Query 021322
Match_columns 314
No_of_seqs 231 out of 1915
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 4.2E-31 1.4E-35 232.6 14.3 148 3-153 13-174 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 99.9 5.4E-27 1.9E-31 214.6 15.5 144 2-152 21-199 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 1.1E-23 3.6E-28 193.1 17.1 140 3-152 4-226 (236)
4 3adg_A F21M12.9 protein; HYL1, 99.8 7.1E-20 2.4E-24 138.7 10.4 70 81-150 2-72 (73)
5 3adj_A F21M12.9 protein; HYL1, 99.8 7.2E-20 2.5E-24 139.8 9.1 71 81-151 3-74 (76)
6 1di2_A XLRBPA, double stranded 99.8 1.9E-19 6.6E-24 134.8 8.9 66 84-150 2-68 (69)
7 3adl_A RISC-loading complex su 99.8 3.8E-19 1.3E-23 139.8 10.2 73 79-152 12-85 (88)
8 2cpn_A TAR RNA-binding protein 99.8 5.1E-19 1.7E-23 139.3 10.5 73 79-152 13-86 (89)
9 1uhz_A Staufen (RNA binding pr 99.8 7.4E-19 2.5E-23 138.4 10.1 72 80-152 4-76 (89)
10 2khx_A Ribonuclease 3; drosha, 99.8 3.5E-19 1.2E-23 139.1 7.4 71 82-152 1-77 (85)
11 1ekz_A DSRBDIII, maternal effe 99.8 3.4E-19 1.1E-23 135.9 5.5 70 80-151 5-75 (76)
12 2dix_A Interferon-inducible do 99.8 1.7E-18 5.9E-23 134.7 9.5 71 80-152 6-77 (84)
13 1x49_A Interferon-induced, dou 99.8 1.5E-18 5.2E-23 138.7 9.0 74 80-154 12-86 (97)
14 2l2n_A Hyponastic leave 1; DSR 99.8 1.7E-18 5.7E-23 139.8 8.7 75 79-153 14-89 (103)
15 1x48_A Interferon-induced, dou 99.8 3.1E-18 1E-22 134.5 9.5 72 81-154 5-77 (88)
16 3llh_A RISC-loading complex su 99.7 2.9E-18 9.8E-23 135.2 9.0 74 79-154 11-85 (90)
17 1whq_A RNA helicase A; double- 99.7 1.5E-18 5.1E-23 139.3 6.9 72 81-153 5-77 (99)
18 2b7t_A Double-stranded RNA-spe 99.7 4.8E-18 1.6E-22 128.6 7.6 68 81-151 3-71 (73)
19 1uil_A Double-stranded RNA-bin 99.7 7.2E-18 2.4E-22 138.3 9.1 75 81-156 25-104 (113)
20 2nug_A Ribonuclease III, RNAse 99.7 1.7E-18 6E-23 156.3 4.1 134 7-150 78-218 (221)
21 1x47_A DGCR8 protein; structur 99.7 2.9E-17 9.9E-22 131.4 10.4 73 80-154 14-87 (98)
22 2dmy_A Spermatid perinuclear R 99.7 3.8E-17 1.3E-21 130.5 10.3 70 79-151 13-83 (97)
23 1t4n_A Ribonuclease III; DSRBD 99.7 6.4E-18 2.2E-22 134.2 5.0 69 81-150 5-74 (94)
24 1o0w_A Ribonuclease III, RNAse 99.7 1.4E-17 4.7E-22 153.5 6.4 143 7-152 104-250 (252)
25 2l33_A Interleukin enhancer-bi 99.7 3.8E-17 1.3E-21 129.2 7.7 71 81-154 13-84 (91)
26 2ljh_A Double-stranded RNA-spe 99.7 9.6E-17 3.3E-21 131.8 8.8 71 80-156 35-106 (114)
27 1whn_A Hypothetical protein ri 99.7 1.9E-16 6.6E-21 132.5 10.8 71 80-152 24-95 (128)
28 1t4o_A Ribonuclease III; RNT1P 99.7 4.2E-17 1.4E-21 134.0 6.0 70 80-150 6-76 (117)
29 3n3w_A Ribonuclease III; nucle 99.7 4.2E-19 1.4E-23 163.6 -7.0 142 7-151 102-247 (248)
30 3adg_A F21M12.9 protein; HYL1, 99.7 3.2E-16 1.1E-20 118.5 9.0 70 2-72 2-72 (73)
31 2a11_A Ribonuclease III, RNAse 99.6 2.3E-18 7.9E-23 157.5 -6.9 144 7-153 84-233 (242)
32 1qu6_A Protein kinase PKR; dsR 99.6 5.2E-16 1.8E-20 136.2 7.7 73 81-154 12-85 (179)
33 2b7v_A Double-stranded RNA-spe 99.6 9.4E-16 3.2E-20 115.3 7.9 65 81-151 3-68 (71)
34 3adj_A F21M12.9 protein; HYL1, 99.6 1.1E-15 3.8E-20 116.5 7.5 70 3-73 4-74 (76)
35 1di2_A XLRBPA, double stranded 99.6 2.3E-15 8E-20 112.4 7.2 67 4-72 1-68 (69)
36 3p1x_A Interleukin enhancer-bi 99.6 4E-15 1.4E-19 113.3 8.3 69 80-154 5-74 (75)
37 1uhz_A Staufen (RNA binding pr 99.6 5.4E-15 1.8E-19 116.2 8.5 70 2-73 5-75 (89)
38 1ekz_A DSRBDIII, maternal effe 99.6 3.2E-15 1.1E-19 113.8 6.9 69 2-73 6-75 (76)
39 2cpn_A TAR RNA-binding protein 99.6 5.1E-15 1.7E-19 116.4 8.3 71 2-74 15-86 (89)
40 3adl_A RISC-loading complex su 99.6 5.4E-15 1.8E-19 116.0 8.4 71 2-74 14-85 (88)
41 2dix_A Interferon-inducible do 99.6 1.2E-14 4.1E-19 113.0 9.4 70 2-74 7-77 (84)
42 2khx_A Ribonuclease 3; drosha, 99.6 3.6E-15 1.2E-19 116.3 6.2 70 3-73 1-76 (85)
43 2l2n_A Hyponastic leave 1; DSR 99.6 5.2E-15 1.8E-19 119.3 7.1 73 2-75 16-89 (103)
44 2b7t_A Double-stranded RNA-spe 99.5 1.9E-14 6.5E-19 108.8 7.4 69 1-73 2-71 (73)
45 3llh_A RISC-loading complex su 99.5 2E-14 7E-19 113.0 7.8 71 2-75 13-84 (90)
46 2yt4_A Protein DGCR8; DSRBD, R 99.5 3.9E-14 1.3E-18 129.3 10.0 72 80-153 20-92 (232)
47 1x49_A Interferon-induced, dou 99.5 1.5E-14 5.1E-19 115.5 6.3 70 3-74 14-84 (97)
48 1whq_A RNA helicase A; double- 99.5 1.6E-14 5.6E-19 115.7 6.3 71 3-75 6-77 (99)
49 1x48_A Interferon-induced, dou 99.5 3.7E-14 1.3E-18 111.2 7.6 71 2-75 5-76 (88)
50 1uil_A Double-stranded RNA-bin 99.5 4.4E-14 1.5E-18 115.7 7.1 71 3-75 26-101 (113)
51 1x47_A DGCR8 protein; structur 99.5 1.5E-13 5.3E-18 109.7 8.2 70 2-74 15-85 (98)
52 3rv0_A K. polysporus DCR1; RNA 99.4 1.5E-15 5.3E-20 145.9 -5.3 140 7-153 171-322 (341)
53 2dmy_A Spermatid perinuclear R 99.4 1.8E-13 6E-18 109.2 6.9 68 2-73 15-83 (97)
54 1whn_A Hypothetical protein ri 99.4 3.1E-13 1.1E-17 113.0 8.5 70 2-73 25-94 (128)
55 1t4n_A Ribonuclease III; DSRBD 99.4 6.6E-14 2.3E-18 111.1 4.0 68 3-72 6-74 (94)
56 1t4o_A Ribonuclease III; RNT1P 99.4 2.5E-13 8.6E-18 111.6 5.3 69 2-72 7-76 (117)
57 2l33_A Interleukin enhancer-bi 99.4 4.9E-13 1.7E-17 105.5 6.2 68 3-74 14-82 (91)
58 2ljh_A Double-stranded RNA-spe 99.4 6.9E-13 2.4E-17 108.8 6.2 67 2-75 36-103 (114)
59 2b7v_A Double-stranded RNA-spe 99.3 2E-12 6.7E-17 97.0 7.1 65 2-73 3-68 (71)
60 2l3j_A Double-stranded RNA-spe 99.3 1.1E-11 3.6E-16 113.4 9.0 69 82-153 4-73 (236)
61 3p1x_A Interleukin enhancer-bi 99.2 1.4E-11 4.9E-16 93.6 6.1 66 2-74 6-72 (75)
62 2nug_A Ribonuclease III, RNAse 99.2 1.4E-11 4.9E-16 110.9 6.6 70 2-73 149-219 (221)
63 1o0w_A Ribonuclease III, RNAse 99.2 2E-11 6.7E-16 112.3 7.4 71 2-73 178-249 (252)
64 3c4b_A Endoribonuclease dicer; 99.1 9.6E-12 3.3E-16 114.8 -0.6 108 40-151 154-263 (265)
65 3n3w_A Ribonuclease III; nucle 99.1 1.4E-11 4.6E-16 113.4 0.0 71 2-73 176-247 (248)
66 2a11_A Ribonuclease III, RNAse 99.1 1.4E-11 4.8E-16 112.4 0.0 72 2-74 161-232 (242)
67 3rv0_A K. polysporus DCR1; RNA 98.5 2.1E-08 7.1E-13 96.3 0.0 65 3-73 254-320 (341)
68 3c4b_A Endoribonuclease dicer; 97.9 7E-06 2.4E-10 75.4 4.5 64 3-73 200-263 (265)
69 2kou_A Dicer-like protein 4; A 96.2 0.0074 2.5E-07 48.0 5.6 70 82-154 4-83 (102)
70 2qvw_A GLP_546_48378_50642; di 95.9 0.0009 3.1E-08 70.2 -1.1 109 7-152 376-498 (756)
71 3htx_A HEN1; HEN1, small RNA m 91.0 0.25 8.6E-06 52.6 5.9 72 82-157 17-101 (950)
72 2kou_A Dicer-like protein 4; A 86.8 0.61 2.1E-05 36.7 4.0 71 4-77 5-84 (102)
73 2db2_A KIAA0890 protein; DSRM 77.6 2 6.8E-05 34.6 3.7 71 80-153 15-91 (119)
74 3htx_A HEN1; HEN1, small RNA m 66.2 5.4 0.00018 42.7 4.8 39 35-74 58-96 (950)
75 2z8u_A Tata-box-binding protei 40.6 1E+02 0.0036 26.4 8.1 106 34-150 57-183 (188)
76 1ais_A TBP, protein (tata-bind 38.5 90 0.0031 26.6 7.3 106 34-150 53-179 (182)
77 1mp9_A Tata-binding protein; t 31.8 1.3E+02 0.0043 26.1 7.2 108 32-150 55-183 (198)
78 3eik_A Tata-box-binding protei 22.7 2.2E+02 0.0074 25.1 7.1 106 34-150 87-213 (218)
79 1nh8_A ATP phosphoribosyltrans 20.3 49 0.0017 30.8 2.4 16 294-309 256-272 (304)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.97 E-value=4.2e-31 Score=232.63 Aligned_cols=148 Identities=28% Similarity=0.406 Sum_probs=133.2
Q ss_pred CChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCC----
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ---- 77 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~---- 77 (314)
.|||+.||||||++++. |.|.+. ..||+|.+.|++.|.|+|..++.|. |.+||.|++.||+.+|+.|......
T Consensus 13 ~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~~~~~~~p~ 90 (179)
T 1qu6_A 13 GFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEILNKEKKAVSPL 90 (179)
T ss_dssp CSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred CCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecC-CCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 58999999999999987 899884 7899999999999999998888887 5999999999999999999864311
Q ss_pred ---------CCcccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 021322 78 ---------QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR 148 (314)
Q Consensus 78 ---------~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~ 148 (314)
.....||+++||||||++++.+ .|++.+.|++|.++|+|+|.|+|+.|+.|.|.|||+||+.||+.||+.
T Consensus 91 ~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~ 169 (179)
T 1qu6_A 91 LLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQ 169 (179)
T ss_dssp SCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHH
Confidence 1135799999999999999987 999988999999999999999999888999999999999999999999
Q ss_pred hcCCC
Q 021322 149 LKEPN 153 (314)
Q Consensus 149 L~~~~ 153 (314)
|....
T Consensus 170 L~~~~ 174 (179)
T 1qu6_A 170 ILSEE 174 (179)
T ss_dssp HHHCC
T ss_pred Hhccc
Confidence 97654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=214.57 Aligned_cols=144 Identities=23% Similarity=0.205 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC--C-
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF--Q- 77 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~--~- 77 (314)
.+|||+.||||||++++..|.|.+. ..||+ +.|++.|.|+|..|+.|. |.+||.|++.||+.||..|..... .
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~~~~~~ 97 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPDFVKQTS 97 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHSTTTTTC--
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecC-CCCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4799999999999999988999984 67887 889999999999998888 599999999999999999986411 0
Q ss_pred ------------------CC----------cccchHHHHHHHHHHhcCCCCcEE--E-eecCCCCCCeEEEEEEECCEEe
Q 021322 78 ------------------QD----------DSVLYKNVLQELAQKEAYALPVYN--T-KQSGESHAPTFVSTVEVGGEVF 126 (314)
Q Consensus 78 ------------------~d----------~~~n~ks~LqE~~qk~~~~~P~Y~--~-~~~Gp~h~~~F~~~V~v~g~~~ 126 (314)
.+ ...|||+.||| ||++++.+|.|+ + .+.||+|.+.|+|.|. + .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~ 173 (232)
T 2yt4_A 98 EEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HT 173 (232)
T ss_dssp ------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EE
T ss_pred ccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EE
Confidence 00 13589999999 999999999999 4 5789999999999886 4 45
Q ss_pred eecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 127 SGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 127 ~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
+.|.|+|||+|||.||+.||+.|...
T Consensus 174 ~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 174 VRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 77999999999999999999999855
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.91 E-value=1.1e-23 Score=193.10 Aligned_cols=140 Identities=34% Similarity=0.372 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc------
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK------ 75 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~------ 75 (314)
.+||+.|++|++.. ..|.|.+. ..||.|.+.|+++|.|+|..+ .|. |.|||.|++.||+.||+.|....
T Consensus 4 ~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~l~~~~~~~~~~ 79 (236)
T 2l3j_A 4 VLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQFPNASEAH 79 (236)
T ss_dssp CCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESHHHHHHHHHHHHHHHHHTTCSSCSCCC
T ss_pred CCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE-EEe-cCChHHHHHHHHHHHHHHHHhccccccch
Confidence 57889999998763 45899984 689999999999999999886 566 59999999999999999886421
Q ss_pred ------------CCC---------------------------------------------------------------Cc
Q 021322 76 ------------FQQ---------------------------------------------------------------DD 80 (314)
Q Consensus 76 ------------~~~---------------------------------------------------------------d~ 80 (314)
+.. ..
T Consensus 80 ~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~ 159 (236)
T 2l3j_A 80 LAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPS 159 (236)
T ss_dssp CSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCS
T ss_pred hhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCC
Confidence 000 01
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
..|||++|||| +..|.|++ .+.||.|.++|+|.|.|+|+.+ .|.|+|||+|||.||+.||+.|...
T Consensus 160 ~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 160 GKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 36999999999 56799996 6789999999999999999987 7999999999999999999999754
No 4
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.82 E-value=7.1e-20 Score=138.67 Aligned_cols=70 Identities=40% Similarity=0.475 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhc
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G-~SKK~Akq~AA~~AL~~L~ 150 (314)
..|||+.||||||++++..|.|++...||+|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||+.|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999998656999999999999999999999999 9999999999999999985
No 5
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.81 E-value=7.2e-20 Score=139.82 Aligned_cols=71 Identities=39% Similarity=0.630 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
..|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999997 67899999999999999999999999999999999999999999964
No 6
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.79 E-value=1.9e-19 Score=134.76 Aligned_cols=66 Identities=30% Similarity=0.368 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999997 67899999999999999998 9999999999999999999999985
No 7
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=139.79 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=67.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
....|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 35679999999999999999999997 67899999999999999998 899999999999999999999999754
No 8
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.79 E-value=5.1e-19 Score=139.32 Aligned_cols=73 Identities=29% Similarity=0.367 Sum_probs=68.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
....|||++||||||++++..|.|++ .+.||+|.++|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999997 67899999999999999998 899999999999999999999999754
No 9
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.78 E-value=7.4e-19 Score=138.37 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=67.0
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
...|||++||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 3579999999999999999999997 67899999999999999997 889999999999999999999999744
No 10
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=139.07 Aligned_cols=71 Identities=32% Similarity=0.339 Sum_probs=65.4
Q ss_pred cchHHHHHHHHHH-----hcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 82 VLYKNVLQELAQK-----EAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 82 ~n~ks~LqE~~qk-----~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
.|||+.||||||+ +++..|.|++ .+.||+|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 4899999999998 4677899998 678999999999999999999999999999999999999999998654
No 11
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.76 E-value=3.4e-19 Score=135.94 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
...|||+.||||||++++. |.|++ .+.||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999 99998 6789999999999999999 889999999999999999999999864
No 12
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.76 E-value=1.7e-18 Score=134.73 Aligned_cols=71 Identities=32% Similarity=0.379 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
...|||+.||||||+++ ..|.|++ .+.||.|.++|+|.|.|+| .++.|.|+|||+|||+||+.||+.|...
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999998 6899997 6789999999999999999 8899999999999999999999999744
No 13
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.76 E-value=1.5e-18 Score=138.68 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=68.5
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
...|||++||||||++++. |.|++ .+.||+|.++|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.....
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5689999999999999997 79996 67899999999999999999999999999999999999999999986654
No 14
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=1.7e-18 Score=139.85 Aligned_cols=75 Identities=36% Similarity=0.461 Sum_probs=66.1
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhcCCC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G-~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
....|||+.||||||++++..|.|++...||+|.+.|++.|.|+|+.++.|.| +|||+|||+||+.||+.|....
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999998656999999999999999999999999 9999999999999999998554
No 15
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.75 E-value=3.1e-18 Score=134.53 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=66.9
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~-~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
..|||++||||||++++.+ .|+ .+.||.|.+ +|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4699999999999999976 999 889999999 79999999999999999999999999999999999987644
No 16
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=135.15 Aligned_cols=74 Identities=32% Similarity=0.393 Sum_probs=59.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
+...|||+.||||||+++. .|.|++ .+.||+|.+.|++.|.|+|+ ++.|.|+|||+|||.||+.||+.|.....
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 85 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSM 85 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhccc
Confidence 4578999999999999875 799997 68999999999999999998 67899999999999999999999976643
No 17
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.74 E-value=1.5e-18 Score=139.25 Aligned_cols=72 Identities=26% Similarity=0.273 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g-~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
..|||++||||||++ +..|.|++.+.||.|.++|+|.|.|+| +.++.|.|+|||+|||+||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999 888999998889999999999999999 688999999999999999999999997644
No 18
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.73 E-value=4.8e-18 Score=128.64 Aligned_cols=68 Identities=38% Similarity=0.487 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
..|||+.||||||+ +..|.|++ .+.||+|+++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46999999999995 77899997 6789999999999999999887 899999999999999999999874
No 19
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.73 E-value=7.2e-18 Score=138.32 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=68.5
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHhcCCCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS 155 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v-----~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~~ 155 (314)
..|||++||||||++++ .|.|++.+.||+|.++|+|.|.| +|+.++.|.|+|||+|||.||+.||+.|......
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~i 103 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVI 103 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 46999999999999999 89999888999999999999999 6888999999999999999999999999865443
Q ss_pred C
Q 021322 156 Q 156 (314)
Q Consensus 156 ~ 156 (314)
+
T Consensus 104 e 104 (113)
T 1uil_A 104 E 104 (113)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.72 E-value=1.7e-18 Score=156.33 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHH--HHHHHHHHhccccC----CCCc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE--AAKVALMSLSLDKF----QQDD 80 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~--AA~~aL~~L~~~~~----~~d~ 80 (314)
..|.++|.+.|+. .|.....|... .++.++.|++.+||.+.+.+... |.+++...+.+... ....
T Consensus 78 ~~la~~a~~l~l~--~~l~~~~~~~~-------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~~~~~ 148 (221)
T 2nug_A 78 EFFNLLAQKLELH--KFIRIKRGKIN-------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRV 148 (221)
T ss_dssp HHHHHHHHTTTGG--GTCBSCTTCCC-------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcChH--HhhccCCCccc-------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 4688899998874 44444334322 46678899999999999887665 55555544433211 1223
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
..|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+ ++.|.|.|||+||+.||+.||+.|.
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999997 67899999999999999999 9999999999999999999999996
No 21
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.72 E-value=2.9e-17 Score=131.43 Aligned_cols=73 Identities=26% Similarity=0.252 Sum_probs=67.4
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
+..|||+.||||||++++..|.|++ .+.||. +.|+|.|.|+|+.++.|.|+|||+|||+||+.||+.|.....
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 87 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFV 87 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999997 568887 999999999999999999999999999999999999985543
No 22
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.71 E-value=3.8e-17 Score=130.50 Aligned_cols=70 Identities=29% Similarity=0.365 Sum_probs=64.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 79 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 79 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
....|||+.||||||++ ..|.|++ .+.||.|.++|++.|.|+|+.+ .|.|+|||+|||+||+.||+.|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 35789999999999995 6899997 5789999999999999999998 899999999999999999999964
No 23
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.70 E-value=6.4e-18 Score=134.23 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
..|||+.||||||++ ...|.|++...||.|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 579999999999997 4679999966699999999999999998 89999999999999999999999774
No 24
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.69 E-value=1.4e-17 Score=153.51 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|.++|.+.++. .|.....|.... ......++.++.|++.+||.+.+.+...|.+++...+.+... ......|
T Consensus 104 ~~la~~a~~lgL~--~~l~~~~~e~~~-~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~d 180 (252)
T 1o0w_A 104 EVLAMVSRKMNLG--KFLFLGKGEEKT-GGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFD 180 (252)
T ss_dssp HHHHHHHHHTTHH--HHCBCCHHHHHT-TGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHcCcH--HhhccCchhhhc-CCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 4688899998864 344322211000 011123566789999999999999987666665555543321 1223579
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~ 152 (314)
||+.||||||++++..|.|++ .+.||.|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|..+
T Consensus 181 pkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999997 578999999999999999999999999999999999999999999754
No 25
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=129.18 Aligned_cols=71 Identities=34% Similarity=0.375 Sum_probs=64.6
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
..++|+.||||||+++ .|.|++ .+.||+|.++|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|....+
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3579999999999988 789997 6789999999999999999987 899999999999999999999986554
No 26
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.6e-17 Score=131.77 Aligned_cols=71 Identities=30% Similarity=0.375 Sum_probs=64.2
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCCCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ 156 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~~~ 156 (314)
...|||++||||||+ |.|++ .+.||.|+++|++.|.|+|+.+ .|.|+|||+|||+||+.||+.|.......
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~~ 106 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKDGA 106 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTTCC
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 468999999999984 89997 6789999999999999999999 89999999999999999999998655433
No 27
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.67 E-value=1.9e-16 Score=132.45 Aligned_cols=71 Identities=32% Similarity=0.323 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhcCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEP 152 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G-~SKK~Akq~AA~~AL~~L~~~ 152 (314)
...|||+.||||||++++..|.|++... .|.+.|++.|.|+|+.++.|.| +|||+|||+||+.||+.|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999999999998655 8999999999999999999999 999999999999999999643
No 28
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.67 E-value=4.2e-17 Score=134.04 Aligned_cols=70 Identities=21% Similarity=0.111 Sum_probs=63.4
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
...|||+.||||||+. ...|.|++...||.|.+.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.
T Consensus 6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999994 4779999855599999999999999999 89999999999999999999998774
No 29
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.67 E-value=4.2e-19 Score=163.63 Aligned_cols=142 Identities=23% Similarity=0.163 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccC---CCCcccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVL 83 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~---~~d~~~n 83 (314)
..|.+++.+.|+. .|.....|..... ...+-++.++.||+.+||.+.+.+...|.+++...+.+... ......|
T Consensus 102 ~~La~~a~~lgL~--~~l~~~~~e~~~~-g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~d 178 (248)
T 3n3w_A 102 KSFAKIANSLNLG--DFILMSVAEENNG-GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKD 178 (248)
T ss_dssp HHHHHHHHHTTGG--GTCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCcH--HHhhcCchhhhcC-CCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhccccccC
Confidence 4688999998874 4444222110000 11123567889999999999999987666666655554321 1224689
Q ss_pred hHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 84 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 84 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
||+.||||||++++..|.|++ .+.||.|.+.|+|.|.|+|+.++.|.|.|||+||+.||+.||+.|..
T Consensus 179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999997 58899999999999999999999999999999999999999998863
No 30
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.65 E-value=3.2e-16 Score=118.45 Aligned_cols=70 Identities=44% Similarity=0.675 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccc-cCCChhHHHHHHHHHHHhc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga-~SKK~Akq~AA~~aL~~L~ 72 (314)
+.|||+.||||||++++.+|.|.+..+||+|.+.|++.|.|+|..++.|. | .|||.|++.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeee-ccCCHHHHHHHHHHHHHHHhh
Confidence 47999999999999999999999976699999999999999999888887 6 8999999999999999885
No 31
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.3e-18 Score=157.54 Aligned_cols=144 Identities=22% Similarity=0.190 Sum_probs=39.7
Q ss_pred HHHHHHHHHc---CCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc---CCCCc
Q 021322 7 NQLQSYTQKK---NLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK---FQQDD 80 (314)
Q Consensus 7 S~LqE~cQK~---gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~---~~~d~ 80 (314)
..|.++|.+. |+. .|.....|+.... ...+-++.++.|++.+||.+.+.+...|.+++...+.+.. .....
T Consensus 84 ~~la~~a~~l~~~gL~--~~l~~~~~e~~~~-~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~ 160 (242)
T 2a11_A 84 QALADVARRLCAEGLG--VHVLLGRGEANTG-GADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGA 160 (242)
T ss_dssp HHHHHHHHHHSSSCSG--GGCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC---
T ss_pred HHHHHHHHHhhhhChH--HHhhcCchhhhcC-CCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4678899998 764 4444322211000 0112356678999999999999998765555555443321 11223
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
..|||+.||||||++++..|.|++...||.|.+.|+|.|.|+|+.++.|.|.|||+||+.||+.||+.|....
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 6799999999999999999999986699999999999999999999999999999999999999999997654
No 32
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.62 E-value=5.2e-16 Score=136.21 Aligned_cols=73 Identities=27% Similarity=0.357 Sum_probs=67.8
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
..|||+.||||||++++. |.|++ .+.||+|.++|++.|.|+|+.++.|.|+|||+|||+||+.||+.|.....
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~ 85 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK 85 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 478999999999999997 89997 57899999999999999999899999999999999999999999987654
No 33
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.62 E-value=9.4e-16 Score=115.30 Aligned_cols=65 Identities=34% Similarity=0.392 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 81 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 81 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
..||++.||||| ..|.|++ .+.||+|.+.|++.|.|+|+.+ .|.|+|||+|||.||+.||+.|..
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence 579999999994 6799997 6789999999999999999886 799999999999999999999864
No 34
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.61 E-value=1.1e-15 Score=116.48 Aligned_cols=70 Identities=37% Similarity=0.608 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.|||+.||||||++++..|.|.+ ...||+|.+.|++.|.|+|..++.|. |.|||.|++.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA-TRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCC-BSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998 46899999999999999999888887 599999999999999999864
No 35
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.58 E-value=2.3e-15 Score=112.43 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhc
Q 021322 4 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 4 npkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~ 72 (314)
.||+.||||||++++..|.|.+ ...||+|.+.|++.|.|+|. ++.|. |.+||.|++.||+.+|..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~-G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGS-GTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEee-cCCHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998 56899999999999999997 88887 69999999999999999885
No 36
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=113.28 Aligned_cols=69 Identities=30% Similarity=0.290 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP 154 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~~ 154 (314)
..+||++.|+|++ ..|.|++ .+.||+|+++|++.|.|+|..+ .|.|+|||+|||+||+.||+.|....+
T Consensus 5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 3456666666553 4789997 6799999999999999999998 899999999999999999999987764
No 37
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.57 E-value=5.4e-15 Score=116.24 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++++..|.|.+ ...||+|.+.|++.|.|+|. +..|. |.+||+|++.||+.||..|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGT-GPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999998 46899999999999999996 77777 699999999999999999974
No 38
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.57 E-value=3.2e-15 Score=113.82 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++++. |.|.+ ...||+|.+.|++.|.|+| .++.|. |.+||.|++.||+.+|..|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~-G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGE-GNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 479999999999999998 99998 4789999999999999999 788887 599999999999999998864
No 39
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.57 E-value=5.1e-15 Score=116.39 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||++++.+|.|.+ ...||+|.+.|++.|.|+|. +..|. |.+||+|++.||+.||..|...
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999998 56899999999999999997 78787 5999999999999999998753
No 40
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.57 E-value=5.4e-15 Score=116.04 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||+.++..|.|.+ ...||+|.+.|++.|.|+|. ++.|. |.+||.|++.||+.||..|...
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHHcc
Confidence 469999999999999999999998 46899999999999999997 78787 6999999999999999998753
No 41
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.56 E-value=1.2e-14 Score=112.95 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||+++ ..|.|.+ ...||.|.+.|++.|.|+| .+..+. |.+||+|++.||+.||..|...
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGE-GTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEEC-SSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEee-eCCHHHHHHHHHHHHHHHHhcc
Confidence 3799999999999998 5799998 4689999999999999999 778887 5999999999999999999754
No 42
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=116.27 Aligned_cols=70 Identities=29% Similarity=0.408 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHH-----cCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 3 HLYKNQLQSYTQK-----KNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 3 knpkS~LqE~cQK-----~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
+|||+.||||||+ .++..|.|.+ ...||+|.+.|++.|.|+|..++.|. |.|||+|++.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~-G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEE-ESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHhH
Confidence 6899999999998 4677899998 46899999999999999999888888 599999999999999998865
No 43
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=5.2e-15 Score=119.31 Aligned_cols=73 Identities=41% Similarity=0.591 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccc-cCCChhHHHHHHHHHHHhcccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga-~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
.+|||+.||||||++++..|.|.+...||+|.+.|++.|.|+|..++.|. | .+||.|++.||+.||..|....
T Consensus 16 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~-G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 16 CYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ---CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEee-cCCCHHHHHHHHHHHHHHHHhccc
Confidence 47999999999999999999999976699999999999999999988887 6 8999999999999999997543
No 44
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.52 E-value=1.9e-14 Score=108.76 Aligned_cols=69 Identities=33% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 1 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 1 M~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
+..|||+.||||||+ +..|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||.|++.||+.||..|..
T Consensus 2 k~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 2 GPVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp CSSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEE-ESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-cCCHHHHHHHHHHHHHHHHhc
Confidence 467999999999997 55799998 4689999999999999999887 676 699999999999999999875
No 45
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=113.03 Aligned_cols=71 Identities=31% Similarity=0.391 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
.+|||+.||||||+++. .|.|.+ ...||+|.+.|++.|.|+|. +..|. |.|||+|++.||+.||..|....
T Consensus 13 ~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 13 GKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQ-GPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEE-eCCHHHHHHHHHHHHHHHHHhcc
Confidence 57999999999999986 699998 57899999999999999997 56677 69999999999999999998653
No 46
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=129.33 Aligned_cols=72 Identities=26% Similarity=0.264 Sum_probs=66.9
Q ss_pred cccchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 80 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
...|||+.||||||++++..|.|++ .+.||. +.|+|.|.|+|..++.|.|+|||+||++||+.||+.|....
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 92 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDF 92 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999997 578887 99999999999999999999999999999999999998753
No 47
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.51 E-value=1.5e-14 Score=115.46 Aligned_cols=70 Identities=30% Similarity=0.486 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
+|||+.||||||++++. |.|.+ ...||+|.+.|++.|.|+|..++.|. |.+||+|++.||+.||..|...
T Consensus 14 ~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 14 GFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp THHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEE-ESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999996 79987 47899999999999999999888888 5999999999999999999864
No 48
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.51 E-value=1.6e-14 Score=115.65 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcc-eeeeccccccCCChhHHHHHHHHHHHhcccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDG-QTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g-~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
+|||+.||||||++ +..|.|.+...||.|.+.|++.|.|+| ..++.+. |.+||+|++.||+.||..|....
T Consensus 6 ~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 6 SGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGN-STNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEE-ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEec-cCCHHHHHHHHHHHHHHHHHhhC
Confidence 69999999999999 778999997789999999999999999 6888887 59999999999999999998643
No 49
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.50 E-value=3.7e-14 Score=111.20 Aligned_cols=71 Identities=31% Similarity=0.353 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCc-ceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHAS-RFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~-~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
.+|||+.||||||++++.+ .|. ...||+|.+ .|++.|.|+|..++.|. |.+||+|++.||+.||..|....
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGS-GVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEE-ESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEee-cCCHHHHHHHHHHHHHHHHHhcC
Confidence 4699999999999999975 999 778999999 79999999999998888 59999999999999999998653
No 50
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.48 E-value=4.4e-14 Score=115.74 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEE-----cceeeeccccccCCChhHHHHHHHHHHHhcccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTI-----DGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I-----~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
+|||+.||||||++++ .|.|.+...||+|.+.|++.|.| ++..+..+. |.+||.|++.||+.||..|....
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~-G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH-GSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECC-CSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999 89999878899999999999999 577888887 59999999999999999998654
No 51
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.45 E-value=1.5e-13 Score=109.73 Aligned_cols=70 Identities=33% Similarity=0.346 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||++++.+|.|.+. ..||+ +.|++.|.|+|..++.|. |.+||.|++.||+.||..|...
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999984 57887 889999999999888888 5999999999999999999854
No 52
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.44 E-value=1.5e-15 Score=145.85 Aligned_cols=140 Identities=16% Similarity=0.011 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCCh---hHHHHHHHHHHHhccccC---C---
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKE---AEHEAAKVALMSLSLDKF---Q--- 77 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~---Akq~AA~~aL~~L~~~~~---~--- 77 (314)
..|.+++.+.|+. .|.....|+.....-..+-++.++.|++.+||.+.+. +...|.+++...+.+... .
T Consensus 171 ~~La~iA~~lgL~--~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~~ 248 (341)
T 3rv0_A 171 NNLFDWSTKLNFT--KRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVI 248 (341)
T ss_dssp HHHHHHHHHTTTT--TTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC--
T ss_pred HHHHHHHHHcCcH--HHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999999975 4444222222110000122456789999999999998 777666666554443211 0
Q ss_pred -CCcccchHHHHHHHHHHhcCCC-CcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 78 -QDDSVLYKNVLQELAQKEAYAL-PVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 78 -~d~~~n~ks~LqE~~qk~~~~~-P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
.....|||+.||||||++++.. |.|++ .+.|| |++.|.|+|+.++.|.|.|||+|||.||+.||+.|....
T Consensus 249 ~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~ 322 (341)
T 3rv0_A 249 KEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLR 322 (341)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhh
Confidence 1245799999999999998765 59997 45665 999999999999999999999999999999999997653
No 53
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.43 E-value=1.8e-13 Score=109.16 Aligned_cols=68 Identities=29% Similarity=0.365 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++ ..|.|.+. ..||.|.+.|++.|.|+|..+ .|. |.+||.|++.||+.||..|..
T Consensus 15 ~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS-GPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp SSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHhCC
Confidence 369999999999996 46999985 689999999999999999988 677 599999999999999999964
No 54
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.43 E-value=3.1e-13 Score=113.01 Aligned_cols=70 Identities=31% Similarity=0.344 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++++.+|.|.+... +|.+.|++.|.|+|..|+.|.|..+||+|+|.||+.||..|..
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999765 8999999999999999988873399999999999999999974
No 55
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.42 E-value=6.6e-14 Score=111.10 Aligned_cols=68 Identities=16% Similarity=-0.002 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcce-eeeccccccCCChhHHHHHHHHHHHhc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~-~feag~Ga~SKK~Akq~AA~~aL~~L~ 72 (314)
+|||+.||||+|+.+ ..|.|.+...||+|++.|++.|.|+|. .++.|. |.|||+|+|.||+.+|..|.
T Consensus 6 ~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 6 MNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred CCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence 589999999999975 579999976799999999999999998 888888 59999999999999998764
No 56
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.39 E-value=2.5e-13 Score=111.57 Aligned_cols=69 Identities=16% Similarity=0.003 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcce-eeeccccccCCChhHHHHHHHHHHHhc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS 72 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~-~feag~Ga~SKK~Akq~AA~~aL~~L~ 72 (314)
.+|||+.||||||+.+ ..|.|.+...||+|.+.|++.|.|+|. .++.|. |.|||+|+|.||+.||..+.
T Consensus 7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999955 679999966699999999999999998 888888 59999999999999987654
No 57
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=105.54 Aligned_cols=68 Identities=29% Similarity=0.302 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.++|+.||||||+++ .|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||+|++.||+.+|..|...
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHhhc
Confidence 478999999999998 689998 4689999999999999999887 666 6999999999999999999864
No 58
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.36 E-value=6.9e-13 Score=108.79 Aligned_cols=67 Identities=33% Similarity=0.327 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK 75 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~ 75 (314)
.+|||+.||||||+ |.|.+ .+.||.|.+.|+++|.|+|..| .|. |.|||+|+|.||+.||+.|....
T Consensus 36 ~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 36 PKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQ-GRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999984 89998 5689999999999999999998 777 59999999999999999998643
No 59
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.34 E-value=2e-12 Score=97.04 Aligned_cols=65 Identities=26% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
++|||+.||||| ..|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||.|++.||+.+|..|..
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~-G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGS-GRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHHHh
Confidence 689999999994 4689998 5689999999999999999877 576 699999999999999998864
No 60
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.26 E-value=1.1e-11 Score=113.36 Aligned_cols=69 Identities=38% Similarity=0.455 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-eecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 82 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
.|||+.|++|++. +..|.|++ .+.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||+.|....
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 5889999999975 56789997 5789999999999999999886 79999999999999999999998653
No 61
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=93.55 Aligned_cols=66 Identities=27% Similarity=0.221 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
++||++.|+|+ . ..|.|.+. ..||+|++.|++.|.|+|..+ .|. |.|||.|++.||+.+|..|...
T Consensus 6 ~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEE-ECCHHHHHHHHHHHHHHHHHcc
Confidence 35666666665 3 35899984 689999999999999999988 677 5999999999999999999764
No 62
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.20 E-value=1.4e-11 Score=110.92 Aligned_cols=70 Identities=31% Similarity=0.324 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||++++..|.|.+ ...||+|.+.|++.|.|+|. ++.|. |.|||.|++.||+.||+.|..
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~-G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGE-GKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEe-cCCHHHHHHHHHHHHHHHhhc
Confidence 369999999999999998899998 46799999999999999999 88887 699999999999999999863
No 63
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.20 E-value=2e-11 Score=112.33 Aligned_cols=71 Identities=31% Similarity=0.302 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHcCCCCCceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||+.++..|.|.+. ..||+|.+.|++.|.|+|..++.|. |.+||+|++.||+.||+.|..
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 3699999999999999988999984 6899999999999999999888887 599999999999999999875
No 64
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.08 E-value=9.6e-12 Score=114.79 Aligned_cols=108 Identities=18% Similarity=0.045 Sum_probs=74.5
Q ss_pred EEEcceeeeccccccCCChhH--HHHHHHHHHHhccccCCCCcccchHHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEE
Q 021322 40 VTIDGQTYESHQFFPTLKEAE--HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 117 (314)
Q Consensus 40 V~I~g~~feag~Ga~SKK~Ak--q~AA~~aL~~L~~~~~~~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~ 117 (314)
.++.++.||+.+||++.+.+. ..+.+++...|.+.... ....+||+.|+||+|.... .+.| ...++.|.+.|++
T Consensus 154 ~~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~-~~~~~~k~~l~el~~~~~~-~~~~--~~~~~~~~~~f~v 229 (265)
T 3c4b_A 154 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK-FSANVPRSPVRELLEMEPE-TAKF--SPAERTYDGKVRV 229 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHCTT-TEEE--CCCEECTTSCEEE
T ss_pred chHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHh-HhhcCCCCHHHHHHHhccC-Ccee--eeccccCCCcEEE
Confidence 356788999999999999887 44444444444332110 0113444555555554332 1222 2344568999999
Q ss_pred EEEECCEEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 118 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 118 ~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
.|.|+|+.++.|.|.|||+|||.||+.||+.|..
T Consensus 230 ~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 230 TVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999863
No 65
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.07 E-value=1.4e-11 Score=113.39 Aligned_cols=71 Identities=34% Similarity=0.411 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHcCCCCCceee-eecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~-~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
.+|||+.||||||+.++..|.|.+ ...||.|.+.|++.|.|+|..++.|. |.|||+|++.||+.||+.|..
T Consensus 176 ~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 176 IKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI-AGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHHc
Confidence 369999999999999999999998 47899999999999999998888887 599999999999999998864
No 66
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.07 E-value=1.4e-11 Score=112.42 Aligned_cols=72 Identities=31% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 2 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 2 ~knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.+|||+.||||||++++..|.|.+...||.|.+.|++.|.++|..++.|. |.+||.|++.||+.||+.|...
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~-G~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGV-GRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHhhc
Confidence 36999999999999999889999966899999999999999998888887 6999999999999999998754
No 67
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.45 E-value=2.1e-08 Score=96.29 Aligned_cols=65 Identities=28% Similarity=0.275 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHcCCCC-Cceeee-ecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 3 HLYKNQLQSYTQKKNLPL-PMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~-P~Y~~~-~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
+|||+.||||||+.++.. |.|.+. ..|| |++.|.|+|..++.|. |.+||+|+|.||+.||+.|..
T Consensus 254 ~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~-G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 254 KNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAE-GNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHHHHhhh
Confidence 699999999999998654 589884 4554 9999999999888888 589999999999999998875
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=97.90 E-value=7e-06 Score=75.38 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhcc
Q 021322 3 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL 73 (314)
Q Consensus 3 knpkS~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~ 73 (314)
++|+..|+++|++. +.|.. .++.|.+.|++.|.|+|+.++.|. |.|||.|++.||+.||+.|..
T Consensus 200 k~~l~el~~~~~~~----~~~~~--~~~~~~~~f~v~v~v~~~~~~~G~-G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 200 RSPVRELLEMEPET----AKFSP--AERTYDGKVRVTVEVVGKGKFKGV-GRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCHHHHHHHHCTTT----EEECC--CEECTTSCEEEEEEETTTEEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccCC----ceeee--ccccCCCcEEEEEEEecceEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 45555555555432 23332 344688899999999998888888 599999999999999999864
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=96.17 E-value=0.0074 Score=47.96 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHhc-----CCCCcEEEeecCCCCCCeEEEEEEECC-----EEeeecccCCHHHHHHHHHHHHHHHhcC
Q 021322 82 VLYKNVLQELAQKEA-----YALPVYNTKQSGESHAPTFVSTVEVGG-----EVFSGQGAKSKKQAEMSAAKVAYMRLKE 151 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~-----~~~P~Y~~~~~Gp~h~~~F~~~V~v~g-----~~~~~g~G~SKK~Akq~AA~~AL~~L~~ 151 (314)
.+.++.|+.||++.- ...|.|.+..... ....| |+|.+-. ...+.- -.|||.||+.||-.|+..|..
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHH
Confidence 477899999999753 2468999642211 12467 8888853 222333 499999999999999999987
Q ss_pred CCC
Q 021322 152 PNP 154 (314)
Q Consensus 152 ~~~ 154 (314)
.+.
T Consensus 81 ~G~ 83 (102)
T 2kou_A 81 LGV 83 (102)
T ss_dssp HCS
T ss_pred CCC
Confidence 765
No 70
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=95.94 E-value=0.0009 Score=70.25 Aligned_cols=109 Identities=11% Similarity=-0.056 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCCCCceeeeecCCCCCcceEEEEEEcceeeeccccccCCC-hhHHHHHHHHHHHhccccC---CCCccc
Q 021322 7 NQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLK-EAEHEAAKVALMSLSLDKF---QQDDSV 82 (314)
Q Consensus 7 S~LqE~cQK~gl~~P~Y~~~~~Gp~h~~~F~~~V~I~g~~feag~Ga~SKK-~Akq~AA~~aL~~L~~~~~---~~d~~~ 82 (314)
..|.+++.+.|+ +.|.....|+. .+-++.++.||+.+||.+.+ .+.+.|.+++.+.+..... ......
T Consensus 376 ~~La~~A~~lgL--~~~l~~~~~e~------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~ 447 (756)
T 2qvw_A 376 EALNYLVQTLGL--PQLAEFSNNLV------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACP 447 (756)
T ss_dssp HHHHHHHHHTTC--TTTCBCCSCC--------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCC
T ss_pred hHHHHHHHHcCh--HHHhccCCCCC------CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhccccccccc
Confidence 468999999997 46666555543 22367788999999999999 8877655555555554422 123467
Q ss_pred ch-HHHHHHHHHHhcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHH---------HHHHHHHHHHhcCC
Q 021322 83 LY-KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE---------MSAAKVAYMRLKEP 152 (314)
Q Consensus 83 n~-ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Ak---------q~AA~~AL~~L~~~ 152 (314)
|| |+.||||||++ .++.|.+.+.+.|| -.||+.||+.|...
T Consensus 448 Dp~Kt~LqE~~q~~-----------------------------~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~ 498 (756)
T 2qvw_A 448 DAVTKASKRVCMGE-----------------------------AGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDI 498 (756)
T ss_dssp HHHHHHHHHHHTSC-----------------------------CCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHhcc-----------------------------chhhhhhhhhhHHhhhccccchhhHHHHHHHHhhccc
Confidence 89 99999999833 33456667777777 57999999888765
No 71
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=90.99 E-value=0.25 Score=52.64 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=49.4
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEee------cC------CCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 021322 82 VLYKNVLQELAQKEAYALPVYNTKQ------SG------ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR 148 (314)
Q Consensus 82 ~n~ks~LqE~~qk~~~~~P~Y~~~~------~G------p~h~~-~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~ 148 (314)
..||..+++ |-+- .+.|++++ .| |+..| .|.|.+.+-+..+-.+.-+-||+|||.||+.||++
T Consensus 17 ~~pk~~~~q---~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~ 92 (950)
T 3htx_A 17 PTPKAIIHQ---KFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK 92 (950)
T ss_dssp CCCHHHHHH---TTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH---HhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence 357766553 3332 25787632 11 12333 89999988776655688899999999999999999
Q ss_pred hcCCCCCCC
Q 021322 149 LKEPNPSQG 157 (314)
Q Consensus 149 L~~~~~~~~ 157 (314)
|+.+.....
T Consensus 93 ~g~~~~~~~ 101 (950)
T 3htx_A 93 LGIRPQNDD 101 (950)
T ss_dssp TTSTTTSCC
T ss_pred hCCCccccC
Confidence 998654433
No 72
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=86.82 E-value=0.61 Score=36.75 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHcCC-----CCCceeeeecCCCCCcceEEEEEEcc----eeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 4 LYKNQLQSYTQKKNL-----PLPMYSCEREGPPHASRFKCKVTIDG----QTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 4 npkS~LqE~cQK~gl-----~~P~Y~~~~~Gp~h~~~F~~~V~I~g----~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
+.++.|+.||++..- ..|.|.+..... ....| |+|.+-. ..+.+.. ..+|+.||+.||-.|...|.+.
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHHC
Confidence 568999999998642 247888532111 12346 8877643 1222222 4899999999999999999987
Q ss_pred cCC
Q 021322 75 KFQ 77 (314)
Q Consensus 75 ~~~ 77 (314)
+.+
T Consensus 82 G~L 84 (102)
T 2kou_A 82 GVL 84 (102)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 73
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.64 E-value=2 Score=34.63 Aligned_cols=71 Identities=18% Similarity=0.020 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHHHhcCC--CCcEEE--eecCCCCCCeEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHhcCCC
Q 021322 80 DSVLYKNVLQELAQKEAYA--LPVYNT--KQSGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 153 (314)
Q Consensus 80 ~~~n~ks~LqE~~qk~~~~--~P~Y~~--~~~Gp~h~~~F~~~V~v~--g~~~~~g~G~SKK~Akq~AA~~AL~~L~~~~ 153 (314)
+...||+.|....|+--.. .-.|.+ ...|. ++=.|++.+. ...-..+.|+.|-+||++||..|++.|+.-+
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence 4458999999877753211 012322 23332 3335666553 2222357899999999999999999997654
No 74
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=66.19 E-value=5.4 Score=42.66 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=32.6
Q ss_pred ceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccc
Q 021322 35 RFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD 74 (314)
Q Consensus 35 ~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~ 74 (314)
.|+|.+.+-+..+-++. ..-||+|+|.||+.||++|.-+
T Consensus 58 ~~~c~~~lp~~~~~~~~-~~~kkd~eq~aa~~al~~~g~~ 96 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSNV-FKKKKDSEQSAAELALDKLGIR 96 (950)
T ss_dssp EEEEEEECSSCEEECCC-BSCHHHHHHHHHHHHHTTTTST
T ss_pred eEEEEeeCCCceEecch-hhccccHHHHHHHHHHHHhCCC
Confidence 68888888776666665 6889999999999999999754
No 75
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=40.57 E-value=1e+02 Score=26.42 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=60.1
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCC----CC-c--------ccchHHHHHHHHHHhc----
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ----QD-D--------SVLYKNVLQELAQKEA---- 96 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~----~d-~--------~~n~ks~LqE~~qk~~---- 96 (314)
|.-++.+.-.|..... ||.|.++|+. |++.+.+.|...++. .+ . .....=.|.+++....
T Consensus 57 Pk~t~lIF~SGKiv~T--GAkS~e~a~~-a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eY 133 (188)
T 2z8u_A 57 PKVALLIFRSGKVNCT--GAKSKEEAEI-AIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGTEY 133 (188)
T ss_dssp TTEEEEECTTSEEEEE--EESSHHHHHH-HHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEE
T ss_pred CcEEEEEeCCCeEEEe--cCCCHHHHHH-HHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhCcCcEE
Confidence 4455556667877665 4788888866 666665666544321 11 0 1111123666665521
Q ss_pred ----CCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 97 ----YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 97 ----~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
++.-.|++. .|+-++.+...|+.+-+| ++|..++++ |.+..+..|.
T Consensus 134 ePe~fPgliyR~~------~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~~L~ 183 (188)
T 2z8u_A 134 EPEQFPGLVYRLD------DPKVVVLIFGSGKVVITG-LKSEEDAKR-ALKKILDTIK 183 (188)
T ss_dssp CTTTSSSEEEEEE------TTEEEEEECTTSEEEEES-CSCHHHHHH-HHHHHHHHHH
T ss_pred CCccCceEEEEeC------CCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHH
Confidence 122233333 245555666689988777 689898888 5555555553
No 76
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=38.46 E-value=90 Score=26.64 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=60.8
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCC----CC-c--------ccchHHHHHHHHHHhc----
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ----QD-D--------SVLYKNVLQELAQKEA---- 96 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~----~d-~--------~~n~ks~LqE~~qk~~---- 96 (314)
|.-++.+.-.|...-. ||.+.++++. |++.+.+.|...++. .+ . .....=.|.+++....
T Consensus 53 P~~t~lIF~SGKiv~T--GakS~~~~~~-a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~Y 129 (182)
T 1ais_A 53 PKVALLIFSSGKLVVT--GAKSVQDIER-AVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEY 129 (182)
T ss_dssp SCCEEEECTTSEEEEE--EESSHHHHHH-HHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEEC
T ss_pred CcEEEEEeCCCeEEEe--cCCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhCCCCEE
Confidence 4455556667877655 4688888866 666666666554421 01 0 1112224666665421
Q ss_pred ----CCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 97 ----YALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 97 ----~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
++.-.|++. .|.-++.+...|+.+-+| ++|..++++ |++..+..|.
T Consensus 130 ePe~fpgli~R~~------~pk~~~lIF~SGKiviTG-aks~~~~~~-a~~~i~~~L~ 179 (182)
T 1ais_A 130 EPEQFPGVIYRVK------EPKSVILLFSSGKIVCSG-AKSEADAWE-AVRKLLRELD 179 (182)
T ss_dssp CTTTCSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHT
T ss_pred CCccCceEEEEeC------CCcEEEEEecCCEEEEEe-cCCHHHHHH-HHHHHHHHHH
Confidence 112233332 245566666689988777 689998888 6666666664
No 77
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=31.83 E-value=1.3e+02 Score=26.09 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCcceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCCCcccchHH-------------HHHHHHHH----
Q 021322 32 HASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKN-------------VLQELAQK---- 94 (314)
Q Consensus 32 h~~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~d~~~n~ks-------------~LqE~~qk---- 94 (314)
..++-++.+.-.|..... ||.+.++|+. |++.+.+.|...++......+++= .|.+++..
T Consensus 55 ~~Pk~t~lIF~SGKiv~T--GakS~e~a~~-a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~ 131 (198)
T 1mp9_A 55 ESPKITSLIFKSGKMVVT--GAKSTDELIK-AVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENN 131 (198)
T ss_dssp TTTTEEEEECTTSEEEEE--CCSSHHHHHH-HHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHSSSE
T ss_pred CCCceEEEEeCCCeEEEe--ccCCHHHHHH-HHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhcCCc
Q ss_pred ----hcCCCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 95 ----EAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 95 ----~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
+.++...|++. .|+-++.+...|+.+-+| ++|..++++ |.+..+..|.
T Consensus 132 ~YePe~fPgliyR~~------~Pk~t~lIF~SGKiviTG-aks~~~~~~-A~~~i~~~L~ 183 (198)
T 1mp9_A 132 MYEPEQFPGLIYRMD------EPRVVLLIFSSGKMVITG-AKREDEVHK-AVKKIFDKLV 183 (198)
T ss_dssp ECCTTTCSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHH
T ss_pred EECCccCCeEEEEeC------CCcEEEEEeCCCEEEEEe-cCCHHHHHH-HHHHHHHHHH
No 78
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=22.72 E-value=2.2e+02 Score=25.13 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=60.8
Q ss_pred cceEEEEEEcceeeeccccccCCChhHHHHHHHHHHHhccccCCC---C---------cccchHHHHHHHHHHhcC----
Q 021322 34 SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ---D---------DSVLYKNVLQELAQKEAY---- 97 (314)
Q Consensus 34 ~~F~~~V~I~g~~feag~Ga~SKK~Akq~AA~~aL~~L~~~~~~~---d---------~~~n~ks~LqE~~qk~~~---- 97 (314)
++-++.+.-.|...-. ||.+.++|+. |++.+.+.|...++.. + -.....=.|.+++...+.
T Consensus 87 Pk~t~LIF~SGKiV~T--GAkS~e~a~~-A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~Y 163 (218)
T 3eik_A 87 PKTTALIFASGKMVIT--GAKSEKSSRM-AAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSY 163 (218)
T ss_dssp TTEEEEECTTSEEEEE--EESSHHHHHH-HHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEEC
T ss_pred CcEEEEEECCCeEEEE--ecCCHHHHHH-HHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEE
Confidence 3455555667877655 5788888866 6666667776544311 0 012233357777765431
Q ss_pred -----CCCcEEEeecCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhc
Q 021322 98 -----ALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 150 (314)
Q Consensus 98 -----~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~g~G~SKK~Akq~AA~~AL~~L~ 150 (314)
+...|++. .++-++.+...|+.+-+| +++..++++ |-+..+..|.
T Consensus 164 EPE~fPGliyR~~------~pkvt~lIF~SGKiviTG-aks~~d~~~-A~~~I~p~L~ 213 (218)
T 3eik_A 164 EPELFPGLIYRMV------KPKIVLLIFVSGKIVLTG-AKVRDDIYQ-AFNNIYPVLI 213 (218)
T ss_dssp CTTTSSSEEEEET------TTTEEEEECTTSEEEEEE-ESSHHHHHH-HHHHHHHHHH
T ss_pred CCccCceEEEEcC------CCCEEEEEeCCCeEEEEe-cCCHHHHHH-HHHHHHHHHH
Confidence 22234432 244556666689887777 588888877 5555555543
No 79
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=20.33 E-value=49 Score=30.82 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.6
Q ss_pred Cceeee-cCCcEEEEec
Q 021322 294 GSSVLH-RDNQWVAWTD 309 (314)
Q Consensus 294 ~~~~~~-~~~~~~~~~~ 309 (314)
+-||.| .|+.||||..
T Consensus 256 ~PTVspL~~~~wvAV~~ 272 (304)
T 1nh8_A 256 SPTIAPLADPDWVAIRA 272 (304)
T ss_dssp SCEEEECSSTTEEEEEE
T ss_pred CCeeeecCCCCeEEEEE
Confidence 669999 8888999964
Done!