Query 021323
Match_columns 314
No_of_seqs 92 out of 94
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvo_A Methyltransferase-like 96.5 0.004 1.4E-07 54.9 6.0 165 107-301 13-185 (202)
2 3c6k_A Spermine synthase; sper 91.7 0.16 5.5E-06 49.1 4.8 150 125-301 204-377 (381)
3 2qfm_A Spermine synthase; sper 91.1 0.56 1.9E-05 45.0 7.8 146 125-301 187-360 (364)
4 3gjy_A Spermidine synthase; AP 84.8 1.2 4.1E-05 41.5 5.5 80 127-237 90-171 (317)
5 3o4f_A Spermidine synthase; am 83.2 2.9 9.8E-05 38.9 7.3 57 114-170 71-129 (294)
6 3adn_A Spermidine synthase; am 76.4 4.3 0.00015 36.6 6.0 50 120-169 77-128 (294)
7 1mjf_A Spermidine synthase; sp 70.4 20 0.00068 31.5 8.7 48 121-168 70-118 (281)
8 3e05_A Precorrin-6Y C5,15-meth 59.0 13 0.00046 29.9 5.0 61 107-167 20-83 (204)
9 3hm2_A Precorrin-6Y C5,15-meth 56.1 22 0.00076 27.4 5.6 61 107-167 5-68 (178)
10 2cmg_A Spermidine synthase; tr 53.0 26 0.00088 30.9 6.1 50 121-170 67-116 (262)
11 3pfg_A N-methyltransferase; N, 48.3 50 0.0017 27.5 6.9 60 112-171 34-95 (263)
12 3mb5_A SAM-dependent methyltra 47.6 36 0.0012 28.2 5.9 59 109-167 76-137 (255)
13 3i9f_A Putative type 11 methyl 47.3 14 0.00048 28.6 3.2 52 118-169 9-60 (170)
14 3cgg_A SAM-dependent methyltra 45.7 54 0.0018 25.2 6.3 46 125-170 45-90 (195)
15 3sho_A Transcriptional regulat 43.1 1.2E+02 0.0043 24.0 8.9 85 109-195 23-113 (187)
16 1vl5_A Unknown conserved prote 42.9 27 0.00091 29.1 4.4 59 109-167 20-78 (260)
17 3e8s_A Putative SAM dependent 41.8 61 0.0021 25.6 6.2 52 116-167 42-93 (227)
18 2avd_A Catechol-O-methyltransf 41.8 62 0.0021 26.2 6.4 59 109-167 52-113 (229)
19 1u94_A RECA protein, recombina 41.3 56 0.0019 30.4 6.7 61 224-284 140-225 (356)
20 1iy9_A Spermidine synthase; ro 40.4 80 0.0027 27.6 7.3 48 122-169 71-120 (275)
21 2pwy_A TRNA (adenine-N(1)-)-me 40.2 46 0.0016 27.4 5.4 59 109-167 79-140 (258)
22 3hnr_A Probable methyltransfer 39.9 61 0.0021 25.9 6.0 56 114-169 33-88 (220)
23 2i7c_A Spermidine synthase; tr 39.8 59 0.002 28.5 6.4 49 122-170 74-124 (283)
24 3tr6_A O-methyltransferase; ce 38.6 66 0.0023 26.0 6.0 60 109-168 47-109 (225)
25 2yvl_A TRMI protein, hypotheti 37.8 54 0.0018 26.8 5.4 57 111-167 76-132 (248)
26 3h2b_A SAM-dependent methyltra 37.2 62 0.0021 25.6 5.6 56 114-170 30-85 (203)
27 2hnk_A SAM-dependent O-methylt 37.2 69 0.0023 26.6 6.1 60 109-168 43-105 (239)
28 1l3i_A Precorrin-6Y methyltran 36.8 92 0.0032 23.8 6.4 57 111-167 17-74 (192)
29 1inl_A Spermidine synthase; be 36.3 1E+02 0.0036 27.2 7.5 48 122-169 86-135 (296)
30 3cbg_A O-methyltransferase; cy 36.0 72 0.0025 26.6 6.0 60 109-168 55-117 (232)
31 2yxd_A Probable cobalt-precorr 35.8 1.3E+02 0.0045 22.8 7.1 57 111-167 20-76 (183)
32 3bwc_A Spermidine synthase; SA 35.3 1E+02 0.0034 27.3 7.2 48 122-169 91-140 (304)
33 3lte_A Response regulator; str 35.2 38 0.0013 24.3 3.7 42 147-189 5-46 (132)
34 3kjh_A CO dehydrogenase/acetyl 34.3 19 0.00066 29.2 2.1 17 223-239 129-145 (254)
35 2b2c_A Spermidine synthase; be 34.1 80 0.0027 28.6 6.4 58 113-170 95-154 (314)
36 1byi_A Dethiobiotin synthase; 34.0 18 0.00062 29.5 2.0 15 224-238 107-121 (224)
37 1o54_A SAM-dependent O-methylt 33.7 63 0.0022 27.5 5.4 59 109-167 95-156 (277)
38 1g3q_A MIND ATPase, cell divis 33.5 18 0.00061 29.7 1.8 15 224-238 110-124 (237)
39 1p91_A Ribosomal RNA large sub 33.4 88 0.003 26.1 6.2 54 118-171 74-132 (269)
40 3bxo_A N,N-dimethyltransferase 33.3 77 0.0026 25.5 5.6 59 113-171 25-85 (239)
41 1uir_A Polyamine aminopropyltr 32.9 71 0.0024 28.5 5.8 50 120-169 71-122 (314)
42 1vbf_A 231AA long hypothetical 32.2 77 0.0026 25.7 5.5 60 111-170 55-114 (231)
43 3jwg_A HEN1, methyltransferase 31.9 90 0.0031 25.1 5.8 61 109-169 12-74 (219)
44 3m33_A Uncharacterized protein 31.6 1.1E+02 0.0039 25.0 6.5 50 125-174 47-96 (226)
45 3u81_A Catechol O-methyltransf 31.3 97 0.0033 25.3 6.0 59 109-167 41-102 (221)
46 2p35_A Trans-aconitate 2-methy 31.3 67 0.0023 26.3 5.0 51 122-172 29-81 (259)
47 2pt6_A Spermidine synthase; tr 31.1 96 0.0033 28.0 6.4 50 121-170 111-162 (321)
48 4gcm_A TRXR, thioredoxin reduc 31.1 31 0.0011 29.4 3.0 32 223-264 4-35 (312)
49 1dus_A MJ0882; hypothetical pr 30.9 97 0.0033 23.7 5.6 55 113-167 39-93 (194)
50 3jwh_A HEN1; methyltransferase 30.7 83 0.0028 25.3 5.4 60 109-168 12-73 (217)
51 2ph1_A Nucleotide-binding prot 30.7 22 0.00077 30.2 2.1 15 224-238 127-141 (262)
52 3njr_A Precorrin-6Y methylase; 30.6 82 0.0028 25.9 5.4 61 107-167 35-96 (204)
53 1i9g_A Hypothetical protein RV 30.5 80 0.0027 26.5 5.5 58 110-167 83-143 (280)
54 3duw_A OMT, O-methyltransferas 30.5 1.1E+02 0.0036 24.8 6.0 57 111-167 43-102 (223)
55 3ccf_A Cyclopropane-fatty-acyl 29.7 95 0.0033 26.2 5.8 54 118-171 49-102 (279)
56 2gpy_A O-methyltransferase; st 28.7 1.2E+02 0.0042 24.7 6.2 58 110-167 38-97 (233)
57 4dzz_A Plasmid partitioning pr 28.6 25 0.00084 28.0 1.9 14 225-238 75-88 (206)
58 3c3p_A Methyltransferase; NP_9 28.0 1.4E+02 0.0048 24.0 6.3 59 110-168 40-101 (210)
59 2p7i_A Hypothetical protein; p 27.8 2.3E+02 0.0077 22.5 7.5 56 114-169 29-85 (250)
60 3c3y_A Pfomt, O-methyltransfer 27.8 96 0.0033 26.1 5.5 59 110-168 54-115 (237)
61 1y8c_A S-adenosylmethionine-de 27.0 1.4E+02 0.0048 23.9 6.1 57 111-167 20-78 (246)
62 3ntv_A MW1564 protein; rossman 26.5 1.4E+02 0.0046 24.8 6.1 58 110-167 55-114 (232)
63 3bkw_A MLL3908 protein, S-aden 26.0 95 0.0033 25.0 5.0 56 114-169 31-87 (243)
64 1wzn_A SAM-dependent methyltra 25.9 1.2E+02 0.0041 24.8 5.6 57 111-167 23-82 (252)
65 1hyq_A MIND, cell division inh 25.8 30 0.001 29.0 1.9 15 224-238 109-123 (263)
66 3lbf_A Protein-L-isoaspartate 25.7 65 0.0022 25.7 3.9 57 111-167 62-118 (210)
67 3hv2_A Response regulator/HD d 25.2 1.4E+02 0.0048 22.2 5.5 42 148-190 14-55 (153)
68 1rjd_A PPM1P, carboxy methyl t 25.0 45 0.0016 30.7 3.2 40 121-160 92-132 (334)
69 3hh2_A Growth/differentiation 24.6 9.5 0.00032 30.5 -1.3 37 196-239 4-40 (109)
70 3ou2_A SAM-dependent methyltra 24.5 1.7E+02 0.0058 23.0 6.1 53 115-167 34-87 (218)
71 2o07_A Spermidine synthase; st 24.4 1.1E+02 0.0039 27.3 5.6 47 123-169 92-140 (304)
72 3tfw_A Putative O-methyltransf 24.4 1.4E+02 0.0049 25.1 6.0 58 111-168 48-108 (248)
73 2yxe_A Protein-L-isoaspartate 24.4 98 0.0033 24.8 4.7 57 111-167 62-121 (215)
74 1wcv_1 SOJ, segregation protei 23.6 34 0.0012 28.9 1.9 15 224-238 110-124 (257)
75 2woo_A ATPase GET3; tail-ancho 23.5 33 0.0011 30.9 1.9 33 127-159 18-58 (329)
76 3q9l_A Septum site-determining 23.4 34 0.0012 28.3 1.9 14 225-238 113-126 (260)
77 2oze_A ORF delta'; para, walke 23.1 29 0.001 29.8 1.4 50 111-160 19-77 (298)
78 1sui_A Caffeoyl-COA O-methyltr 23.0 1.4E+02 0.0046 25.5 5.6 58 111-168 64-124 (247)
79 1jy4_A B4dimer; eight-stranded 23.0 27 0.00094 23.4 0.9 8 293-300 21-28 (35)
80 3ea0_A ATPase, para family; al 23.0 24 0.00083 28.9 0.8 15 225-239 118-132 (245)
81 2xhz_A KDSD, YRBH, arabinose 5 22.7 2.8E+02 0.0097 21.8 8.7 84 110-195 34-122 (183)
82 3oz2_A Digeranylgeranylglycero 22.6 47 0.0016 28.4 2.6 30 226-267 5-34 (397)
83 2xvm_A Tellurite resistance pr 22.3 1.3E+02 0.0044 23.3 4.9 51 117-167 23-73 (199)
84 2xj4_A MIPZ; replication, cell 22.3 31 0.0011 29.9 1.5 14 224-237 102-115 (286)
85 3q87_B N6 adenine specific DNA 22.3 2.9E+02 0.0098 21.7 8.0 50 113-163 8-59 (170)
86 3k9g_A PF-32 protein; ssgcid, 22.0 33 0.0011 28.9 1.5 15 224-238 143-157 (267)
87 2igt_A SAM dependent methyltra 22.0 1.3E+02 0.0046 27.2 5.7 55 114-168 140-195 (332)
88 3dtn_A Putative methyltransfer 21.9 1.2E+02 0.0042 24.4 4.9 58 113-170 30-90 (234)
89 2kw5_A SLR1183 protein; struct 21.8 1.3E+02 0.0044 23.7 4.9 48 121-168 24-71 (202)
90 3dr5_A Putative O-methyltransf 21.7 2.3E+02 0.0078 23.7 6.7 59 110-168 37-101 (221)
91 3grc_A Sensor protein, kinase; 21.7 99 0.0034 22.4 3.9 41 148-189 6-46 (140)
92 3ug7_A Arsenical pump-driving 21.5 40 0.0014 30.7 2.1 20 140-159 46-65 (349)
93 3cwq_A Para family chromosome 21.5 30 0.001 28.7 1.2 16 223-238 65-81 (209)
94 2woj_A ATPase GET3; tail-ancho 21.3 30 0.001 31.8 1.2 32 128-159 18-59 (354)
95 3ez9_A Para; DNA binding, wing 21.2 33 0.0011 31.4 1.4 51 109-159 86-157 (403)
96 3io3_A DEHA2D07832P; chaperone 20.6 35 0.0012 31.6 1.5 34 126-159 16-59 (348)
97 3ez2_A Plasmid partition prote 20.4 35 0.0012 31.1 1.4 52 108-159 82-154 (398)
98 2e7j_A SEP-tRNA:Cys-tRNA synth 20.3 2.7E+02 0.0094 23.6 6.9 10 149-158 93-102 (371)
No 1
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.46 E-value=0.004 Score=54.86 Aligned_cols=165 Identities=17% Similarity=0.118 Sum_probs=94.7
Q ss_pred CCcCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCC--Cc-eeEEEeeccchh
Q 021323 107 ASALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN--RT-QIYKVDYQRPAK 183 (314)
Q Consensus 107 ~~~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p--~l-eay~V~Y~T~~~ 183 (314)
...++.++.+.+...++ .+=|.|-+|-|. |.+|.|...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .
T Consensus 13 ~~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--g 87 (202)
T 3cvo_A 13 ELTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--T 87 (202)
T ss_dssp CCCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--C
T ss_pred CccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--e
Confidence 35789999999987554 577999999996 6666665558999999999999998886332 11 122333331 1
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCccccccccCCchhhhc----cCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCC
Q 021323 184 DAYKLLKHARQNPACAPRSELLPSSKCKLTRKDLPQEVFK----HKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGE 259 (314)
Q Consensus 184 ea~~LL~~ar~~~~C~p~~~~l~~S~CkLAL~~LP~evYe----~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg 259 (314)
+|.+.+ .-..|.... . .-.+..++.++.+ -..|+|+|||..+ ....+-+--+-|-||
T Consensus 88 da~~~~------~wg~p~~~~---~--~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG 148 (202)
T 3cvo_A 88 DIGPTG------DWGHPVSDA---K--WRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPV 148 (202)
T ss_dssp CCSSBC------GGGCBSSST---T--GGGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCE
T ss_pred Cchhhh------cccccccch---h--hhhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCe
Confidence 110000 012221110 0 0112222222222 4599999999652 233444333334454
Q ss_pred CceEEEecC-ChhHHHHHhhhhccccccccccCceeceEecCC
Q 021323 260 TTNVVVHDV-DRTIEKWFSWEFLCEENLVSSKGKLWNFRLTDQ 301 (314)
Q Consensus 260 ~TdVfVHDV-dR~VEk~fs~EFLC~~nLv~~~GrLwHF~Ip~~ 301 (314)
=|+++|| .|.-+.. ..+|| .+++..||+-.|+|.+.
T Consensus 149 --~Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~ 185 (202)
T 3cvo_A 149 --TLLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ 185 (202)
T ss_dssp --EEEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred --EEEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence 3577885 5532221 13343 35678899999999765
No 2
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=91.67 E-value=0.16 Score=49.08 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=91.3
Q ss_pred cCCccEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcCCCcee--EE----EeeccchhhHHHHHHHHhcCCC
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKSNRTQI--YK----VDYQRPAKDAYKLLKHARQNPA 197 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~p~lea--y~----V~Y~T~~~ea~~LL~~ar~~~~ 197 (314)
..|=|.||.|+|-...+-..+.|. .+..-+|=|+.-|+-.++-+|.+.. ++ =+.+--+.||.+-|+.+.++
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-- 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-- 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence 346799999999888888777765 5677899999999998887775422 11 11233356788888655431
Q ss_pred CCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcc-hhhhhhhHhh---hc---CCC-----ceEEE
Q 021323 198 CAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRM-STIYTASMLA---RN---GET-----TNVVV 265 (314)
Q Consensus 198 C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM-~AIyTAavlA---Ra---Gg~-----TdVfV 265 (314)
..++|||++|.+.+.....|-.. ...||...+. |. ||. .-++.
T Consensus 282 -------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~ 336 (381)
T 3c6k_A 282 -------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL 336 (381)
T ss_dssp -------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred -------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 12599999998876555555444 4567765432 22 321 12234
Q ss_pred ecCChhHHHHHhhhhcccc---cc--ccccCceeceEecCC
Q 021323 266 HDVDRTIEKWFSWEFLCEE---NL--VSSKGKLWNFRLTDQ 301 (314)
Q Consensus 266 HDVdR~VEk~fs~EFLC~~---nL--v~~~GrLwHF~Ip~~ 301 (314)
|+..+.+++.+.+.|---+ +. |-+-+..|=|.+.+.
T Consensus 337 ~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 337 TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence 6666777888777652111 11 223345788887664
No 3
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=91.06 E-value=0.56 Score=44.96 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=85.0
Q ss_pred cCCccEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcCCCcee--EE----EeeccchhhHHHHHHHHhcCCC
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKSNRTQI--YK----VDYQRPAKDAYKLLKHARQNPA 197 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~p~lea--y~----V~Y~T~~~ea~~LL~~ar~~~~ 197 (314)
..|-+.||.|.|-..+.-..+.|+ .+-+.+|=|+.-++.+++.+|.+.. ++ -+.+-...||.+.|+.+.+.
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~-- 264 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-- 264 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred CCCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc--
Confidence 358899999999888888778776 5678999999999999998886532 11 02334457788877654211
Q ss_pred CCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCCCCCCcchhhhhhhHh-------hhc---CC--CceE--
Q 021323 198 CAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDMLEAPGRMSTIYTASML-------ARN---GE--TTNV-- 263 (314)
Q Consensus 198 C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~AIyTAavl-------ARa---Gg--~TdV-- 263 (314)
+-.+|||++|.|.+-.-.+|++ .||.... .|. || .++.
T Consensus 265 -------------------------~~~fDvII~D~~d~P~~~~p~~---L~t~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 265 -------------------------GREFDYVINDLTAVPISTSPEE---DSTWEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp -------------------------TCCEEEEEEECCSSCCCCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred -------------------------CCCceEEEECCCCcccCcCchh---hhHHHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 1258999999976212224544 3443222 222 32 1111
Q ss_pred -EEecCChhHHHHHhhhhcccccc------ccccCceeceEecCC
Q 021323 264 -VVHDVDRTIEKWFSWEFLCEENL------VSSKGKLWNFRLTDQ 301 (314)
Q Consensus 264 -fVHDVdR~VEk~fs~EFLC~~nL------v~~~GrLwHF~Ip~~ 301 (314)
++.++-+..|+.+..-| |.-.. |-+-+.+|=|.+-..
T Consensus 317 ~~~~e~~~~~~~~l~~~F-~~v~~~~~~~~vPsy~~~w~f~~~~k 360 (364)
T 2qfm_A 317 VNLTEALSLYEEQLGRLY-CPVEFSKEIVCVPSYLELWVFYTVWK 360 (364)
T ss_dssp TTCHHHHHHHHHHHTTSS-SCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhC-CceEEeeEeeecCCchhheEeEEeec
Confidence 12334456677666655 32222 223344888877543
No 4
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=84.78 E-value=1.2 Score=41.53 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=53.4
Q ss_pred CccEEEeccCchhhhhhhc--CCCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHHHHhcCCCCCCCCCC
Q 021323 127 PCNLLIFGLDPQYLELSKA--NAEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLKHARQNPACAPRSEL 204 (314)
Q Consensus 127 PCNfLVFGLg~dslmWaal--N~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~ar~~~~C~p~~~~ 204 (314)
|.++|+.|.|-.++.-..+ .++.+.+-+|=|+.-++.+++.++....-.|+ -...|+.+.++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~--v~~~Da~~~l~~------------- 154 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVK--IRVDDARMVAES------------- 154 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEE--EEESCHHHHHHT-------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceE--EEECcHHHHHhh-------------
Confidence 5599999999776654444 45778889999999999999887642111111 123555555531
Q ss_pred CCCccccccccCCchhhhccCccEEEEeCCCCC
Q 021323 205 LPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGD 237 (314)
Q Consensus 205 l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy 237 (314)
++ +-.+|+|++|+..++
T Consensus 155 ------------~~----~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 155 ------------FT----PASRDVIIRDVFAGA 171 (317)
T ss_dssp ------------CC----TTCEEEEEECCSTTS
T ss_pred ------------cc----CCCCCEEEECCCCcc
Confidence 11 236899999987765
No 5
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=83.18 E-value=2.9 Score=38.85 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCCC
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p~ 170 (314)
|.-+-.-++....|=|.||.|+|-...+-..+.|- -+...+|=|+.-|+-.++-+|.
T Consensus 71 E~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~ 129 (294)
T 3o4f_A 71 EMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN 129 (294)
T ss_dssp HHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred HHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc
Confidence 33333445566889999999999998888888774 4678899999999888776553
No 6
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=76.43 E-value=4.3 Score=36.56 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=38.2
Q ss_pred HHhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCC
Q 021323 120 NLITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 120 ~VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p 169 (314)
..+....|-++|+.|.|-..+.-..+.+ .++-+.+|=|+.-++.+++..+
T Consensus 77 ~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~ 128 (294)
T 3adn_A 77 PLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCH
T ss_pred HHhcCCCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhh
Confidence 3445567999999999988776655555 3567789999999998887654
No 7
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=70.40 E-value=20 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=38.0
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCCC-CcEEEecCChhhHHHhhhcC
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANAE-GITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~g-GrTVFLEEd~~~i~~~~~~~ 168 (314)
.+....|.++|+.|.|...+.-..+.++ ++-+.+|=|+.-++.+++..
T Consensus 70 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~ 118 (281)
T 1mjf_A 70 MLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI 118 (281)
T ss_dssp HHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred HhhCCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3445678999999999877666665554 68899999999999988765
No 8
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=59.00 E-value=13 Score=29.89 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=44.3
Q ss_pred CCcCCHHHH-HHHHHHhhccCCccEEEeccCch--hhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 107 ASALTKKEF-KFLSNLITSKAPCNLLIFGLDPQ--YLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 107 ~~~~t~~Ei-~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.++++.+|+ ..+...+.-+...++|-+|-|.. ++.++...++++-+-+|-++..++.++++
T Consensus 20 ~g~~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 20 KKLITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp TTTSCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 355688888 55666666677889999988754 44555555558888889899888887764
No 9
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=56.13 E-value=22 Score=27.37 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCcCCHHHHHH-HHHHhhccCCccEEEeccCchhhhh--hhcCCCCcEEEecCChhhHHHhhhc
Q 021323 107 ASALTKKEFKF-LSNLITSKAPCNLLIFGLDPQYLEL--SKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 107 ~~~~t~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW--aalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.+++|..|+.. +.+.+.-+..-++|.+|-|...+.. +...++++.+-+|=++..++.++++
T Consensus 5 ~g~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~ 68 (178)
T 3hm2_A 5 DGQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN 68 (178)
T ss_dssp -CCSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 46778888764 3344444667799999888665544 3334467777888888888777664
No 10
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=52.97 E-value=26 Score=30.90 Aligned_cols=50 Identities=14% Similarity=-0.025 Sum_probs=39.9
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCC
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
.+....|-+.|+.|.|-..+.-..+.++++-+.+|=|+..++.+++..+.
T Consensus 67 ~~~~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 67 GCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp HTTSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT
T ss_pred hhcCCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh
Confidence 34456788999999998877766666667888999999999999887654
No 11
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=48.31 E-value=50 Score=27.50 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcc--CCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCc
Q 021323 112 KKEFKFLSNLITSK--APCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 112 ~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~l 171 (314)
.++...+.+.|.+. .+.++|=+|-|...+.......|.+.+-+|=++..++.++++.+++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 95 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA 95 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC
Confidence 35556667777663 4589999999887777777777888889999999999988876544
No 12
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=47.55 E-value=36 Score=28.22 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhc---CCCCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKA---NAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaal---N~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.+..+++..+...+.-+...++|.+|-|...+.-... +++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 137 (255)
T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137 (255)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence 3578888888888888888999999888655543333 4578888888888888777654
No 13
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=47.30 E-value=14 Score=28.57 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=37.6
Q ss_pred HHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCC
Q 021323 118 LSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 118 ~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p 169 (314)
+.+.+.....-++|-+|-|...........+++.+-+|-++..++.++++.+
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 60 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD 60 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCT
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCC
Confidence 3444555666799999988777666666666677788888888888877733
No 14
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=45.70 E-value=54 Score=25.19 Aligned_cols=46 Identities=11% Similarity=-0.063 Sum_probs=35.9
Q ss_pred cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCC
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
+.+.++|-+|-|...........|.+.+-+|-++..++.++++.++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~ 90 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE 90 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC
Confidence 4677999998887666555555678888899999999988887754
No 15
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.10 E-value=1.2e+02 Score=24.03 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhhhh----hcCCCCcEE-Eec-CChhhHHHhhhcCCCceeEEEeeccch
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELS----KANAEGITV-FLE-DDSNKINAVKRKSNRTQIYKVDYQRPA 182 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWa----alN~gGrTV-FLE-Ed~~~i~~~~~~~p~leay~V~Y~T~~ 182 (314)
.+..+++..+.+.|.+. . ++.|||.|.....=. .++.-|..+ ++. +...+...+....++--.--+.|.-.-
T Consensus 23 ~l~~~~l~~~~~~i~~a-~-~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRA-D-HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp TCCHHHHHHHHHHHHHC-S-EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC
T ss_pred hCCHHHHHHHHHHHHhC-C-EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC
Confidence 35678888888888763 2 999999996543221 223345555 455 344555555555566566667787777
Q ss_pred hhHHHHHHHHhcC
Q 021323 183 KDAYKLLKHARQN 195 (314)
Q Consensus 183 ~ea~~LL~~ar~~ 195 (314)
.+.-++++.+|+.
T Consensus 101 ~~~~~~~~~ak~~ 113 (187)
T 3sho_A 101 RDTVAALAGAAER 113 (187)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 8888888888874
No 16
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=42.94 E-value=27 Score=29.13 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+.+.+++..+.+.+..+.+-++|-+|-|...+.......+++.+-+|-++..++.++++
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 78 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 78 (260)
T ss_dssp ---CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 34556778888888888889999999987777666666678888999999998887764
No 17
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=41.77 E-value=61 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 116 KFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 116 ~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
..+.+.+..+.+.++|=+|-|...........|.+.+-+|-++..++.++++
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence 4456666667889999999988777766666788888899999999988887
No 18
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=41.76 E-value=62 Score=26.24 Aligned_cols=59 Identities=22% Similarity=0.137 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcCC-CCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKANA-EGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~-gGrTVFLEEd~~~i~~~~~~ 167 (314)
..+..+...+..+++...+.++|-+|-|.. ++.++...+ +++-+-+|-++..++.+++.
T Consensus 52 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 113 (229)
T 2avd_A 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL 113 (229)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 446666777777777788899999988644 444444333 68888999999998888764
No 19
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=41.32 E-value=56 Score=30.36 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=29.9
Q ss_pred cCccEEEEeCCCCCCC--CCCCcchh------------hh-hhhHhhhcCCCceEEEecCChhHHHHH----------hh
Q 021323 224 HKWDVIVVDGPRGDML--EAPGRMST------------IY-TASMLARNGETTNVVVHDVDRTIEKWF----------SW 278 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~p--eaPGRM~A------------Iy-TAavlARaGg~TdVfVHDVdR~VEk~f----------s~ 278 (314)
.+-|+|+||.+....+ +-.|+|+. +. .-.-+|+.-+.|=|+++.+.+.++..| ++
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l 219 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 219 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHH
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcce
Confidence 3568999999998875 22344432 11 111123333678899999999999876 45
Q ss_pred hhcccc
Q 021323 279 EFLCEE 284 (314)
Q Consensus 279 EFLC~~ 284 (314)
+|.++-
T Consensus 220 ~~~adv 225 (356)
T 1u94_A 220 KFYASV 225 (356)
T ss_dssp HHHCSE
T ss_pred eeeccE
Confidence 666653
No 20
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=40.40 E-value=80 Score=27.64 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=38.8
Q ss_pred hhccCCccEEEeccCchhhhhhhcCC-C-CcEEEecCChhhHHHhhhcCC
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKANA-E-GITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN~-g-GrTVFLEEd~~~i~~~~~~~p 169 (314)
+....|-++|+.|.|-..+.-..+.+ + ++-+.+|-|+.-++.+++..+
T Consensus 71 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~ 120 (275)
T 1iy9_A 71 FTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (275)
T ss_dssp HHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred hhCCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence 34567899999999988777666666 3 688999999999999988664
No 21
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=40.16 E-value=46 Score=27.36 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhh--hhhc-CCCCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE--LSKA-NAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm--Waal-N~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.+..+++..+...+.-+...++|.+|-|...+. ++.. +++++-+-+|-++..++.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 140 (258)
T 2pwy_A 79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN 140 (258)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 456778888888777778889999988765443 3333 4577888888888888877765
No 22
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=39.89 E-value=61 Score=25.91 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=41.9
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCC
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p 169 (314)
.+..+.+.+..+.+.++|-+|-|...+.......|++.+-+|-++..++.++++.+
T Consensus 33 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 88 (220)
T 3hnr_A 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP 88 (220)
T ss_dssp THHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC
Confidence 34455555666688899999988776665555567888889999998888887655
No 23
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=39.76 E-value=59 Score=28.53 Aligned_cols=49 Identities=20% Similarity=0.064 Sum_probs=39.3
Q ss_pred hhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCCC
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+.
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~ 124 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence 44567899999999987776666655 47889999999999999887664
No 24
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.59 E-value=66 Score=25.99 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCc--hhhhhhhcCC-CCcEEEecCChhhHHHhhhcC
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDP--QYLELSKANA-EGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmWaalN~-gGrTVFLEEd~~~i~~~~~~~ 168 (314)
+.+......+..++....+.++|-.|-|. .++.++...+ +++-+-+|-++..++.++++.
T Consensus 47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 109 (225)
T 3tr6_A 47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW 109 (225)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34566667777777777889999998864 4444444333 788889999999998887653
No 25
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=37.84 E-value=54 Score=26.78 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
...++..+.+.+.-+..-++|.+|-|...+.......+++-+.+|-++..++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred cchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 466677676666666778999998876544433333377888888888888777654
No 26
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=37.24 E-value=62 Score=25.61 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=41.2
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCC
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
+...+...+... +-++|-+|-|...........|.+.+-+|-++..++.++++.++
T Consensus 30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 85 (203)
T 3h2b_A 30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS 85 (203)
T ss_dssp THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCC
Confidence 344555555544 88999999887666655555677888899999999988887554
No 27
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=37.16 E-value=69 Score=26.56 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccC--chhhhhhhcCC-CCcEEEecCChhhHHHhhhcC
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLD--PQYLELSKANA-EGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg--~dslmWaalN~-gGrTVFLEEd~~~i~~~~~~~ 168 (314)
.......+.+..++....+-++|..|-| ..++.++...+ +++-+-+|-++..++.+++..
T Consensus 43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (239)
T 2hnk_A 43 QISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW 105 (239)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 3466777777777777888999999776 44555555444 789999999999998888753
No 28
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=36.81 E-value=92 Score=23.76 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=41.2
Q ss_pred CHHHHH-HHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFK-FLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~-~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+..++. .+.+.+..+..-++|.+|-|...+.......+++-+-+|-++..++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~ 74 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN 74 (192)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH
Confidence 444443 445556557778999999988776666666668888889899888877764
No 29
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=36.33 E-value=1e+02 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=38.5
Q ss_pred hhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCC
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p 169 (314)
+....|-++|+.|.|...+.-..+.+ +++-+.+|-|+.-++.+++..+
T Consensus 86 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 86 FLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp HHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 44567899999999988777766665 4688999999999998887654
No 30
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=35.98 E-value=72 Score=26.62 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcC-CCCcEEEecCChhhHHHhhhcC
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKAN-AEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN-~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
.....+.+.+..+++...+-++|-+|-|.. ++.++... .+|+-+.+|-++.+++.+++..
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~ 117 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYW 117 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 346666777777776678889999988644 34444333 3789999999999998887653
No 31
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=35.77 E-value=1.3e+02 Score=22.75 Aligned_cols=57 Identities=7% Similarity=-0.026 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+..-...+.+.+.....-++|=+|-|...+.......+++.+-+|-++..++.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 76 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN 76 (183)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 344445666667666778999998887766555555777888888899888887765
No 32
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=35.28 E-value=1e+02 Score=27.34 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred hhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCC
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p 169 (314)
+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+
T Consensus 91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~ 140 (304)
T 3bwc_A 91 CSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP 140 (304)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence 33467899999999987776666655 4688899999999998887664
No 33
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.17 E-value=38 Score=24.35 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHH
Q 021323 147 AEGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLL 189 (314)
Q Consensus 147 ~gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL 189 (314)
.+-+-+.+|+|+.....+++..-. .-|.|..-....+|.+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l 46 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHNGFDAGIKL 46 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHH
Confidence 345667788888776655542211 235565444455555444
No 34
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.29 E-value=19 Score=29.23 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=14.3
Q ss_pred ccCccEEEEeCCCCCCC
Q 021323 223 KHKWDVIVVDGPRGDML 239 (314)
Q Consensus 223 e~~WDvImVDgP~Gy~p 239 (314)
.-+.|+|+||+|.|...
T Consensus 129 ~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HTCCSEEEEEECTTCTT
T ss_pred cCCCCEEEEeCCCcccH
Confidence 45789999999998755
No 35
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=34.07 E-value=80 Score=28.58 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCCC
Q 021323 113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
.|+-+-...+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+..++.+++..+.
T Consensus 95 ~e~l~~l~l~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~ 154 (314)
T 2b2c_A 95 QEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG 154 (314)
T ss_dssp HHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44333233344567899999999977665555544 57899999999999999987764
No 36
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=34.05 E-value=18 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.0
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-+.|+|+||+|.|..
T Consensus 107 ~~yD~viID~p~~l~ 121 (224)
T 1byi_A 107 QQADWVLVEGAGGWF 121 (224)
T ss_dssp TTCSEEEEECSSSTT
T ss_pred HhCCEEEEEcCCccc
Confidence 368999999999876
No 37
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=33.71 E-value=63 Score=27.49 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhh--hhhc-CCCCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE--LSKA-NAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm--Waal-N~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.+..+++..+...+.-+...++|..|-|...+. ++.. +++++-+.+|-++..++.++++
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 156 (277)
T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 156 (277)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 357788888888887777889999988765543 3333 4578888888888888877764
No 38
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=33.49 E-value=18 Score=29.67 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.6
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-++|+|+||+|.|..
T Consensus 110 ~~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ 124 (237)
T ss_dssp GGCSEEEEECCSSSS
T ss_pred hcCCEEEEECCCCcC
Confidence 468999999998764
No 39
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=33.42 E-value=88 Score=26.08 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=37.1
Q ss_pred HHHHhhc---cCCccEEEeccCchhhh--hhhcCCCCcEEEecCChhhHHHhhhcCCCc
Q 021323 118 LSNLITS---KAPCNLLIFGLDPQYLE--LSKANAEGITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 118 ~~~VL~~---raPCNfLVFGLg~dslm--WaalN~gGrTVFLEEd~~~i~~~~~~~p~l 171 (314)
+.+.+.+ ..+-++|.+|-|...+. ++...+|++.+-+|-++..++.++++.+++
T Consensus 74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 132 (269)
T 1p91_A 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV 132 (269)
T ss_dssp HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCc
Confidence 4444444 45678999988765443 333334778888999999999888876543
No 40
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=33.26 E-value=77 Score=25.49 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhc--cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCc
Q 021323 113 KEFKFLSNLITS--KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 113 ~Ei~~~~~VL~~--raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~l 171 (314)
.+...+.+.|.+ ..+-++|=+|-|...........+.+.+-+|-++..++.++++.+++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~ 85 (239)
T 3bxo_A 25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85 (239)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCC
Confidence 455566666665 45678999988766555544555667888999999999888776543
No 41
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=32.91 E-value=71 Score=28.52 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=38.8
Q ss_pred HHhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCC
Q 021323 120 NLITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 120 ~VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p 169 (314)
..+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+
T Consensus 71 ~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 122 (314)
T 1uir_A 71 AMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP 122 (314)
T ss_dssp HHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred HHhcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 3344567899999999977766655555 5688999999999998887654
No 42
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=32.21 E-value=77 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCC
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
...-+..+.+.+..+..-++|-+|-|...+.......+++.+-+|-++..++.++++...
T Consensus 55 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 114 (231)
T 1vbf_A 55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114 (231)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh
Confidence 445566667777667778999998886655554445568888899999999888876543
No 43
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=31.86 E-value=90 Score=25.07 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcCC
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~p 169 (314)
.+...-+..+.+.+....+-++|=+|-|...+.......+ .+.+-+|-++..++.++++..
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4566777888888888889999999887666555444444 688889999999988887643
No 44
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=31.56 E-value=1.1e+02 Score=24.97 Aligned_cols=50 Identities=6% Similarity=0.005 Sum_probs=40.7
Q ss_pred cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCceeE
Q 021323 125 KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRTQIY 174 (314)
Q Consensus 125 raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~leay 174 (314)
+.+-++|-+|-|...........|.+.+-+|-++..++.++++.++++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 96 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVY 96 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEE
Confidence 46789999999888877777777888899999999999999886654443
No 45
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=31.34 E-value=97 Score=25.31 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCc--hhhhhhh-cCCCCcEEEecCChhhHHHhhhc
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDP--QYLELSK-ANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmWaa-lN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+......+.+..+++...|-++|=.|-|. .++.++. ++.+|+-+-+|-++..++.++++
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 102 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQM 102 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH
Confidence 45666677777888778899999998864 4444443 35688999999999999888764
No 46
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=31.30 E-value=67 Score=26.30 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=37.2
Q ss_pred hhccCCccEEEeccCchhhhhhhcC--CCCcEEEecCChhhHHHhhhcCCCce
Q 021323 122 ITSKAPCNLLIFGLDPQYLELSKAN--AEGITVFLEDDSNKINAVKRKSNRTQ 172 (314)
Q Consensus 122 L~~raPCNfLVFGLg~dslmWaalN--~gGrTVFLEEd~~~i~~~~~~~p~le 172 (314)
+....+-++|-+|-|...+...... ++++.+-+|-++..++.++++.++++
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 81 (259)
T 2p35_A 29 VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTN 81 (259)
T ss_dssp CCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcE
Confidence 3345678999998876555444333 48899999999999998887655543
No 47
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=31.15 E-value=96 Score=27.95 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=39.8
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCCC
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
.+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+.
T Consensus 111 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~ 162 (321)
T 2pt6_A 111 MTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162 (321)
T ss_dssp HHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 344567899999999988776666655 57888999999999999887664
No 48
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=31.11 E-value=31 Score=29.40 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=19.9
Q ss_pred ccCccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCCCceEE
Q 021323 223 KHKWDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVV 264 (314)
Q Consensus 223 e~~WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg~TdVf 264 (314)
|.+||||+|= --| +++..|--+||.|-.+-|+
T Consensus 4 e~~yDvvIIG----~Gp------AGl~aA~~l~~~g~~V~li 35 (312)
T 4gcm_A 4 EIDFDIAIIG----AGP------AGMTAAVYASRANLKTVMI 35 (312)
T ss_dssp CCSEEEEEEC----CSH------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEC----CCH------HHHHHHHHHHHCCCCEEEE
Confidence 4689999994 333 4555555677777544444
No 49
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=30.85 E-value=97 Score=23.68 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 113 KEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 113 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.....+.+.+..+..-++|-+|-|...+.......+++.+-+|-++..++.++++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 93 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN 93 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 5667777777777788999998886665554444477888888888888877654
No 50
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=30.75 E-value=83 Score=25.30 Aligned_cols=60 Identities=5% Similarity=0.027 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC--CcEEEecCChhhHHHhhhcC
Q 021323 109 ALTKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE--GITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g--GrTVFLEEd~~~i~~~~~~~ 168 (314)
.+....+..+.+.+....+-++|=+|-|...+.......+ .+.+-+|-++..++.++++.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5677788889999988888999999887665554444433 57788888998888887764
No 51
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=30.70 E-value=22 Score=30.24 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.8
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-++|+|+||+|.|..
T Consensus 127 ~~yD~ViID~pp~~~ 141 (262)
T 2ph1_A 127 GELDHLLIDLPPGTG 141 (262)
T ss_dssp CSCSEEEEECCSSSS
T ss_pred cCCCEEEEECcCCCc
Confidence 468999999999864
No 52
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=30.58 E-value=82 Score=25.88 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCcCCHHHHHH-HHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 107 ASALTKKEFKF-LSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 107 ~~~~t~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
...++..|+.. +...+.-+..-.+|-.|-|...+.......+++.+-+|-++..++.++++
T Consensus 35 ~~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~ 96 (204)
T 3njr_A 35 DGQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN 96 (204)
T ss_dssp SSCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 44677777754 44555556677899998876554432223388888899999998887764
No 53
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=30.52 E-value=80 Score=26.49 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCchhhh--hhh-cCCCCcEEEecCChhhHHHhhhc
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE--LSK-ANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm--Waa-lN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+..+++..+...+.-+...++|..|-|...+. ++. ++++++-+-+|-++..++.++++
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 143 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 143 (280)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 46778888888777777889999988755443 333 34578888888888888877764
No 54
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=30.47 E-value=1.1e+02 Score=24.80 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcCC-CCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKANA-EGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~-gGrTVFLEEd~~~i~~~~~~ 167 (314)
+......+..++....+-++|-.|-|.. ++.++...+ +|+-+-+|-++..++.++++
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 102 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 4555666666666778999999988654 444444444 78888899999998877764
No 55
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=29.70 E-value=95 Score=26.17 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCCCc
Q 021323 118 LSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSNRT 171 (314)
Q Consensus 118 ~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p~l 171 (314)
+.+.+..+.+-++|-.|-|...+......+|++.+-+|-++..++.++++.+++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 102 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL 102 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 344555567789999999877766665668899999999999999888765443
No 56
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=28.73 E-value=1.2e+02 Score=24.72 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCc--hhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDP--QYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
........+...+....+-++|.+|-|. -++.++...++++-+-+|-++..++.++++
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 97 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH 97 (233)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3455566677777777788999997764 445555555578888889899888887765
No 57
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.57 E-value=25 Score=27.96 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.8
Q ss_pred CccEEEEeCCCCCC
Q 021323 225 KWDVIVVDGPRGDM 238 (314)
Q Consensus 225 ~WDvImVDgP~Gy~ 238 (314)
+.|+|+||+|.|..
T Consensus 75 ~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS 88 (206)
T ss_dssp TSSEEEEECCSSSS
T ss_pred CCCEEEEECCCCCC
Confidence 57999999998763
No 58
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=28.02 E-value=1.4e+02 Score=23.97 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcCC-CCcEEEecCChhhHHHhhhcC
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKANA-EGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~-gGrTVFLEEd~~~i~~~~~~~ 168 (314)
........+..+++...+-++|-.|-|.. ++.++...+ +|+-+-+|-++..++.++++.
T Consensus 40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 101 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML 101 (210)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 34455555555555577889999988654 444444434 788888999999988877643
No 59
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=27.79 E-value=2.3e+02 Score=22.54 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHhhc-cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcCC
Q 021323 114 EFKFLSNLITS-KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 114 Ei~~~~~VL~~-raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~p 169 (314)
....+.+.|.+ ..+.++|=+|=|...+.-.....|.+.+-+|-++..++.++++.+
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~ 85 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK 85 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhh
Confidence 34556666765 567899999988776666556667788999999999999988766
No 60
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=27.76 E-value=96 Score=26.07 Aligned_cols=59 Identities=8% Similarity=-0.022 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhc-CCCCcEEEecCChhhHHHhhhcC
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKA-NAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaal-N~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
.+..+...+..+++...|-++|-.|-|.. ++.++.. ..+|+-+-+|-|+.+++.+++..
T Consensus 54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~ 115 (237)
T 3c3y_A 54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI 115 (237)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 35566666666677778899999988643 3444433 33799999999999999888654
No 61
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=26.99 E-value=1.4e+02 Score=23.90 Aligned_cols=57 Identities=12% Similarity=-0.015 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhhcc--CCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSK--APCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
....+..+.+.|... .+-++|-+|-|...+.......|.+.+-+|-++..++.++++
T Consensus 20 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~ 78 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH
Confidence 345567777888775 678999999887766655556677888899999888877764
No 62
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=26.45 E-value=1.4e+02 Score=24.85 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCc--hhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDP--QYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+.......+...++...+-++|=.|-|. .++.++...++++-+-+|=++..++.++++
T Consensus 55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 114 (232)
T 3ntv_A 55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN 114 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3455556666666667889999998764 444454444678888889888888877654
No 63
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=26.01 E-value=95 Score=25.01 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=41.7
Q ss_pred HHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCC-cEEEecCChhhHHHhhhcCC
Q 021323 114 EFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEG-ITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 114 Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gG-rTVFLEEd~~~i~~~~~~~p 169 (314)
+...+.+.+....+-++|-+|-|...........|. +.+-+|-++..++.++++..
T Consensus 31 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 87 (243)
T 3bkw_A 31 EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP 87 (243)
T ss_dssp THHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC
T ss_pred hHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc
Confidence 445677777777788999998886655554445555 78889999999988887654
No 64
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=25.94 E-value=1.2e+02 Score=24.83 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHhhc---cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITS---KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~---raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
..+++..+.++++. +.+-++|=+|-|...........|.+.+-+|-++..++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 82 (252)
T 1wzn_A 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82 (252)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 35677778888776 4567999998887666555555678888899999998877754
No 65
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=25.79 E-value=30 Score=28.97 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.6
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-+.|+|+||+|.|..
T Consensus 109 ~~yD~viiD~~~~~~ 123 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE 123 (263)
T ss_dssp HTCSEEEEECCSSSS
T ss_pred hhCCEEEEeCCCCCC
Confidence 468999999998764
No 66
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=25.71 E-value=65 Score=25.74 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
...-+..+...+..+..-++|-+|-|.....-.....+++-+-+|-++..++.++++
T Consensus 62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~ 118 (210)
T 3lbf_A 62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR 118 (210)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 445556666777777889999998875544333333377888888888888877665
No 67
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.23 E-value=1.4e+02 Score=22.20 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHHH
Q 021323 148 EGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLLK 190 (314)
Q Consensus 148 gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~ 190 (314)
..+-+.+|+|+.....++...-.. -|.|..-....+|-++++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 55 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL-PYTLHFARDATQALQLLA 55 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhccc-CcEEEEECCHHHHHHHHH
Confidence 456778888888766655543332 266665555566666553
No 68
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=25.03 E-value=45 Score=30.75 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=31.7
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCC-hhh
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDD-SNK 160 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd-~~~ 160 (314)
.|++...|.+++.|=|.|+..|.-.|.++.+.|.|=| |+-
T Consensus 92 fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~v 132 (334)
T 1rjd_A 92 FLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNES 132 (334)
T ss_dssp HHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHH
T ss_pred HHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHH
Confidence 3444567999999999999999998876677888877 443
No 69
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=24.64 E-value=9.5 Score=30.47 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCccccccccCCchhhhccCccEEEEeCCCCCCC
Q 021323 196 PACAPRSELLPSSKCKLTRKDLPQEVFKHKWDVIVVDGPRGDML 239 (314)
Q Consensus 196 ~~C~p~~~~l~~S~CkLAL~~LP~evYe~~WDvImVDgP~Gy~p 239 (314)
-+|.+.. ....|.+ +.|-=.|=|+.||+|+ +|+||.+
T Consensus 4 ~~C~~~~---~~~~C~r--~~l~V~F~dlGWdWIi--aP~~y~a 40 (109)
T 3hh2_A 4 LDCDEHS---TESRCCR--YPLTVDFEAFGWDWII--APKRYKA 40 (109)
T ss_dssp CBCCTTC---CCCBSEE--ECCEEEHHHHTCTTEE--ECSEEEC
T ss_pred ccCCCCC---CCCCcEE--EEEEEeHHHcCCCeEe--CCCcccc
Confidence 4577642 3456876 5788888899999766 6999954
No 70
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=24.48 E-value=1.7e+02 Score=23.00 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=39.6
Q ss_pred HHHHHHHhhc-cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 115 FKFLSNLITS-KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 115 i~~~~~VL~~-raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
+..+.+.|.+ ...-++|-+|-|...+.......|.+.+-+|-++..++.+++.
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~ 87 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH 87 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc
Confidence 4556666664 4457999998887766655555678888899999999888873
No 71
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=24.42 E-value=1.1e+02 Score=27.27 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=36.9
Q ss_pred hccCCccEEEeccCchhhhhhhcCC--CCcEEEecCChhhHHHhhhcCC
Q 021323 123 TSKAPCNLLIFGLDPQYLELSKANA--EGITVFLEDDSNKINAVKRKSN 169 (314)
Q Consensus 123 ~~raPCNfLVFGLg~dslmWaalN~--gGrTVFLEEd~~~i~~~~~~~p 169 (314)
....|-++|+.|.|...+.-..+.+ .++-+.+|-|+..++.+++..+
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 140 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 140 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 3467889999999977665555554 3788999999999999888654
No 72
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=24.41 E-value=1.4e+02 Score=25.08 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcCC-CCcEEEecCChhhHHHhhhcC
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKANA-EGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~-gGrTVFLEEd~~~i~~~~~~~ 168 (314)
+......+..++....+-++|-.|-|.. ++.++...+ +|+-+-+|-++..++.++++.
T Consensus 48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~ 108 (248)
T 3tfw_A 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL 108 (248)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555566666666678899999988754 444444434 788889999999988887653
No 73
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=24.35 E-value=98 Score=24.77 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCchhhhhhhcCCC---CcEEEecCChhhHHHhhhc
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQYLELSKANAE---GITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~dslmWaalN~g---GrTVFLEEd~~~i~~~~~~ 167 (314)
...-+..+.+.+..+..-++|.+|-|...+.......+ ++-+-+|-++..++.++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 121 (215)
T 2yxe_A 62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT 121 (215)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 34455566666666777899999887655444333333 6777788888887777664
No 74
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=23.55 E-value=34 Score=28.93 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.7
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-+.|+|+||+|.|..
T Consensus 110 ~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS 124 (257)
T ss_dssp TTCSEEEEECCSSCC
T ss_pred cCCCEEEEeCCCCCC
Confidence 468999999998864
No 75
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=23.47 E-value=33 Score=30.91 Aligned_cols=33 Identities=9% Similarity=0.275 Sum_probs=21.2
Q ss_pred CccEEEe----ccCch----hhhhhhcCCCCcEEEecCChh
Q 021323 127 PCNLLIF----GLDPQ----YLELSKANAEGITVFLEDDSN 159 (314)
Q Consensus 127 PCNfLVF----GLg~d----slmWaalN~gGrTVFLEEd~~ 159 (314)
.-.++|| |.|.- .+.++.-..|-||+.+|-|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3456677 55543 234444456779999999976
No 76
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=23.44 E-value=34 Score=28.29 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.1
Q ss_pred CccEEEEeCCCCCC
Q 021323 225 KWDVIVVDGPRGDM 238 (314)
Q Consensus 225 ~WDvImVDgP~Gy~ 238 (314)
+.|+|+||+|.|..
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 67999999998764
No 77
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=23.11 E-value=29 Score=29.77 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhhccCCccEEEe-----ccCch----hhhhhhcCCCCcEEEecCChhh
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIF-----GLDPQ----YLELSKANAEGITVFLEDDSNK 160 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVF-----GLg~d----slmWaalN~gGrTVFLEEd~~~ 160 (314)
..+.+..+.+.++.+...=.++. |.|.- .|.+..-..|-|++.+|-|+..
T Consensus 19 ~~~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 19 ELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred hHHHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34556666777766544432332 34532 2333333457799999999875
No 78
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=23.01 E-value=1.4e+02 Score=25.52 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHhhccCCccEEEeccCch--hhhhhhcCC-CCcEEEecCChhhHHHhhhcC
Q 021323 111 TKKEFKFLSNLITSKAPCNLLIFGLDPQ--YLELSKANA-EGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 111 t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmWaalN~-gGrTVFLEEd~~~i~~~~~~~ 168 (314)
....-..+..+++...|-++|-.|-|.. ++.++...+ +|+-+-+|-++.+++.+++..
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~ 124 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI 124 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555566666666678889999988754 333443333 789999999999999888654
No 79
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=22.97 E-value=27 Score=23.43 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=6.7
Q ss_pred eeceEecC
Q 021323 293 LWNFRLTD 300 (314)
Q Consensus 293 LwHF~Ip~ 300 (314)
-|||++|+
T Consensus 21 kwhfvlpg 28 (35)
T 1jy4_A 21 KWHFVLPG 28 (35)
T ss_dssp EEEEEETT
T ss_pred eeEEecCC
Confidence 59999986
No 80
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=22.96 E-value=24 Score=28.92 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=12.8
Q ss_pred CccEEEEeCCCCCCC
Q 021323 225 KWDVIVVDGPRGDML 239 (314)
Q Consensus 225 ~WDvImVDgP~Gy~p 239 (314)
+.|+|+||+|.|...
T Consensus 118 ~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH 132 (245)
T ss_dssp HCSEEEEEEESSCCT
T ss_pred hCCEEEEeCCCCCch
Confidence 789999999998743
No 81
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.69 E-value=2.8e+02 Score=21.81 Aligned_cols=84 Identities=6% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHhhccCCccEEEeccCchhhh----hhhcCCCCcE-EEecCChhhHHHhhhcCCCceeEEEeeccchhh
Q 021323 110 LTKKEFKFLSNLITSKAPCNLLIFGLDPQYLE----LSKANAEGIT-VFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKD 184 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPCNfLVFGLg~dslm----WaalN~gGrT-VFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~e 184 (314)
+.. ++..+.+.|.+. .-++.|||.|.-..+ ...++.-|.. .++.+.......+..-.++--.--+.|.-.-.+
T Consensus 34 ~~~-~i~~~~~~i~~a-~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~ 111 (183)
T 2xhz_A 34 INQ-NFTLACEKMFWC-KGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSE 111 (183)
T ss_dssp SSH-HHHHHHHHHHTC-SSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHH
T ss_pred HHH-HHHHHHHHHHhC-CCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHH
Confidence 345 888888888763 358999999964432 1223333544 455443333323333344545666777777778
Q ss_pred HHHHHHHHhcC
Q 021323 185 AYKLLKHARQN 195 (314)
Q Consensus 185 a~~LL~~ar~~ 195 (314)
.-++++.+|+.
T Consensus 112 ~~~~~~~ak~~ 122 (183)
T 2xhz_A 112 ITALIPVLKRL 122 (183)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
Confidence 88888888864
No 82
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=22.58 E-value=47 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred ccEEEEeCCCCCCCCCCCcchhhhhhhHhhhcCCCceEEEec
Q 021323 226 WDVIVVDGPRGDMLEAPGRMSTIYTASMLARNGETTNVVVHD 267 (314)
Q Consensus 226 WDvImVDgP~Gy~peaPGRM~AIyTAavlARaGg~TdVfVHD 267 (314)
+|||+| |-.| ++..+|..|||.|- +|.|-|
T Consensus 5 yDViIV----GaGp------aGl~~A~~La~~G~--~V~v~E 34 (397)
T 3oz2_A 5 YDVLVV----GGGP------GGSTAARYAAKYGL--KTLMIE 34 (397)
T ss_dssp EEEEEE----CCSH------HHHHHHHHHHHTTC--CEEEEC
T ss_pred CCEEEE----CcCH------HHHHHHHHHHHCCC--cEEEEe
Confidence 688888 4444 66777788888873 444544
No 83
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=22.34 E-value=1.3e+02 Score=23.35 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=35.6
Q ss_pred HHHHHhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhc
Q 021323 117 FLSNLITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRK 167 (314)
Q Consensus 117 ~~~~VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~ 167 (314)
.+.+.+....+-++|-+|-|...........|.+.+-+|-++..++.++++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 73 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI 73 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 344556666788999998876555444444477788888888888777654
No 84
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=22.34 E-value=31 Score=29.91 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=12.1
Q ss_pred cCccEEEEeCCCCC
Q 021323 224 HKWDVIVVDGPRGD 237 (314)
Q Consensus 224 ~~WDvImVDgP~Gy 237 (314)
-+.|+|+||+|.|.
T Consensus 102 ~~yD~viiD~p~~~ 115 (286)
T 2xj4_A 102 AECDFILIDTPGGD 115 (286)
T ss_dssp HHCSEEEEECCSSC
T ss_pred hcCCEEEEcCCCCc
Confidence 46899999999886
No 85
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=22.33 E-value=2.9e+02 Score=21.71 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhc--cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHH
Q 021323 113 KEFKFLSNLITS--KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINA 163 (314)
Q Consensus 113 ~Ei~~~~~VL~~--raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~ 163 (314)
.|...+.+.|+. ..+.++|=.|-|...+.......+ +.+-+|-++..++.
T Consensus 8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~ 59 (170)
T 3q87_B 8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES 59 (170)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT
T ss_pred ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc
Confidence 455566666766 677899999998877776666666 88888888888776
No 86
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=22.05 E-value=33 Score=28.92 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=12.3
Q ss_pred cCccEEEEeCCCCCC
Q 021323 224 HKWDVIVVDGPRGDM 238 (314)
Q Consensus 224 ~~WDvImVDgP~Gy~ 238 (314)
-+.|+|+||+|.|..
T Consensus 143 ~~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD 157 (267)
T ss_dssp TTCSEEEEEECSSCS
T ss_pred cCCCEEEEECcCCcc
Confidence 468999999998763
No 87
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=22.05 E-value=1.3e+02 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=37.0
Q ss_pred HHHHHHHHhhc-cCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcC
Q 021323 114 EFKFLSNLITS-KAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 114 Ei~~~~~VL~~-raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
....+.+.++. ..+-++|=.|=|.......+...|.+.+.+|-|+..++.++++.
T Consensus 140 ~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~ 195 (332)
T 2igt_A 140 HWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQ 195 (332)
T ss_dssp HHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 33345555542 34568888877665555444455668889999999999888753
No 88
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=21.92 E-value=1.2e+02 Score=24.41 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhc-cCCccEEEeccCchhhh--hhhcCCCCcEEEecCChhhHHHhhhcCCC
Q 021323 113 KEFKFLSNLITS-KAPCNLLIFGLDPQYLE--LSKANAEGITVFLEDDSNKINAVKRKSNR 170 (314)
Q Consensus 113 ~Ei~~~~~VL~~-raPCNfLVFGLg~dslm--WaalN~gGrTVFLEEd~~~i~~~~~~~p~ 170 (314)
..+..+.+.+.. ..+-++|=+|-|..... ++...++++.+-+|-++..++.++++...
T Consensus 30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 90 (234)
T 3dtn_A 30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90 (234)
T ss_dssp HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc
Confidence 334566666663 56789999988755444 44444578888899999998888877654
No 89
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=21.85 E-value=1.3e+02 Score=23.70 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=33.7
Q ss_pred HhhccCCccEEEeccCchhhhhhhcCCCCcEEEecCChhhHHHhhhcC
Q 021323 121 LITSKAPCNLLIFGLDPQYLELSKANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 121 VL~~raPCNfLVFGLg~dslmWaalN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
++....|-++|-+|-|...+.......|.+.+-+|-++..++.++++.
T Consensus 24 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 71 (202)
T 2kw5_A 24 VANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA 71 (202)
T ss_dssp HHHHSCSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 334333449999988876665555556778888888888888777653
No 90
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=21.68 E-value=2.3e+02 Score=23.74 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHhhccCCc---cEEEeccCch--hhhhhh-cCCCCcEEEecCChhhHHHhhhcC
Q 021323 110 LTKKEFKFLSNLITSKAPC---NLLIFGLDPQ--YLELSK-ANAEGITVFLEDDSNKINAVKRKS 168 (314)
Q Consensus 110 ~t~~Ei~~~~~VL~~raPC---NfLVFGLg~d--slmWaa-lN~gGrTVFLEEd~~~i~~~~~~~ 168 (314)
+....-..+..+++...|- ++|=.|-|.. ++.++. +..+|+-+-+|-|+..++.+++..
T Consensus 37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 101 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF 101 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555555666665555666 8999988754 333333 456899999999999998887653
No 91
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.67 E-value=99 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCcEEEecCChhhHHHhhhcCCCceeEEEeeccchhhHHHHH
Q 021323 148 EGITVFLEDDSNKINAVKRKSNRTQIYKVDYQRPAKDAYKLL 189 (314)
Q Consensus 148 gGrTVFLEEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL 189 (314)
.-+-+.+|+|+.....++...-. .-|.|..-....+|-+++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~l 46 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEK-GGFDSDMVHSAAQALEQV 46 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECCHHHHHHHH
Confidence 45677888888876655542211 124554444455555555
No 92
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=21.52 E-value=40 Score=30.69 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.7
Q ss_pred hhhhhcCCCCcEEEecCChh
Q 021323 140 LELSKANAEGITVFLEDDSN 159 (314)
Q Consensus 140 lmWaalN~gGrTVFLEEd~~ 159 (314)
+.++.-..|-|++.+|-|+.
T Consensus 46 LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 46 TGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp HHHHHHHSSCCEEEEECCTT
T ss_pred HHHHHHHCCCeEEEEeCCCC
Confidence 44444456889999999985
No 93
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=21.49 E-value=30 Score=28.71 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.0
Q ss_pred ccCccEEEEeCCCC-CC
Q 021323 223 KHKWDVIVVDGPRG-DM 238 (314)
Q Consensus 223 e~~WDvImVDgP~G-y~ 238 (314)
.-++|+|+||.|.| ..
T Consensus 65 ~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 65 APKYQNIVIDTQARPED 81 (209)
T ss_dssp GGGCSEEEEEEECCCSS
T ss_pred hhcCCEEEEeCCCCcCc
Confidence 35689999999998 54
No 94
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.26 E-value=30 Score=31.83 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=20.8
Q ss_pred ccEEEe----ccCchh----hhhhhc--CCCCcEEEecCChh
Q 021323 128 CNLLIF----GLDPQY----LELSKA--NAEGITVFLEDDSN 159 (314)
Q Consensus 128 CNfLVF----GLg~ds----lmWaal--N~gGrTVFLEEd~~ 159 (314)
--++|| |.|.-+ +.++.- ..|-||+.+|-|+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 356666 455432 344444 66889999999985
No 95
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=21.25 E-value=33 Score=31.40 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHhh------ccCCccEEEe-----ccCchh----hhhhhc------CCCCcEEEecCChh
Q 021323 109 ALTKKEFKFLSNLIT------SKAPCNLLIF-----GLDPQY----LELSKA------NAEGITVFLEDDSN 159 (314)
Q Consensus 109 ~~t~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmWaal------N~gGrTVFLEEd~~ 159 (314)
.+|.+|+..+.+... ....+..++| |-|.-+ |.+..- +.|-|++.+|=|+.
T Consensus 86 ~~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 86 ALTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp CBCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred ccCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 358888888876632 1246776666 344322 333222 56889999999974
No 96
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=20.59 E-value=35 Score=31.59 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=22.0
Q ss_pred CCccEEEe----ccCch----hhhhhhc--CCCCcEEEecCChh
Q 021323 126 APCNLLIF----GLDPQ----YLELSKA--NAEGITVFLEDDSN 159 (314)
Q Consensus 126 aPCNfLVF----GLg~d----slmWaal--N~gGrTVFLEEd~~ 159 (314)
.+-.++|| |-|.- .+.|... ..|-||+.+|-|+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 44577777 33432 3344444 77899999999965
No 97
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=20.43 E-value=35 Score=31.07 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=34.0
Q ss_pred CcCCHHHHHHHHHHhh------ccCCccEEEe-----ccCchh----hhhhhc------CCCCcEEEecCChh
Q 021323 108 SALTKKEFKFLSNLIT------SKAPCNLLIF-----GLDPQY----LELSKA------NAEGITVFLEDDSN 159 (314)
Q Consensus 108 ~~~t~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmWaal------N~gGrTVFLEEd~~ 159 (314)
..+|.+++..+.+.+. ...++..++| |-|.-+ |.|..- +.|-|++.+|=|+.
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 82 YAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp ECBCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred ecCCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 3458999998888863 2345777766 445322 333222 46889999999974
No 98
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.29 E-value=2.7e+02 Score=23.56 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=5.2
Q ss_pred CcEEEecCCh
Q 021323 149 GITVFLEDDS 158 (314)
Q Consensus 149 GrTVFLEEd~ 158 (314)
|..|.+++..
T Consensus 93 gd~vl~~~~~ 102 (371)
T 2e7j_A 93 DAWVVMDENC 102 (371)
T ss_dssp TCEEEEETTC
T ss_pred CCEEEEccCc
Confidence 4556555443
Done!