0.457 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
+|||+.||||||..+...|.|.+. ..||+|++.|.+.|.++|..++.|. |.|||+|+|.||+.+|..|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~-G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGK-GRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEec-ccCHHHHHHHHHHHHHHHhccc
Confidence 799999999999999999999995 5699999999999999999989888 6999999999999999998753
No 25
>PRK12372 ribonuclease III; Reviewed
Probab=99.01 E-value=7.5e-10 Score=109.03 Aligned_cols=71 Identities=28% Similarity=0.340 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcce-eeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~-~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++++..|.|.+ ...|+.|.+.|++.|+|+|. .+..|. |.|||+|+|.||+.+|+.|..
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~-G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGS-GASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEE-eCCHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999998 47799999999999999985 445666 699999999999999999984
No 26
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.00 E-value=1.1e-09 Score=99.92 Aligned_cols=71 Identities=39% Similarity=0.559 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
..|||+.|+||||+.++..|.|.+ ...|+.|.+.|++.|.++|+.++.|. |.+||+|++.||+.||+.|..
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGT-GSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHhh
Confidence 469999999999999998899987 46799999999999999999998887 599999999999999999864
No 27
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.91 E-value=3.3e-09 Score=95.95 Aligned_cols=69 Identities=39% Similarity=0.603 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHh
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL 71 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L 71 (314)
..|||+.|+||||+.++..|.|.+. ..|+.|.+.|.+.|.++|+.++.|. |.+||.|++.||+.|++.|
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~-g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHhC
Confidence 4799999999999998878999985 5689999999999999999998888 5899999999999999875
No 28
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.88 E-value=8e-09 Score=102.68 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC-----
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF----- 76 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~----- 76 (314)
++..+.+|+||+|+....+|.|++.+.-. ....|...|.+++..|++|. |.+||.|+..||+.+|..|++...
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n-~stpysa~v~~d~~~yGsG~-g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n 451 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDN-NSTPYSAGVLPDLFPYGSGV-GASKKTAKLVAARDTLEILIPDLRVSEDN 451 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccC-CCCccccccccccccccccc-ccchHHHHHHHHHHHHHHhcchhhhcccc
Confidence 46678899999999888899998854332 23459999999999999998 589999999999999999987531
Q ss_pred -----------------------CCC----------cccchHHHHHHHHHHhcCC-CCcEEEee-cCCCCCCeEEEEEEE
Q 021322 77 -----------------------QQD----------DSVLYKNVLQELAQKEAYA-LPVYNTKQ-SGESHAPTFVSTVEV 121 (314)
Q Consensus 77 -----------------------~~d----------~~~n~ks~LqE~~qk~~~~-~P~Y~~~~-~Gp~h~~~F~~~V~v 121 (314)
+.+ ..-.|-..|.++.+++..- --....+. .+.....+|++.|
T Consensus 452 ~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~-- 529 (650)
T KOG4334|consen 452 VCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL-- 529 (650)
T ss_pred cccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee--
Confidence 001 1345667888888776432 11222221 2233455777776
Q ss_pred CCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 122 GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 122 ~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
|+....+.+.+|+++||.|.+..|+.|...
T Consensus 530 -Gkht~~~~cknkr~gkQlASQ~ilq~lHPh 559 (650)
T KOG4334|consen 530 -GKHTEEAECKNKRQGKQLASQRILQKLHPH 559 (650)
T ss_pred -ccceeeeeeechhHHHHHHHHHHHHHhCHH
Confidence 777778899999999999999999998754
No 29
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.88 E-value=3.3e-09 Score=104.26 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=107.8
Q ss_pred HHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc--C-CCCcccchHH
Q 021322 10 QSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK--F-QQDDSVLYKN 86 (314)
Q Consensus 10 qE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~--~-~~d~~~n~ks 86 (314)
..||...|+ ++|.+...... ..-.-+.+...++||+.+||.+.+.....+.+++-..+.+.. + ...++.+||+
T Consensus 356 akva~~lgf--~e~li~n~~~k--~~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~fi~nq~wndpks 431 (533)
T KOG1817|consen 356 AKVADDLGF--HEYLITNFDLK--DFQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKEFIRNQDWNDPKS 431 (533)
T ss_pred HHHHHHhCC--chhhhhCcchh--hhhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHhhhccCcHH
Confidence 347777775 56666322110 011123466678999999999999998888777766665542 1 2457899999
Q ss_pred HHHHHHHHhcCC------CCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 87 VLQELAQKEAYA------LPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 87 ~LqE~~qk~~~~------~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
.||++|...+-. +|.|.+ ...||.+.|.|++.|.++|+.++.|.|+|.|+|+..||+.||+.+....
T Consensus 432 kLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~dF 505 (533)
T KOG1817|consen 432 KLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMDF 505 (533)
T ss_pred HHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhhh
Confidence 999999876643 678887 5889999999999999999999999999999999999999999998543
No 30
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1e-05 Score=76.79 Aligned_cols=83 Identities=25% Similarity=0.338 Sum_probs=70.6
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecC-CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC-CC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSG-ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP-SQ 156 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~G-p~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~-~~ 156 (314)
...+|...|-++|+++++..|++++ .+.| ....|.|.+.+.-|.+.+|.|.|.|-|.|++.||+.||..|....+ .+
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp~~~ 309 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTPERQ 309 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCChhhc
Confidence 3578999999999999999999997 3554 4678999999999998999999999999999999999999988773 34
Q ss_pred CCCCCC
Q 021322 157 GPALVS 162 (314)
Q Consensus 157 ~~~~~~ 162 (314)
.+..++
T Consensus 310 ~p~~~~ 315 (333)
T KOG3769|consen 310 RPPDYS 315 (333)
T ss_pred CCCccc
Confidence 444433
No 31
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.01 E-value=8.9e-06 Score=86.51 Aligned_cols=146 Identities=23% Similarity=0.220 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC-------
Q 021322 4 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF------- 76 (314)
Q Consensus 4 npkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~------- 76 (314)
+-|+.|..||.|.... |.|.+...|+....+|.|.|.+.+..+...+.+..||.|..+||+...+.|...+.
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p 80 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIP 80 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCc
Confidence 5689999999999987 99999888888889999999999998887777888999999999999998854320
Q ss_pred -------------------------------------CC-----------------------------------------
Q 021322 77 -------------------------------------QQ----------------------------------------- 78 (314)
Q Consensus 77 -------------------------------------~~----------------------------------------- 78 (314)
++
T Consensus 81 ~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~i 160 (1282)
T KOG0921|consen 81 TLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEI 160 (1282)
T ss_pred ccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCccc
Confidence 00
Q ss_pred ---CcccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEEC-----CEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 79 ---DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVG-----GEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 79 ---d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~-----g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
....|.|..|+++-|++... -.|+....|+.|.+.|+.+..+- -+..+.+.|++||.|...+|...++.|.
T Consensus 161 hg~wt~eN~K~~ln~~~q~~~~~-~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~ 239 (1282)
T KOG0921|consen 161 HGNWTMENAKKALNEYLQKMRIQ-DNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF 239 (1282)
T ss_pred cCCCCcchhHHHHhHHHhhhhhc-cccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence 01478899999999999995 48999889999999999886552 2334567789999999999999988875
Q ss_pred C
Q 021322 151 E 151 (314)
Q Consensus 151 ~ 151 (314)
.
T Consensus 240 h 240 (1282)
T KOG0921|consen 240 H 240 (1282)
T ss_pred H
Confidence 3
No 32
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.81 E-value=1.4e-05 Score=79.93 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=61.1
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
.+..+..|+||+|+-....|.|++-+.. .....|...|.+++..||.|.|.|||.||..||+.+|+.|....
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~ 445 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDL 445 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchh
Confidence 4555679999999999999999974332 23457999999999999999999999999999999999997554
No 33
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.80 E-value=4.2e-05 Score=78.11 Aligned_cols=66 Identities=29% Similarity=0.350 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
++||++.|+|+++ + ++|++ ...|+.|.+.|.+.|.|+|..|+++ |.+||+||+.||..+|+.|...
T Consensus 89 ~~npv~ll~e~~~--~---~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~--~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--G---LFFDFVNESGPQHAPKFVMSVVVDGRWFEGG--GRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred cCCchHHHHHHhc--c---cceeeeccCCCCCCceEEEEEEECCEEccCC--CcchHHHHHHHHHHHHHHHHhc
Confidence 4799999999999 3 55666 4779999999999999999999976 6999999999999999999865
No 34
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.94 E-value=0.0025 Score=68.56 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEe-eecccCCHHHHHHHHHHHHHHHhcCCCCC
Q 021322 83 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155 (314)
Q Consensus 83 n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~-~~g~G~SKK~Akq~AA~~AL~~L~~~~~~ 155 (314)
|-|..|..||-++... |.|++...++....+|.|.|.+.+..+ ..|...+||.|+.+||+..++.|...+..
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~ 74 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKM 74 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccc
Confidence 5688999999999998 899998889888999999999988765 45667889999999999999999876653
No 35
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=96.93 E-value=0.0024 Score=63.73 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHcCC------CCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 3 HLYKNQLQSYTQKKNL------PLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 3 knpkS~LqE~cQK~gl------~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|++.|+.+|..+.. ++|.|.+. ..||.+.+.|++.|+++|..++.+. |.+.++|+-.||+.||+.+...
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~-G~nik~Ae~rAA~~ALe~~~~d 504 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGV-GSNIKQAEMRAAMQALENLKMD 504 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeecc-CchHhHHHHHHHHHHHHHHHhh
Confidence 4799999999976543 36888884 6689999999999999999999888 5899999999999999998863
No 36
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.78 E-value=0.0032 Score=50.00 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcC-----CCCcEEEeecCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 85 KNVLQELAQKEAY-----ALPVYNTKQSGESHAPTFVSTVEVGGE----VFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 85 ks~LqE~~qk~~~-----~~P~Y~~~~~Gp~h~~~F~~~V~v~g~----~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
++.|+.||++-.. ..|.|.+...+. .|.|+|.+-.. .+.+..-.||+.||+.||-.|++.|...+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 6789999987432 358899865543 79999988531 133334699999999999999999987654
No 37
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.67 E-value=0.0025 Score=66.68 Aligned_cols=119 Identities=24% Similarity=0.162 Sum_probs=89.1
Q ss_pred eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc-cC-----------------------CCC--
Q 021322 26 EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD-KF-----------------------QQD-- 79 (314)
Q Consensus 26 ~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~-~~-----------------------~~d-- 79 (314)
...||.|.++|+..+.+++..|++- +.+||.|+-.||+..|+..... +. ..+
T Consensus 398 v~t~P~~~~~~t~e~r~~~~~~~a~--gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~ddr 475 (816)
T KOG3792|consen 398 VDTKPSHRPRRTMEVRVNGLPAEAE--GPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVDDR 475 (816)
T ss_pred eccCCcccchhhhhhhhcCCccccC--CcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCcch
Confidence 5789999999999999999999874 5999999999999998876211 00 000
Q ss_pred ----------------------------cccchHHHHHHHHHHhcCCCCcEEE-eecC-CCCCCeEEEEEEECCEEeeec
Q 021322 80 ----------------------------DSVLYKNVLQELAQKEAYALPVYNT-KQSG-ESHAPTFVSTVEVGGEVFSGQ 129 (314)
Q Consensus 80 ----------------------------~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~G-p~h~~~F~~~V~v~g~~~~~g 129 (314)
..+++...|+| +++. -.|++ .+.| ..|.++|+..|.+.|+.+ .|
T Consensus 476 ~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~E---k~rg--~k~El~set~~gs~~~R~v~gV~rvG~~a-kG 549 (816)
T KOG3792|consen 476 HANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAE---KRRG--DKYELPSETGTGSHDKRFVKGVMRVGILA-KG 549 (816)
T ss_pred hhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhh---hccc--cceecccccCCCCCCceeeeeeeeeehhh-cc
Confidence 12333333333 2222 36886 5555 789999999999999987 57
Q ss_pred ccCCHHHHHHHHHHHHHHHhcCC
Q 021322 130 GAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 130 ~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
.+.+|+.|+..|+..|++.+...
T Consensus 550 ~~~~gd~a~~~a~Lca~~pt~~l 572 (816)
T KOG3792|consen 550 LLLNGDRAVELALLCAEKPTSGL 572 (816)
T ss_pred ccccchHHHHHHHHhccCccccc
Confidence 89999999999998888776544
No 38
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0075 Score=57.66 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHcCCCCCceeee-ecC-CCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 4 LYKNQLQSYTQKKNLPLPMYSCE-REG-PPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 4 npkS~LqE~cQK~gl~~P~Y~~~-~~G-p~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
+|...|-++|+++|+.-|++.+. +.| ....+.|.+-++-+.+.++.|. |.+.+.|++.||..+|..+...
T Consensus 233 ~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~-Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 233 WPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQ-GESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred chHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCc-chHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999999984 444 3457889999999999998887 6999999999999999998875
No 39
>PF14954 LIX1: Limb expression 1
Probab=95.82 E-value=0.028 Score=51.53 Aligned_cols=80 Identities=30% Similarity=0.329 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHhc---CCCCcEE--EeecCCCCCCeEEEEEEECC-EEeee-cccCCHHHHHHHHHHHHHHH-hcC
Q 021322 80 DSVLYKNVLQELAQKEA---YALPVYN--TKQSGESHAPTFVSTVEVGG-EVFSG-QGAKSKKQAEMSAAKVAYMR-LKE 151 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~---~~~P~Y~--~~~~Gp~h~~~F~~~V~v~g-~~~~~-g~G~SKK~Akq~AA~~AL~~-L~~ 151 (314)
...|-+..||||=|.+. ..++.=. +-+..|...|-|+|-|++-| -.||. ....||-+|++.||+.||.. +.+
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfN 98 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFN 98 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHh
Confidence 45788999999765442 2222111 23566777888999999964 44543 45799999999999999875 677
Q ss_pred CCCCCCCC
Q 021322 152 PNPSQGPA 159 (314)
Q Consensus 152 ~~~~~~~~ 159 (314)
+.|++.++
T Consensus 99 EhPsRrIt 106 (252)
T PF14954_consen 99 EHPSRRIT 106 (252)
T ss_pred cCCccccc
Confidence 77765543
No 40
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=93.09 E-value=0.22 Score=39.47 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCC-----CCceeeeecCCCCCcceEEEEEEcce----eeeccccccCCChhHHHHHHHHHHHhccccC
Q 021322 6 KNQLQSYTQKKNLP-----LPMYSCEREGPPHASRFKCKVTIDGQ----TYESHQFFPTLKEAEHEAAKVALMSLSLDKF 76 (314)
Q Consensus 6 kS~LqE~cQK~gl~-----~P~Y~~~~~Gp~h~~~F~~~V~I~g~----~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~ 76 (314)
++.|+.||++..-+ .|.|.+...+. .|.|+|.+-.. .+.+. ...+|+.||+.||-.|...|.+.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999885532 47888765443 59998877431 13322 2589999999999999999998764
Q ss_pred C
Q 021322 77 Q 77 (314)
Q Consensus 77 ~ 77 (314)
+
T Consensus 77 l 77 (90)
T PF03368_consen 77 L 77 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 41
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=0.07 Score=53.44 Aligned_cols=72 Identities=29% Similarity=0.212 Sum_probs=61.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhcCCC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G-~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
-.+..+|..|..||.+.+...|.|++.+. -++.|...+.++|+.|..+.+ .+||.|+|.||..+|.......
T Consensus 372 a~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e 444 (477)
T KOG2334|consen 372 AKWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWE 444 (477)
T ss_pred cCCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcch
Confidence 35678999999999999999999998654 367899999999999866544 8999999999999999887654
No 42
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.23 E-value=0.27 Score=49.35 Aligned_cols=68 Identities=31% Similarity=0.335 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
..|+..|..||.+.+..-|.|++.+. -++.|...+.++|+.|.+.++-.++|.|+|.||..+|....-
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 47899999999999998899999653 356799999999999999999999999999999999887553
No 43
>PF14954 LIX1: Limb expression 1
Probab=86.22 E-value=1.9 Score=39.91 Aligned_cols=68 Identities=29% Similarity=0.365 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHH---cCCCCCceee--eecCCCCCcceEEEEEE-cceeeeccccccCCChhHHHHHHHHHHH
Q 021322 3 HLYKNQLQSYTQK---KNLPLPMYSC--EREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHEAAKVALMS 70 (314)
Q Consensus 3 knpkS~LqE~cQK---~gl~~P~Y~~--~~~Gp~h~~~F~~~V~I-~g~~feag~Ga~SKK~Akq~AA~~aL~~ 70 (314)
.|-|..|||+=|. .|..++.-.+ -+..|...+.|.|=|++ +|-+|+....-.+|.+|++.||+.||..
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 4778999996532 3333222111 13345555669998877 5678888877899999999999998754
No 44
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=80.79 E-value=0.69 Score=49.10 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=43.6
Q ss_pred CcEE------E-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 100 PVYN------T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 100 P~Y~------~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
..|+ + .+.+|.|.++|+++|+++|..+. ..|.+||.|+-.||+..|+..
T Consensus 386 LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~-a~gps~~~~~wh~~~k~lq~~ 441 (816)
T KOG3792|consen 386 LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE-AEGPSKKTAKWHAARKRLQNE 441 (816)
T ss_pred ceeccccCCCceeccCCcccchhhhhhhhcCCccc-cCCcccccchHHHHHHHhhcc
Confidence 4687 4 68999999999999999999875 559999999999999999877
No 45
>PF14600 CBM_5_12_2: Cellulose-binding domain; PDB: 1AIW_A.
Probab=74.00 E-value=2.4 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=22.1
Q ss_pred ccccEEEccCCCCccCCCC-----------------------ceeee-cCCcEEEEe
Q 021322 276 TCKIIRVRPNRPNMKFPEG-----------------------SSVLH-RDNQWVAWT 308 (314)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~ 308 (314)
-|..|.|||++|.-++.-| +.-+| +|.-|.-++
T Consensus 3 dc~~in~YPnw~~~DwaGG~p~HA~~GD~mv~~g~~Y~AnWwT~SvPGSD~SWt~~~ 59 (62)
T PF14600_consen 3 DCAGINVYPNWPQKDWAGGNPSHANAGDQMVYQGAVYQANWWTNSVPGSDGSWTLVC 59 (62)
T ss_dssp SSSSS-BTT--SBSSSSSS---BEEBT-EEEETTEEEEESSEE-S-TTSSTTEEEEE
T ss_pred cccccccCCCCcccccCCCCcCcccccCEEEEcCcEEEEeeEeccCCCCcccceeee
Confidence 4889999999999998875 23467 888887665
No 46
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=68.21 E-value=74 Score=28.28 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=64.4
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC----C-c--------ccchHHHHHHHHHHhcCCCC
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----D-D--------SVLYKNVLQELAQKEAYALP 100 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~----d-~--------~~n~ks~LqE~~qk~~~~~P 100 (314)
+.-++.+.-.|...-. |+.+.++|+. |++.+++.|...+... + . .....=.|.++++.... -
T Consensus 46 Pk~t~lIF~SGKiv~t--Gaks~~~a~~-a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~~la~~~~~--~ 120 (174)
T cd04518 46 PKIAALIFRSGKMVCT--GAKSVEDLHR-AVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLDAIAIGLPN--A 120 (174)
T ss_pred CcEEEEEECCCeEEEE--ccCCHHHHHH-HHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHHHHHhhCCC--C
Confidence 4455666777877655 5689888877 5677777776654211 1 0 11122256777765432 2
Q ss_pred cEEEee-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 101 VYNTKQ-SGE---SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 101 ~Y~~~~-~Gp---~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
+|+=++ .|- -..|+-++.+...|+.+-.| ++|..++++ |.+..+..|.
T Consensus 121 ~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~~l~ 172 (174)
T cd04518 121 EYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG-AKSEEDAKR-AVEKLLSRLK 172 (174)
T ss_pred ccCcccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHh
Confidence 333110 000 01355677777789998777 699999988 5566666554
No 47
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=59.28 E-value=0.39 Score=40.09 Aligned_cols=64 Identities=13% Similarity=-0.051 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
..|.+++++.|+. .|.....|..+ ......-++.++.|++.+||+|.+.+.+.|.+++.+.|.+
T Consensus 63 ~~La~~a~~lgL~--~~i~~~~~~~~-~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 63 ETLAEIAKQLGLD--KLIRWGPGEEK-SGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLILP 126 (128)
T ss_dssp HHHHHHHHHTTCG--GC-B--HHHHH-TTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCHH--HHHHhCccHhh-cCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHhcc
Confidence 4789999999975 33332221111 1122223577889999999999999999888888887764
No 48
>PRK00394 transcription factor; Reviewed
Probab=58.83 E-value=1.2e+02 Score=27.00 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred CcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC----C-c--------ccchHHHHHHHHHHhcCCC
Q 021322 33 ASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----D-D--------SVLYKNVLQELAQKEAYAL 99 (314)
Q Consensus 33 ~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~----d-~--------~~n~ks~LqE~~qk~~~~~ 99 (314)
.+.-+..+.-.|...-. ||.|.++|+. |++.+++.|...+... + . .....=.|.+++...+..-
T Consensus 44 ~Pk~t~lIf~sGKiv~t--Ga~S~~~a~~-a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L~~la~~~~~~~ 120 (179)
T PRK00394 44 DPKIAALIFRSGKVVCT--GAKSVEDLHE-AVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNLNAIAIGLGLEN 120 (179)
T ss_pred CCceEEEEEcCCcEEEE--ccCCHHHHHH-HHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcHHHHHHhcCcCC
Confidence 34455666777877655 5789898877 6677777776554311 1 0 1112224667776653222
Q ss_pred CcEEEee-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 100 PVYNTKQ-SGE---SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 100 P~Y~~~~-~Gp---~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
-+|+=++ .|- -..|.-++.+...|+.+-.| ++|..+++. |.+..+..|..
T Consensus 121 ~~YePe~fPglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~-a~~~i~~~l~~ 174 (179)
T PRK00394 121 IEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVITG-AKSEEDAEK-AVEKILEKLEE 174 (179)
T ss_pred cEECcccCceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHH-HHHHHHHHHHH
Confidence 2343110 000 02455677777789998777 689999988 55666666653
No 49
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=54.35 E-value=4.6 Score=24.79 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.9
Q ss_pred cCCCCceeeecCCcEEEE
Q 021322 290 KFPEGSSVLHRDNQWVAW 307 (314)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~ 307 (314)
.+|.|++|.+.++-|||=
T Consensus 2 ~~P~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVAD 19 (28)
T ss_dssp SSEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEeCCCCEEEEE
Confidence 589999999999999984
No 50
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=53.96 E-value=1.6e+02 Score=26.07 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=62.9
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC----C---------cccchHHHHHHHHHHhc----
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----D---------DSVLYKNVLQELAQKEA---- 96 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~----d---------~~~n~ks~LqE~~qk~~---- 96 (314)
+.-+..+.-.|...-. |+.+.++|+. |++.+++.|...+... + -.....=.|..++...+
T Consensus 46 P~~t~lIf~sGKivit--Gaks~~~~~~-a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~~la~~~~~~~~ 122 (174)
T cd00652 46 PKTTALIFSSGKMVIT--GAKSEEDAKL-AARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEELALKHPENAS 122 (174)
T ss_pred CcEEEEEECCCEEEEE--ecCCHHHHHH-HHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHHHHHhhhhcccE
Confidence 4456666777887655 4688888876 5677777776544211 1 01223335677776554
Q ss_pred -----CCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 97 -----YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 97 -----~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
++.-.|++. .+.-++.+.-.|+.+-.| ++|..++++ |.+..+..|
T Consensus 123 YePe~fpgli~r~~------~pk~t~lIF~sGkvvitG-aks~~~~~~-a~~~i~~~L 172 (174)
T cd00652 123 YEPELFPGLIYRMD------EPKVVLLIFVSGKIVITG-AKSREDIYE-AVEKIYPIL 172 (174)
T ss_pred ECCccCceEEEEec------CCcEEEEEEcCCEEEEEe-cCCHHHHHH-HHHHHHHHH
Confidence 111223322 245566777789887777 688888888 455555554
No 51
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=52.26 E-value=13 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=14.1
Q ss_pred CCceeee-cCCcEEEEec
Q 021322 293 EGSSVLH-RDNQWVAWTD 309 (314)
Q Consensus 293 ~~~~~~~-~~~~~~~~~~ 309 (314)
+|=||.| .|+.||||..
T Consensus 28 ~~PTVs~L~~~~w~AV~~ 45 (75)
T PF08029_consen 28 KSPTVSPLADEDWVAVHA 45 (75)
T ss_dssp SS-EEEE-SSTTEEEEEE
T ss_pred CCCceeecCCCCEEEEEE
Confidence 6779999 9999999974
No 52
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=46.38 E-value=31 Score=26.36 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=24.2
Q ss_pred EEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 124 EVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 124 ~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
..++.|.|.+++.|+++|-..+.+.|....
T Consensus 13 ~l~a~G~~~~~~~A~~~A~~~la~~i~~~v 42 (92)
T PF02169_consen 13 YLYAVGSGSSREQAKQDALANLAEQISVVV 42 (92)
T ss_pred EEEEEEcccChHHHHHHHHHHHHHheeEEE
Confidence 456789999999999998888888776543
No 53
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=36.15 E-value=1.4e+02 Score=20.24 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=14.3
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 021322 129 QGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 129 g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
....+|++|+..+++ ++..|.
T Consensus 22 ~GF~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 22 RGFKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred CCCCcHHHHHHHHHH-HHHHHH
Confidence 336999999996655 554443
No 54
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=35.17 E-value=14 Score=23.13 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=10.2
Q ss_pred hHHhhhhcccccccEEEccCC
Q 021322 266 IAQSVRADGRTCKIIRVRPNR 286 (314)
Q Consensus 266 i~~~~~~~~~~~~~~~~~~~~ 286 (314)
|.-..|.|+++++-|||+|-|
T Consensus 5 I~~s~RpDGt~RK~irvr~GY 25 (27)
T PF09282_consen 5 IPASQRPDGTWRKEIRVRPGY 25 (27)
T ss_dssp E--EE-TTS-EE--EE--TT-
T ss_pred cCcccCCCCCcccceeccCCc
Confidence 444678999999999999876
No 55
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=30.23 E-value=32 Score=28.24 Aligned_cols=16 Identities=44% Similarity=0.889 Sum_probs=14.8
Q ss_pred CCCCceeeecCCcEEE
Q 021322 291 FPEGSSVLHRDNQWVA 306 (314)
Q Consensus 291 ~~~~~~~~~~~~~~~~ 306 (314)
||.|.||+-..++|..
T Consensus 34 FpdGlTv~Da~GqW~~ 49 (104)
T PF12098_consen 34 FPDGLTVLDAYGQWRD 49 (104)
T ss_pred CCCCceEEeccceEec
Confidence 6789999999999987
No 56
>PF10621 FpoO: F420H2 dehydrogenase subunit FpoO ; InterPro: IPR018288 This entry represents the FpoO subunit of membrane-bound multi-subunit F420H2 dehydrogenase, which oxidises the reduced coenzyme F420H2 to coenzyme F420 and feeds the electrons via an FeS cluster into an energy-conserving electron transport chain [, ]. This enzyme plays a role in the methanogenic pathway in methanogenic archaea. Reduced coenzyme F420H2 is the major cytoplasmic electron carrier of methanogens and a reversible hydride donor, much like NADH []. F420H2 + COB-S-S-CoM = F420 + CoM-SH + CoB-SH Where CoB-S-S-CoM (the heterosulphide of 2-mercaptoethanesulphonate and 7-mercaptoheptanoylthreonine phosphate) is the terminal electron acceptor of the methanogenic pathway, and is reduced with the concomitant generation of a transmembrane proton potential and ATP synthesis. The FpoO subunit of F420H2 dehydrogenase probably participates in the reduction of methanophenazine, where it acts as a special mechanism for the reduction of the methanogenic cofactor [].
Probab=29.00 E-value=28 Score=28.99 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=17.7
Q ss_pred ccccccc-------EEEccCCCCccCCCCc
Q 021322 273 DGRTCKI-------IRVRPNRPNMKFPEGS 295 (314)
Q Consensus 273 ~~~~~~~-------~~~~~~~~~~~~~~~~ 295 (314)
++-||++ |||+.-.=+++||+|+
T Consensus 3 DCdLCg~~~Pt~~PvrV~~Pr~~~~yPeGv 32 (119)
T PF10621_consen 3 DCDLCGRAIPTVCPVRVFAPRLTLAYPEGV 32 (119)
T ss_pred ccchhcCcCCceeEEEeecchhhccCcchH
Confidence 4556654 7888777899999996
No 57
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=28.03 E-value=4.2e+02 Score=23.38 Aligned_cols=105 Identities=23% Similarity=0.174 Sum_probs=60.7
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC----C---------cccchHHHHHHHHHHhcC---
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ----D---------DSVLYKNVLQELAQKEAY--- 97 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~----d---------~~~n~ks~LqE~~qk~~~--- 97 (314)
+.=++.+.-.|...-. |+.+.++|+. |++.+++.|...+... + -.....=.|.++++....
T Consensus 46 Pk~t~lIF~sGKiviT--Gaks~~~~~~-a~~~~~~~l~~~g~~~~~~~~f~v~nIvat~~~~~~i~L~~la~~~~~~~~ 122 (174)
T cd04517 46 PRATASVWSSGKITIT--GATSEEEAKQ-AARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDELAAKNRSSAS 122 (174)
T ss_pred CcEEEEEECCCeEEEE--ccCCHHHHHH-HHHHHHHHHHHcCCCcccCCceEEEEEEEEEeCCCcccHHHHHHhchhhcE
Confidence 3345556667877655 4688888877 5677767665543211 1 012233347777764321
Q ss_pred ------CCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 98 ------ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 98 ------~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
+.-.|++. .+.-++.+...|+.+-.| +++..++++. .+..+..|
T Consensus 123 YePE~fPgliyr~~------~p~~t~lIF~sGkivitG-aks~~~~~~a-~~~i~pil 172 (174)
T cd04517 123 YEPELHPGVVYRIT------GPRATLSIFSTGSVTVTG-ARSMEDVREA-VEKIYPIV 172 (174)
T ss_pred eCCccCCEEEEEEC------CCcEEEEEeCCCEEEEEe-cCCHHHHHHH-HHHHHHHH
Confidence 11123322 245667777789887777 6888888884 45555444
No 58
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.03 E-value=4.9e+02 Score=23.06 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC---C---------cccchHHHHHHHHHHhcCCCC
Q 021322 33 ASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ---D---------DSVLYKNVLQELAQKEAYALP 100 (314)
Q Consensus 33 ~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~---d---------~~~n~ks~LqE~~qk~~~~~P 100 (314)
.++-+..+.-.|...-. ||.+.++|+. |++.+++.|...++.. + -.....=.|.+++..+. ..-
T Consensus 45 ~Pk~t~lIF~SGKiviT--Gaks~e~a~~-a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~l~~~i~L~~la~~~~-~~~ 120 (174)
T cd04516 45 EPKTTALIFSSGKMVCT--GAKSEDDSKL-AARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEGLAHAHK-QFS 120 (174)
T ss_pred CCcEEEEEECCCeEEEE--ecCCHHHHHH-HHHHHHHHHHHcCCCCCCCceEEEEEEEEEECCCcccHHHHHHhCh-hcc
Confidence 34566677778887655 4688888876 5666667776554311 1 01223335677775322 112
Q ss_pred cEEEee-cCC---CCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 021322 101 VYNTKQ-SGE---SHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL 149 (314)
Q Consensus 101 ~Y~~~~-~Gp---~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L 149 (314)
+|+=+. .|- -..+.-++.+...|+.+-.| +++..++++ |-+..+-.|
T Consensus 121 ~YePE~fPgliyr~~~pk~~~liF~sGkvvitG-aks~~~~~~-a~~~i~p~L 171 (174)
T cd04516 121 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG-AKSREEIYQ-AFENIYPIL 171 (174)
T ss_pred EeCCccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHH
Confidence 333110 000 01244566677789887766 578777776 334444333
No 59
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=24.57 E-value=48 Score=26.76 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.0
Q ss_pred Cceeee-cCCcEEEEec
Q 021322 294 GSSVLH-RDNQWVAWTD 309 (314)
Q Consensus 294 ~~~~~~-~~~~~~~~~~ 309 (314)
|=||.| .|+.||||..
T Consensus 53 ~PTVs~l~~~~w~AV~~ 69 (100)
T TIGR03455 53 GPTVSPLADEGWVAVHA 69 (100)
T ss_pred CCCcCcCCCCCeEEEEE
Confidence 558889 7788999974
No 60
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=23.42 E-value=87 Score=37.01 Aligned_cols=72 Identities=24% Similarity=0.173 Sum_probs=50.8
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEE--------------EEECCEEeeecccCCHHHHHHHHHHHHH
Q 021322 82 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVST--------------VEVGGEVFSGQGAKSKKQAEMSAAKVAY 146 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~--------------V~v~g~~~~~g~G~SKK~Akq~AA~~AL 146 (314)
...++.+.+-|-...|+.|.+.. .+.++.|..++... |.+.+.....|.|...+.||..||+.|+
T Consensus 1514 ~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~ 1593 (1606)
T KOG0701|consen 1514 KLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAAL 1593 (1606)
T ss_pred ecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHH
Confidence 33455788999999999999985 56677776655433 2223333345678888999999998888
Q ss_pred HHhcCCC
Q 021322 147 MRLKEPN 153 (314)
Q Consensus 147 ~~L~~~~ 153 (314)
+.|....
T Consensus 1594 ~ll~~~~ 1600 (1606)
T KOG0701|consen 1594 KLLKKLG 1600 (1606)
T ss_pred HHHHHhh
Confidence 8887654
No 61
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.16 E-value=2e+02 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 112 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 112 ~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
+|.-++.+.-.|+..-+| ++|..+|+. |++..++.|...
T Consensus 45 ~Pk~t~lIF~SGKiviTG-aks~e~a~~-a~~~i~~~L~~~ 83 (174)
T cd04516 45 EPKTTALIFSSGKMVCTG-AKSEDDSKL-AARKYARIIQKL 83 (174)
T ss_pred CCcEEEEEECCCeEEEEe-cCCHHHHHH-HHHHHHHHHHHc
Confidence 566778888899998777 699999998 566666666543
No 62
>smart00535 RIBOc Ribonuclease III family.
Probab=21.37 E-value=15 Score=29.89 Aligned_cols=64 Identities=17% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
..|.+++.+.|+. .|......... .......++.++.|++.+||.+.+.+.+.|.+++.+.+.+
T Consensus 61 ~~la~~a~~~~l~--~~i~~~~~~~~-~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~~ 124 (129)
T smart00535 61 ETLARLAKKLGLG--EFIRLGRGEAI-SGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGP 124 (129)
T ss_pred HHHHHHHHHCCcH--HHHccCchHhh-cCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578889988864 34332211111 1122345677889999999999999987777777666553
No 63
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=4e+02 Score=26.97 Aligned_cols=66 Identities=20% Similarity=0.085 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCCcEEEeecCCC--CCCeEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 84 YKNVLQELAQKEAYALPVYNTKQSGES--HAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~--h~~~F~~~V~v~--g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
-...+|..+++-++.. ..++. +-. .-|.|.. ++.. +..+..|.|.||++|+-.|...+++.+..+.
T Consensus 19 t~~~~q~~l~~~gitr-I~~~t--~Ld~~gIPv~~a-~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~sAe~ 88 (398)
T COG1944 19 TLAAFQPLLAALGITR-IEDIT--WLDRLGIPVVWA-VRPRALGLSVSQGKGATKAAARVSALMEALERLSAEY 88 (398)
T ss_pred HHHHHHHHHHhcCcee-eeeee--ccccCCCceEEE-eeeccccceeecCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 5567777777777652 12221 111 2333332 2332 4556779999999999999999999987665
No 64
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.63 E-value=2.1e+02 Score=26.19 Aligned_cols=68 Identities=28% Similarity=0.322 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEeecC----CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHH--HHHhcCC
Q 021322 82 VLYKNVLQELAQKEAYALPVYNTKQSG----ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA--YMRLKEP 152 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~~~~P~Y~~~~~G----p~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~A--L~~L~~~ 152 (314)
.+.+-.|.|+|..-+.. +|+=.+.+ --+.|+-++.+.-.|+.+..| +.|+..|+..|.+-| |++|+..
T Consensus 34 ~~c~ldLk~ial~~~N~--ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg-A~se~~ar~aark~aRilqkLgf~ 107 (200)
T KOG3302|consen 34 LNCKLDLKEIALHARNA--EYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG-AKSEDSARLAARKYARILQKLGFP 107 (200)
T ss_pred ccceecHHHHhhhcccc--ccCcccccEEEEEEcCCceEEEEecCCcEEEec-cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 34455677777654432 34310000 013456677777789999887 799999999666655 5566533
Done!