BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021323
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana
GN=GXM2 PE=1 SV=1
Length = 290
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 143/278 (51%), Gaps = 18/278 (6%)
Query: 47 LVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQ--NICSSTSPSCSNTPSYSPGTSTNL 104
L+FI S+ +L +L L + S ++T+ + C ST C+ P+ +
Sbjct: 13 LIFICCSILVLFILFLKRASFSSNSTATIRDEYHQKSKCPSTPQQCTKLPTSLSDALVHY 72
Query: 105 PNASALTKKEFKFLS---NLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKI 161
+ ++ F +S ++ K+PCN L+FGL L + N G T+FLE+D I
Sbjct: 73 VTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWI 132
Query: 162 NAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACA---PRSELLPSSKCKLTRKDLP 218
V +K + Y V Y KD+ KL++ R A PR SKC L+ K P
Sbjct: 133 ETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTEDCKAVSDPRD-----SKCALSLKGFP 187
Query: 219 QEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKW 275
+V++ +WDVI+VD P G EAPGRMS IYTA +LARN G T+V VHD++R +E
Sbjct: 188 ADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDE 247
Query: 276 FSWEFLCEENLVSSKGKLWNFRLTDQ--SNSTRFCPAE 311
FS FLC + +G+L +F + S T FCPA+
Sbjct: 248 FSVAFLCGGYMKEQQGRLRHFNIPSHRASFGTPFCPAD 285
>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2
SV=1
Length = 322
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 31/289 (10%)
Query: 45 ILLVFIITSLSILRLLKLAIT--TSPSPPSSTLLSTLQNICSSTSPSCSNTPSYSPGTST 102
+ L+ ++ +I+ LL L T T PS +S + + ++PS S SP +++
Sbjct: 28 LWLLAFVSFFTIVFLLTLLYTRDTIPSKNTSVAAAVAAVVTGGSTPSAS-----SPISNS 82
Query: 103 NLPNAS---------------ALTKKEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKAN 146
NLP ++ ++ E K +S+++ AP CNLL+FGL + L N
Sbjct: 83 NLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLN 142
Query: 147 AEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPA--CAPRSEL 204
G TVF+E++ + ++ V Y A +A +L+ A++ C P L
Sbjct: 143 HNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNL 202
Query: 205 LPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN--GET-- 260
L S CKL DLP V+ WDVI VDGPRGD E PGRMS+I+TA++LAR+ G T
Sbjct: 203 L-FSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPK 261
Query: 261 TNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQS-NSTRFC 308
T+V VHD R +E+ EFLC ENLV S L ++ L NST+FC
Sbjct: 262 THVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKMDKNSTKFC 310
>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana
GN=GXM1 PE=1 SV=1
Length = 282
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 19/212 (8%)
Query: 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170
T KE S ++ K+PCN L+FGL L S N G TVFLE+D I +KR+
Sbjct: 77 TLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPM 136
Query: 171 TQIYKVDYQRPAKDAYKLLKHARQNPACA----PRSELLPSSKCKLTRKDLPQEVFKHKW 226
+ Y V Y A L++ + P C PR S C+L K LP E+++ W
Sbjct: 137 LESYHVTYDSKVNQADNLIEVGK-GPECTAIGDPRY-----SMCQLALKGLPAEIYETGW 190
Query: 227 DVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNVVVHDVDRTIEKWFSWEFLCE 283
D+I+VD P G EAPGRM+ IYTA M+ARN G T+V VHDV+R IE FS FLCE
Sbjct: 191 DLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCE 250
Query: 284 ENLVSSKGKLWNF-----RLTDQSNSTR-FCP 309
+ +G+L +F R +S S R FCP
Sbjct: 251 GYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282
>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana
GN=GXM3 PE=1 SV=1
Length = 297
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 8/196 (4%)
Query: 121 LITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQR 180
++ K+PCN L+FGL L + N G T+F+E+D I V +K + Y V Y
Sbjct: 100 VLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDT 159
Query: 181 PAKDAYKLLKHARQNPACAPRSELLP-SSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML 239
KD+ KL++ R RS P +SKC L KD P + ++ KWD+I+VD P G
Sbjct: 160 KVKDSDKLMELGRSEEC---RSVSDPRNSKCDLALKDFPADFYETKWDLIMVDAPTGYHE 216
Query: 240 EAPGRMSTIYTASMLARNGE--TTNVVVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFR 297
EAPGRMS IYTA +LARN E T+V VHDV+R +E FS FLC+ + G+L +F
Sbjct: 217 EAPGRMSAIYTAGLLARNREDGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFT 276
Query: 298 L-TDQSNSTR-FCPAE 311
+ + ++ + R FCP E
Sbjct: 277 IPSHRARAGRPFCPVE 292
>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
Length = 317
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 148/278 (53%), Gaps = 18/278 (6%)
Query: 46 LLVFIITSLSILRLLKLAITTSPSPPSSTLLSTLQNICSS--TSPSCSNTPSYSPGTSTN 103
LL F+ + +I LL L TT S +T+ + +S T+ + S P+ + +
Sbjct: 29 LLAFV-SFFTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTTATISQLPTTAINAMLH 87
Query: 104 LPNAS----ALTKKEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDS 158
+ S ++ E K +S+++ +P CNLL+FGL + L N G TVF+E++
Sbjct: 88 YASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENR 147
Query: 159 NKINAVKRKSNRTQIYKVDYQRPAKDAYKLL---KHARQNPACAPRSELLPSSKCKLTRK 215
+ +++ V Y A++A +L+ K A +N C P LL S CKL
Sbjct: 148 YYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNE-CRPVQNLL-FSDCKLGLN 205
Query: 216 DLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGET----TNVVVHDVDRT 271
DLP V+ WDVI+VDGPRGD + PGRMS+I+TA++LAR+ + T+V VHD R
Sbjct: 206 DLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRD 265
Query: 272 IEKWFSWEFLCEENLVSSKGKLWNFRLTDQS-NSTRFC 308
+E+ EFLC ENLV S L ++ L NST+FC
Sbjct: 266 VERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQFC 303
>sp|P59808|SASH1_MOUSE SAM and SH3 domain-containing protein 1 OS=Mus musculus GN=Sash1 PE=1
SV=1
Length = 1230
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 87 SPSCSNTPSYSPGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKAN 146
SP+C+ P + LP +++L + K L +++ K C + G+D + L +K
Sbjct: 1034 SPACTRPPPWL----AELPESTSLQEHGVK-LGPVLSRKVSC---VRGVDLEMLTENKLQ 1085
Query: 147 AEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHAR 193
AEGI + E S+K Q Y D ++P +D + R
Sbjct: 1086 AEGIDLTEEPYSDKHGRCGIPEALVQRYAEDLEQPERDVATNMDQIR 1132
>sp|Q0STY9|GCH1_CLOPS GTP cyclohydrolase 1 OS=Clostridium perfringens (strain SM101 /
Type A) GN=folE PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 212 LTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTA-----SMLARNGETTNVVVH 266
+ KD +E K + I D R ++E P R++ +Y M A+ + VH
Sbjct: 1 MIDKDKIREGMKLILEAIGEDANREGLIETPDRIARMYEEIFSGIGMNAKEHLSKTFEVH 60
Query: 267 DVDRTIEKWFSWEFLCEENLVSSKGKL 293
D +EK ++ +CE +LV GK+
Sbjct: 61 SNDLVLEKDITFYSMCEHHLVPFYGKV 87
>sp|Q0TRM0|GCH1_CLOP1 GTP cyclohydrolase 1 OS=Clostridium perfringens (strain ATCC 13124
/ NCTC 8237 / Type A) GN=folE PE=3 SV=1
Length = 185
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 212 LTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTA-----SMLARNGETTNVVVH 266
+ KD +E K + I D R ++E P R++ +Y M A+ + VH
Sbjct: 1 MIDKDKIREGMKLILEAIGEDINREGLIETPDRIARMYEEIFSGIGMNAKEHLSKTFEVH 60
Query: 267 DVDRTIEKWFSWEFLCEENLVSSKGKL 293
D +EK ++ +CE +LV GK+
Sbjct: 61 SNDLVLEKDITFYSMCEHHLVPFYGKV 87
>sp|A4GSN8|NUA_ARATH Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1
Length = 2093
Score = 31.6 bits (70), Expect = 8.6, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 63 AITTSPSPPSSTLLSTLQN-ICSSTSPSCSN---TPSYSPGTSTNLPNASALTKKEFKFL 118
A TTSP + T STL + I SS +P + PS G+ST + A K + +
Sbjct: 1986 AATTSPVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGGGSSTIVTLADRAQMKRRERI 2045
Query: 119 SNLITSKAP 127
+N++ S+AP
Sbjct: 2046 ANIVVSRAP 2054
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,244,220
Number of Sequences: 539616
Number of extensions: 4688600
Number of successful extensions: 16546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 16170
Number of HSP's gapped (non-prelim): 374
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)