Query 021324
Match_columns 314
No_of_seqs 235 out of 1495
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 16:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 74.4 0.77 5.6E-05 30.6 2.1 25 28-52 17-41 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 62.6 0.73 5.3E-05 37.8 -0.0 24 31-56 183-206 (230)
3 d2dmda2 g.37.1.1 (A:8-33) Zinc 46.4 2.1 0.00015 23.6 0.1 15 45-59 2-16 (26)
4 d2adra2 g.37.1.1 (A:131-161) A 41.5 2.1 0.00015 24.9 -0.4 14 45-58 2-15 (31)
5 d1joca1 g.50.1.1 (A:1348-1411) 40.1 6 0.00044 26.3 1.8 24 31-54 9-34 (64)
6 d2dkta2 g.93.1.1 (A:82-137) RI 40.0 4.6 0.00033 26.7 1.1 38 32-69 4-45 (56)
7 d1vfya_ g.50.1.1 (A:) vps27p p 39.6 5.1 0.00037 27.0 1.3 23 32-54 7-31 (67)
8 d2c6aa1 g.41.11.1 (A:290-335) 37.8 6.7 0.00049 24.7 1.5 22 30-51 13-34 (46)
9 d1dvpa2 g.50.1.1 (A:149-220) H 34.1 8.4 0.00061 26.2 1.8 24 31-54 14-39 (72)
10 d1wfka_ g.50.1.1 (A:) Zinc fin 33.5 7.9 0.00058 27.5 1.6 24 30-53 9-34 (88)
11 d1njqa_ g.37.1.3 (A:) SUPERMAN 30.7 7.1 0.00051 23.6 0.7 13 41-53 2-14 (37)
12 d2cr8a1 g.41.11.1 (A:8-48) MDM 29.1 11 0.00082 23.1 1.5 20 32-51 6-25 (41)
13 d1tota1 g.44.1.6 (A:1-52) CREB 25.0 8.4 0.00061 24.8 0.4 22 30-52 6-27 (52)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=74.42 E-value=0.77 Score=30.57 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=21.8
Q ss_pred ccceecccCCcccCCCCCCCccCCc
Q 021324 28 VRVKYCDTCMLYRPPRCSHCSICNN 52 (314)
Q Consensus 28 ~~~k~C~tC~~~rPpRs~HCs~C~~ 52 (314)
...+.|..|...-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 3567899999999999999998865
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=62.59 E-value=0.73 Score=37.77 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.8
Q ss_pred eecccCCcccCCCCCCCccCCccccC
Q 021324 31 KYCDTCMLYRPPRCSHCSICNNCVER 56 (314)
Q Consensus 31 k~C~tC~~~rPpRs~HCs~C~~CV~r 56 (314)
..-.+| |+|.+.+||..|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 444567 788899999999999987
No 3
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.44 E-value=2.1 Score=23.57 Aligned_cols=15 Identities=33% Similarity=1.030 Sum_probs=11.9
Q ss_pred CCCccCCccccCCCc
Q 021324 45 SHCSICNNCVERFDH 59 (314)
Q Consensus 45 ~HCs~C~~CV~rfDH 59 (314)
|-|.+|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 568999999887663
No 4
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=41.46 E-value=2.1 Score=24.86 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=11.9
Q ss_pred CCCccCCccccCCC
Q 021324 45 SHCSICNNCVERFD 58 (314)
Q Consensus 45 ~HCs~C~~CV~rfD 58 (314)
..|.+|++|..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 46999999998876
No 5
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.05 E-value=6 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=16.5
Q ss_pred eecccCCcc--cCCCCCCCccCCccc
Q 021324 31 KYCDTCMLY--RPPRCSHCSICNNCV 54 (314)
Q Consensus 31 k~C~tC~~~--rPpRs~HCs~C~~CV 54 (314)
+-|..|... --.|-|||+.|++-+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 457778542 234789999998754
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.98 E-value=4.6 Score=26.72 Aligned_cols=38 Identities=32% Similarity=0.732 Sum_probs=16.6
Q ss_pred ecccCCccc-CCCCCCCccCCccccCC---CccccccCcccc
Q 021324 32 YCDTCMLYR-PPRCSHCSICNNCVERF---DHHCPWVGQCIG 69 (314)
Q Consensus 32 ~C~tC~~~r-PpRs~HCs~C~~CV~rf---DHHCpWvgnCIG 69 (314)
||..|+++- -....||..||-|-..- -.||.=-+.|+.
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~ 45 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 45 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccC
Confidence 455555542 12234555555554221 124544444443
No 7
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.61 E-value=5.1 Score=26.95 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=16.1
Q ss_pred ecccCCc--ccCCCCCCCccCCccc
Q 021324 32 YCDTCML--YRPPRCSHCSICNNCV 54 (314)
Q Consensus 32 ~C~tC~~--~rPpRs~HCs~C~~CV 54 (314)
-|..|.. ..-.|-|||+.||+-+
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccccCCCcccCcccccccccCCCEe
Confidence 3777765 3345889999998754
No 8
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.79 E-value=6.7 Score=24.75 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=18.7
Q ss_pred ceecccCCcccCCCCCCCccCC
Q 021324 30 VKYCDTCMLYRPPRCSHCSICN 51 (314)
Q Consensus 30 ~k~C~tC~~~rPpRs~HCs~C~ 51 (314)
.--|..|+..-||--.||..|=
T Consensus 13 ~WkC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 13 YWKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTC
T ss_pred hccCccccccCCcchhHhHHHH
Confidence 3459999999999999998773
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.12 E-value=8.4 Score=26.23 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=17.3
Q ss_pred eecccCCcc--cCCCCCCCccCCccc
Q 021324 31 KYCDTCMLY--RPPRCSHCSICNNCV 54 (314)
Q Consensus 31 k~C~tC~~~--rPpRs~HCs~C~~CV 54 (314)
..|..|... --.|-|||+.|++.+
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccccCCCcccCccccccccccCCee
Confidence 358888753 345889999998854
No 10
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.50 E-value=7.9 Score=27.48 Aligned_cols=24 Identities=17% Similarity=0.359 Sum_probs=17.2
Q ss_pred ceecccCCcc--cCCCCCCCccCCcc
Q 021324 30 VKYCDTCMLY--RPPRCSHCSICNNC 53 (314)
Q Consensus 30 ~k~C~tC~~~--rPpRs~HCs~C~~C 53 (314)
...|..|... ---|-|||+.|++.
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~v 34 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCcCcccCchhccccccccccccChh
Confidence 4568888653 34578999999884
No 11
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.73 E-value=7.1 Score=23.60 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=11.0
Q ss_pred CCCCCCCccCCcc
Q 021324 41 PPRCSHCSICNNC 53 (314)
Q Consensus 41 PpRs~HCs~C~~C 53 (314)
|+|.+-|..|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7889999999874
No 12
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.15 E-value=11 Score=23.06 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=17.3
Q ss_pred ecccCCcccCCCCCCCccCC
Q 021324 32 YCDTCMLYRPPRCSHCSICN 51 (314)
Q Consensus 32 ~C~tC~~~rPpRs~HCs~C~ 51 (314)
-|..|...-||=-.||..|=
T Consensus 6 kC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecCcccccCCcchhHHHHHH
Confidence 59999999999999988773
No 13
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.01 E-value=8.4 Score=24.82 Aligned_cols=22 Identities=32% Similarity=0.828 Sum_probs=16.4
Q ss_pred ceecccCCcccCCCCCCCccCCc
Q 021324 30 VKYCDTCMLYRPPRCSHCSICNN 52 (314)
Q Consensus 30 ~k~C~tC~~~rPpRs~HCs~C~~ 52 (314)
+..|..|+..-+.| +||..|..
T Consensus 6 ~~tCd~C~~~i~~R-y~C~~C~D 27 (52)
T d1tota1 6 VYTCNECKHHVETR-WHCTVCED 27 (52)
T ss_dssp CEEETTTTEEESSE-EEESSSSS
T ss_pred EEECcCCCCcCCCc-eECCCCCC
Confidence 45799998776655 89988854
Done!