Query 021323
Match_columns 314
No_of_seqs 92 out of 94
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 1E-110 3E-115 758.8 19.0 202 107-308 20-225 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 9.4E-85 2E-89 579.9 -12.8 182 113-296 1-190 (190)
3 COG0421 SpeE Spermidine syntha 93.7 0.35 7.5E-06 46.2 8.5 154 113-301 63-236 (282)
4 PLN02823 spermine synthase 93.5 0.41 8.8E-06 46.6 8.8 103 120-255 97-203 (336)
5 TIGR00417 speE spermidine synt 92.4 0.94 2E-05 41.7 9.1 52 120-171 66-119 (270)
6 PRK01581 speE spermidine synth 92.4 1 2.2E-05 45.2 9.8 146 121-301 145-313 (374)
7 PRK00811 spermidine synthase; 90.2 1 2.3E-05 42.0 7.1 52 120-171 70-123 (283)
8 PF01564 Spermine_synth: Sperm 87.8 1.2 2.5E-05 41.2 5.6 156 113-302 63-238 (246)
9 PRK04457 spermidine synthase; 86.9 8.4 0.00018 35.8 10.7 46 124-169 64-111 (262)
10 PLN02781 Probable caffeoyl-CoA 84.3 4.1 8.9E-05 37.1 7.2 98 111-236 53-155 (234)
11 PF01596 Methyltransf_3: O-met 82.8 5.6 0.00012 36.1 7.4 101 111-239 30-135 (205)
12 PRK03612 spermidine synthase; 82.2 7.7 0.00017 39.6 8.9 44 123-166 294-339 (521)
13 PLN02476 O-methyltransferase 82.2 9 0.00019 36.8 8.8 101 109-237 101-206 (278)
14 PLN02366 spermidine synthase 79.7 7.6 0.00016 37.4 7.5 147 122-302 87-254 (308)
15 PRK00377 cbiT cobalt-precorrin 74.8 9.9 0.00022 33.1 6.3 61 107-167 20-84 (198)
16 cd02042 ParA ParA and ParB of 71.3 5 0.00011 30.7 3.3 14 226-239 40-53 (104)
17 COG5125 Uncharacterized conser 69.7 6.7 0.00014 37.5 4.3 94 98-193 150-252 (259)
18 COG0003 ArsA Predicted ATPase 68.0 1.6 3.5E-05 42.5 -0.1 26 212-237 112-138 (322)
19 PF09954 DUF2188: Uncharacteri 66.3 4.4 9.5E-05 29.9 1.9 51 225-276 10-60 (62)
20 PF10718 Ycf34: Hypothetical c 57.1 3.3 7.1E-05 33.6 -0.2 30 211-244 42-71 (77)
21 PLN02589 caffeoyl-CoA O-methyl 57.0 44 0.00095 31.4 7.2 102 111-239 64-170 (247)
22 cd05013 SIS_RpiR RpiR-like pro 55.9 84 0.0018 24.3 7.6 80 114-195 2-86 (139)
23 COG5157 CDC73 RNA polymerase I 51.8 10 0.00022 37.8 2.1 28 226-253 261-288 (362)
24 TIGR00345 arsA arsenite-activa 51.5 7.1 0.00015 36.5 1.1 26 224-249 111-140 (284)
25 PF09863 DUF2090: Uncharacteri 48.3 16 0.00035 36.2 2.9 55 108-162 216-284 (311)
26 TIGR03018 pepcterm_TyrKin exop 45.5 18 0.00039 31.7 2.6 53 108-160 8-77 (207)
27 COG3703 ChaC Uncharacterized p 45.4 14 0.0003 34.4 1.9 119 125-257 7-144 (190)
28 cd02035 ArsA ArsA ATPase funct 44.2 8.5 0.00018 34.1 0.3 23 214-236 102-124 (217)
29 PF13191 AAA_16: AAA ATPase do 42.6 17 0.00037 29.7 1.9 54 112-181 6-63 (185)
30 PRK08618 ornithine cyclodeamin 40.6 1.1E+02 0.0023 29.3 7.1 118 107-234 107-246 (325)
31 COG0445 GidA Flavin-dependent 40.1 29 0.00062 37.3 3.5 38 224-271 3-40 (621)
32 PF13659 Methyltransf_26: Meth 40.0 36 0.00079 26.1 3.2 90 129-249 3-94 (117)
33 cd03111 CpaE_like This protein 39.8 27 0.00059 27.7 2.6 22 227-257 44-65 (106)
34 cd00550 ArsA_ATPase Oxyanion-t 39.7 11 0.00023 34.6 0.3 20 140-159 20-39 (254)
35 PF02254 TrkA_N: TrkA-N domain 39.1 40 0.00086 26.2 3.4 104 130-278 1-107 (116)
36 PRK07402 precorrin-6B methylas 37.8 1.1E+02 0.0025 26.3 6.3 60 109-168 22-84 (196)
37 cd01078 NAD_bind_H4MPT_DH NADP 36.0 2.9E+02 0.0062 23.8 8.6 124 112-239 9-156 (194)
38 cd03110 Fer4_NifH_child This p 34.6 25 0.00055 29.5 1.7 16 224-239 91-106 (179)
39 PF06564 YhjQ: YhjQ protein; 34.3 23 0.00049 33.6 1.5 17 223-239 115-131 (243)
40 cd02038 FleN-like FleN is a me 34.1 60 0.0013 26.8 3.8 14 226-239 45-58 (139)
41 TIGR03202 pucB xanthine dehydr 34.1 46 0.001 28.3 3.3 30 242-271 78-107 (190)
42 PF13479 AAA_24: AAA domain 33.6 60 0.0013 28.8 4.0 30 126-159 2-34 (213)
43 TIGR02469 CbiT precorrin-6Y C5 32.8 1.3E+02 0.0028 22.9 5.2 57 110-166 2-61 (124)
44 KOG3022 Predicted ATPase, nucl 32.6 30 0.00064 34.3 2.0 62 221-291 149-215 (300)
45 PF02374 ArsA_ATPase: Anion-tr 30.8 29 0.00063 33.1 1.7 49 141-189 22-82 (305)
46 cd01852 AIG1 AIG1 (avrRpt2-ind 30.1 81 0.0018 27.1 4.1 43 227-270 50-95 (196)
47 PHA02663 hypothetical protein; 30.0 32 0.00069 31.1 1.6 19 239-257 82-101 (172)
48 COG0489 Mrp ATPases involved i 29.6 22 0.00048 33.3 0.6 35 126-160 55-98 (265)
49 cd05014 SIS_Kpsf KpsF-like pro 29.4 1.7E+02 0.0036 23.1 5.5 68 129-196 2-74 (128)
50 TIGR01281 DPOR_bchL light-inde 29.3 24 0.00051 31.8 0.7 13 225-237 115-127 (268)
51 PF01380 SIS: SIS domain SIS d 28.5 1E+02 0.0022 24.1 4.1 67 129-195 7-79 (131)
52 cd02034 CooC The accessory pro 28.3 73 0.0016 26.2 3.4 32 207-238 64-99 (116)
53 COG1192 Soj ATPases involved i 28.2 34 0.00074 30.5 1.5 14 224-237 118-131 (259)
54 PHA02913 TGF-beta-like protein 27.6 32 0.00069 31.6 1.2 29 207-239 74-103 (172)
55 KOG4417 Predicted endonuclease 27.4 32 0.0007 33.2 1.3 24 215-238 105-133 (261)
56 PF13840 ACT_7: ACT domain ; P 27.1 19 0.00041 26.8 -0.3 33 223-258 3-35 (65)
57 PRK10892 D-arabinose 5-phospha 26.6 3.3E+02 0.0072 25.5 7.8 82 114-196 35-121 (326)
58 TIGR01969 minD_arch cell divis 26.6 39 0.00084 29.5 1.6 16 224-239 107-122 (251)
59 cd03287 ABC_MSH3_euk MutS3 hom 25.5 2.5E+02 0.0054 25.8 6.6 70 112-181 95-177 (222)
60 PF12847 Methyltransf_18: Meth 25.3 1.2E+02 0.0026 22.9 3.9 40 129-168 4-45 (112)
61 TIGR01968 minD_bact septum sit 25.3 43 0.00094 29.2 1.6 16 224-239 110-125 (261)
62 TIGR03587 Pse_Me-ase pseudamin 24.9 2.6E+02 0.0056 25.0 6.5 61 112-172 28-91 (204)
63 cd01399 GlcN6P_deaminase GlcN6 24.9 82 0.0018 27.7 3.3 29 111-139 100-128 (232)
64 TIGR03127 RuMP_HxlB 6-phospho 24.9 4.3E+02 0.0094 22.4 8.0 82 109-196 14-99 (179)
65 KOG1635 Peptide methionine sul 24.3 1.4E+02 0.0029 28.1 4.7 64 128-195 24-99 (191)
66 PRK09331 Sep-tRNA:Cys-tRNA syn 24.2 3.3E+02 0.0072 26.0 7.5 116 127-251 102-234 (387)
67 PF01656 CbiA: CobQ/CobB/MinD/ 24.2 44 0.00095 27.7 1.4 15 226-240 95-109 (195)
68 smart00204 TGFB Transforming g 24.1 38 0.00083 27.6 1.0 19 219-239 8-27 (102)
69 COG0373 HemA Glutamyl-tRNA red 24.0 3.7E+02 0.008 27.7 8.1 128 110-270 161-296 (414)
70 PHA02518 ParA-like protein; Pr 23.6 52 0.0011 27.9 1.8 14 224-237 75-88 (211)
71 PRK15482 transcriptional regul 23.5 4E+02 0.0086 24.5 7.6 86 109-196 119-209 (285)
72 PRK07340 ornithine cyclodeamin 23.0 3.3E+02 0.0072 25.9 7.1 31 109-139 107-137 (304)
73 COG1233 Phytoene dehydrogenase 22.3 80 0.0017 31.8 3.0 26 224-259 2-27 (487)
74 TIGR02201 heptsyl_trn_III lipo 22.1 1.7E+02 0.0038 27.2 5.0 85 109-193 161-262 (344)
75 PRK15128 23S rRNA m(5)C1962 me 22.0 2.9E+02 0.0062 27.7 6.8 81 126-235 220-303 (396)
76 cd02037 MRP-like MRP (Multiple 21.5 55 0.0012 27.4 1.5 15 224-238 66-80 (169)
77 PRK02289 4-oxalocrotonate taut 21.2 55 0.0012 23.8 1.3 44 228-271 3-49 (60)
78 TIGR02998 RraA_entero regulato 21.2 61 0.0013 29.0 1.8 46 225-273 57-104 (161)
79 TIGR00347 bioD dethiobiotin sy 20.8 67 0.0014 26.7 1.8 34 224-261 98-132 (166)
80 TIGR02964 xanthine_xdhC xanthi 20.4 1.2E+02 0.0026 28.3 3.7 37 125-161 98-136 (246)
81 TIGR03371 cellulose_yhjQ cellu 20.4 60 0.0013 28.4 1.5 14 226-239 115-128 (246)
82 PRK06067 flagellar accessory p 20.3 4.2E+02 0.009 23.5 6.8 71 215-286 110-183 (234)
83 TIGR02085 meth_trns_rumB 23S r 20.3 3.3E+02 0.0071 26.7 6.7 41 126-168 233-275 (374)
84 COG3722 MtlR Transcriptional r 20.3 25 0.00054 32.4 -0.9 30 131-160 75-115 (174)
85 TIGR01685 MDP-1 magnesium-depe 20.0 1.4E+02 0.003 26.6 3.8 44 149-194 131-174 (174)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=1.3e-110 Score=758.84 Aligned_cols=202 Identities=56% Similarity=1.007 Sum_probs=195.2
Q ss_pred CCcCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHH
Q 021323 107 ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAY 186 (314)
Q Consensus 107 ~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~ 186 (314)
++|||.+||+++++||++|||||||||||||||+||+||||||||||||||++||+++++++|+||+|+|+|+|+++||+
T Consensus 20 t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~~p~leay~V~Y~t~~~~a~ 99 (225)
T TIGR01627 20 PTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAY 99 (225)
T ss_pred CcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhcCCcceEEEEEeehhhhhHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc---CCCceE
Q 021323 187 KLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GETTNV 263 (314)
Q Consensus 187 ~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa---Gg~TdV 263 (314)
+||+++|++++|+|+|+++++|+|||||+|||+||||++|||||||||+||+|||||||+||||||||||+ |++|||
T Consensus 100 ~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAav~AR~r~~g~~TdV 179 (225)
T TIGR01627 100 NLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDV 179 (225)
T ss_pred HHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHHHHHHHHHhccCCCCceE
Confidence 99999999899999998767999999999999999999999999999999999999999999999999999 457999
Q ss_pred EEecCChhHHHHHhhhhccccccccccCceeceEecCCCC-CCCCC
Q 021323 264 VVHDVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQSN-STRFC 308 (314)
Q Consensus 264 fVHDVdR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~~~-~~~FC 308 (314)
|||||||+|||||||||||++|||+++||||||+||+|++ +++||
T Consensus 180 fVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~~~FC 225 (225)
T TIGR01627 180 FVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNASRAFC 225 (225)
T ss_pred EEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCCCCCC
Confidence 9999999999999999999999999999999999999955 56699
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=9.4e-85 Score=579.90 Aligned_cols=182 Identities=48% Similarity=0.870 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhccCC-ccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHH
Q 021323 113 KEFKFLSNLITSKAP-CNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKH 191 (314)
Q Consensus 113 ~Ei~~~~~VL~~raP-CNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ 191 (314)
.||+.+++||++++| |||||||||||+|||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||..
T Consensus 1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~ 80 (190)
T PF04669_consen 1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence 599999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc---CC--CceEEEe
Q 021323 192 ARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN---GE--TTNVVVH 266 (314)
Q Consensus 192 ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa---Gg--~TdVfVH 266 (314)
+|+ ++|+|+++. ++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+ |+ +||||||
T Consensus 81 ~~~-~~C~~~~~~-~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfVh 158 (190)
T PF04669_consen 81 ARS-PECRPVQNL-RFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFVH 158 (190)
T ss_dssp H-----------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE-
T ss_pred ccc-ccccccccc-cccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEEE
Confidence 998 999999886 9999999999999999999999999999999999999999999999999999 34 3699999
Q ss_pred cCChhHHHHHhhhhccccccccccCc--eece
Q 021323 267 DVDRTIEKWFSWEFLCEENLVSSKGK--LWNF 296 (314)
Q Consensus 267 DVdR~VEk~fs~EFLC~~nLv~~~Gr--LwHF 296 (314)
||||+|||+||+||||+||+++++|+ ||||
T Consensus 159 dv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 159 DVDRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred cccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 99999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=93.70 E-value=0.35 Score=46.20 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce--eEEEeeccchhhHHHH
Q 021323 113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ--IYKVDYQRPAKDAYKL 188 (314)
Q Consensus 113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le--ay~V~Y~T~~~ea~~L 188 (314)
-|.-+....+.+..|=+.||-|+|-...++..+-|. -+-+.+|=|+..|+-.++-+|... +++=+-.-.+.|+.+.
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 345555566677777799999999999999999998 889999999999999998888754 3322223344667666
Q ss_pred HHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHh---hhc----C---
Q 021323 189 LKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASML---ARN----G--- 258 (314)
Q Consensus 189 L~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavl---ARa----G--- 258 (314)
++. |. .++|||++|.-- |+.|| .+.||.-.. .|. |
T Consensus 143 v~~------~~------------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v 187 (282)
T COG0421 143 LRD------CE------------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFV 187 (282)
T ss_pred HHh------CC------------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEE
Confidence 631 11 168999999766 44443 455665432 232 3
Q ss_pred -CCceEEEe-----cCChhHHHHHhhhhccccccccccCceeceEecCC
Q 021323 259 -ETTNVVVH-----DVDRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQ 301 (314)
Q Consensus 259 -g~TdVfVH-----DVdR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~ 301 (314)
..-+-|.| +..|.++++|+..=..--.+-.-.+..|-|.+.+.
T Consensus 188 ~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 188 AQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred EecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 22235666 58899999999887777777777788999999873
No 4
>PLN02823 spermine synthase
Probab=93.55 E-value=0.41 Score=46.59 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce-eE-EEeeccchhhHHHHHHHHhcC
Q 021323 120 NLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ-IY-KVDYQRPAKDAYKLLKHARQN 195 (314)
Q Consensus 120 ~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~ar~~ 195 (314)
-.+....|-+.||.|+|-..+....+-|. .+-+.+|=|+.-++-+++-+|... ++ +=+-+-...||.+.|+..
T Consensus 97 ~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--- 173 (336)
T PLN02823 97 ALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--- 173 (336)
T ss_pred HHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---
Confidence 44455689999999999887776666664 567999999999999988766421 11 111222345666666310
Q ss_pred CCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhh
Q 021323 196 PACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLA 255 (314)
Q Consensus 196 ~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlA 255 (314)
+-+||||++|.+. |...|-....||.-.+.
T Consensus 174 ---------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 ---------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred ---------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1159999999865 33333335578866543
No 5
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.43 E-value=0.94 Score=41.71 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCc
Q 021323 120 NLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 120 ~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~l 171 (314)
..+....|=+.|+.|.|-..+....+.++ .+.+.+|-|+.-++.+++..+.+
T Consensus 66 ~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 66 PLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred HhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 34455667799999999888777777775 57889999999999888766543
No 6
>PRK01581 speE spermidine synthase; Validated
Probab=92.35 E-value=1 Score=45.19 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=87.5
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCce-----eE-EEeeccchhhHHHHHHHH
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQ-----IY-KVDYQRPAKDAYKLLKHA 192 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~a 192 (314)
.+....|=+.||.|.|-...+-..+-|. ++-+-+|=|+.-++-+++ +|.+. ++ +=+-+-.+.||.+.|+..
T Consensus 145 m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 145 MSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred HHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 3445778899999999777665566554 688889999999988885 44332 11 111122335566555310
Q ss_pred hcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc------CCCc-----
Q 021323 193 RQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN------GETT----- 261 (314)
Q Consensus 193 r~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa------Gg~T----- 261 (314)
+-++|||++|.|....+ .....||...+... ||.-
T Consensus 224 ------------------------------~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 ------------------------------SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ------------------------------CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 01699999998753322 24778877655443 4420
Q ss_pred -eEEEecCChhHHHHHhhhhcccccccc---ccCceeceEecCC
Q 021323 262 -NVVVHDVDRTIEKWFSWEFLCEENLVS---SKGKLWNFRLTDQ 301 (314)
Q Consensus 262 -dVfVHDVdR~VEk~fs~EFLC~~nLv~---~~GrLwHF~Ip~~ 301 (314)
-.+-.++-..+-+++...|+--..... +-|-+|=|.|.+.
T Consensus 270 sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 270 SPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred ChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 011122223356667777775554333 3377899999875
No 7
>PRK00811 spermidine synthase; Provisional
Probab=90.19 E-value=1 Score=42.02 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHhhccCCccEEEeccCchhhhhhhcCC-C-CcEEEecCChhhHHHhhhcCCCc
Q 021323 120 NLITSKAPCNLLIFGLDPQYLELSKANA-E-GITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 120 ~VL~~raPCNfLVFGLg~dslmWaalN~-g-GrTVFLEEd~~~i~~~~~~~p~l 171 (314)
-.+....|-++||.|.|-....-..+.+ + .+-+.+|=|+.-++.+++.++.+
T Consensus 70 ~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 70 PLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred HHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 3455578999999999998888777777 3 47799999999999988876643
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.79 E-value=1.2 Score=41.16 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCceeE--EEeeccchhhHHHH
Q 021323 113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQIY--KVDYQRPAKDAYKL 188 (314)
Q Consensus 113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~leay--~V~Y~T~~~ea~~L 188 (314)
.|.-+-.-++....|=|.||.|+|-...+-..+.|. .+...+|-|+.-++-+++-+|....- +=+.+-...||.+.
T Consensus 63 ~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~ 142 (246)
T PF01564_consen 63 HEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF 142 (246)
T ss_dssp HHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH
T ss_pred HHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH
Confidence 444444556666789999999999888888888876 67889999999988887755542211 11112234566666
Q ss_pred HHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc------CCCce
Q 021323 189 LKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN------GETTN 262 (314)
Q Consensus 189 L~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa------Gg~Td 262 (314)
|+... ++ .+|||++|.+. |..|+-. .||.-..... ||.--
T Consensus 143 l~~~~-------------------------~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 143 LKETQ-------------------------EE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp HHTSS-------------------------ST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHHHEEEEEEEE
T ss_pred HHhcc-------------------------CC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHhhcCCCcEEE
Confidence 64211 11 79999999987 4444333 6776544332 33211
Q ss_pred EEE-----e-cCChhHHHHHhhhhc-cccccc--ccc-CceeceEecCCC
Q 021323 263 VVV-----H-DVDRTIEKWFSWEFL-CEENLV--SSK-GKLWNFRLTDQS 302 (314)
Q Consensus 263 VfV-----H-DVdR~VEk~fs~EFL-C~~nLv--~~~-GrLwHF~Ip~~~ 302 (314)
+-. | +.-+.+.+.+...|- |.-+.+ -.- +..|-|.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 189 LQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD 238 (246)
T ss_dssp EEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred EEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence 111 1 122345555555554 222222 222 445788877653
No 9
>PRK04457 spermidine synthase; Provisional
Probab=86.91 E-value=8.4 Score=35.75 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred ccCCccEEEeccCchhhh--hhhcCCCCcEEEecCChhhHHHhhhcCC
Q 021323 124 SKAPCNLLIFGLDPQYLE--LSKANAEGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 124 ~raPCNfLVFGLg~dslm--WaalN~gGrTVFLEEd~~~i~~~~~~~p 169 (314)
...|=++|+.|+|-.++. |+...++++-+-+|=|+.-++.+++.+.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC
Confidence 456889999999977754 6666778888999999999998887653
No 10
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=84.33 E-value=4.1 Score=37.11 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhhccCCccEEEecc--Cchhhhhhh-cCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhH
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGL--DPQYLELSK-ANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDA 185 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmWaa-lN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea 185 (314)
+.++-+.+..+++...|=++|-.|- |..++.+++ +..+|+-+.+|-|+++++.+++.. .+++ ..| +-...+|
T Consensus 53 ~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i--~~~~gda 129 (234)
T PLN02781 53 PVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKI--NFIQSDA 129 (234)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcE--EEEEccH
Confidence 4455555555555567889999985 454455554 345799999999999998887643 2332 223 2345677
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCC
Q 021323 186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRG 236 (314)
Q Consensus 186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~G 236 (314)
.+.|..+..++. +-.+|+|.+|+.++
T Consensus 130 ~~~L~~l~~~~~-------------------------~~~fD~VfiDa~k~ 155 (234)
T PLN02781 130 LSALDQLLNNDP-------------------------KPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHHHhCCC-------------------------CCCCCEEEECCCHH
Confidence 777765543211 12689999999873
No 11
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=82.84 E-value=5.6 Score=36.09 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHhhccCCccEEEecc--Cchhhhhh-hcCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhH
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGL--DPQYLELS-KANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDA 185 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmWa-alN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea 185 (314)
+.++-+.+..+++..-|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++.+++.. -+++ .+|++ ...+|
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~--~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEV--IEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEE--EES-H
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEE--EEecc
Confidence 4456666666666688999999976 56666666 4556899999999999988877522 2332 23433 34778
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCC
Q 021323 186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML 239 (314)
Q Consensus 186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~p 239 (314)
.+.|..+..+.. +-.+|+|.|||.++-++
T Consensus 107 ~~~l~~l~~~~~-------------------------~~~fD~VFiDa~K~~y~ 135 (205)
T PF01596_consen 107 LEVLPELANDGE-------------------------EGQFDFVFIDADKRNYL 135 (205)
T ss_dssp HHHHHHHHHTTT-------------------------TTSEEEEEEESTGGGHH
T ss_pred HhhHHHHHhccC-------------------------CCceeEEEEcccccchh
Confidence 888876553210 23689999999886443
No 12
>PRK03612 spermidine synthase; Provisional
Probab=82.20 E-value=7.7 Score=39.61 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.7
Q ss_pred hccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhh
Q 021323 123 TSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKR 166 (314)
Q Consensus 123 ~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~ 166 (314)
..+.|-+.|+.|.|-....-..+.|+ .+-+.+|=|++-++.+++
T Consensus 294 ~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 294 ASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence 34678999999999887776666765 589999999999999887
No 13
>PLN02476 O-methyltransferase
Probab=82.16 E-value=9 Score=36.80 Aligned_cols=101 Identities=21% Similarity=0.146 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCch-hhhhhh--cCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchh
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQ-YLELSK--ANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAK 183 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmWaa--lN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ 183 (314)
..+.++-+.+..+++...|=++|=.|-+-. |.+|.| ++.+|+-+=+|-|+++++.+++.. -+++ +.|.. ...
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~l--i~G 177 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNV--KHG 177 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEE--EEc
Confidence 346666666777777778889999976532 344554 356899999999999988777633 3443 33433 246
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCC
Q 021323 184 DAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGD 237 (314)
Q Consensus 184 ea~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy 237 (314)
+|.+.|..+..+. .+-.+|+|.|||+++-
T Consensus 178 dA~e~L~~l~~~~-------------------------~~~~FD~VFIDa~K~~ 206 (278)
T PLN02476 178 LAAESLKSMIQNG-------------------------EGSSYDFAFVDADKRM 206 (278)
T ss_pred CHHHHHHHHHhcc-------------------------cCCCCCEEEECCCHHH
Confidence 7777776553210 0134899999999853
No 14
>PLN02366 spermidine synthase
Probab=79.75 E-value=7.6 Score=37.40 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=83.2
Q ss_pred hhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCCcee-E-EEeeccchhhHHHHHHHHhcCCC
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNRTQI-Y-KVDYQRPAKDAYKLLKHARQNPA 197 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~lea-y-~V~Y~T~~~ea~~LL~~ar~~~~ 197 (314)
.....|=+.||.|.|...+.-..+.|. .+-+.+|=|+.-|+.+++.+|.+.. + +=+.+-...||.+.++
T Consensus 87 ~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~------- 159 (308)
T PLN02366 87 CSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK------- 159 (308)
T ss_pred hhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-------
Confidence 345679999999999877765556653 4667889999999988887765310 0 0011112234444442
Q ss_pred CCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc------CCC-----ceEEEe
Q 021323 198 CAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN------GET-----TNVVVH 266 (314)
Q Consensus 198 C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa------Gg~-----TdVfVH 266 (314)
+.| +-.+|||++|++....| + ...||...+... ||. +..+.|
T Consensus 160 ------------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 160 ------------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred ------------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 111 12599999999876543 1 335555444332 331 122332
Q ss_pred -cCChhHHHHHhhhhc--cccccc--ccc-CceeceEecCCC
Q 021323 267 -DVDRTIEKWFSWEFL--CEENLV--SSK-GKLWNFRLTDQS 302 (314)
Q Consensus 267 -DVdR~VEk~fs~EFL--C~~nLv--~~~-GrLwHF~Ip~~~ 302 (314)
+.-+.+-+.+...|- ..-|.+ -.- |-.|-|.+.+.+
T Consensus 213 ~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 213 MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 333456666677771 111111 112 467999998764
No 15
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=74.85 E-value=9.9 Score=33.07 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCcCCHHHHHHHH-HHhhccCCccEEEeccCchhh--hhhh-cCCCCcEEEecCChhhHHHhhhc
Q 021323 107 ASALTKKEFKFLS-NLITSKAPCNLLIFGLDPQYL--ELSK-ANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 107 ~~~~t~~Ei~~~~-~VL~~raPCNfLVFGLg~dsl--mWaa-lN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
...||.+|++.+. .-+.-+...++|.+|-|...+ .++. +..+|+-+-+|-++..++.++++
T Consensus 20 ~~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 20 EIPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3459999998775 333335668999999976544 3332 34457778889999998877654
No 16
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=71.35 E-value=5 Score=30.73 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 021323 226 WDVIVVDGPRGDML 239 (314)
Q Consensus 226 WDvImVDgP~Gy~p 239 (314)
.|+|+||.|.++.+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 89999999997754
No 17
>COG5125 Uncharacterized conserved protein [Function unknown]
Probab=69.71 E-value=6.7 Score=37.52 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhccCCccEEEeccCchhh-------hhhhcC-CCCcEEEecCChhhHHHhhh-cC
Q 021323 98 PGTSTNLPNASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYL-------ELSKAN-AEGITVFLEDDSNKINAVKR-KS 168 (314)
Q Consensus 98 ~~~~t~~~~~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dsl-------mWaalN-~gGrTVFLEEd~~~i~~~~~-~~ 168 (314)
+-|+|.|-.++. +.+-++-+++.|+...|-||+=|=..|+|. .+-++= ..|. .|||+|++-+-.+.. ..
T Consensus 150 ~~NiT~QE~~~e-~~K~~~~iSrlL~~~g~~N~fKFIidP~Sfs~tiENLFY~SFL~KEGK-a~le~dE~G~l~i~~~~s 227 (259)
T COG5125 150 PTNITRQEDSVE-EPKILAQISRLLAEKGRTNYFKFIIDPRSFSKTIENLFYLSFLLKEGK-AFLEFDEDGTLYVVSEGS 227 (259)
T ss_pred ccccccccCCcc-hhhHHHHHHHHhcccCCcceeEEecCcchhhHHHHHHHHHHHHHhcCh-hheeecCCCcEEEEeeee
Confidence 456777755545 888999999999999999999999988764 333322 2354 789999988665543 12
Q ss_pred CCceeEEEeeccchhhHHHHHHHHh
Q 021323 169 NRTQIYKVDYQRPAKDAYKLLKHAR 193 (314)
Q Consensus 169 p~leay~V~Y~T~~~ea~~LL~~ar 193 (314)
-+.---|+-++....+..+|++.+-
T Consensus 228 ~~~s~~h~i~~m~~~~~~~~i~~~~ 252 (259)
T COG5125 228 EGASTGHLVVEMTYDEYLRIVERMG 252 (259)
T ss_pred eccccccEEEEeccHHHHHHHHHhC
Confidence 2222236777777788888887653
No 18
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=68.00 E-value=1.6 Score=42.51 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=20.9
Q ss_pred ccccCCchhhhccCccEEEEe-CCCCC
Q 021323 212 LTRKDLPQEVFKHKWDVIVVD-GPRGD 237 (314)
Q Consensus 212 LAL~~LP~evYe~~WDvImVD-gP~Gy 237 (314)
+++..+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 455666677888999999999 78886
No 19
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=66.28 E-value=4.4 Score=29.90 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=37.2
Q ss_pred CccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCCCceEEEecCChhHHHHH
Q 021323 225 KWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRTIEKWF 276 (314)
Q Consensus 225 ~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg~TdVfVHDVdR~VEk~f 276 (314)
.|-|-.-.+- .-.-..+-+-.||=-|-.+|+..+.+.|+||+-|..||+..
T Consensus 10 ~W~v~~eg~~-ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 10 GWAVKKEGAK-RASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKIREER 60 (62)
T ss_pred CceEEeCCCc-ccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeEEEee
Confidence 3666554322 12344556778999999999997789999999999998653
No 20
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=57.09 E-value=3.3 Score=33.62 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=22.3
Q ss_pred cccccCCchhhhccCccEEEEeCCCCCCCCCCCc
Q 021323 211 KLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGR 244 (314)
Q Consensus 211 kLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGR 244 (314)
..-++++++..|++||||+=-+ -|-|.|||
T Consensus 42 ~VnI~~~~~~~~~~EWDVv~C~----SF~ee~Gk 71 (77)
T PF10718_consen 42 HVNIRSLKNGEIEMEWDVVGCL----SFVEEPGK 71 (77)
T ss_pred EEEEEeCCCCcEEEEEEecccc----cchhcCCc
Confidence 3567899999999999998433 24555665
No 21
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=56.95 E-value=44 Score=31.41 Aligned_cols=102 Identities=16% Similarity=0.242 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHhhccCCccEEEecc--Cchhhhhh-hcCCCCcEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhH
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGL--DPQYLELS-KANAEGITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDA 185 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmWa-alN~gGrTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea 185 (314)
+.++-+.+..+++...|=|.|-+|- |--++.++ ++..+|+-+=+|=|+++++.+++.. -++. .+|.+. ..+|
T Consensus 64 ~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~--~G~a 140 (247)
T PLN02589 64 SADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFR--EGPA 140 (247)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEE--eccH
Confidence 5677788887887788889999985 44444333 3456899999999999988776533 2332 455443 4577
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCC
Q 021323 186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML 239 (314)
Q Consensus 186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~p 239 (314)
.+.|.....+. -|+-.+|+|.|||=++-++
T Consensus 141 ~e~L~~l~~~~------------------------~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 141 LPVLDQMIEDG------------------------KYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHHHHHHHhcc------------------------ccCCcccEEEecCCHHHhH
Confidence 77776554320 0234599999998876543
No 22
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.92 E-value=84 Score=24.32 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhhhhh-----hcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHH
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELS-----KANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKL 188 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWa-----alN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~L 188 (314)
+|..+++.|.+. .+++|||-|+...... ....|-...++.+...+........++--+--+...-.-.+.-++
T Consensus 2 ~i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEA 79 (139)
T ss_pred HHHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHH
Confidence 466677777664 6899999997554333 223345555565555544444434445444455555455667777
Q ss_pred HHHHhcC
Q 021323 189 LKHARQN 195 (314)
Q Consensus 189 L~~ar~~ 195 (314)
++.+|+.
T Consensus 80 ~~~a~~~ 86 (139)
T cd05013 80 AEIAKER 86 (139)
T ss_pred HHHHHHc
Confidence 7777764
No 23
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=51.77 E-value=10 Score=37.85 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.7
Q ss_pred ccEEEEeCCCCCCCCCCCcchhhhhhhH
Q 021323 226 WDVIVVDGPRGDMLEAPGRMSTIYTASM 253 (314)
Q Consensus 226 WDvImVDgP~Gy~peaPGRM~AIyTAav 253 (314)
--.|+||+-.|+-||==-|.-+|||.|-
T Consensus 261 ~rfIiVd~t~~FkpeyWdRVVciFttG~ 288 (362)
T COG5157 261 FRFIIVDDTGGFKPEYWDRVVCIFTTGS 288 (362)
T ss_pred eEEEEEcCCCCcChhhhceEEEEEecCC
Confidence 4579999999999999999999999885
No 24
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=51.49 E-value=7.1 Score=36.50 Aligned_cols=26 Identities=31% Similarity=0.764 Sum_probs=19.2
Q ss_pred cCccEEEEe-CCCCC---CCCCCCcchhhh
Q 021323 224 HKWDVIVVD-GPRGD---MLEAPGRMSTIY 249 (314)
Q Consensus 224 ~~WDvImVD-gP~Gy---~peaPGRM~AIy 249 (314)
-+||+|+|| +|+|. +-+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 579999999 67776 456777776544
No 25
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=48.25 E-value=16 Score=36.25 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=39.8
Q ss_pred CcCCHHHHHHHHHHhhccCC-cc-EEEeccC-chhh-----hhhhcCC---C---CcEEEecCChhhHH
Q 021323 108 SALTKKEFKFLSNLITSKAP-CN-LLIFGLD-PQYL-----ELSKANA---E---GITVFLEDDSNKIN 162 (314)
Q Consensus 108 ~~~t~~Ei~~~~~VL~~raP-CN-fLVFGLg-~dsl-----mWaalN~---g---GrTVFLEEd~~~i~ 162 (314)
+.||.+.-..+..+++++-| |. ++|.||+ |+-- .=++-.+ | |||||-|-...|.+
T Consensus 216 ep~s~~~W~~i~~~I~~~Dp~crGvVvLGLdAP~e~L~~~F~~Aa~~p~vkGFAVGRTIF~~~sr~Wl~ 284 (311)
T PF09863_consen 216 EPLSAAAWQAIEALIEERDPYCRGVVVLGLDAPEEELAAGFAAAAGSPLVKGFAVGRTIFGEPSRAWLA 284 (311)
T ss_pred CCCCHHHHHHHHHHHHHhCCCceeEEEecCCCCHHHHHHHHHHhhCCCceeeeeechhhhHHHHHHHHc
Confidence 34499999999999999765 76 8888998 3322 2222223 3 99999998888843
No 26
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=45.46 E-value=18 Score=31.70 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=37.1
Q ss_pred CcCCHHHHHHHHHHhhccC-------CccEEEe-----ccCchh----hhhhhc-CCCCcEEEecCChhh
Q 021323 108 SALTKKEFKFLSNLITSKA-------PCNLLIF-----GLDPQY----LELSKA-NAEGITVFLEDDSNK 160 (314)
Q Consensus 108 ~~~t~~Ei~~~~~VL~~ra-------PCNfLVF-----GLg~ds----lmWaal-N~gGrTVFLEEd~~~ 160 (314)
.+-+.+|++.+.+.|..++ -.+.+.| |-|.-+ +.|+.. ++|-|++.+|-|+.-
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 8 RSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 3447889999999988654 4776666 445444 455433 468899999999864
No 27
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=45.39 E-value=14 Score=34.40 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=67.6
Q ss_pred cCCccEEEeccCchhhhhhhcCCC-----CcEEEecC--ChhhHHHh----hhcCCCce--------eEEEeeccchhhH
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAE-----GITVFLED--DSNKINAV----KRKSNRTQ--------IYKVDYQRPAKDA 185 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~g-----GrTVFLEE--d~~~i~~~----~~~~p~le--------ay~V~Y~T~~~ea 185 (314)
.+||-|.|||-| |||| |++ .++.|+.- -..|+.+. ....|++- .--|.|+-+-.++
T Consensus 7 ~~~~~~WVFgYG--SLmW---~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~~GGsc~GvafRip~~~~ 81 (190)
T COG3703 7 ADPDELWVFGYG--SLMW---NPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLDRGGSCEGVAYRIPEAHA 81 (190)
T ss_pred cCCCCeEEEEec--ceee---cCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEeeCCCcEEEEEEEcCchhh
Confidence 467779999987 9999 876 44555432 11111111 13556653 4578999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc
Q 021323 186 YKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN 257 (314)
Q Consensus 186 ~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa 257 (314)
++-++.+++.+-=-. ..-.---|+..+.+ -. ..==+..|+-++ .++-.|++..==+|+++|++
T Consensus 82 ~~v~~yL~~RE~~~t--~~y~p~~l~v~~~~---g~--~~~al~~v~~~~--h~qyag~l~~~~~A~~ia~a 144 (190)
T COG3703 82 EEVLEYLREREMNYT--LVYVPRWLPVELEG---GR--RVNALVFVGDRK--HPQYAGDLDAEQIAAIIAAA 144 (190)
T ss_pred HHHHHHHHHhhcccc--ceeeeEEEEEecCC---Cc--EEEEEEEEecCC--ccccCCCCcHHHHHHHHHHH
Confidence 999888886433110 00001112222111 00 000123333333 57888899998899999998
No 28
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=44.18 E-value=8.5 Score=34.14 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=16.6
Q ss_pred ccCCchhhhccCccEEEEeCCCC
Q 021323 214 RKDLPQEVFKHKWDVIVVDGPRG 236 (314)
Q Consensus 214 L~~LP~evYe~~WDvImVDgP~G 236 (314)
+..+=+.+-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 45555555455699999999985
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=42.55 E-value=17 Score=29.72 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=29.4
Q ss_pred HHHHHHHHHHh---hccCCccEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcCCCceeEEEeeccc
Q 021323 112 KKEFKFLSNLI---TSKAPCNLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKSNRTQIYKVDYQRP 181 (314)
Q Consensus 112 ~~Ei~~~~~VL---~~raPCNfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~ 181 (314)
.+|+..+.+.| ....|.+++|.| .+| |+|.+|.+ +.+.+.+. ... ...+.+...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G-----------~~G~GKT~ll~~---~~~~~~~~-~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTG-----------ESGSGKTSLLRA---LLDRLAER-GGY-VISINCDDS 63 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B------------TTSSHHHHHHH---HHHHHHHH-T---EEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEC-----------CCCCCHHHHHHH---HHHHHHhc-CCE-EEEEEEecc
Confidence 46888888888 336799999998 446 77777764 55555555 223 455555544
No 30
>PRK08618 ornithine cyclodeaminase; Validated
Probab=40.60 E-value=1.1e+02 Score=29.30 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCcCCHHHHHHHHHHhhccCCccEEEeccCchh--hhhhhc-CCCCcEEEe-cCChhhHHHhhhcCC---CceeEEEeec
Q 021323 107 ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQY--LELSKA-NAEGITVFL-EDDSNKINAVKRKSN---RTQIYKVDYQ 179 (314)
Q Consensus 107 ~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~ds--lmWaal-N~gGrTVFL-EEd~~~i~~~~~~~p---~leay~V~Y~ 179 (314)
|.-.|.+==.+..+.|.++.+.+++|||.|.+. .+++.+ ..+-+.|.+ .-+++-.+.+.++.. ++++. .|
T Consensus 107 T~~RTaa~sala~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~--~~- 183 (325)
T PRK08618 107 TQIRTGALSGVATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY--VV- 183 (325)
T ss_pred hhhhHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE--Ee-
Confidence 444566666667788988889999999999875 333322 234455544 555555444443221 22211 12
Q ss_pred cchhhHHHHHHHHhcCC---CCCCCCCCCC----Cccccc--------cccCCchhhhccCccEEEEeCC
Q 021323 180 RPAKDAYKLLKHARQNP---ACAPRSELLP----SSKCKL--------TRKDLPQEVFKHKWDVIVVDGP 234 (314)
Q Consensus 180 T~~~ea~~LL~~ar~~~---~C~p~~~~l~----~S~CkL--------AL~~LP~evYe~~WDvImVDgP 234 (314)
.+..+++ ++.. .|.|....+. ...+-+ ..+.+|.++.+-. |.|+||-.
T Consensus 184 ---~~~~~~~---~~aDiVi~aT~s~~p~i~~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a-~~vvvD~~ 246 (325)
T PRK08618 184 ---NSADEAI---EEADIIVTVTNAKTPVFSEKLKKGVHINAVGSFMPDMQELPSEAIARA-NKVVVESK 246 (325)
T ss_pred ---CCHHHHH---hcCCEEEEccCCCCcchHHhcCCCcEEEecCCCCcccccCCHHHHhhC-CEEEECCH
Confidence 3344444 2221 1666543321 122222 3567888777643 77888864
No 31
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=40.07 E-value=29 Score=37.34 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=30.3
Q ss_pred cCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCCCceEEEecCChh
Q 021323 224 HKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHDVDRT 271 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg~TdVfVHDVdR~ 271 (314)
.+||||+|-|.- +++=-|...||-|-.|.+++|..|--
T Consensus 3 ~~~DVIVIGgGH----------AG~EAA~AaARmG~ktlLlT~~~dti 40 (621)
T COG0445 3 KEYDVIVIGGGH----------AGVEAALAAARMGAKTLLLTLNLDTI 40 (621)
T ss_pred CCCceEEECCCc----------cchHHHHhhhccCCeEEEEEcCCCce
Confidence 459999998876 55556677778799999999998853
No 32
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=40.03 E-value=36 Score=26.10 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=51.1
Q ss_pred cEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcCCCcee-EEEeeccchhhHHHHHHHHhcCCCCCCCCCCCC
Q 021323 129 NLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKSNRTQI-YKVDYQRPAKDAYKLLKHARQNPACAPRSELLP 206 (314)
Q Consensus 129 NfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~p~lea-y~V~Y~T~~~ea~~LL~~ar~~~~C~p~~~~l~ 206 (314)
.+|-.|-|-..++..++..+ .+.+-+|=|+.-++.++.+.+.... ..++ -...++.++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~--~~~~D~~~~------------------ 62 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVE--VIVGDARDL------------------ 62 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEE--EEESHHHHH------------------
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEE--EEECchhhc------------------
Confidence 35677888888888888877 7888899999988888765554322 0011 111222222
Q ss_pred CccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhh
Q 021323 207 SSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIY 249 (314)
Q Consensus 207 ~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIy 249 (314)
+..+-+-.+|+|+-|-|-+...+.......+|
T Consensus 63 -----------~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~ 94 (117)
T PF13659_consen 63 -----------PEPLPDGKFDLIVTNPPYGPRSGDKAALRRLY 94 (117)
T ss_dssp -----------HHTCTTT-EEEEEE--STTSBTT----GGCHH
T ss_pred -----------hhhccCceeEEEEECCCCccccccchhhHHHH
Confidence 12223456999999999987655444433333
No 33
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=39.78 E-value=27 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=16.7
Q ss_pred cEEEEeCCCCCCCCCCCcchhhhhhhHhhhc
Q 021323 227 DVIVVDGPRGDMLEAPGRMSTIYTASMLARN 257 (314)
Q Consensus 227 DvImVDgP~Gy~peaPGRM~AIyTAavlARa 257 (314)
|+|+||.|.|+.. ++..+++.+
T Consensus 44 D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 44 DYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CEEEEeCCCCcCH---------HHHHHHHHc
Confidence 9999999998743 456666665
No 34
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=39.66 E-value=11 Score=34.63 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=14.0
Q ss_pred hhhhhcCCCCcEEEecCChh
Q 021323 140 LELSKANAEGITVFLEDDSN 159 (314)
Q Consensus 140 lmWaalN~gGrTVFLEEd~~ 159 (314)
+.++....|=||+.++-|+.
T Consensus 20 la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 20 TAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred HHHHHHHCCCCceEEeCCCc
Confidence 44555566778888888875
No 35
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=39.13 E-value=40 Score=26.19 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=65.1
Q ss_pred EEEeccCchh-hhhhhcCCCC-cEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHHHhcCCCCCCCCCCCCC
Q 021323 130 LLIFGLDPQY-LELSKANAEG-ITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSELLPS 207 (314)
Q Consensus 130 fLVFGLg~ds-lmWaalN~gG-rTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~~~C~p~~~~l~~ 207 (314)
++|+|.|.-. .+-..|-.+| +-+.+|.|+..+..+++.. +++-|-. ..+-+- |+.+.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd-~~~~~~-l~~a~i~------------ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGD-ATDPEV-LERAGIE------------ 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES--TTSHHH-HHHTTGG------------
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----ccccccc-chhhhH-HhhcCcc------------
Confidence 5899999544 3445666788 7999999999999999877 3344432 223232 3333221
Q ss_pred ccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc-CCCceEEEecCChhHHHHHhh
Q 021323 208 SKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN-GETTNVVVHDVDRTIEKWFSW 278 (314)
Q Consensus 208 S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa-Gg~TdVfVHDVdR~VEk~fs~ 278 (314)
+ =|.|++..+. . ..-..++.+||. ++...|+++=-|+.-++.|..
T Consensus 62 -~----------------a~~vv~~~~~---d------~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 -K----------------ADAVVILTDD---D------EENLLIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp -C----------------ESEEEEESSS---H------HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred -c----------------cCEEEEccCC---H------HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 1 1344454442 1 455667777787 777889888888887777754
No 36
>PRK07402 precorrin-6B methylase; Provisional
Probab=37.79 E-value=1.1e+02 Score=26.32 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=44.6
Q ss_pred cCCHHHHHH-HHHHhhccCCccEEEeccCchh--hhhhhcCCCCcEEEecCChhhHHHhhhcC
Q 021323 109 ALTKKEFKF-LSNLITSKAPCNLLIFGLDPQY--LELSKANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 109 ~~t~~Ei~~-~~~VL~~raPCNfLVFGLg~ds--lmWaalN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
.+|..|++. +.+.|.-+..-.+|=+|=|... ..++..+++++-+-+|-|+.-++.++++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~ 84 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC 84 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 589999996 5777765555688888776554 34444567788888999999998887654
No 37
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=35.95 E-value=2.9e+02 Score=23.84 Aligned_cols=124 Identities=8% Similarity=-0.034 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhh----ccCCccEEEecc-Cc--hhhhhhhcCCCCcEEEecCChhhHHHhhhcCC---CceeEEEeeccc
Q 021323 112 KKEFKFLSNLIT----SKAPCNLLIFGL-DP--QYLELSKANAEGITVFLEDDSNKINAVKRKSN---RTQIYKVDYQRP 181 (314)
Q Consensus 112 ~~Ei~~~~~VL~----~raPCNfLVFGL-g~--dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p---~leay~V~Y~T~ 181 (314)
.+=+..+.+.|+ ...-.+.||||= |. .........+|.+.+.+.-+.+..+.+.+... +.+...+.
T Consensus 9 ~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~---- 84 (194)
T cd01078 9 AAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVE---- 84 (194)
T ss_pred HHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEee----
Confidence 444556666665 334578999985 53 23344444555454445666665555544321 22222221
Q ss_pred hhhHHHHHHHHhcCCC---CCCCCCC--CCC-cc---ccccc-----cCCchhhhccCccEEEEeCCCCCCC
Q 021323 182 AKDAYKLLKHARQNPA---CAPRSEL--LPS-SK---CKLTR-----KDLPQEVFKHKWDVIVVDGPRGDML 239 (314)
Q Consensus 182 ~~ea~~LL~~ar~~~~---C~p~~~~--l~~-S~---CkLAL-----~~LP~evYe~~WDvImVDgP~Gy~p 239 (314)
..+.+++.+.+++..- |.+.... ... .. .++.+ .+...++-+...|++++|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 156 (194)
T cd01078 85 TSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPYGA 156 (194)
T ss_pred CCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcccccccCCceecCCCeEEEe
Confidence 2234444443433211 4443220 000 01 11111 2444455667888888888876643
No 38
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=34.56 E-value=25 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=13.8
Q ss_pred cCccEEEEeCCCCCCC
Q 021323 224 HKWDVIVVDGPRGDML 239 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~p 239 (314)
-++|+|+||.|.|+..
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4789999999999864
No 39
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.28 E-value=23 Score=33.60 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.2
Q ss_pred ccCccEEEEeCCCCCCC
Q 021323 223 KHKWDVIVVDGPRGDML 239 (314)
Q Consensus 223 e~~WDvImVDgP~Gy~p 239 (314)
.-.||+|+||-|.|..|
T Consensus 115 ~~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 115 LGPYDWILIDTPPGPSP 131 (243)
T ss_pred cCCCCEEEEeCCCCCcH
Confidence 35699999999998765
No 40
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=34.09 E-value=60 Score=26.79 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.9
Q ss_pred ccEEEEeCCCCCCC
Q 021323 226 WDVIVVDGPRGDML 239 (314)
Q Consensus 226 WDvImVDgP~Gy~p 239 (314)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988654
No 41
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=34.06 E-value=46 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCcchhhhhhhHhhhcCCCceEEEecCChh
Q 021323 242 PGRMSTIYTASMLARNGETTNVVVHDVDRT 271 (314)
Q Consensus 242 PGRM~AIyTAavlARaGg~TdVfVHDVdR~ 271 (314)
+|++++|++|---+...+.-.||||++|++
T Consensus 78 ~G~~~si~~gl~~~~~~~~d~vlv~~~D~P 107 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEAMGADAVVILLADQP 107 (190)
T ss_pred hhHHHHHHHHHHHhccCCCCeEEEEeCCCC
Confidence 589999998765443323446999999985
No 42
>PF13479 AAA_24: AAA domain
Probab=33.60 E-value=60 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCccEEEe---ccCchhhhhhhcCCCCcEEEecCChh
Q 021323 126 APCNLLIF---GLDPQYLELSKANAEGITVFLEDDSN 159 (314)
Q Consensus 126 aPCNfLVF---GLg~dslmWaalN~gGrTVFLEEd~~ 159 (314)
-|=++||+ |.|.-+++... ++++||+=+..
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 45688999 56888888766 99999987766
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=32.78 E-value=1.3e+02 Score=22.91 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred CCHHHHHH-HHHHhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhh
Q 021323 110 LTKKEFKF-LSNLITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKR 166 (314)
Q Consensus 110 ~t~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~ 166 (314)
|+..|+.. +.+.+.-...-++|-+|-|.....+...+. +++-+-+|-++..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 2 MTKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CchHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 46666555 333333233347999998877776655543 4566667777766666554
No 44
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=32.58 E-value=30 Score=34.33 Aligned_cols=62 Identities=21% Similarity=0.414 Sum_probs=38.5
Q ss_pred hhccCc---cEEEEeCCCCCCCCCCCcchh--hhhhhHhhhcCCCceEEEecCChhHHHHHhhhhccccccccccC
Q 021323 221 VFKHKW---DVIVVDGPRGDMLEAPGRMST--IYTASMLARNGETTNVVVHDVDRTIEKWFSWEFLCEENLVSSKG 291 (314)
Q Consensus 221 vYe~~W---DvImVDgP~Gy~peaPGRM~A--IyTAavlARaGg~TdVfVHDVdR~VEk~fs~EFLC~~nLv~~~G 291 (314)
+=+++| |+++||.|.|-..|-=.=+.. +++.||+-- ..-+|.+-||+|++. +|++.-+.-.|
T Consensus 149 lk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVT--TPQ~vAl~Dv~K~i~-------fc~K~~I~ilG 215 (300)
T KOG3022|consen 149 LKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVT--TPQEVALQDVRKEID-------FCRKAGIPILG 215 (300)
T ss_pred HhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEe--CchhhhhHHHHhhhh-------hhhhcCCceEE
Confidence 456788 999999999987653111100 002222211 345788999999998 78877665443
No 45
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=30.82 E-value=29 Score=33.15 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=27.4
Q ss_pred hhhhcCCCCcEEEecCChhh-HHHhhh---------cC--CCceeEEEeeccchhhHHHHH
Q 021323 141 ELSKANAEGITVFLEDDSNK-INAVKR---------KS--NRTQIYKVDYQRPAKDAYKLL 189 (314)
Q Consensus 141 mWaalN~gGrTVFLEEd~~~-i~~~~~---------~~--p~leay~V~Y~T~~~ea~~LL 189 (314)
..++-+.|-||+-+.=||.- ++.+-. -. ++|.+..+.-...+++.++-+
T Consensus 22 A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~ 82 (305)
T PF02374_consen 22 ALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEV 82 (305)
T ss_dssp HHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHH
T ss_pred HHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHH
Confidence 34444678889999888864 222222 22 777777777666566554443
No 46
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=30.15 E-value=81 Score=27.08 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=22.7
Q ss_pred cEEEEeCCCCCCCCC--CCcc-hhhhhhhHhhhcCCCceEEEecCCh
Q 021323 227 DVIVVDGPRGDMLEA--PGRM-STIYTASMLARNGETTNVVVHDVDR 270 (314)
Q Consensus 227 DvImVDgP~Gy~pea--PGRM-~AIyTAavlARaGg~TdVfVHDVdR 270 (314)
.+++||.| ||+... .-.+ .-|--...++..|-..=+||+|.+|
T Consensus 50 ~i~viDTP-G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 50 RVNVIDTP-GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred EEEEEECc-CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 58999999 666432 1111 1222222222234445567888887
No 47
>PHA02663 hypothetical protein; Provisional
Probab=30.00 E-value=32 Score=31.09 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.3
Q ss_pred CCCCCcc-hhhhhhhHhhhc
Q 021323 239 LEAPGRM-STIYTASMLARN 257 (314)
Q Consensus 239 peaPGRM-~AIyTAavlARa 257 (314)
|.+|||| .||=--|.|.|-
T Consensus 82 ptspgrmvtavelcaqmgr~ 101 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRL 101 (172)
T ss_pred CCCCcchhHHHHHHHHHHHH
Confidence 6799999 888888888876
No 48
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.57 E-value=22 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=22.9
Q ss_pred CCccEEEe--ccC---c----hhhhhhhcCCCCcEEEecCChhh
Q 021323 126 APCNLLIF--GLD---P----QYLELSKANAEGITVFLEDDSNK 160 (314)
Q Consensus 126 aPCNfLVF--GLg---~----dslmWaalN~gGrTVFLEEd~~~ 160 (314)
..+|.++- |.| . -.|.++.---|-|+.+||-|-+-
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~g 98 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRG 98 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCC
Confidence 37776654 444 2 23555555567899999988765
No 49
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.36 E-value=1.7e+02 Score=23.09 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=40.5
Q ss_pred cEEEeccCchhhhhhh----cCCCCcEEEecCChhhHH-HhhhcCCCceeEEEeeccchhhHHHHHHHHhcCC
Q 021323 129 NLLIFGLDPQYLELSK----ANAEGITVFLEDDSNKIN-AVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNP 196 (314)
Q Consensus 129 NfLVFGLg~dslmWaa----lN~gGrTVFLEEd~~~i~-~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~~ 196 (314)
++.|||.|....+... ++.-|..+++.++.+.+. ......++--+--+.|.-.-.|.-+.++.+|++.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g 74 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRG 74 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC
Confidence 4789999954443222 233355555555544332 2333334444667788888888888898888753
No 50
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.31 E-value=24 Score=31.81 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=11.0
Q ss_pred CccEEEEeCCCCC
Q 021323 225 KWDVIVVDGPRGD 237 (314)
Q Consensus 225 ~WDvImVDgP~Gy 237 (314)
++|+|+||.|.+.
T Consensus 115 ~yD~ViID~~~~~ 127 (268)
T TIGR01281 115 DYDVILFDVLGDV 127 (268)
T ss_pred cCCEEEEecCCcc
Confidence 6999999997654
No 51
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.51 E-value=1e+02 Score=24.08 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=51.2
Q ss_pred cEEEeccCchh-----hhhhhcCCCCcEEEecCChhhHHH-hhhcCCCceeEEEeeccchhhHHHHHHHHhcC
Q 021323 129 NLLIFGLDPQY-----LELSKANAEGITVFLEDDSNKINA-VKRKSNRTQIYKVDYQRPAKDAYKLLKHARQN 195 (314)
Q Consensus 129 NfLVFGLg~ds-----lmWaalN~gGrTVFLEEd~~~i~~-~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~ 195 (314)
++.|||.|-.+ +.+.-.--|+.-.+.++...+... +....++--.--+.|.-.-.|..++++.+|+.
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~ 79 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKER 79 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHT
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhc
Confidence 78899999433 233223346888888888887666 77778888888889999999999999999874
No 52
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=28.27 E-value=73 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=20.8
Q ss_pred Cccccccc----cCCchhhhccCccEEEEeCCCCCC
Q 021323 207 SSKCKLTR----KDLPQEVFKHKWDVIVVDGPRGDM 238 (314)
Q Consensus 207 ~S~CkLAL----~~LP~evYe~~WDvImVDgP~Gy~ 238 (314)
...|-.+- +.+=+++-....|.++||.+.|..
T Consensus 64 ~~g~~~~~n~~~~~~l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 64 GEGCYCPENALLNALLRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred CCCCEehhhHHHHHHHHHeEccCCCEEEEecHHHHH
Confidence 44555555 334344445678999999998863
No 53
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.16 E-value=34 Score=30.55 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=11.8
Q ss_pred cCccEEEEeCCCCC
Q 021323 224 HKWDVIVVDGPRGD 237 (314)
Q Consensus 224 ~~WDvImVDgP~Gy 237 (314)
-+||+|+||.|.+.
T Consensus 118 ~~yD~iiID~pp~l 131 (259)
T COG1192 118 DDYDYIIIDTPPSL 131 (259)
T ss_pred cCCCEEEECCCCch
Confidence 47999999999754
No 54
>PHA02913 TGF-beta-like protein; Provisional
Probab=27.56 E-value=32 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.6
Q ss_pred CccccccccCCchhh-hccCccEEEEeCCCCCCC
Q 021323 207 SSKCKLTRKDLPQEV-FKHKWDVIVVDGPRGDML 239 (314)
Q Consensus 207 ~S~CkLAL~~LP~ev-Ye~~WDvImVDgP~Gy~p 239 (314)
.+.|.. +.|==.+ =|+.||+|+ +|+||.+
T Consensus 74 ~~~CcR--~~lyVDF~~dIGWdWII--APkgY~A 103 (172)
T PHA02913 74 DAICCI--RDFNIDFKADMGMKWIL--KPEGTHA 103 (172)
T ss_pred CCCcee--EEEEechhhccCcceEe--cCCCeee
Confidence 334543 3444456 589999887 9999965
No 55
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=27.43 E-value=32 Score=33.20 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=18.2
Q ss_pred cCCchhhhccCccEEEEeC-----CCCCC
Q 021323 215 KDLPQEVFKHKWDVIVVDG-----PRGDM 238 (314)
Q Consensus 215 ~~LP~evYe~~WDvImVDg-----P~Gy~ 238 (314)
+..|.|=.+..=||||||| |+|+.
T Consensus 105 ~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 105 KSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HhcccccCCccccEEEEcCCceEcccccc
Confidence 5666666666789999998 77774
No 56
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=27.12 E-value=19 Score=26.79 Aligned_cols=33 Identities=39% Similarity=0.773 Sum_probs=27.0
Q ss_pred ccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcC
Q 021323 223 KHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNG 258 (314)
Q Consensus 223 e~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaG 258 (314)
+-+|=.|-|+|| |..-+.||.|+.|+++ ||.+|
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~~ 35 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEAG 35 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHTT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHCC
Confidence 457889999999 7777899999999875 67764
No 57
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=26.61 E-value=3.3e+02 Score=25.46 Aligned_cols=82 Identities=6% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhh----hhhhcCCCCcEEEecCChhhHH-HhhhcCCCceeEEEeeccchhhHHHH
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYL----ELSKANAEGITVFLEDDSNKIN-AVKRKSNRTQIYKVDYQRPAKDAYKL 188 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dsl----mWaalN~gGrTVFLEEd~~~i~-~~~~~~p~leay~V~Y~T~~~ea~~L 188 (314)
+|..+.+.|.+ +.=++.+||.|.... ++..+++-|..+++.++..... ......++=-.--+.|.-.-++.-++
T Consensus 35 ~l~~~~~~l~~-a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 35 DFTLACEKMFW-CKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 56767776654 222699999995543 5667889999998865554332 22223333346677787777888888
Q ss_pred HHHHhcCC
Q 021323 189 LKHARQNP 196 (314)
Q Consensus 189 L~~ar~~~ 196 (314)
++.+|+..
T Consensus 114 ~~~ak~~g 121 (326)
T PRK10892 114 IPVLKRLH 121 (326)
T ss_pred HHHHHHCC
Confidence 88888754
No 58
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=26.58 E-value=39 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.8
Q ss_pred cCccEEEEeCCCCCCC
Q 021323 224 HKWDVIVVDGPRGDML 239 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~p 239 (314)
-..|+|+||+|.|+.+
T Consensus 107 ~~yD~VIiD~p~~~~~ 122 (251)
T TIGR01969 107 DDTDFLLIDAPAGLER 122 (251)
T ss_pred hhCCEEEEeCCCccCH
Confidence 4689999999999865
No 59
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=25.50 E-value=2.5e+02 Score=25.81 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhccCCccEEEe---ccCc-----hhhhhhhcCC----CC-cEEEecCChhhHHHhhhcCCCceeEEEee
Q 021323 112 KKEFKFLSNLITSKAPCNLLIF---GLDP-----QYLELSKANA----EG-ITVFLEDDSNKINAVKRKSNRTQIYKVDY 178 (314)
Q Consensus 112 ~~Ei~~~~~VL~~raPCNfLVF---GLg~-----dslmWaalN~----gG-rTVFLEEd~~~i~~~~~~~p~leay~V~Y 178 (314)
..|++.++.+|++-.+-.|+++ |-|- ..+.|+-+++ .| .+||..-+.+..+..++..+.++.|++.|
T Consensus 95 ~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~ 174 (222)
T cd03287 95 MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSY 174 (222)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEE
Confidence 4699999999987555555654 3332 3455665543 25 55555666665554444456789999999
Q ss_pred ccc
Q 021323 179 QRP 181 (314)
Q Consensus 179 ~T~ 181 (314)
...
T Consensus 175 ~~~ 177 (222)
T cd03287 175 LES 177 (222)
T ss_pred EEe
Confidence 753
No 60
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=25.28 E-value=1.2e+02 Score=22.94 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=29.0
Q ss_pred cEEEeccCchhh--hhhhcCCCCcEEEecCChhhHHHhhhcC
Q 021323 129 NLLIFGLDPQYL--ELSKANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 129 NfLVFGLg~dsl--mWaalN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
++|-.|-|...+ .|+...+|++-+=+|-|+..++.++++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 467777665444 4444448888888999999998888665
No 61
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=25.25 E-value=43 Score=29.24 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.3
Q ss_pred cCccEEEEeCCCCCCC
Q 021323 224 HKWDVIVVDGPRGDML 239 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~p 239 (314)
-+.|+|+||+|.|...
T Consensus 110 ~~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 110 EEFDYVIIDCPAGIES 125 (261)
T ss_pred HhCCEEEEeCCCCcCH
Confidence 3689999999998754
No 62
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=24.92 E-value=2.6e+02 Score=25.01 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhc-cCCccEEEeccCchhhh--hhhcCCCCcEEEecCChhhHHHhhhcCCCce
Q 021323 112 KKEFKFLSNLITS-KAPCNLLIFGLDPQYLE--LSKANAEGITVFLEDDSNKINAVKRKSNRTQ 172 (314)
Q Consensus 112 ~~Ei~~~~~VL~~-raPCNfLVFGLg~dslm--WaalN~gGrTVFLEEd~~~i~~~~~~~p~le 172 (314)
.+++..+.++|.+ ..+-.+|=+|=|....+ ++....++.-+=+|-++.-++.++++.++++
T Consensus 28 ~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~ 91 (204)
T TIGR03587 28 AAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNIN 91 (204)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCc
Confidence 5677788888877 45667999988765543 3333345666668889999999988766543
No 63
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=24.89 E-value=82 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchh
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQY 139 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~ds 139 (314)
...+......+|++..++.+.|+|+|.|.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 128 (232)
T cd01399 100 LEAECRRYEALIAEAGGIDLQLLGIGENG 128 (232)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 46677788889988789999999999864
No 64
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.89 E-value=4.3e+02 Score=22.42 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhh----hhhcCCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhh
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE----LSKANAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKD 184 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm----WaalN~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~e 184 (314)
.+..+++..+.+.|.+ +. ++.|||.|.-..+ ..-++.-|..++.-++.. .....++=-+--+.|.-.-.+
T Consensus 14 ~l~~~~~~~~~~~l~~-a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~~ 87 (179)
T TIGR03127 14 RIDEEELDKLADKIIK-AK-RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETES 87 (179)
T ss_pred hCCHHHHHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcHH
Confidence 4678899999999876 33 8999999965432 223455576666655532 112222333556677766777
Q ss_pred HHHHHHHHhcCC
Q 021323 185 AYKLLKHARQNP 196 (314)
Q Consensus 185 a~~LL~~ar~~~ 196 (314)
.-++++.+|+..
T Consensus 88 ~i~~~~~ak~~g 99 (179)
T TIGR03127 88 LVTVAKKAKEIG 99 (179)
T ss_pred HHHHHHHHHHCC
Confidence 778888888643
No 65
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=1.4e+02 Score=28.14 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=47.1
Q ss_pred ccEEEeccCch---hhhhhhcC---------CCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHHHhcC
Q 021323 128 CNLLIFGLDPQ---YLELSKAN---------AEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQN 195 (314)
Q Consensus 128 CNfLVFGLg~d---slmWaalN---------~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~ 195 (314)
--|-+||+|-= -++|.-+| .|| ...||.|-.---..-.-.|+-+|+|+-++-.-++||+-.=+.
T Consensus 24 ~q~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG----~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~ 99 (191)
T KOG1635|consen 24 LQFATFGAGCFWGVELAYQRLPGVVRTEVGYAGG----ITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSR 99 (191)
T ss_pred cceeeeeccchhhHHHHHhhcCCeEEEeecccCC----ccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHc
Confidence 56889999832 23454577 245 367888866555666778999999999999999999876543
No 66
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=24.20 E-value=3.3e+02 Score=26.05 Aligned_cols=116 Identities=16% Similarity=0.006 Sum_probs=64.8
Q ss_pred CccEEEeccCchhhhhhhcCCCCcEEEecC--Chhh---HHHhhh---c-----CCCceeEEEee----ccchhhHHHHH
Q 021323 127 PCNLLIFGLDPQYLELSKANAEGITVFLED--DSNK---INAVKR---K-----SNRTQIYKVDY----QRPAKDAYKLL 189 (314)
Q Consensus 127 PCNfLVFGLg~dslmWaalN~gGrTVFLEE--d~~~---i~~~~~---~-----~p~leay~V~Y----~T~~~ea~~LL 189 (314)
-..+||--.+|-+..+.+...|.+.++++- ++.+ ++.+++ + ++....--+.+ .-.+.+.+++.
T Consensus 102 gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~ 181 (387)
T PRK09331 102 GDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVA 181 (387)
T ss_pred CCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHH
Confidence 467888888998888777777888888864 3222 233322 1 23444444433 23445677777
Q ss_pred HHHhcCCCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhh
Q 021323 190 KHARQNPACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTA 251 (314)
Q Consensus 190 ~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTA 251 (314)
+.+|+.. +. .--+.--++..+|-.+-+..=|+++..+=+... +|+|+|-|++.
T Consensus 182 ~la~~~g-~~------livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~--~~~~~G~l~~~ 234 (387)
T PRK09331 182 KVAHEYG-IP------FLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMA--ASAPSGVLATT 234 (387)
T ss_pred HHHHHcC-CE------EEEECCcccCCcCCCHHHcCCCEEEeeCccccc--CCCCEEEEEEC
Confidence 6666532 11 111222233334433333233888877666443 67888877764
No 67
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=24.19 E-value=44 Score=27.67 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.1
Q ss_pred ccEEEEeCCCCCCCC
Q 021323 226 WDVIVVDGPRGDMLE 240 (314)
Q Consensus 226 WDvImVDgP~Gy~pe 240 (314)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 899999999988664
No 68
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=24.11 E-value=38 Score=27.58 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.7
Q ss_pred hhhhccCc-cEEEEeCCCCCCC
Q 021323 219 QEVFKHKW-DVIVVDGPRGDML 239 (314)
Q Consensus 219 ~evYe~~W-DvImVDgP~Gy~p 239 (314)
=.|=|+.| |+|+ +|+||.+
T Consensus 8 VdF~~iGW~~wIi--aP~~y~a 27 (102)
T smart00204 8 VDFKDLGWDDWII--APKGYNA 27 (102)
T ss_pred EEHhhcCCcceEE--cCCceee
Confidence 34568899 7888 8999965
No 69
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.03 E-value=3.7e+02 Score=27.71 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccC-chhhhhhh-cCCC-CcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHH
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLD-PQYLELSK-ANAE-GITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAY 186 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg-~dslmWaa-lN~g-GrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~ 186 (314)
++..=+....+.+....=.|+||.|-| --.+.-+. .++| .+-.+.--+.+....+.+++. +.- .. .+
T Consensus 161 i~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---~~~----~~---l~ 230 (414)
T COG0373 161 ISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---AEA----VA---LE 230 (414)
T ss_pred hHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---Cee----ec---HH
Confidence 344444555555555677899999999 33333333 3455 677788888888888888777 121 22 33
Q ss_pred HHHHHHhcCC---CCCCCCCCCCCccccccccCCchhhhccCccEEEEe--CCCCCCCCCCCcchhhhhhhHhhhcCCCc
Q 021323 187 KLLKHARQNP---ACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVD--GPRGDMLEAPGRMSTIYTASMLARNGETT 261 (314)
Q Consensus 187 ~LL~~ar~~~---~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVD--gP~Gy~peaPGRM~AIyTAavlARaGg~T 261 (314)
+|.+.+.+.. .|...+... +...++.+.+..-+| ++||| -||---|+ . |+-+
T Consensus 231 el~~~l~~~DvVissTsa~~~i------i~~~~ve~a~~~r~~-~livDiavPRdie~~-v---------------~~l~ 287 (414)
T COG0373 231 ELLEALAEADVVISSTSAPHPI------ITREMVERALKIRKR-LLIVDIAVPRDVEPE-V---------------GELP 287 (414)
T ss_pred HHHHhhhhCCEEEEecCCCccc------cCHHHHHHHHhcccC-eEEEEecCCCCCCcc-c---------------cCcC
Confidence 4443333321 155443321 122345555666677 99999 67744331 1 3458
Q ss_pred eEEEecCCh
Q 021323 262 NVVVHDVDR 270 (314)
Q Consensus 262 dVfVHDVdR 270 (314)
||+|+|||.
T Consensus 288 ~v~l~~iDD 296 (414)
T COG0373 288 NVFLYTIDD 296 (414)
T ss_pred CeEEEehhh
Confidence 899999985
No 70
>PHA02518 ParA-like protein; Provisional
Probab=23.61 E-value=52 Score=27.86 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.8
Q ss_pred cCccEEEEeCCCCC
Q 021323 224 HKWDVIVVDGPRGD 237 (314)
Q Consensus 224 ~~WDvImVDgP~Gy 237 (314)
-.+|+|+||.|.|.
T Consensus 75 ~~~d~viiD~p~~~ 88 (211)
T PHA02518 75 SGYDYVVVDGAPQD 88 (211)
T ss_pred ccCCEEEEeCCCCc
Confidence 45899999999875
No 71
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.52 E-value=4e+02 Score=24.55 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhh----hhhcCCCCcEEEecCChhhHHH-hhhcCCCceeEEEeeccchh
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE----LSKANAEGITVFLEDDSNKINA-VKRKSNRTQIYKVDYQRPAK 183 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm----WaalN~gGrTVFLEEd~~~i~~-~~~~~p~leay~V~Y~T~~~ 183 (314)
.+..+++...++.|.+ |. ++.|||.|.-..+ ..-|..=|..+....|...... .....++=-.--+.|.-.-.
T Consensus 119 ~id~~~l~~~~~~i~~-A~-~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~ 196 (285)
T PRK15482 119 LFDYARLQKIIEVISK-AP-FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK 196 (285)
T ss_pred hcCHHHHHHHHHHHHh-CC-eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 3566778888888864 44 5899999965433 2234444777777666554332 23333444467788888888
Q ss_pred hHHHHHHHHhcCC
Q 021323 184 DAYKLLKHARQNP 196 (314)
Q Consensus 184 ea~~LL~~ar~~~ 196 (314)
+.-++++.+|+..
T Consensus 197 ~~~~~~~~a~~~g 209 (285)
T PRK15482 197 EIVLCAEAARKQG 209 (285)
T ss_pred HHHHHHHHHHHCC
Confidence 8888898888754
No 72
>PRK07340 ornithine cyclodeaminase; Validated
Probab=22.95 E-value=3.3e+02 Score=25.92 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchh
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQY 139 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~ds 139 (314)
--|.+==.+..+.|.+.-+.+++|||-|.+.
T Consensus 107 ~RTaA~sala~~~La~~~~~~v~IiGaG~qa 137 (304)
T PRK07340 107 RRTAAVSLLAARTLAPAPPGDLLLIGTGVQA 137 (304)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCcHHH
Confidence 3445555566677888888999999999665
No 73
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.34 E-value=80 Score=31.79 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred cCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCC
Q 021323 224 HKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGE 259 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg 259 (314)
..||||+|=|= . +++-||+.|||+|-
T Consensus 2 ~~~dvvVIGaG----~------~GL~aAa~LA~~G~ 27 (487)
T COG1233 2 PMYDVVVIGAG----L------NGLAAAALLARAGL 27 (487)
T ss_pred CCccEEEECCC----h------hHHHHHHHHHhCCC
Confidence 36899999542 2 78999999999963
No 74
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=22.12 E-value=1.7e+02 Score=27.25 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHhhccC-CccEEEeccCc--hhhhhh---------hcC-CCCcEEEec----CChhhHHHhhhcCCCc
Q 021323 109 ALTKKEFKFLSNLITSKA-PCNLLIFGLDP--QYLELS---------KAN-AEGITVFLE----DDSNKINAVKRKSNRT 171 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~ra-PCNfLVFGLg~--dslmWa---------alN-~gGrTVFLE----Ed~~~i~~~~~~~p~l 171 (314)
..+.++.....+.++... .=+++|++-|. ..-.|. .+. .|-+-|++- ++.+.++.+.+..+.-
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~ 240 (344)
T TIGR02201 161 SYPPADWKAMRALLDEAGVGQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTP 240 (344)
T ss_pred ecCHHHHHHHHHHHHhcCCCCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCC
Confidence 345556555555555421 22567776653 223331 222 233444441 2344677777665555
Q ss_pred eeEEEeeccchhhHHHHHHHHh
Q 021323 172 QIYKVDYQRPAKDAYKLLKHAR 193 (314)
Q Consensus 172 eay~V~Y~T~~~ea~~LL~~ar 193 (314)
..+.+..++.+.|.-.|++.++
T Consensus 241 ~~~~l~g~~sL~el~ali~~a~ 262 (344)
T TIGR02201 241 RVTSLAGKLTLPQLAALIDHAR 262 (344)
T ss_pred cccccCCCCCHHHHHHHHHhCC
Confidence 5677778888999988886544
No 75
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=21.98 E-value=2.9e+02 Score=27.72 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=52.6
Q ss_pred CCccEEEeccCchhhhhhhcCCCC-cEEEecCChhhHHHhhhcC--CCceeEEEeeccchhhHHHHHHHHhcCCCCCCCC
Q 021323 126 APCNLLIFGLDPQYLELSKANAEG-ITVFLEDDSNKINAVKRKS--NRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRS 202 (314)
Q Consensus 126 aPCNfLVFGLg~dslmWaalN~gG-rTVFLEEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea~~LL~~ar~~~~C~p~~ 202 (314)
...++|=.|=|......+++..|. ..+.+|-|+..++.+++.. ++++.-.+ +--..|+.+.|+.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v--~~i~~D~~~~l~~~~~~------- 290 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA--EFVRDDVFKLLRTYRDR------- 290 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE--EEEEccHHHHHHHHHhc-------
Confidence 357899887777777766666554 7999999999999888643 34421111 22234666666433210
Q ss_pred CCCCCccccccccCCchhhhccCccEEEEeCCC
Q 021323 203 ELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPR 235 (314)
Q Consensus 203 ~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~ 235 (314)
+-.+|+|++|-|.
T Consensus 291 --------------------~~~fDlVilDPP~ 303 (396)
T PRK15128 291 --------------------GEKFDVIVMDPPK 303 (396)
T ss_pred --------------------CCCCCEEEECCCC
Confidence 1158999999996
No 76
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=21.49 E-value=55 Score=27.43 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.9
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-+-|+|+||+|.|+.
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 478999999999864
No 77
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.25 E-value=55 Score=23.84 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=35.6
Q ss_pred EEEEeCCCCCCCCCCCcchhhhhhhHhhhcC---CCceEEEecCChh
Q 021323 228 VIVVDGPRGDMLEAPGRMSTIYTASMLARNG---ETTNVVVHDVDRT 271 (314)
Q Consensus 228 vImVDgP~Gy~peaPGRM~AIyTAavlARaG---g~TdVfVHDVdR~ 271 (314)
+|-|+-..|..+|.=-+++.-.|.++..--| ..+.|.++|+++.
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~ 49 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEG 49 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChh
Confidence 4667777788888888888888888777665 7899999999873
No 78
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=21.17 E-value=61 Score=29.03 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=29.7
Q ss_pred CccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc--CCCceEEEecCChhHH
Q 021323 225 KWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN--GETTNVVVHDVDRTIE 273 (314)
Q Consensus 225 ~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa--Gg~TdVfVHDVdR~VE 273 (314)
+.|||+||+.. ..-=+=|+.+.+.++++|+ |-.+|=.|-|++.-.|
T Consensus 57 pGdVlVid~~g---~~~~A~~G~~la~~a~~~G~aGvVidG~vRD~~~i~~ 104 (161)
T TIGR02998 57 TGRVLVIDGGG---STRRALIDAELAQLAANNGWEGIVVYGAVRQVDALEE 104 (161)
T ss_pred CCeEEEEECCC---CCceEeeCHHHHHHHHHCCCeEEEEeecccCHHHHhh
Confidence 47999999863 2223446888888888887 5455555555544333
No 79
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=20.78 E-value=67 Score=26.71 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=20.9
Q ss_pred cCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhc-CCCc
Q 021323 224 HKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARN-GETT 261 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARa-Gg~T 261 (314)
.+-|+|+||||.|.... |...++-+-+|+. |..+
T Consensus 98 ~~~D~viid~~g~~~~~----~~~~~~~~dl~~~~~~~v 132 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVP----ITEEYTTADLIKLLQLPV 132 (166)
T ss_pred hcCCEEEEEcCCccccC----CCCCCcHHHHHHHhCCCE
Confidence 46799999999886542 2234444445555 5333
No 80
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=20.45 E-value=1.2e+02 Score=28.27 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=27.6
Q ss_pred cCCccEEEeccCchhhhhhhcCCC-C-cEEEecCChhhH
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAE-G-ITVFLEDDSNKI 161 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~g-G-rTVFLEEd~~~i 161 (314)
..+..++|||=||+....+.+-+. | +.+-+|+++++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~ 136 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF 136 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc
Confidence 466999999999999998877653 4 444556666654
No 81
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.35 E-value=60 Score=28.36 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.6
Q ss_pred ccEEEEeCCCCCCC
Q 021323 226 WDVIVVDGPRGDML 239 (314)
Q Consensus 226 WDvImVDgP~Gy~p 239 (314)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 59999999997643
No 82
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=20.35 E-value=4.2e+02 Score=23.49 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=36.0
Q ss_pred cCCchhhhccCccEEEEeCCCCCCCC-CCCcchhhhh-hhHhhhcCCCceEEEecCChhHHHHHh-hhhcccccc
Q 021323 215 KDLPQEVFKHKWDVIVVDGPRGDMLE-APGRMSTIYT-ASMLARNGETTNVVVHDVDRTIEKWFS-WEFLCEENL 286 (314)
Q Consensus 215 ~~LP~evYe~~WDvImVDgP~Gy~pe-aPGRM~AIyT-AavlARaGg~TdVfVHDVdR~VEk~fs-~EFLC~~nL 286 (314)
+.+.+.+-+.+=|+|+||.|+..... .+..|..+.. .--+++.| .|=+++++-....++... .+|++++-.
T Consensus 110 ~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g-~tvllt~~~~~~~~~~~~~~~~l~DgvI 183 (234)
T PRK06067 110 ELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLG-KTILITLHPYAFSEELLSRIRSICDVYL 183 (234)
T ss_pred HHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence 33445555567789999999965321 1222222211 11112334 455777654444443333 378887543
No 83
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=20.31 E-value=3.3e+02 Score=26.70 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCccEEEe--ccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcC
Q 021323 126 APCNLLIF--GLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 126 aPCNfLVF--GLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
...++|=. |-|.-++..+ ..|.+.+.+|-|+.-++.++++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la--~~~~~v~~vE~~~~av~~a~~N~ 275 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCA--GPDTQLTGIEIESEAIACAQQSA 275 (374)
T ss_pred CCCEEEEccCCccHHHHHHh--hcCCeEEEEECCHHHHHHHHHHH
Confidence 45667766 5555555554 45678889999999998887644
No 84
>COG3722 MtlR Transcriptional regulator [Transcription]
Probab=20.27 E-value=25 Score=32.38 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.9
Q ss_pred EEeccC-----------chhhhhhhcCCCCcEEEecCChhh
Q 021323 131 LIFGLD-----------PQYLELSKANAEGITVFLEDDSNK 160 (314)
Q Consensus 131 LVFGLg-----------~dslmWaalN~gGrTVFLEEd~~~ 160 (314)
|||||| |-..+|.-|||.|.+.=..||.-|
T Consensus 75 liygLGvi~~~~y~Diehl~~lre~Ln~d~~ey~FtDd~il 115 (174)
T COG3722 75 LIYGLGVIDRWEYEDIEHLMALREELNHDGEEYGFTDDEIL 115 (174)
T ss_pred HHHHhccchHHHHhhHHHHHHHHHHhcccccccCcccHHHH
Confidence 469999 667899999999999888888877
No 85
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=20.04 E-value=1.4e+02 Score=26.65 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=35.3
Q ss_pred CcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHHHhc
Q 021323 149 GITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQ 194 (314)
Q Consensus 149 GrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~ 194 (314)
.+++|+||++.-+..+++. ++.+-.+.|--.+.+...+|+..|.
T Consensus 131 ~e~l~VgDs~~di~aA~~a--Gi~~i~v~~g~~~~~~~~~~~~~~~ 174 (174)
T TIGR01685 131 AQILFFDDRTDNVREVWGY--GVTSCYCPSGMDKGTFKKILEMWRS 174 (174)
T ss_pred HHeEEEcChhHhHHHHHHh--CCEEEEcCCCccHHHHHHHHHHhcC
Confidence 7899999999998887654 5567777888888888888887763
Done!