Query 021325
Match_columns 314
No_of_seqs 118 out of 1252
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05462 Dicty_CAR: Slime mold 100.0 8.8E-39 1.9E-43 275.5 29.3 262 11-279 2-269 (303)
2 KOG4219 G protein-coupled rece 100.0 8.5E-32 1.8E-36 231.5 14.8 267 10-281 30-336 (423)
3 PHA03234 DNA packaging protein 100.0 7E-30 1.5E-34 226.6 25.0 258 13-280 30-316 (338)
4 PHA03235 DNA packaging protein 100.0 7E-27 1.5E-31 212.0 28.6 256 15-280 32-323 (409)
5 PHA02834 chemokine receptor-li 100.0 1.8E-27 4E-32 210.8 22.5 251 13-278 26-307 (323)
6 KOG4193 G protein-coupled rece 99.9 8E-26 1.7E-30 210.5 23.9 252 15-279 319-580 (610)
7 PHA02638 CC chemokine receptor 99.9 5.5E-25 1.2E-29 200.4 28.6 254 14-281 97-394 (417)
8 PF02101 Ocular_alb: Ocular al 99.9 2.3E-25 5E-30 190.6 20.1 252 11-267 22-314 (405)
9 PF00001 7tm_1: 7 transmembran 99.9 5.4E-24 1.2E-28 181.5 22.0 233 32-264 1-257 (257)
10 PHA03087 G protein-coupled che 99.9 5.7E-24 1.2E-28 189.8 23.0 259 12-283 37-322 (335)
11 KOG4220 Muscarinic acetylcholi 99.9 1.5E-26 3.3E-31 198.9 4.9 261 14-281 29-484 (503)
12 KOG4564 Adenylate cyclase-coup 99.9 5.1E-23 1.1E-27 184.1 17.1 249 18-280 147-419 (473)
13 PF00002 7tm_2: 7 transmembran 99.9 3.5E-25 7.6E-30 188.6 1.8 230 17-259 2-241 (242)
14 KOG2087 Glycoprotein hormone r 99.8 1.1E-21 2.4E-26 167.5 5.4 256 17-280 26-306 (363)
15 PF11710 Git3: G protein-coupl 99.8 1E-18 2.2E-23 142.9 14.8 172 20-193 5-199 (201)
16 KOG4289 Cadherin EGF LAG seven 99.7 1.2E-16 2.5E-21 154.0 13.3 251 2-279 2146-2399(2531)
17 PF01534 Frizzled: Frizzled/Sm 99.7 7.5E-14 1.6E-18 121.9 27.0 267 10-280 3-324 (328)
18 PF10320 7TM_GPCR_Srsx: Serpen 99.7 1.5E-15 3.3E-20 130.0 13.8 243 27-281 2-256 (257)
19 PF10328 7TM_GPCR_Srx: Serpent 99.4 3.7E-10 8E-15 97.9 22.6 246 25-280 3-271 (274)
20 PF05296 TAS2R: Mammalian tast 99.2 2.9E-08 6.2E-13 87.0 24.9 258 17-280 8-297 (303)
21 PF10324 7TM_GPCR_Srw: Serpent 99.1 1.2E-08 2.5E-13 90.5 19.8 250 24-281 5-314 (318)
22 PF10323 7TM_GPCR_Srv: Serpent 99.0 2E-08 4.3E-13 87.3 16.2 249 26-277 5-280 (283)
23 PF10321 7TM_GPCR_Srt: Serpent 99.0 5.8E-08 1.3E-12 84.9 18.7 250 13-281 30-304 (313)
24 PF10317 7TM_GPCR_Srd: Serpent 98.9 1E-06 2.2E-11 77.1 24.7 250 21-274 4-290 (292)
25 PF10292 7TM_GPCR_Srab: Serpen 98.6 0.00022 4.9E-09 63.3 28.8 141 16-156 17-177 (324)
26 PF11970 Git3_C: G protein-cou 98.6 1.5E-07 3.2E-12 63.9 6.4 65 204-268 5-71 (76)
27 PF02076 STE3: Pheromone A rec 98.3 0.00037 8E-09 60.3 21.9 239 28-270 3-279 (283)
28 PF02118 Srg: Srg family chemo 97.9 0.0091 2E-07 51.6 22.8 113 27-139 9-144 (275)
29 PF10327 7TM_GPCR_Sri: Serpent 97.8 0.0024 5.1E-08 56.2 17.4 247 18-268 11-296 (303)
30 PF10319 7TM_GPCR_Srj: Serpent 97.8 0.015 3.1E-07 50.5 21.4 245 22-267 11-302 (310)
31 PF10318 7TM_GPCR_Srh: Serpent 97.4 0.084 1.8E-06 46.3 25.4 251 18-280 6-298 (302)
32 PF04789 DUF621: Protein of un 97.3 0.081 1.8E-06 44.8 21.0 228 36-280 34-294 (305)
33 KOG3577 Smoothened and related 97.3 0.0018 3.9E-08 61.4 9.5 165 10-176 221-409 (556)
34 PF03402 V1R: Vomeronasal orga 97.2 0.0029 6.3E-08 54.0 9.1 218 47-268 8-256 (265)
35 PF10326 7TM_GPCR_Str: Serpent 97.1 0.0012 2.6E-08 58.2 5.9 248 21-278 4-306 (307)
36 PF02117 7TM_GPCR_Sra: Serpent 96.9 0.26 5.7E-06 43.8 26.0 39 75-113 97-135 (328)
37 PF03125 Sre: C. elegans Sre G 96.8 0.4 8.6E-06 43.4 24.4 35 80-114 124-158 (365)
38 PF10316 7TM_GPCR_Srbc: Serpen 96.2 0.74 1.6E-05 39.7 19.7 95 18-112 8-114 (273)
39 PF06681 DUF1182: Protein of u 94.8 0.18 3.8E-06 40.9 7.6 101 19-119 44-157 (226)
40 PF02175 7TM_GPCR_Srb: Serpent 91.4 7.6 0.00016 32.5 18.1 37 75-111 81-117 (236)
41 PF10322 7TM_GPCR_Sru: Serpent 87.3 20 0.00043 31.6 21.3 66 75-140 99-167 (307)
42 PF00001 7tm_1: 7 transmembran 72.3 24 0.00051 29.0 8.0 33 160-192 151-183 (257)
43 PF06454 DUF1084: Protein of u 46.0 2E+02 0.0044 25.0 17.5 28 209-236 204-231 (281)
44 KOG4298 CAP-binding protein co 39.7 83 0.0018 25.3 5.1 60 115-178 138-200 (245)
45 KOG1056 Glutamate-gated metabo 37.2 4.7E+02 0.01 26.9 10.9 64 19-85 562-632 (878)
46 PF11683 DUF3278: Protein of u 31.8 2.2E+02 0.0048 21.3 8.0 17 122-138 36-52 (129)
47 PF00599 Flu_M2: Influenza Mat 30.7 23 0.0005 24.2 0.7 15 254-268 31-45 (97)
48 PF03383 Serpentine_r_xa: Caen 30.4 65 0.0014 25.2 3.2 57 84-140 49-109 (153)
49 PF10325 7TM_GPCR_Srz: Serpent 30.4 3.4E+02 0.0073 23.0 10.3 31 83-113 86-116 (267)
50 PF14802 TMEM192: TMEM192 fami 26.1 4E+02 0.0088 22.5 13.6 34 74-110 50-83 (236)
51 PF05296 TAS2R: Mammalian tast 24.2 3.4E+02 0.0075 23.7 7.1 63 170-232 189-251 (303)
No 1
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=100.00 E-value=8.8e-39 Score=275.49 Aligned_cols=262 Identities=38% Similarity=0.700 Sum_probs=215.3
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh-----cCCCCCccchhhHHH
Q 021325 11 TAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-----GDPSKGFFCSAQGYS 85 (314)
Q Consensus 11 ~~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-----~~~~~~~~C~~~~~~ 85 (314)
+++|.+++..+..+.+++|++|+++++++|...|++|++.++++++++++|++..+..++ ....++..|+++|++
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafl 81 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFL 81 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHH
Confidence 467889999999999999999999999999999999999999999999999997765433 123477899999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcCCCCCCCCceeeecCCCCchHHHHH
Q 021325 86 THFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGRTGKAVHFIT 165 (314)
Q Consensus 86 ~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 165 (314)
.|++..++++|.++||++.|..++++..+.++.+++|++++||+|++.+++++..+.|++.+.|||++++. ..+++..
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~~~~--~~~r~~l 159 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIKPEW--DVWRFAL 159 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeecCCC--cchHHHH
Confidence 99999999999999999999999877667789999999999999999999999988999999999999874 3468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q 021325 166 FYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWL 245 (314)
Q Consensus 166 ~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~~~~~~ 245 (314)
||+|+++++.++.+++....+..++..+ .+.++++++ +.|...++..|+++|++||+|+.++|+.+.++. .+.++
T Consensus 160 fY~Pl~ii~~~~~ilv~i~~~~~y~~~~--~~~sd~~~~-~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~--~~~~l 234 (303)
T PF05462_consen 160 FYIPLWIIIIISAILVGITMRYIYRVIR--NGVSDNKDK-HLKYQLKLVNYPLIFIICWIFATINRIYNFIGK--NPFWL 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHH
Confidence 9999988777666554444433333222 223333322 233344677899999999999999999999874 35789
Q ss_pred HHHHHHhhhhhhHHHHHhhccchhH-HHHHHHHHh
Q 021325 246 TFLDVGTAALMGLFNSIAYGLNSSV-RRAIHERLD 279 (314)
Q Consensus 246 ~~l~~~l~~~~g~~n~iiy~~~~~~-~~~~r~~~~ 279 (314)
.+++..++++||++|+++|+++++. +|-+...+.
T Consensus 235 ~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~ 269 (303)
T PF05462_consen 235 SVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKIL 269 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999865 444444443
No 2
>KOG4219 consensus G protein-coupled receptor [Signal transduction mechanisms]
Probab=99.98 E-value=8.5e-32 Score=231.50 Aligned_cols=267 Identities=15% Similarity=0.191 Sum_probs=201.6
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh-------cCCC--CCccch
Q 021325 10 LTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-------GDPS--KGFFCS 80 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-------~~~~--~~~~C~ 80 (314)
+...+.....+.+.++.+++++||++|+++....|++|+..|.+++|||+||++.+++... ...| |..+|+
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~ 109 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCR 109 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceee
Confidence 4567788888899999999999999999999999999999999999999999999877442 2333 899999
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC--chhhhhhhhhhHhhHHHHHHHHHHHhcCC----CCC---CCCce-
Q 021325 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGND----HRH---LGVWC- 150 (314)
Q Consensus 81 ~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~---~~~~C- 150 (314)
+..++......+|++.|.++|+|||.++++|.. -.++..+..++.+|..+++.++|.....+ |+. +...|
T Consensus 110 f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~ 189 (423)
T KOG4219|consen 110 FVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCV 189 (423)
T ss_pred eccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEE
Confidence 999999999999999999999999999988743 23567789999999999999998776432 221 12334
Q ss_pred --eeec--CCC---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCc---hHhHHHHHHHhhhh
Q 021325 151 --WTQT--GRT---------GKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSD---RAYQFDMKALNRWG 214 (314)
Q Consensus 151 --~~~~--~~~---------~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~---~~~~~~~k~~~~~~ 214 (314)
|.+. ... +....+..+++|++++ ...|..+.++++..+. .++..+ ++.+..+|.++.+.
T Consensus 190 ~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl----~~~Yt~iav~LW~~~~-~gd~~d~~~~~~kak~K~vkmli 264 (423)
T KOG4219|consen 190 TAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVL----GLAYTVIAVTLWGRRI-PGDQQDRKHEQLKAKKKVVKMLI 264 (423)
T ss_pred EecccccCCcchhhhhhcceeeeehhHHHHHHHHHH----HHHHHHHHHHHHhccC-ccchhchhhHHHHHHHHHHHHHH
Confidence 4333 110 1122334455565544 4778888888876542 222222 34455567788887
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC----CchHHHHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHhhh
Q 021325 215 YYPLILIGSWAFGTINRIHDFIEPG----HKIFWLTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLDLF 281 (314)
Q Consensus 215 ~~~~~f~i~W~p~~i~~~~~~~~~~----~~~~~~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~~~ 281 (314)
.++..|.+||+|+++..++....++ +-....++....++.++.++||+||++.| ++|..+|+.++.+
T Consensus 265 iVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 265 IVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 8889999999999999888765432 23455667777799999999999999987 7777777776654
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=7e-30 Score=226.62 Aligned_cols=258 Identities=12% Similarity=-0.007 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH--hhccccccchhHHHHHHHHHHHHHHHHhh-------cCCCCCccchhhH
Q 021325 13 HDRRILTALNTGASSLSFVGSGFIVLCYC--LFKELRKFSFKLVFFLALSDMLCSFFSIV-------GDPSKGFFCSAQG 83 (314)
Q Consensus 13 ~~~~~~~~~~~~~~~isl~g~~lvi~~~~--~~~~lr~~~~~~i~~La~adll~~~~~~~-------~~~~~~~~C~~~~ 83 (314)
.+...++.++.++.++|++||+++++++. ..+++|+..|.+++|||+||++.++...+ +.+.|+..|++.+
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~ 109 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVL 109 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHH
Confidence 45667888999999999999999999665 33455889999999999999988765331 1234999999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchh--hhhhhhhhHhhHHHHHHHHHHHhcCCCC-CC-C-CceeeecCCCC
Q 021325 84 YSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVE--DLEAMFHLYVWGTSLVVTVVRSFGNDHR-HL-G-VWCWTQTGRTG 158 (314)
Q Consensus 84 ~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~--~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~-~-~~C~~~~~~~~ 158 (314)
++......+|++.++++|+|||+++++|..... +.....+++.|+.+++.+.|++...+.. .+ + ..|....+...
T Consensus 110 ~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~ 189 (338)
T PHA03234 110 FIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKK 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcch
Confidence 999999999999999999999999987753221 1222445556999999998887543321 11 2 46865432211
Q ss_pred c--hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 021325 159 K--AVH---FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIH 233 (314)
Q Consensus 159 ~--~~~---~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~ 233 (314)
. .+. ...+++-+++++++..++|..+.+++++.. .++++|.+|....++++|++||+|+.+..+.
T Consensus 190 ~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~----------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~ 259 (338)
T PHA03234 190 AYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT----------EKKHKKTLFFIRILILSFLCIQIPNIAILIC 259 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 110 111111234455555588988888876531 1223466776667888999999999887765
Q ss_pred Hhhc---C--CC----chHHHHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHhh
Q 021325 234 DFIE---P--GH----KIFWLTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLDL 280 (314)
Q Consensus 234 ~~~~---~--~~----~~~~~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~~ 280 (314)
+... . +. .......+...++.+++++||++|++.+ ++|+++++.+++
T Consensus 260 ~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~ 316 (338)
T PHA03234 260 EIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQD 316 (338)
T ss_pred HHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 4331 1 11 1122345566699999999999999986 455555554444
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=7e-27 Score=211.99 Aligned_cols=256 Identities=14% Similarity=0.009 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccc--ccchhHHHHHHHHHHHHHHHHh---hcCC----CCCccchhhHHH
Q 021325 15 RRILTALNTGASSLSFVGSGFIVLCYCLFKELR--KFSFKLVFFLALSDMLCSFFSI---VGDP----SKGFFCSAQGYS 85 (314)
Q Consensus 15 ~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr--~~~~~~i~~La~adll~~~~~~---~~~~----~~~~~C~~~~~~ 85 (314)
+....+++.++.++|++||+++++++...++.| +..+.+++|||++|++..+... .... .++..|++.++.
T Consensus 32 ~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~~~~~~~~g~~~Ck~~~~l 111 (409)
T PHA03235 32 RTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLSNQGLLSGSVAGCKFASLL 111 (409)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCeehhHHHH
Confidence 446777788899999999999999876544433 4567889999999998643311 1121 246899999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhcCCc---hhhhhhhhhhHhhHHHHHHHHHHHhcCC------CC---CCCCceeee
Q 021325 86 THFFCVASFLWTTTIAFTLHRTVVQHKTD---VEDLEAMFHLYVWGTSLVVTVVRSFGND------HR---HLGVWCWTQ 153 (314)
Q Consensus 86 ~~~~~~~s~~~l~~ia~~~y~~i~~~~~~---~~~~~~~~~~~~W~~~~~~~~~~~~~~~------~~---~~~~~C~~~ 153 (314)
...+..+|++.+++||+|||.+++++... .++.....++++|+.+++.++|+....+ +. .....|...
T Consensus 112 ~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~ 191 (409)
T PHA03235 112 YYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIY 191 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEe
Confidence 99999999999999999999999776322 2344557788899999999998653211 11 112468543
Q ss_pred cCCCC-c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 021325 154 TGRTG-K----AVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGT 228 (314)
Q Consensus 154 ~~~~~-~----~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~ 228 (314)
...+. . .+.+..+.+-+++++++...+|..+.+++++..+ ++++|..+.+..++++|++||+|+.
T Consensus 192 ~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~----------~~~~k~~~~v~iivv~F~iCWlPy~ 261 (409)
T PHA03235 192 FRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY----------KKRSRTLTFVCILLLSFLCLQTPFV 261 (409)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hcchhhhhhHHHHHHHHHHHHhHHH
Confidence 22111 0 1112222222333444455888888888776421 1122445544556778999999998
Q ss_pred HHHHHHhhcC-----C----CchHHHHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHhh
Q 021325 229 INRIHDFIEP-----G----HKIFWLTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLDL 280 (314)
Q Consensus 229 i~~~~~~~~~-----~----~~~~~~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~~ 280 (314)
+..+++.... + +.......+...+..+++++||++|++.+ ++|+++|+.++.
T Consensus 262 v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 262 AIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 8877654311 1 01234556777799999999999999885 666666666554
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=210.81 Aligned_cols=251 Identities=11% Similarity=0.050 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh------c-CCCCCccchhhHHH
Q 021325 13 HDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV------G-DPSKGFFCSAQGYS 85 (314)
Q Consensus 13 ~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~------~-~~~~~~~C~~~~~~ 85 (314)
+........+.++.++|++||+++++++.+.|+ ++..+.++.|||++|++..+.... . ...|+..|++.++.
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP~~i~~~~~~w~~g~~~C~~~~~~ 104 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFPFIIHNDLNEWIFGEFMCKLVLGV 104 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHhHHHH
Confidence 344567788899999999999999988776544 456789999999999986433211 1 23378899999998
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhcCCch---hhhhhhhhhHhhHHHHHHHHHHHhcCCCC--CCCCceeeecCCCCch
Q 021325 86 THFFCVASFLWTTTIAFTLHRTVVQHKTDV---EDLEAMFHLYVWGTSLVVTVVRSFGNDHR--HLGVWCWTQTGRTGKA 160 (314)
Q Consensus 86 ~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~---~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~ 160 (314)
...+..+|.+.++++|+|||.++++|.... .+.....++.+|+.+++.+.|+..+.... +....|.......+..
T Consensus 105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~~~ 184 (323)
T PHA02834 105 YFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFS 184 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccchH
Confidence 888899999999999999999998774321 22334566789999999999887653322 1224685322221111
Q ss_pred H----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 021325 161 V----H----FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRI 232 (314)
Q Consensus 161 ~----~----~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~ 232 (314)
+ . +..|.+|+.+ ...+|.++.++++++++. +++|..|.+..+.++|++||+|+.+..+
T Consensus 185 ~~~~~~~~~~i~~f~iPl~i----i~~~Y~~I~~~l~~~~~~----------~~~k~~k~~~~vv~~F~icWlPy~i~~~ 250 (323)
T PHA02834 185 WSAFFNFEINIFGIVIPLII----LIYCYSKILYTLKNCKNK----------NKTRSIKIILTVVTFTVVFWVPFNIVLF 250 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCc----------ccceEEeehhHHHHHHHHHHhhHHHHHH
Confidence 1 1 2344555544 447888888888764211 1124556666678889999999988877
Q ss_pred HHhhcC-CC-----c--hHH--HHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHH
Q 021325 233 HDFIEP-GH-----K--IFW--LTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERL 278 (314)
Q Consensus 233 ~~~~~~-~~-----~--~~~--~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~ 278 (314)
.....+ +. . ... ...+...++.+++++||++|++.+ ++|+++|+.+
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~ 307 (323)
T PHA02834 251 INSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMF 307 (323)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHH
Confidence 654421 10 0 111 223556689999999999999987 4444444433
No 6
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=99.95 E-value=8e-26 Score=210.46 Aligned_cols=252 Identities=22% Similarity=0.315 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhcCC--CCCc-cchhhHHHHHHHhH
Q 021325 15 RRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDP--SKGF-FCSAQGYSTHFFCV 91 (314)
Q Consensus 15 ~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~--~~~~-~C~~~~~~~~~~~~ 91 (314)
......+..+++++|+++.++.+++|+..|++++..+++..||+++.++.-+.++++.. .++. .|.+.|++.||+.+
T Consensus 319 ~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~L 398 (610)
T KOG4193|consen 319 TLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFL 398 (610)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHHHHHHH
Confidence 44556667899999999999999999999999998899999999998888888887754 3444 89999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-CchhhhhhhhhhHhhHHHHHHHHHHHhcCC-----CCCCCCceeeecCCCCchHHHHH
Q 021325 92 ASFLWTTTIAFTLHRTVVQHK-TDVEDLEAMFHLYVWGTSLVVTVVRSFGND-----HRHLGVWCWTQTGRTGKAVHFIT 165 (314)
Q Consensus 92 ~s~~~l~~ia~~~y~~i~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-----~~~~~~~C~~~~~~~~~~~~~~~ 165 (314)
++|+||..++++.|+.++.-. ....++...|.+++||.|++++++....+. |+.. ..||++.+.. ..+.
T Consensus 399 aaF~Wm~leg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~-~~CWl~~~~~----~~~~ 473 (610)
T KOG4193|consen 399 AAFFWMLLEGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTP-RVCWLDTQNG----FIWS 473 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccC-CceEEecCCc----eEEE
Confidence 999999999999999765432 233444445657999999999998765432 3333 3599998864 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q 021325 166 FYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWL 245 (314)
Q Consensus 166 ~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~~~~~~ 245 (314)
|++|+.+++++|+++++.+.+++.+..........+.+. .+..+......++++++|..+... +... ....+
T Consensus 474 F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~L~~lLGlTW~fgi~s----~~~~--~~~v~ 545 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLEN--ISLIRSALALLFLLGLTWIFGIFS----WLPG--TSVVF 545 (610)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH----Hhcc--cchHH
Confidence 999999999999999999988887655443322222222 144555566778899999999886 3332 46778
Q ss_pred HHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHh
Q 021325 246 TFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLD 279 (314)
Q Consensus 246 ~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~ 279 (314)
.+++.++|.+||++.++.||..+ ++|++.|++++
T Consensus 546 ~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 546 AYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999987 44444444444
No 7
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.95 E-value=5.5e-25 Score=200.43 Aligned_cols=254 Identities=14% Similarity=0.146 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHh--h---cCC--CCCccchhhHHHH
Q 021325 14 DRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSI--V---GDP--SKGFFCSAQGYST 86 (314)
Q Consensus 14 ~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~--~---~~~--~~~~~C~~~~~~~ 86 (314)
....+..++.+++++|++||++++++.. .|++|+..+.+++|||++|++..+... . ... .++..|++.++..
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~~~~W~fg~~~Ck~~~~l~ 175 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFDQWIFGDFMCKVISASY 175 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhHHHHH
Confidence 3456778899999999999999997755 478888899999999999998754321 1 122 3888999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhcCCc----hhhhhhhhhhHhhHHHHHHHHHHHhcCCC--------C-C---CCCce
Q 021325 87 HFFCVASFLWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSFGNDH--------R-H---LGVWC 150 (314)
Q Consensus 87 ~~~~~~s~~~l~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--------~-~---~~~~C 150 (314)
..+..++++.++++++|||++++++... ..+.....++.+|+.+++++.|+....+. + + ....|
T Consensus 176 ~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C 255 (417)
T PHA02638 176 YIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQC 255 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCee
Confidence 9999999999999999999999877432 22334467788999999999998764211 1 1 12467
Q ss_pred eeecCCCC---chH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHH
Q 021325 151 WTQTGRTG---KAV----HFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGS 223 (314)
Q Consensus 151 ~~~~~~~~---~~~----~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~ 223 (314)
....+... ..+ .+.....-+++++++..++|.++.+++++.++ ++++|.+|.+..+.++|++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~----------~~k~k~~rli~~ivi~f~lc 325 (417)
T PHA02638 256 TLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK----------SKKTKSIIIVSIIIICSLIC 325 (417)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cccchhhhhHHHHHHHHHHH
Confidence 54322111 111 11111122334455555889888888865321 11235566667788899999
Q ss_pred HHHHHHHHHHHhhcCC---------C-----chHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhhh
Q 021325 224 WAFGTINRIHDFIEPG---------H-----KIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDLF 281 (314)
Q Consensus 224 W~p~~i~~~~~~~~~~---------~-----~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~~ 281 (314)
|+|+.+..++...+.. . .......+...++.+++++||++|++.. +++|+.+.+.
T Consensus 326 W~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~---~~FR~~l~~~ 394 (417)
T PHA02638 326 WIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIG---ENFRMHLLMI 394 (417)
T ss_pred HhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---HHHHHHHHHH
Confidence 9999988777654210 0 0112233555689999999999999987 5555555543
No 8
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=99.94 E-value=2.3e-25 Score=190.57 Aligned_cols=252 Identities=20% Similarity=0.267 Sum_probs=189.6
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc--cc----ccchhHHHHHHHHHHHHHHHHhhcC------------
Q 021325 11 TAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKE--LR----KFSFKLVFFLALSDMLCSFFSIVGD------------ 72 (314)
Q Consensus 11 ~~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~--lr----~~~~~~i~~La~adll~~~~~~~~~------------ 72 (314)
-+.|-.+...+....+++|+.|.++.++...+... .+ ....+++..|++||++.+++.++.+
T Consensus 22 l~Fq~~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s 101 (405)
T PF02101_consen 22 LEFQPDAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDS 101 (405)
T ss_pred HhcChhhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCccccc
Confidence 44566777788888899999999888764332111 11 1245789999999999998865321
Q ss_pred --------CCCCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcCCCC
Q 021325 73 --------PSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHR 144 (314)
Q Consensus 73 --------~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 144 (314)
.++...|...+..+|+++.++++|+++.|+|.|+.+ +++. .+...++|+.++|+.|.+++...+..- |.
T Consensus 102 ~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~-~~~a-g~~~~~lYH~~aWgl~~lL~~~Gl~~L-y~ 178 (405)
T PF02101_consen 102 ISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVI-RRSA-GRSTIWLYHMMAWGLPALLCAEGLAML-YY 178 (405)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee-eccC-CCcchhHHHHHHHHHHHHHHHhcccee-ec
Confidence 124489999999999999999999999999999998 4432 234467999999999999998776543 33
Q ss_pred CCCCceeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHh-hhhhHHHHHHHH
Q 021325 145 HLGVWCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALN-RWGYYPLILIGS 223 (314)
Q Consensus 145 ~~~~~C~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~f~i~ 223 (314)
++...|.-+.+ +....+...|+|++++++.|.++|.+..+++....+.+++..++++++..+.+| |+..+.++|.+|
T Consensus 179 Ps~~~Ce~~l~--~alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iC 256 (405)
T PF02101_consen 179 PSISRCESGLE--HALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYIC 256 (405)
T ss_pred CCHHhhhhhhh--hcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445742222 346678899999999999999999999999888777777777666665555555 777789999999
Q ss_pred HHHHHHHHHHHhh---cCC----------CchHHHHHHHHHhhhhhhHHHHHhh-ccc
Q 021325 224 WAFGTINRIHDFI---EPG----------HKIFWLTFLDVGTAALMGLFNSIAY-GLN 267 (314)
Q Consensus 224 W~p~~i~~~~~~~---~~~----------~~~~~~~~l~~~l~~~~g~~n~iiy-~~~ 267 (314)
|+|..++.++-+. .++ ......|++.+++|++||++|.++| +.+
T Consensus 257 WlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay~gWt 314 (405)
T PF02101_consen 257 WLPNIINGSLLFYLEMQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAYYGWT 314 (405)
T ss_pred hhhhhHhHHHHHHhhcccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999765432 211 1235788999999999999999998 544
No 9
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.93 E-value=5.4e-24 Score=181.55 Aligned_cols=233 Identities=17% Similarity=0.196 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh-------c--CCCCCccchhhHHHHHHHhHhHHHHHHHHHH
Q 021325 32 GSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-------G--DPSKGFFCSAQGYSTHFFCVASFLWTTTIAF 102 (314)
Q Consensus 32 g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-------~--~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~ 102 (314)
||++++.++.+.|++|+..+.++.|||++|++.++...+ . ...++..|+..+++...+..++.+.++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999998865332 1 2347799999999999999999999999999
Q ss_pred HHHHHHhhcCCch----hhhhhhhhhHhhHHHHHHHHHHHhcCC-CC--CC-CCceeeecCCCC-chHHHHHHHHHHHHH
Q 021325 103 TLHRTVVQHKTDV----EDLEAMFHLYVWGTSLVVTVVRSFGND-HR--HL-GVWCWTQTGRTG-KAVHFITFYAPLWGA 173 (314)
Q Consensus 103 ~~y~~i~~~~~~~----~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~--~~-~~~C~~~~~~~~-~~~~~~~~~~p~~~~ 173 (314)
|||.++.+|.... ++..+..++.+|..+++.+.++..+.+ .. +. ...|+.+..... .........+..+++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999998764432 345668888999999999999977632 11 21 357988776542 122222222333333
Q ss_pred HHHHHHHHHHHHHHHHhhccccccC----CchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC--chHHHHH
Q 021325 174 ILYNGFTYFQVIRMLNNATRVAVGM----SDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH--KIFWLTF 247 (314)
Q Consensus 174 ~~~~~~~y~~i~~~~~~~~~~~~~~----~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~--~~~~~~~ 247 (314)
+.+..++|..+.++++++.+..... .+++.++++|..+.+....++|++||+|+.+..+.....++. .......
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~ 240 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFY 240 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHH
T ss_pred eeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHH
Confidence 4444466777776666655432221 123334456666777778889999999999998888876664 4667778
Q ss_pred HHHHhhhhhhHHHHHhh
Q 021325 248 LDVGTAALMGLFNSIAY 264 (314)
Q Consensus 248 l~~~l~~~~g~~n~iiy 264 (314)
+...+..+++++||++|
T Consensus 241 ~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 241 ISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEC
Confidence 88889999999999998
No 10
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.93 E-value=5.7e-24 Score=189.82 Aligned_cols=259 Identities=12% Similarity=0.082 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh------cC--CCCCccchhhH
Q 021325 12 AHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV------GD--PSKGFFCSAQG 83 (314)
Q Consensus 12 ~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~------~~--~~~~~~C~~~~ 83 (314)
++........+.+++++|++||++++++.... ++|++.+.++.|||++|++.++.... .. ..++..|+..+
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 115 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVS 115 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 34455677788889999999999999887766 88899999999999999987654221 11 23788999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhcCCc----hhhhhhhhhhHhhHHHHHHHHHHHhcCCCC--CCCCceeeecCCC
Q 021325 84 YSTHFFCVASFLWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSFGNDHR--HLGVWCWTQTGRT 157 (314)
Q Consensus 84 ~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~C~~~~~~~ 157 (314)
+.......++.+.++++|+|||.++.+|.+. ..+.......+.|..+++.+.|+....... .....|....+..
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~ 195 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNK 195 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCc
Confidence 9999999999999999999999999876432 234455677788999998888877654432 2235675554422
Q ss_pred CchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 021325 158 GKAVHF----ITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIH 233 (314)
Q Consensus 158 ~~~~~~----~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~ 233 (314)
...+.. .......+++..+...+|..+.+++++.++ .++++|..|.+...+++|++||+|+.+..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~---------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~ 266 (335)
T PHA03087 196 TMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK---------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266 (335)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------chhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 111222344445555778888877765421 1123466777777889999999999887655
Q ss_pred Hhhc-----CCCc----hHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhhhhh
Q 021325 234 DFIE-----PGHK----IFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDLFWP 283 (314)
Q Consensus 234 ~~~~-----~~~~----~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~~~~ 283 (314)
.... +... ......+...+..+++++||++|++.+ +++|++.++.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~---~~fr~~~~~~~~ 322 (335)
T PHA03087 267 YSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVS---EFFNKHKKKSLK 322 (335)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcC---HHHHHHHHHHHH
Confidence 4321 1111 122334566688999999999999987 555555555443
No 11
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-26 Score=198.89 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH-------hhcC--CCCCccchhhHH
Q 021325 14 DRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFS-------IVGD--PSKGFFCSAQGY 84 (314)
Q Consensus 14 ~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~-------~~~~--~~~~~~C~~~~~ 84 (314)
|.-.+.++..+++.+.++||++|++.|-..|+|++..|+++++||+||++.++.. ++.. +-|...|.+.-.
T Consensus 29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLa 108 (503)
T KOG4220|consen 29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLA 108 (503)
T ss_pred EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHH
Confidence 3345566677889999999999999999999999999999999999999988652 2333 449999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHhhcCCc----hhhhhhhhhhHhhHHHHHHHHHHHhcCCCCC-----CCCceeeecC
Q 021325 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSFGNDHRH-----LGVWCWTQTG 155 (314)
Q Consensus 85 ~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~C~~~~~ 155 (314)
+-++..-+|++.++.|++|||+.+.+|..+ +.+.....++.+|++++++-.|.+..|.|-. ..+.|.++.-
T Consensus 109 lDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFl 188 (503)
T KOG4220|consen 109 LDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFL 188 (503)
T ss_pred HHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEee
Confidence 999999999999999999999999877543 3455569999999999999888887776531 2367987654
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------------------------cC----------
Q 021325 156 RTGK---AVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAV------------------------GM---------- 198 (314)
Q Consensus 156 ~~~~---~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~------------------------~~---------- 198 (314)
+... -..+..||.|+.++. ++|.+|.+..+++.+... +.
T Consensus 189 snp~iTfGTAiAAFYlPVtiM~----~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~ 264 (503)
T KOG4220|consen 189 SNPAITFGTAIAAFYLPVTIMT----ILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGK 264 (503)
T ss_pred cCceeehhHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccc
Confidence 3221 135778999988877 556666554443110000 00
Q ss_pred ----------------------------CchH------------------------------------------------
Q 021325 199 ----------------------------SDRA------------------------------------------------ 202 (314)
Q Consensus 199 ----------------------------~~~~------------------------------------------------ 202 (314)
++++
T Consensus 265 ~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~ 344 (503)
T KOG4220|consen 265 REPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIP 344 (503)
T ss_pred cccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccc
Confidence 0000
Q ss_pred ----------------------------------------------------------------hHHHHHHHhhhhhHHH
Q 021325 203 ----------------------------------------------------------------YQFDMKALNRWGYYPL 218 (314)
Q Consensus 203 ----------------------------------------------------------------~~~~~k~~~~~~~~~~ 218 (314)
..+++|+.+++..+.+
T Consensus 345 ~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILl 424 (503)
T KOG4220|consen 345 TDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILL 424 (503)
T ss_pred cccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 0123677778888999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhhh
Q 021325 219 ILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDLF 281 (314)
Q Consensus 219 ~f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~~ 281 (314)
+|++||.||.+..+.+.+.++..+..+|-+...+++.|+-+||+.|++-| +.||+.+++.
T Consensus 425 AFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCN---atFrkTfk~l 484 (503)
T KOG4220|consen 425 AFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCN---ATFRKTFKRL 484 (503)
T ss_pred HHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHh---HHHHHHHHHh
Confidence 99999999999988888888888889999999999999999999999888 4444444443
No 12
>KOG4564 consensus Adenylate cyclase-coupled calcitonin receptor [Signal transduction mechanisms]
Probab=99.90 E-value=5.1e-23 Score=184.13 Aligned_cols=249 Identities=18% Similarity=0.202 Sum_probs=188.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhcC---------------------CCCC
Q 021325 18 LTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD---------------------PSKG 76 (314)
Q Consensus 18 ~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~---------------------~~~~ 76 (314)
...+++++..+|++..++.+.++..+|++|...|++..||.++-++-++..++.+ ..+.
T Consensus 147 ~~~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 226 (473)
T KOG4564|consen 147 LKILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNP 226 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 3468899999999999999999999999999999999999999888776654311 1367
Q ss_pred ccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcCCCCCCCCceeeecCC
Q 021325 77 FFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGR 156 (314)
Q Consensus 77 ~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 156 (314)
..|+...++.||+..++++||+++++++|..++......++..+.|.+++||+|++++.+.....-+.+ ...||..++.
T Consensus 227 ~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~-d~~CW~~~~~ 305 (473)
T KOG4564|consen 227 VGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFSERRYFWLYLLIGWGVPAVFVVVWAIVRLYLE-DTGCWDSNDT 305 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeccCccHHHHHHHHhhCCcHHHhhhHHhHheeec-cccccccCCC
Confidence 899999999999999999999999999999987665555778889999999999999999887764333 3369988875
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 021325 157 TGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFI 236 (314)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~ 236 (314)
.. ..+..-+|+++.+++|.+++++|.|.+-++.+..+.....+ .+|.+|...+.+-+|++-.+. ...
T Consensus 306 ~~---~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~~~---y~K~vKaTLvLIPLfGI~~il-------f~~ 372 (473)
T KOG4564|consen 306 GH---IWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASETDQ---YRKLVKATLVLIPLFGIHYIL-------FAF 372 (473)
T ss_pred cc---eEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHHHHHcCCeeEE-------EEe
Confidence 32 35566799999999999999999988766554433333222 246676544444456554221 123
Q ss_pred cCCCc--hHHHHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHhh
Q 021325 237 EPGHK--IFWLTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLDL 280 (314)
Q Consensus 237 ~~~~~--~~~~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~~ 280 (314)
.|++. .....++...+.++||++..++||+.| +++.++||...+
T Consensus 373 ~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r 419 (473)
T KOG4564|consen 373 RPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSR 419 (473)
T ss_pred cCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHh
Confidence 34432 344556778899999999999999987 555555555444
No 13
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.90 E-value=3.5e-25 Score=188.60 Aligned_cols=230 Identities=23% Similarity=0.340 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhcCC--CCC------ccchhhHHHHHH
Q 021325 17 ILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDP--SKG------FFCSAQGYSTHF 88 (314)
Q Consensus 17 ~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~--~~~------~~C~~~~~~~~~ 88 (314)
++..+..+++.+|+++.++++.++...|++|+.++.++.||++++++..+.++.+.. .++ ..|...+.+.||
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy 81 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHY 81 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHH
Confidence 467888999999999999999999999999999999999999999999988776643 122 249999999999
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcC--CCCCCCCceeeecCCCCchHHHHHH
Q 021325 89 FCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGN--DHRHLGVWCWTQTGRTGKAVHFITF 166 (314)
Q Consensus 89 ~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~~~~~~~~ 166 (314)
+.++++.|+.++++|.|..++......++..+.+.+++||.|++++++....+ .|++ ..||++++.. ..+.+
T Consensus 82 ~~la~f~Wm~~~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~--~~CWl~~~~~----~~~~f 155 (242)
T PF00002_consen 82 FFLASFFWMLVEAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGN--DNCWLSNDWG----FIWAF 155 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeeccccccc--ccccccCCCc----eEEEE
Confidence 99999999999999999999766544466778999999999999999876655 3443 4699988543 46788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 021325 167 YAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLT 246 (314)
Q Consensus 167 ~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~~~~~~~ 246 (314)
++|..+++++|.+++..+.+++.++.++.+.. ++++.+++..+.......+++++|+...+. ..++ .......
T Consensus 156 ~~P~~~~l~in~vi~~~v~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~L~~llg~~w~~~~~~----~~~~-~~~~~~~ 228 (242)
T PF00002_consen 156 VGPVLIILLINIVIFILVLRVLVRKSRSSDKS--EKKKRRKKILRASLILLPLLGITWLFGILA----VSDS-VDSLVFQ 228 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecccceecccchhheeeEEeehhhhhhhhhh--hccchhhhHHHHHHHHHHHHHHHheeeeee----eccc-chHHHHH
Confidence 99999999999999998888776654421111 111111125555555667789999997664 2221 2456788
Q ss_pred HHHHHhhhhhhHH
Q 021325 247 FLDVGTAALMGLF 259 (314)
Q Consensus 247 ~l~~~l~~~~g~~ 259 (314)
+++.+++++||++
T Consensus 229 ~lf~i~nslQG~~ 241 (242)
T PF00002_consen 229 YLFAILNSLQGFF 241 (242)
T ss_dssp -------------
T ss_pred HHHHHHHcCccee
Confidence 9999999999986
No 14
>KOG2087 consensus Glycoprotein hormone receptor [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-21 Score=167.55 Aligned_cols=256 Identities=14% Similarity=0.117 Sum_probs=182.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHh-hcC--------------CC-CCccch
Q 021325 17 ILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSI-VGD--------------PS-KGFFCS 80 (314)
Q Consensus 17 ~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~-~~~--------------~~-~~~~C~ 80 (314)
.+.+...+++.+.+.||.+|++.....+...+.+..++.|||++|+++++... +.. .| +...|+
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~ 105 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCP 105 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCc
Confidence 34556677899999999999999888887778888888999999999997633 211 12 778999
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC----chhhhhhhhhhHhhHHHHHHHHHHHhcCC-CCCCCCceeeec-
Q 021325 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT----DVEDLEAMFHLYVWGTSLVVTVVRSFGND-HRHLGVWCWTQT- 154 (314)
Q Consensus 81 ~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~----~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~C~~~~- 154 (314)
..||+..+....+++.++.+++||++.++++.+ ...+......+.+|+.+.+.+..|+.+.. |+. ...|.--.
T Consensus 106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~-~~vClPL~~ 184 (363)
T KOG2087|consen 106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGA-SSVCLPLHI 184 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcc-cceeeeccc
Confidence 999999999999999999999999999987744 12334668888999999999999998754 444 35685322
Q ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 021325 155 GRTGKA-VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIH 233 (314)
Q Consensus 155 ~~~~~~-~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~ 233 (314)
++.... +....+.+--.+.+++...+|.++...+++....... + . .+..++++++++.-.+||.|..+..+.
T Consensus 185 ~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~---~-~---~~~akr~a~LvfTd~icw~Pi~f~~~~ 257 (363)
T KOG2087|consen 185 EEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL---I-S---TSVAKRMAFLVFTDCICWCPIAFFKFS 257 (363)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc---c-h---hhhhhCeeEEEEccccccCchheeeeH
Confidence 221111 2233444444555566667788887776654322111 1 1 245678888888889999999998888
Q ss_pred HhhcCCCchHHHH-HHHHHhhhhhhHHHHHhhccch-hHHHHHHHHHhh
Q 021325 234 DFIEPGHKIFWLT-FLDVGTAALMGLFNSIAYGLNS-SVRRAIHERLDL 280 (314)
Q Consensus 234 ~~~~~~~~~~~~~-~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~~~~ 280 (314)
..++.+-...... .+-..+-+.|+++||+.|++.+ .++++++....+
T Consensus 258 al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k 306 (363)
T KOG2087|consen 258 ALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSK 306 (363)
T ss_pred HhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhh
Confidence 7776543332222 4555688999999999999886 444445444443
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.81 E-value=1e-18 Score=142.88 Aligned_cols=172 Identities=19% Similarity=0.251 Sum_probs=132.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhh-ccccccchhHHHHHHHHHHHHHHHHhhcC---------CCCCccchhhHHHHHHH
Q 021325 20 ALNTGASSLSFVGSGFIVLCYCLF-KELRKFSFKLVFFLALSDMLCSFFSIVGD---------PSKGFFCSAQGYSTHFF 89 (314)
Q Consensus 20 ~~~~~~~~isl~g~~lvi~~~~~~-~~lr~~~~~~i~~La~adll~~~~~~~~~---------~~~~~~C~~~~~~~~~~ 89 (314)
....+++.+|+++.+.++..+... ++.|...+.+++||.++|++.++.+++.+ ..++..|.++|++.|.+
T Consensus 5 ~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g 84 (201)
T PF11710_consen 5 IGSIVISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVG 84 (201)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHH
Confidence 344566777777776666666553 56677888899999999999998876521 23778999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHhhcCCch---h-------hhhhhhhhHhhHHHHHHHHHHHhc---CCCCCCCCceeeecCC
Q 021325 90 CVASFLWTTTIAFTLHRTVVQHKTDV---E-------DLEAMFHLYVWGTSLVVTVVRSFG---NDHRHLGVWCWTQTGR 156 (314)
Q Consensus 90 ~~~s~~~l~~ia~~~y~~i~~~~~~~---~-------~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~C~~~~~~ 156 (314)
..++-+|.+++|++.|+.+++++... + +.......+.|+.|++.+.++..+ +.|++.+.|||++.+.
T Consensus 85 ~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~ 164 (201)
T PF11710_consen 85 DEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRY 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccccCcEEEECCCc
Confidence 99999999999999999998772211 0 111233444557777777766554 5688999999999886
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021325 157 TGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATR 193 (314)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~ 193 (314)
. .+++...++|..+..+.+.++|..++.++||+.+
T Consensus 165 ~--~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 165 E--WYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3 3689999999999999999999999999887643
No 16
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-16 Score=154.04 Aligned_cols=251 Identities=18% Similarity=0.247 Sum_probs=193.5
Q ss_pred hhhhhcccCChhH---HHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 021325 2 AAAAVAGSLTAHD---RRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDPSKGFF 78 (314)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~~~~~~ 78 (314)
..+|+.+.-++.+ ...+.....++..+++..+++.++.....|.+|++.+.+-.+|+.|..+..++++.+..-+++.
T Consensus 2146 gsF~vlmd~s~re~g~~~~l~~~t~a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l~~L~Fv~gi~~nq~~ 2225 (2531)
T KOG4289|consen 2146 GSFAVLMDDSRRENGEALPLKMTTYAAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGLAQLVFVLGINQNQFY 2225 (2531)
T ss_pred eeEEEEEccCcccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhHHHHHhhhhcccCchh
Confidence 3466666665443 3345566667788888888888888888999999999999999999999999999988889999
Q ss_pred chhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcCCCCCCCCceeeecCCCC
Q 021325 79 CSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGRTG 158 (314)
Q Consensus 79 C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 158 (314)
|...+.++||.++++|.|+++.+++.|....... ....+..|++++|++|.+++.+...-. +.||++..++
T Consensus 2226 CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v--~tg~mrfy~~vGwgvPa~itglavgld------DfCwlS~h~~- 2296 (2531)
T KOG4289|consen 2226 CTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENV--DTGPMRFYYLVGWGVPALITGLAVGLD------DFCWLSPHDT- 2296 (2531)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC--CCCceeEEEEeecchhhheeeeeeccc------ceeecccchh-
Confidence 9999999999999999999999999999986532 234566799999999999988776432 6799988764
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 021325 159 KAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEP 238 (314)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~ 238 (314)
.+|.|.+|+.+.++.+...+....+..-.++.+ .. .++...+.++...+..+.....|+.++.+ .++
T Consensus 2297 ---LiWsfagPigl~i~ms~~~~~lsa~vSc~~k~~--~f---~kK~~v~~lq~~fl~llllsatwl~~ll~-----vn~ 2363 (2531)
T KOG4289|consen 2297 ---LIWSFAGPIGLVILMSFYAAALSARVSCHKKYQ--VF---VKKGNVSVLQHSFLLLLLLSATWLLGLLA-----VNP 2363 (2531)
T ss_pred ---eeeeecccceeeehHHHHHHHHHHHHhhhhhhe--ee---eeccchhhhHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 688999999999988888887766543222111 01 11112345555555566677889887764 333
Q ss_pred CCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHh
Q 021325 239 GHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLD 279 (314)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~ 279 (314)
.+..+.++++.++.+||.+..+.||..+ ++.|+.++
T Consensus 2364 --~~l~fhyl~a~~~~lqg~~Vlll~cVl~---~~~raa~~ 2399 (2531)
T KOG4289|consen 2364 --DPLEFHYLFASIIGLQGPFVLLLWCVLN---IEVRAALK 2399 (2531)
T ss_pred --chHHHHHHHHHHHHhhhHHHHHHHhhhc---HHHHHhhc
Confidence 4788999999999999999999999888 66666655
No 17
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=99.68 E-value=7.5e-14 Score=121.88 Aligned_cols=267 Identities=14% Similarity=0.151 Sum_probs=182.0
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhc----C-------------
Q 021325 10 LTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG----D------------- 72 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~----~------------- 72 (314)
++++|.........+.+.++.+.+++++++|+..++..+.+.+.+++++++-++.+++++++ .
T Consensus 3 ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~ 82 (328)
T PF01534_consen 3 FTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTER 82 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCce
Confidence 68999999999999999999999999999999988866788999999999999999887642 0
Q ss_pred -----CCCCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC--chhhhhhhhhhHhhHHHHHHHHHHHhcCCCC-
Q 021325 73 -----PSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGNDHR- 144 (314)
Q Consensus 73 -----~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~- 144 (314)
..++..|.+...+.+|+.+++..|..++++.=|++...+.. ..++...++|+++|++|++.++..+..+..+
T Consensus 83 ~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg 162 (328)
T PF01534_consen 83 ILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDG 162 (328)
T ss_pred eEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhccccc
Confidence 11568999999999999999999999999999999844332 2346667999999999999999888766543
Q ss_pred CC-CCceeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHH
Q 021325 145 HL-GVWCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGS 223 (314)
Q Consensus 145 ~~-~~~C~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~ 223 (314)
|+ .+.|++++.+.. ......++|+.+.+++.......-...+.|.++..+...++++ +-.|.+.++.++.+.+.+-
T Consensus 163 D~ltGiC~Vg~~~~~--~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~-Kl~klm~RiGiFsvly~vp 239 (328)
T PF01534_consen 163 DELTGICFVGNQNPS--ALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTS-KLEKLMIRIGIFSVLYLVP 239 (328)
T ss_pred ccccceeEEeCCCHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchh-hHHHHHHHHHHHHHHHHHH
Confidence 33 478999987643 3456678999887777666555444444443332221111112 2234444555555444444
Q ss_pred HHHHHHHHHHHhhcCC-----------------------------CchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHH
Q 021325 224 WAFGTINRIHDFIEPG-----------------------------HKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAI 274 (314)
Q Consensus 224 W~p~~i~~~~~~~~~~-----------------------------~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~ 274 (314)
..-.....++++.+.+ .++.....+.......-| +-+-.+..+++..+.+
T Consensus 240 ~~~~i~c~~YE~~~~~~W~~~~~~~~c~~~~~p~~~~~~~~~~~~~P~~~vf~Lk~~m~LivG-Itsg~WIwS~KTl~sW 318 (328)
T PF01534_consen 240 ALIVIACHFYEYSNRPQWEESWRDYNCCRLNVPCPSDSCSCCPPSRPSFAVFMLKYFMSLIVG-ITSGFWIWSSKTLESW 318 (328)
T ss_pred HHHHHHHHHHHHHhhHHHhhhcccCcCCccCCCCCCCCCcccccCCcchHHHHHHHHHHHhhc-hheeeeeechHHHHHH
Confidence 4443334444432211 123333444444333333 5556677788777777
Q ss_pred HHHHhh
Q 021325 275 HERLDL 280 (314)
Q Consensus 275 r~~~~~ 280 (314)
|+.++|
T Consensus 319 rr~~~R 324 (328)
T PF01534_consen 319 RRFFRR 324 (328)
T ss_pred HHHHHH
Confidence 766655
No 18
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.66 E-value=1.5e-15 Score=129.99 Aligned_cols=243 Identities=14% Similarity=0.105 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhc------C-CCCCccchhhHHHHHHHhHhHHHHHHH
Q 021325 27 SLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG------D-PSKGFFCSAQGYSTHFFCVASFLWTTT 99 (314)
Q Consensus 27 ~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~------~-~~~~~~C~~~~~~~~~~~~~s~~~l~~ 99 (314)
++|++||+..+....+.|++|++.+.++..+|++|++...+.++. + ..+...|..+.+..+++...+...+++
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~ 81 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDHQITRSECFWQIFFYIFFQCAQSVIMLA 81 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999988775532 1 236679999999999999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHh-cCCC-CCC-CCceeeecCCCCchHHHHHHHHHHHHHHHH
Q 021325 100 IAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSF-GNDH-RHL-GVWCWTQTGRTGKAVHFITFYAPLWGAILY 176 (314)
Q Consensus 100 ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~-~~~-~~~C~~~~~~~~~~~~~~~~~~p~~~~~~~ 176 (314)
+++||+.++..|.++.+.....|....-..|++.+..... +.-+ +++ ...|.......+.....+... ..++-..
T Consensus 82 i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~--~~~inv~ 159 (257)
T PF10320_consen 82 IAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQIWSYS--NIIINVI 159 (257)
T ss_pred HHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecCCcccccCCCccccCccHHHHHHHH--HHHHHHH
Confidence 9999999998776554433333555544555555554332 2222 222 367865554433333332222 1222222
Q ss_pred HHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hcCCC-chHHHHHHHHHhhh
Q 021325 177 NGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDF-IEPGH-KIFWLTFLDVGTAA 254 (314)
Q Consensus 177 ~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~-~~~~~-~~~~~~~l~~~l~~ 254 (314)
..++|.......+++.+. +.+.++|..|++...+.+++.+|.-..+...... .+.+. .......-..++..
T Consensus 160 tvivY~i~~~~~~~k~~~-------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~ 232 (257)
T PF10320_consen 160 TVIVYIITIIIFKRKSRS-------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVN 232 (257)
T ss_pred HHHHHHHHHHHHHHHccc-------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 334455455444443221 1222357788877788888999999666544333 33221 22234444566888
Q ss_pred hhhHHHHHhhccchhHHHHHHHHHhhh
Q 021325 255 LMGLFNSIAYGLNSSVRRAIHERLDLF 281 (314)
Q Consensus 255 ~~g~~n~iiy~~~~~~~~~~r~~~~~~ 281 (314)
.+...|+.+|..++ +|+|+.+++.
T Consensus 233 ~~~s~~ffV~~~~S---~EYR~af~~~ 256 (257)
T PF10320_consen 233 ISYSQNFFVYYWRS---SEYRKAFREL 256 (257)
T ss_pred HHHHHHheEEEEcC---HHHHHHHHHh
Confidence 99999999999998 7777766653
No 19
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.36 E-value=3.7e-10 Score=97.91 Aligned_cols=246 Identities=12% Similarity=0.146 Sum_probs=143.9
Q ss_pred HhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh--------cCCC-CCccchhh-HHHHHHHhHhHH
Q 021325 25 ASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV--------GDPS-KGFFCSAQ-GYSTHFFCVASF 94 (314)
Q Consensus 25 ~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~--------~~~~-~~~~C~~~-~~~~~~~~~~s~ 94 (314)
.+.+|++.|.+++..+.+.|++|+.-+.+-.+.|++|.+.+..++. +.+. ++...... |.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999998888889999999998876542 1122 23234443 778888888899
Q ss_pred HHHHHHHHHHHHHHhhcCCc----hhhhhhhhhhHhhHHHHHHHHHHHhcCC---CCCCCCceeeecCC-C-Cch---HH
Q 021325 95 LWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSFGND---HRHLGVWCWTQTGR-T-GKA---VH 162 (314)
Q Consensus 95 ~~l~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~C~~~~~~-~-~~~---~~ 162 (314)
..-+++|+||+.++..|..+ ..+.....+++.|.++.....++....+ +-+...+-|..+++ . +.. ..
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~~~ 162 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWYFD 162 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhHHH
Confidence 99999999999999766432 2344668888999999877666554322 11223344543221 1 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 021325 163 FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKI 242 (314)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~~~ 242 (314)
+....+-..+....|...++++.+.-++. +..++.++++++++.+-.++....-.++.+.++-+....- .. +.
T Consensus 163 ~~~~~~~~~~~~~lni~t~ikl~~~~~~~-~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~---~~---~~ 235 (274)
T PF10328_consen 163 FYKNFILVIISNILNIITFIKLRKFRKKI-SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPP---LS---SN 235 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc---cc
Confidence 11112222333444455555554433332 1111112222223333334444445566666666554411 11 22
Q ss_pred HHHHHHHHH-hhhhhhHHHHHhhccchhHHHHHHHHHhh
Q 021325 243 FWLTFLDVG-TAALMGLFNSIAYGLNSSVRRAIHERLDL 280 (314)
Q Consensus 243 ~~~~~l~~~-l~~~~g~~n~iiy~~~~~~~~~~r~~~~~ 280 (314)
.|..++... .-.+.-.+|++++...| +++|+.+++
T Consensus 236 ~~~~F~~~t~~w~~~h~~DG~i~l~fN---~~~r~~~~~ 271 (274)
T PF10328_consen 236 RWWQFFCTTFSWVLVHALDGLIMLIFN---SEIRRKIRK 271 (274)
T ss_pred cHHHHHHHHHHHHHHHHhcceeEeEEc---HHHHHHHHh
Confidence 344443333 34556678999998888 666666554
No 20
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.18 E-value=2.9e-08 Score=87.03 Aligned_cols=258 Identities=14% Similarity=0.096 Sum_probs=157.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhh-cccc--ccchhHHHHHHHHHHHHHHHHhh------cCC---CCCccchhhHH
Q 021325 17 ILTALNTGASSLSFVGSGFIVLCYCLF-KELR--KFSFKLVFFLALSDMLCSFFSIV------GDP---SKGFFCSAQGY 84 (314)
Q Consensus 17 ~~~~~~~~~~~isl~g~~lvi~~~~~~-~~lr--~~~~~~i~~La~adll~~~~~~~------~~~---~~~~~C~~~~~ 84 (314)
...++..+..++|++||.+++++.... .|-| ++.+.++.+||++.++....... ..+ ..+..++...+
T Consensus 8 i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (303)
T PF05296_consen 8 IFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDF 87 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHH
Confidence 345666677899999999998887642 2222 37788889999999877654331 122 25567888888
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHhhcCC--------chhhhhhhhhhHhhHHHHHHH--HHHHhcCCC-----CCCCCc
Q 021325 85 STHFFCVASFLWTTTIAFTLHRTVVQHKT--------DVEDLEAMFHLYVWGTSLVVT--VVRSFGNDH-----RHLGVW 149 (314)
Q Consensus 85 ~~~~~~~~s~~~l~~ia~~~y~~i~~~~~--------~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~-----~~~~~~ 149 (314)
.-.+.-..+++..+++++.=+.-|+..+. +-++...+..+.++..++... .+....... ...++.
T Consensus 88 ~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~ 167 (303)
T PF05296_consen 88 LWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNS 167 (303)
T ss_pred HHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcc
Confidence 88888888888888888877766643322 123334466777777777333 332221111 111111
Q ss_pred eeeecCCC-Cch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHH
Q 021325 150 CWTQTGRT-GKA----VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSW 224 (314)
Q Consensus 150 C~~~~~~~-~~~----~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W 224 (314)
.+...++. ... .......+|+.+.+.....+.....||.||.+++..+..|.+.+.+.|++|.+..+.+.|.+++
T Consensus 168 t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~ 247 (303)
T PF05296_consen 168 TSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYF 247 (303)
T ss_pred eEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 111 1124566788777766666777778999998888888888888877888887776666666666
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhh
Q 021325 225 AFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDL 280 (314)
Q Consensus 225 ~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~ 280 (314)
+-..+........++. ....+.......-....+++-.+.| .++|+.+++
T Consensus 248 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~yps~hs~iLIlgn---~KLr~~~~~ 297 (303)
T PF05296_consen 248 LSLILSFLSFFFPENS---IWFWVCEIIIALYPSGHSIILILGN---PKLRQALLK 297 (303)
T ss_pred HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHhcCc---hHHHHHHHH
Confidence 5544432222233321 1233444456667777888888877 444444444
No 21
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.12 E-value=1.2e-08 Score=90.53 Aligned_cols=250 Identities=11% Similarity=-0.016 Sum_probs=145.2
Q ss_pred HHhHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHHHHHHHhhcC------CCCCccc------------hhhHH
Q 021325 24 GASSLSFVGSGFIVLCYCLFKELRK-FSFKLVFFLALSDMLCSFFSIVGD------PSKGFFC------------SAQGY 84 (314)
Q Consensus 24 ~~~~isl~g~~lvi~~~~~~~~lr~-~~~~~i~~La~adll~~~~~~~~~------~~~~~~C------------~~~~~ 84 (314)
+++.+|+++|++.+.+ +..|++|+ +.|.++..+|++|++..+..+... .+.+..| .+...
T Consensus 5 ~~~~~g~~~N~~h~~V-Ltrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIV-LTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhh-cCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 3578899999988765 44578887 678888999999999887644321 1123344 23345
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHhhcCCc------hhhhhhhhhhHhhHHHHHHHHHHHhcCCCC------CCCCcee-
Q 021325 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTD------VEDLEAMFHLYVWGTSLVVTVVRSFGNDHR------HLGVWCW- 151 (314)
Q Consensus 85 ~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~------~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~------~~~~~C~- 151 (314)
+...+--+|.+....+|+.|++++.+|... ..+......+++.+...++..+.....+.. .....|.
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 666677888888899999999999655321 123333555666666666666665443221 1123575
Q ss_pred eecC--CCC------------c--hHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHH
Q 021325 152 TQTG--RTG------------K--AVHFIT-------FYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMK 208 (314)
Q Consensus 152 ~~~~--~~~------------~--~~~~~~-------~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k 208 (314)
.+.+ ... . ...... -.+|.++.. +.-+...+.+|+.++.+++..+++.+++.+
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~----ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~ 239 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLP----ILTILLIIELRKAKKRRKKLSSSKSKKSDR 239 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHH----HHHHHHHHHHHhccHhhhcccccccccccc
Confidence 1111 000 0 001111 223433333 333334444444433332222211112223
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-----chHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhhh
Q 021325 209 ALNRWGYYPLILIGSWAFGTINRIHDFIEPGH-----KIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDLF 281 (314)
Q Consensus 209 ~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~-----~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~~ 281 (314)
..+....+.+.|+++=+|..+..+.+...++. .......+...+...|+..++++|+..+ .++|+..++.
T Consensus 240 tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mS---sqYR~t~~~~ 314 (318)
T PF10324_consen 240 TTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMS---SQYRKTVKKL 314 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhh---HHHHHHHHHH
Confidence 34444556789999999988887776642221 1234556777788999999999999987 5555555543
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.01 E-value=2e-08 Score=87.30 Aligned_cols=249 Identities=10% Similarity=0.082 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHHHHHHHhhcC-------------CCCCccchhhHHHHHH
Q 021325 26 SSLSFVGSGFIVLCYCLFKEL----RKFSFKLVFFLALSDMLCSFFSIVGD-------------PSKGFFCSAQGYSTHF 88 (314)
Q Consensus 26 ~~isl~g~~lvi~~~~~~~~l----r~~~~~~i~~La~adll~~~~~~~~~-------------~~~~~~C~~~~~~~~~ 88 (314)
+.+++.--++++.+..+.|+. +++-.+++..-+++|++..+.+.... ..++..-++.-...++
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 345555566666666655543 35667888999999999887654321 1133344444456666
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhcC-Cch----hhhhhhhhhHhhHHHHHHHHHHHhcCC--CCCCCCceeeecCCCCchH
Q 021325 89 FCVASFLWTTTIAFTLHRTVVQHK-TDV----EDLEAMFHLYVWGTSLVVTVVRSFGND--HRHLGVWCWTQTGRTGKAV 161 (314)
Q Consensus 89 ~~~~s~~~l~~ia~~~y~~i~~~~-~~~----~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~ 161 (314)
.......-...+|++||.++++|. ... +...+...++-|+.|.++.++.+...+ |+..++ .....+.+...
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~--~~~~~d~~~~~ 162 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN--MSLFVDPEFIQ 162 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc--eeeecCHHHHH
Confidence 777788888899999999998775 222 223447788889999999998654433 333322 11111111100
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 021325 162 H-FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH 240 (314)
Q Consensus 162 ~-~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~ 240 (314)
. .....+-..+..+...++|..+...+||+.+..+....++.++|.+......+...++++.-.-+... .....+.+.
T Consensus 163 ~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~-~~~~~~~~~ 241 (283)
T PF10323_consen 163 RNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFS-NYFAQNFNT 241 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccc
Confidence 0 00111112222334456777777777755431111111222222221112111222222222222221 111222221
Q ss_pred c-hHHHHHHHHHhhhhhhHHHHHhhccch-hHHHHHHHH
Q 021325 241 K-IFWLTFLDVGTAALMGLFNSIAYGLNS-SVRRAIHER 277 (314)
Q Consensus 241 ~-~~~~~~l~~~l~~~~g~~n~iiy~~~~-~~~~~~r~~ 277 (314)
. ...+..+....+-..+.+||..-.+.| ++||++++.
T Consensus 242 ~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~ 280 (283)
T PF10323_consen 242 DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRM 280 (283)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHH
Confidence 2 223333666678888999998877666 444444443
No 23
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.00 E-value=5.8e-08 Score=84.93 Aligned_cols=250 Identities=13% Similarity=0.063 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH-hhcC---CCCCccchhhHH----
Q 021325 13 HDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFS-IVGD---PSKGFFCSAQGY---- 84 (314)
Q Consensus 13 ~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~-~~~~---~~~~~~C~~~~~---- 84 (314)
+++..+.+...+.+++..+-.+..+.+....+..|++..++.+.|++.|++..... +... ..|...|+..-+
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i~ 109 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYIM 109 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhhh
Confidence 45666777777777777777777777777666666788999999999999886432 2211 225556655444
Q ss_pred --HHHHHhHhHHHHHHHHHHHHHHHHhhcCCchh----hh--hhhhhhHhhHHHHHHHHHHHhcCCCCCCCCceeeecCC
Q 021325 85 --STHFFCVASFLWTTTIAFTLHRTVVQHKTDVE----DL--EAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGR 156 (314)
Q Consensus 85 --~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~----~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 156 (314)
...-+..++-.....+|+||...+..+..... +. ......+.+++-..+-.+|... +....+|.-++.
T Consensus 110 G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~F----ns~~~sw~fDP~ 185 (313)
T PF10321_consen 110 GCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLF----NSEYMSWFFDPM 185 (313)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccC----CCCcceEecCcc
Confidence 33444455555566888999888754432111 11 1133333444433333333322 222345543221
Q ss_pred -----CCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHH
Q 021325 157 -----TGK----AVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFG 227 (314)
Q Consensus 157 -----~~~----~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~ 227 (314)
+.+ ....+. -.+.......+|..++..++++.+.. .+++..+.++|.+-+..++.+...+.++-+
T Consensus 186 i~~g~~~~~Y~N~~~~~n----N~~~~~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iy 259 (313)
T PF10321_consen 186 IFEGKSPELYSNIPHTFN----NIIVVICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIY 259 (313)
T ss_pred ccCCCCccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 12223344566777766666654432 222333333455555555555555555554
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhhh
Q 021325 228 TINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDLF 281 (314)
Q Consensus 228 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~~ 281 (314)
... +++ .++.|+..+..+.=.+++-.+|+||...| |.+|+.+.+.
T Consensus 260 v~m---~f~---~~p~~~i~~~~~~Wql~~g~~~iIYl~lN---rtIR~~~~k~ 304 (313)
T PF10321_consen 260 VYM---QFF---PPPPWLIIIGQISWQLSHGCPPIIYLTLN---RTIRNSVLKM 304 (313)
T ss_pred Hee---eee---cccHHHHHHHHHHHhccCCccceEEEEEC---HHHHHHHHHH
Confidence 333 222 24567777777777788889999998877 5555555553
No 24
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.95 E-value=1e-06 Score=77.06 Aligned_cols=250 Identities=11% Similarity=0.032 Sum_probs=139.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh-ccccccchhHHHHHHHHHHHHHHHHhhc------C----------C---CCCccch
Q 021325 21 LNTGASSLSFVGSGFIVLCYCLF-KELRKFSFKLVFFLALSDMLCSFFSIVG------D----------P---SKGFFCS 80 (314)
Q Consensus 21 ~~~~~~~isl~g~~lvi~~~~~~-~~lr~~~~~~i~~La~adll~~~~~~~~------~----------~---~~~~~C~ 80 (314)
...+.+.+|++.|.+.+....+. ++.-+....++.|-|+.|++.++..... + + .++..|.
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~ 83 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF 83 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence 45678889999998887776643 3444566678899999999988764321 1 1 1778888
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHHHHhcC-C----------CCCC---
Q 021325 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGN-D----------HRHL--- 146 (314)
Q Consensus 81 ~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~----------~~~~--- 146 (314)
..-...+.+...+.+++..--.+||..+.++.. .++.....++..+..++...+...... + ..++
T Consensus 84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~ 162 (292)
T PF10317_consen 84 FCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNL 162 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCccccc
Confidence 888888888888888888888899999965544 334444555555555655555443321 1 1111
Q ss_pred CCceeeec-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCchHhHHHHHHHhhhhhHHHHHHHHH
Q 021325 147 GVWCWTQT-GRTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRV-AVGMSDRAYQFDMKALNRWGYYPLILIGSW 224 (314)
Q Consensus 147 ~~~C~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W 224 (314)
++. -+.+ .+............-.........+++ ..++++.+.-+. ....++++++.+++.++.+.+...+=.++-
T Consensus 163 ~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~~lP~~~~ 240 (292)
T PF10317_consen 163 ENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIF-FLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQALLPLFFY 240 (292)
T ss_pred ccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 011 1111 111111111111111111111111222 223333332222 223444444444555665555444334566
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccc-hhHHHHH
Q 021325 225 AFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLN-SSVRRAI 274 (314)
Q Consensus 225 ~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~-~~~~~~~ 274 (314)
.|+....+....+.. .....+.+-..+..+-..+||++.... .+.|+.+
T Consensus 241 ~p~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i 290 (292)
T PF10317_consen 241 IPGVIIYFLSQFTGY-EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAI 290 (292)
T ss_pred HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHh
Confidence 666665555454443 345566666677899999999999866 4454444
No 25
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.62 E-value=0.00022 Score=63.31 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhh------------cCC----CCCccc
Q 021325 16 RILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV------------GDP----SKGFFC 79 (314)
Q Consensus 16 ~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~------------~~~----~~~~~C 79 (314)
.....+..+.+++|+..++..++.+...+.+|.....++....++.++.+++.++ .++ .+...|
T Consensus 17 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C 96 (324)
T PF10292_consen 17 RLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRC 96 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHH
Confidence 3344445555666665555555444444444444444555566676766654221 111 156778
Q ss_pred hhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhh---hhhhHhhHHHHHHHHHHHhcCCC-CCCCCceeeecC
Q 021325 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEA---MFHLYVWGTSLVVTVVRSFGNDH-RHLGVWCWTQTG 155 (314)
Q Consensus 80 ~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~C~~~~~ 155 (314)
...-....++...+.....++++||+.+....+.+.++..+ ....+-|..+...........+. ++.-.+|....+
T Consensus 97 ~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~~~ 176 (324)
T PF10292_consen 97 FILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQASSS 176 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEecC
Confidence 88888888999999999999999999988655433322222 22222344444433333332333 222367987655
Q ss_pred C
Q 021325 156 R 156 (314)
Q Consensus 156 ~ 156 (314)
+
T Consensus 177 ~ 177 (324)
T PF10292_consen 177 S 177 (324)
T ss_pred C
Confidence 4
No 26
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=98.61 E-value=1.5e-07 Score=63.86 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHhhhhhhHHHHHhhccch
Q 021325 204 QFDMKALNRWGYYPLILIGSWAFGTINRIHDFI--EPGHKIFWLTFLDVGTAALMGLFNSIAYGLNS 268 (314)
Q Consensus 204 ~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~--~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~ 268 (314)
++.+|.+|.+++|+++++++|+..++.....+. ....++.++..+..+..++||++|.++|+++.
T Consensus 5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~e 71 (76)
T PF11970_consen 5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRE 71 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeec
Confidence 344577889999999999999944444444444 23336789999999999999999999999987
No 27
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.33 E-value=0.00037 Score=60.26 Aligned_cols=239 Identities=12% Similarity=0.031 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHHHHHHHhhcC----CCCCccchhhHHHHHHHhHhHHHHHHHHHH
Q 021325 28 LSFVGSGFIVLCYCLFKELRK-FSFKLVFFLALSDMLCSFFSIVGD----PSKGFFCSAQGYSTHFFCVASFLWTTTIAF 102 (314)
Q Consensus 28 isl~g~~lvi~~~~~~~~lr~-~~~~~i~~La~adll~~~~~~~~~----~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~ 102 (314)
.|.+|.++.+.....+-+-|| ..-.+++.+.++++...+..++-. .+-+..|.+..-+..-...+--.-.+|++.
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~n~~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~r 82 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWRDNDINWWPVWCDISTKLIIGSSVGIPAASLCIMR 82 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666655545555 445566999999999888766532 235589999988777777777777778888
Q ss_pred HHHHHHhhcCC-----chhhhhhhhhhHhhHHHHHHHHHHHhc--CCCC-CCCCceeeecCCCCchHHHHHHHHHHHHHH
Q 021325 103 TLHRTVVQHKT-----DVEDLEAMFHLYVWGTSLVVTVVRSFG--NDHR-HLGVWCWTQTGRTGKAVHFITFYAPLWGAI 174 (314)
Q Consensus 103 ~~y~~i~~~~~-----~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~-~~~~~C~~~~~~~~~~~~~~~~~~p~~~~~ 174 (314)
++|.....+.. +.++....=..+++|+|++.+.+...- +.|+ -+...|.-.... ....+..+++|-.+.-
T Consensus 83 ~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~--s~~~~~l~~iwp~i~~ 160 (283)
T PF02076_consen 83 RLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYP--SWPTIFLFIIWPPIFS 160 (283)
T ss_pred HHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCC--CHHHHHHHHHHHHHHH
Confidence 88864421211 112333366778999999999986653 3343 223448544332 2234555555554444
Q ss_pred HHHHHHHHHHHHHHHhhcccccc---CCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---hhcCC-C-------
Q 021325 175 LYNGFTYFQVIRMLNNATRVAVG---MSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHD---FIEPG-H------- 240 (314)
Q Consensus 175 ~~~~~~y~~i~~~~~~~~~~~~~---~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~---~~~~~-~------- 240 (314)
++..+.-....++..|++++.++ .++.... .+...|+..+..+.+++.+|..+..+.. ...+. +
T Consensus 161 lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~--~~Rf~RL~~la~~~i~~~~P~~i~~~v~n~~~~~~~l~P~~sW~~ 238 (283)
T PF02076_consen 161 LIAAVYAILTLRRFIRRRKQFRDILSSSNSGLN--TSRFFRLLALALVIILIYLPLSIYYLVSNINLSSGPLQPYISWDD 238 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence 34333333333443333222111 1111111 1233355666777788899977765551 11110 0
Q ss_pred -----------chHHHHHHHHHhhhhhhHHHHHhhccchhH
Q 021325 241 -----------KIFWLTFLDVGTAALMGLFNSIAYGLNSSV 270 (314)
Q Consensus 241 -----------~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~ 270 (314)
+......+........+++-++.|++.++.
T Consensus 239 vH~~~~~I~~~~~~~~~~~~~W~~~~~a~~fF~fFG~g~eA 279 (283)
T PF02076_consen 239 VHADWSRIDQYPFAGSVELSRWIPPVSAILFFAFFGFGKEA 279 (283)
T ss_pred HcCCCcceEEecchhHHHHHHHHHHHHHHHhhhhhhCCHHH
Confidence 112222355557777788888888877644
No 28
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.92 E-value=0.0091 Score=51.63 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhhcc--c-cccchhHHHHHHHHHHHHHHHHhh-----cC------------CCCCccchhhHHHH
Q 021325 27 SLSFVGSGFIVLCYCLFKE--L-RKFSFKLVFFLALSDMLCSFFSIV-----GD------------PSKGFFCSAQGYST 86 (314)
Q Consensus 27 ~isl~g~~lvi~~~~~~~~--l-r~~~~~~i~~La~adll~~~~~~~-----~~------------~~~~~~C~~~~~~~ 86 (314)
+.|++-..+++....+.|+ . ++.-.++...=++.+++.-+...+ .. ...+...++.-++.
T Consensus 9 i~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 88 (275)
T PF02118_consen 9 IPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFLQ 88 (275)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHHH
Confidence 3445555666666555555 2 333344443333444443332211 11 12556677777889
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHhhcCCchhhh---hhhhhhHhhHHHHHHHHHHHh
Q 021325 87 HFFCVASFLWTTTIAFTLHRTVVQHKTDVEDL---EAMFHLYVWGTSLVVTVVRSF 139 (314)
Q Consensus 87 ~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~---~~~~~~~~W~~~~~~~~~~~~ 139 (314)
+++..+.......+++||+.++..|....+.. .+...++....|+........
T Consensus 89 ~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~ 144 (275)
T PF02118_consen 89 YYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFI 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHc
Confidence 99999999999999999999997765433322 224556667777766555544
No 29
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.82 E-value=0.0024 Score=56.15 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=119.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHh-hccccccchhHH---HHHHHHHHHHHHHHhhc--CC-----CCCccchhhHHHH
Q 021325 18 LTALNTGASSLSFVGSGFIVLCYCL-FKELRKFSFKLV---FFLALSDMLCSFFSIVG--DP-----SKGFFCSAQGYST 86 (314)
Q Consensus 18 ~~~~~~~~~~isl~g~~lvi~~~~~-~~~lr~~~~~~i---~~La~adll~~~~~~~~--~~-----~~~~~C~~~~~~~ 86 (314)
+...+-+++++|++.|.+.+..... .+++.+....++ +...++|+-.+...-+- -| ..+..|+..+...
T Consensus 11 li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i~~ 90 (303)
T PF10327_consen 11 LINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGISS 90 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCCch
Confidence 4466778899999999999766554 445555444444 44455666655442211 01 1334555544333
Q ss_pred HHHhH-------hHHHHHHHHHHHHHHHHhhcCC--c-hhhhhhhhhhHhhHHHHHHHHHHHhcC-C------CCCCC-C
Q 021325 87 HFFCV-------ASFLWTTTIAFTLHRTVVQHKT--D-VEDLEAMFHLYVWGTSLVVTVVRSFGN-D------HRHLG-V 148 (314)
Q Consensus 87 ~~~~~-------~s~~~l~~ia~~~y~~i~~~~~--~-~~~~~~~~~~~~W~~~~~~~~~~~~~~-~------~~~~~-~ 148 (314)
|+... ...-.+..--+.|+-++.+... . ++.............|.+..+.-...+ + |-++. .
T Consensus 91 h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP 170 (303)
T PF10327_consen 91 HYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYP 170 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence 33332 2222222223344555533221 1 122222444445555555554332221 1 10100 1
Q ss_pred ce--eeec-CC----CCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHH
Q 021325 149 WC--WTQT-GR----TGKAVHFITFYAP---LWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPL 218 (314)
Q Consensus 149 ~C--~~~~-~~----~~~~~~~~~~~~p---~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 218 (314)
.| |+.. ++ +.+.+......+- ..........+...+.+.+++.+ ...++++.++++++++.+.....
T Consensus 171 ~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k---~~iS~~ty~kHk~av~SLi~Q~~ 247 (303)
T PF10327_consen 171 EYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLK---KKISKQTYQKHKEAVRSLIAQFA 247 (303)
T ss_pred chhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHH
Confidence 12 1100 00 0011111111111 11111222233444455554433 24555677777788887777666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccch
Q 021325 219 ILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNS 268 (314)
Q Consensus 219 ~f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~ 268 (314)
+-.+|-+|..........+.+ ..+...........+.+.+|.++-.+.+
T Consensus 248 ~~~i~~~P~~~~~~~~~~~~~-~~q~i~~~~~~~f~~HS~~n~ivli~t~ 296 (303)
T PF10327_consen 248 TSSICILPPFIFVVVVIFEFE-DAQVISEICLAIFSSHSSVNMIVLIITT 296 (303)
T ss_pred HHHHHHHHHHHhhhhheecCC-CcHHHHHHHHHHHHHhhHhhheeeeEcC
Confidence 666777997776544344433 3444555555677888899999998887
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.81 E-value=0.015 Score=50.53 Aligned_cols=245 Identities=11% Similarity=0.033 Sum_probs=118.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHHHHHHHhhc--CCC-----------CCccchhhHHHHH
Q 021325 22 NTGASSLSFVGSGFIVLCYCLFKELRK-FSFKLVFFLALSDMLCSFFSIVG--DPS-----------KGFFCSAQGYSTH 87 (314)
Q Consensus 22 ~~~~~~isl~g~~lvi~~~~~~~~lr~-~~~~~i~~La~adll~~~~~~~~--~~~-----------~~~~C~~~~~~~~ 87 (314)
--+.+++|.+.|-+-+......|+.+- ....+++..|+-|++.++.-+.- +.+ ++...+-..+..+
T Consensus 11 Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~ 90 (310)
T PF10319_consen 11 PKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQH 90 (310)
T ss_pred HHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHH
Confidence 345678888889777666666665544 34456699999999999874421 100 1122222221111
Q ss_pred H------HhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHHHHH-------HHhcC-------------
Q 021325 88 F------FCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVV-------RSFGN------------- 141 (314)
Q Consensus 88 ~------~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~------------- 141 (314)
. +..+|..-+.+==++||+++.+++.-.+....+....+-.+.+..... ...++
T Consensus 91 ~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e 170 (310)
T PF10319_consen 91 LLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFRE 170 (310)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 1 223333444444569999996664433333343333332222222211 11111
Q ss_pred CCCCCCC-----ceeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccCCchHhHHHHHHHhhhhh
Q 021325 142 DHRHLGV-----WCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYFQV-IRMLNNATRVAVGMSDRAYQFDMKALNRWGY 215 (314)
Q Consensus 142 ~~~~~~~-----~C~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~i-~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 215 (314)
.||.+.. .+-..+..++...+-+.-.+-..++-...+..|+.. .+..+|..+.....++++++.|++..|.+..
T Consensus 171 ~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL~v 250 (310)
T PF10319_consen 171 VYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKALIV 250 (310)
T ss_pred HhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHHHH
Confidence 2443221 111111111111121111111111112222333333 2223333334445566666666777776655
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccc
Q 021325 216 YPL-ILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLN 267 (314)
Q Consensus 216 ~~~-~f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~ 267 (314)
..+ =..++..|-.+.-....++-+ ...|......+-.+.=.++||+.-.+.
T Consensus 251 QT~IPi~vsf~Pc~~~wy~pif~i~-~~~~~n~~~~iAls~FPf~DPlAii~~ 302 (310)
T PF10319_consen 251 QTVIPICVSFSPCVLSWYGPIFGID-LGRWNNYFSVIALSAFPFLDPLAIILC 302 (310)
T ss_pred HHHhHHHHhhccHHHHHhHHHHcCC-hhHHHHHHHHHHHHHccccCchHhhee
Confidence 322 245777777766333333433 557888888888888899999766544
No 31
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=97.38 E-value=0.084 Score=46.34 Aligned_cols=251 Identities=14% Similarity=0.037 Sum_probs=125.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHH----HHHHHHHHHhh--------cCC-----CCCccc
Q 021325 18 LTALNTGASSLSFVGSGFIVLCYCLFKELR-KFSFKLVFFLAL----SDMLCSFFSIV--------GDP-----SKGFFC 79 (314)
Q Consensus 18 ~~~~~~~~~~isl~g~~lvi~~~~~~~~lr-~~~~~~i~~La~----adll~~~~~~~--------~~~-----~~~~~C 79 (314)
.....-+..++++.-+++.+.....+.+.+ +.....++++.+ .|+..+....+ +.+ +-+...
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 455566778888888888876665543322 233333344444 45554443221 111 123345
Q ss_pred hhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC--chhhhhhhhhhHhhHHHHHHHHHHHhcCCCCC--------CCCc
Q 021325 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRH--------LGVW 149 (314)
Q Consensus 80 ~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--------~~~~ 149 (314)
..+..............+..+=-+||..+..++. ..++....+..+....+.....+....-. ++ +..-
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~p-dQ~~~k~~~~~~~p 164 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSIP-DQEEAKQEVLKKYP 164 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhcc
Confidence 5555555555556666666677799999875532 23344445566666666555555543211 00 0011
Q ss_pred e-----e------eecCCCCchHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhH
Q 021325 150 C-----W------TQTGRTGKAVHFITFYAPLWGA-ILYNG-FTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYY 216 (314)
Q Consensus 150 C-----~------~~~~~~~~~~~~~~~~~p~~~~-~~~~~-~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 216 (314)
| + .-.++.. .. ......... ..... ........++++..+ ...++++.+.++|-++.+.+.
T Consensus 165 c~~~~~~~~~~~fv~~~~~~---~~-~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~--~~~S~~T~k~Qkkfl~~l~iQ 238 (302)
T PF10318_consen 165 CPPPEFFDNPPVFVLSTDSW---YI-LIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK--KTMSKKTRKMQKKFLIALIIQ 238 (302)
T ss_pred CCchhhcCCCCeEEEcCCch---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhCHHHHHHHHHHHHHHHHH
Confidence 2 1 1111111 11 111111111 11111 112222334444333 345556666677777766664
Q ss_pred HHH-HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhh
Q 021325 217 PLI-LIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDL 280 (314)
Q Consensus 217 ~~~-f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~ 280 (314)
..+ +.+.-.|..........+. ..+....+...+....|...-++..+.+ +.+|+.+.+
T Consensus 239 ~~ip~~~l~~P~~~~~~~~~~~~--~~q~~~n~~~~~~~~HG~~sti~mi~~~---~pYR~~~~~ 298 (302)
T PF10318_consen 239 VLIPFIFLFIPLIYFIISIIFGY--YNQALNNISFIIISLHGIASTIVMILVH---KPYRKFLLS 298 (302)
T ss_pred HHHHHHHHhhhHHHHHHHHhccc--cccccchHHHHHHHhccHHHHHHHhhcc---HHHHHHHHH
Confidence 332 2344456554433323332 2344556667788999999999998887 555555444
No 32
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.32 E-value=0.081 Score=44.79 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=120.0
Q ss_pred HHHHHHhhccccc-cchhHHHHHHHHHHHHHHHHh-hcCCC-----------CCccchhhHHHHHHHhHhHHHHHHHHHH
Q 021325 36 IVLCYCLFKELRK-FSFKLVFFLALSDMLCSFFSI-VGDPS-----------KGFFCSAQGYSTHFFCVASFLWTTTIAF 102 (314)
Q Consensus 36 vi~~~~~~~~lr~-~~~~~i~~La~adll~~~~~~-~~~~~-----------~~~~C~~~~~~~~~~~~~s~~~l~~ia~ 102 (314)
.++.+..+++.++ .-..++..|.++-++.+...+ ++.|. .+..-........++-.+-.+..+++|+
T Consensus 34 lv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s~~f~~~Sy~idf~h~siLfsNlviaI 113 (305)
T PF04789_consen 34 LVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQSELFIFMSYLIDFCHYSILFSNLVIAI 113 (305)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555 456677999999988776543 33321 3334455667777888888899999999
Q ss_pred HHHHHHhhcCCchh----hhhhhhhhHhhHHHHHHHHHHHhcC---CCCCC-C---Cceeee-----cCCCCc---hHHH
Q 021325 103 TLHRTVVQHKTDVE----DLEAMFHLYVWGTSLVVTVVRSFGN---DHRHL-G---VWCWTQ-----TGRTGK---AVHF 163 (314)
Q Consensus 103 ~~y~~i~~~~~~~~----~~~~~~~~~~W~~~~~~~~~~~~~~---~~~~~-~---~~C~~~-----~~~~~~---~~~~ 163 (314)
+|......++...+ ...-......|.+|+.+.......+ .|+.. . ..|.-. .+.+.. ....
T Consensus 114 qR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~i 193 (305)
T PF04789_consen 114 QRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEII 193 (305)
T ss_pred hhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHH
Confidence 99888764433211 1122444568999988877766532 23221 1 345322 222211 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-ch
Q 021325 164 ITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH-KI 242 (314)
Q Consensus 164 ~~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~-~~ 242 (314)
.-+.+|+.+. ++|+.+..++-..++.+. ++ .+.+.+++.. ++|++-..+..+.-+-.....+. ..
T Consensus 194 lQ~~IPi~Il-----~iYiAIIiKI~~MKkssL---nK---~Ei~ILKQAi---fIFvlFQ~ss~VFl~~qt~~~~~~tA 259 (305)
T PF04789_consen 194 LQFGIPIFIL-----VIYIAIIIKIIKMKKSSL---NK---NEITILKQAI---FIFVLFQASSCVFLLCQTFKFNVATA 259 (305)
T ss_pred HHHhHHHHHH-----HHHHHHHHHHHHHhhccC---Cc---hhHHHHHHHH---HHHHHHHHHHHHHHhheeeeecchHH
Confidence 4455564432 445555444433322211 11 1234555433 34444445544331111121111 11
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHHhh
Q 021325 243 FWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERLDL 280 (314)
Q Consensus 243 ~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~~~ 280 (314)
+-.-.+-.-..-+-|..-|..+.+.. ||+||.+..
T Consensus 260 FlIKR~iNT~ei~agaatP~ffffTs---~eirk~~s~ 294 (305)
T PF04789_consen 260 FLIKRIINTMEIFAGAATPCFFFFTS---KEIRKLVSS 294 (305)
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEeh---HHHHHHHHh
Confidence 11222222355667888888888888 888877754
No 33
>KOG3577 consensus Smoothened and related G-protein-coupled receptors [Signal transduction mechanisms]
Probab=97.25 E-value=0.0018 Score=61.41 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=118.4
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHhhcC------------C----
Q 021325 10 LTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD------------P---- 73 (314)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~------------~---- 73 (314)
+++++..........-+.......+++.++++..+..++.+.+.+..++.+....++.++.+. +
T Consensus 221 f~~~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~rfryper~i~~l~~c~~~~s~~~~~~~~~g~~~~~c~~~~~~~~ 300 (556)
T KOG3577|consen 221 FSRDENRFARSWIGIWSALCFLSTLFTVLTFLIDRMRFRYPERPIFFLSACYLIVSVGYLSSFVLGSDEIACRATPARLL 300 (556)
T ss_pred cchhhhhhHHHHhhhhhhccchhhHhHHHhhccchhhccCCCcchhhHHHhhhhhccceeecccCCCceeccCCCCCCce
Confidence 456777767776777777777888888888887755555688889999999999988866432 1
Q ss_pred ----CCCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC--chhhhhhhhhhHhhHHHHHHHHHHHhcCCCC-C-
Q 021325 74 ----SKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGNDHR-H- 145 (314)
Q Consensus 74 ----~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~- 145 (314)
..+..|.......+++..++-.|....++..+++...+.. ...+...+.+...|..|.+-++..+.....+ +
T Consensus 301 ~~~~~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~e~~e~~~~~fh~~aw~~p~~~ti~~l~~~~v~~~~ 380 (556)
T KOG3577|consen 301 VQTGLENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGEEAIEAKSSYFHLLAWGLPSVQTILILALNKVDGDE 380 (556)
T ss_pred eecCCCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccceeeehhcCCchHHHHHHHHHHHhcccc
Confidence 1667999999999999999999999999999988844322 2244556999999999999998877755433 2
Q ss_pred CCCceeeecCCCCchHHHHHHHHHHHHHHHH
Q 021325 146 LGVWCWTQTGRTGKAVHFITFYAPLWGAILY 176 (314)
Q Consensus 146 ~~~~C~~~~~~~~~~~~~~~~~~p~~~~~~~ 176 (314)
..+.|...+.+... .-.....|+.+.+++
T Consensus 381 ~~giC~vG~~~~~~--~~~fvl~pl~~~l~i 409 (556)
T KOG3577|consen 381 LSGICFVGNSNPDA--LRGFVLAPLFLYLII 409 (556)
T ss_pred eeEEEecCCCCcch--hceeeecchhhhhhH
Confidence 24678887765431 222334555544433
No 34
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.18 E-value=0.0029 Score=53.99 Aligned_cols=218 Identities=13% Similarity=0.060 Sum_probs=113.6
Q ss_pred cccchhHHHHHHHHHHHHHHHH-hh------c-CCCCCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCc----
Q 021325 47 RKFSFKLVFFLALSDMLCSFFS-IV------G-DPSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTD---- 114 (314)
Q Consensus 47 r~~~~~~i~~La~adll~~~~~-~~------~-~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~---- 114 (314)
.++.+.++.+||+++.+.-+.- ++ + ...+|..|++.-+.--++-..|+..+..+++..-.++ .|...
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItI-SP~~s~w~~ 86 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMAFFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITI-SPSNSRWAE 86 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEE-ecCCchhhh
Confidence 3577788899999998766431 11 1 2348899999999999999999999999998776666 33221
Q ss_pred ----hhhhhhhhhhHhhHHHHHHHHHH---Hhc-CCC-----CCCCCceeeecCCCCch-HHHHHHHHH----HHHHHHH
Q 021325 115 ----VEDLEAMFHLYVWGTSLVVTVVR---SFG-NDH-----RHLGVWCWTQTGRTGKA-VHFITFYAP----LWGAILY 176 (314)
Q Consensus 115 ----~~~~~~~~~~~~W~~~~~~~~~~---~~~-~~~-----~~~~~~C~~~~~~~~~~-~~~~~~~~p----~~~~~~~ 176 (314)
..+.....+...|.+-..+.... ..+ .+. .....+|.....+.... ........| +.++...
T Consensus 87 lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~a 166 (265)
T PF03402_consen 87 LKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIWA 166 (265)
T ss_pred hhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHhh
Confidence 12223356667898877665421 111 111 11225786544332111 111111111 2222222
Q ss_pred HHHHHHHHHHHHHhhcccc-ccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhh
Q 021325 177 NGFTYFQVIRMLNNATRVA-VGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAAL 255 (314)
Q Consensus 177 ~~~~y~~i~~~~~~~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 255 (314)
.+.+-...+||-++.+.-- ...+.+ ...|.|+.+...+.+..|+..+....+..+......+ .+ +......+++..
T Consensus 167 SgyMV~~L~RH~q~VqhIhs~~~s~r-~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~-~~-~~~~~~~~ls~c 243 (265)
T PF03402_consen 167 SGYMVFLLYRHHQQVQHIHSSSLSPR-SSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN-SP-WLLNISVFLSSC 243 (265)
T ss_pred hhhheeeeeecccccccCcCCCCCCC-CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC-Cc-ceeEHHHHHhHH
Confidence 2222222344433322111 111111 2223466766555555555555554443222222222 22 233456667777
Q ss_pred hhHHHHHhhccch
Q 021325 256 MGLFNSIAYGLNS 268 (314)
Q Consensus 256 ~g~~n~iiy~~~~ 268 (314)
-..+-|++-...+
T Consensus 244 fptisPfvLI~~d 256 (265)
T PF03402_consen 244 FPTISPFVLISSD 256 (265)
T ss_pred hHhhChHHhhccC
Confidence 7888888887776
No 35
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.06 E-value=0.0012 Score=58.24 Aligned_cols=248 Identities=7% Similarity=0.001 Sum_probs=119.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhc-cccccchhHHHHHHHHHHHHHHHHhhcCCC-------------------CCccch
Q 021325 21 LNTGASSLSFVGSGFIVLCYCLFK-ELRKFSFKLVFFLALSDMLCSFFSIVGDPS-------------------KGFFCS 80 (314)
Q Consensus 21 ~~~~~~~isl~g~~lvi~~~~~~~-~lr~~~~~~i~~La~adll~~~~~~~~~~~-------------------~~~~C~ 80 (314)
+..++.++|++.|.+.+.....+. +.-....+++...|+.|++.++.-++..|. ++...+
T Consensus 4 ~~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (307)
T PF10326_consen 4 IQYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQ 83 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchhee
Confidence 456788899999988876665433 322344556688888888888764432110 222222
Q ss_pred hhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhhhhhhhHhhHHHHHH-HHHHHh-------cC-----------
Q 021325 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVV-TVVRSF-------GN----------- 141 (314)
Q Consensus 81 ~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~~~-~~~~~~-------~~----------- 141 (314)
.....---+...++.-++.-=++||.++.++... +.........|....++ ...... .+
T Consensus 84 ~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l--~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~ 161 (307)
T PF10326_consen 84 ILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL--RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREEL 161 (307)
T ss_pred ehhhhhhhhHHHHHHHHHhHhhhheeeeccchhh--ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccc
Confidence 2222222223333344444455899999666421 11122233334332222 221110 00
Q ss_pred --CCCCCC-------CceeeecCCCCchHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHH
Q 021325 142 --DHRHLG-------VWCWTQTGRTGKAVHFI------TFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFD 206 (314)
Q Consensus 142 --~~~~~~-------~~C~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~ 206 (314)
+|+.+. ..-|..+++....+.+- ....-+.+...+...|-.++.+++++..+.. +++.++-+
T Consensus 162 ~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~---S~~~~~lq 238 (307)
T PF10326_consen 162 LENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM---SSKTRKLQ 238 (307)
T ss_pred ccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---ChhhHHHH
Confidence 122111 11232222211111111 1112222333334455566666664433221 44555555
Q ss_pred HHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhhhhHHHHHhhccchhHHHHHHHHH
Q 021325 207 MKALNRWGYY-PLILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAIHERL 278 (314)
Q Consensus 207 ~k~~~~~~~~-~~~f~i~W~p~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~n~iiy~~~~~~~~~~r~~~ 278 (314)
+|..+.+... .+=++..-+|..+......++-+ .....-+...+...-..+||++-.+.- |++|+.+
T Consensus 239 ~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~--~~~~~~~~~~~~~~yP~iDpl~~i~~i---k~yR~~i 306 (307)
T PF10326_consen 239 KQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID--LGFFSNIISILISLYPAIDPLPVIFII---KDYRKAI 306 (307)
T ss_pred HHHHHHHHHHhhhhheeeecchhheeeeeccCCC--CCccccHhhhhEEEEeehhhheeeEee---HHHHHhh
Confidence 6666655553 22245667777766444444433 122333455577888899999988776 6666654
No 36
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.94 E-value=0.26 Score=43.84 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=32.8
Q ss_pred CCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC
Q 021325 75 KGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT 113 (314)
Q Consensus 75 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~ 113 (314)
.+..|........++.....+--.++.+||-++...|+.
T Consensus 97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~ 135 (328)
T PF02117_consen 97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKY 135 (328)
T ss_pred ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 667899888888888888888999999999999866643
No 37
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.77 E-value=0.4 Score=43.40 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=25.9
Q ss_pred hhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCc
Q 021325 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTD 114 (314)
Q Consensus 80 ~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~ 114 (314)
.+.+++......+..+.+.++++||..+-..-+.+
T Consensus 124 ~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dY 158 (365)
T PF03125_consen 124 FIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDY 158 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777899999999999987655443
No 38
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=96.18 E-value=0.74 Score=39.75 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=63.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHh-------hcCCC-----CCccchhhHHH
Q 021325 18 LTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSI-------VGDPS-----KGFFCSAQGYS 85 (314)
Q Consensus 18 ~~~~~~~~~~isl~g~~lvi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~-------~~~~~-----~~~~C~~~~~~ 85 (314)
...+..+.+.++...|...+..+...|+.+++.-.++....+.|.+.+.... ..... .+..=...+.-
T Consensus 8 v~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p 87 (273)
T PF10316_consen 8 VSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWP 87 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhh
Confidence 4445556777888889888888887788444555666777899998886532 11111 22222333555
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhcC
Q 021325 86 THFFCVASFLWTTTIAFTLHRTVVQHK 112 (314)
Q Consensus 86 ~~~~~~~s~~~l~~ia~~~y~~i~~~~ 112 (314)
..........-.+.+|+||-.++..|-
T Consensus 88 ~~~~~~iR~~l~~~Ia~dR~~A~~fPI 114 (273)
T PF10316_consen 88 SSNLGSIRSILALIIALDRVFAVYFPI 114 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 555666777788899999999996553
No 39
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.84 E-value=0.18 Score=40.87 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhccc-cccc--------hhHHHHHHHHHHHHHHHHhh---cCC-CCCccchhhHHH
Q 021325 19 TALNTGASSLSFVGSGFIVLCYCLFKEL-RKFS--------FKLVFFLALSDMLCSFFSIV---GDP-SKGFFCSAQGYS 85 (314)
Q Consensus 19 ~~~~~~~~~isl~g~~lvi~~~~~~~~l-r~~~--------~~~i~~La~adll~~~~~~~---~~~-~~~~~C~~~~~~ 85 (314)
.....++...|.+.+.+.+..+.+.|++ |... +.+++++=.-.+=....+.. .++ .+-..|.+.--.
T Consensus 44 i~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~f 123 (226)
T PF06681_consen 44 ITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKNF 123 (226)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHhH
Confidence 3445667777777776665555555543 2222 23344443332222222222 123 266889988777
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHhhcCCchhhhh
Q 021325 86 THFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLE 119 (314)
Q Consensus 86 ~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~~~~ 119 (314)
......+...-..++|+|||+.++.+++......
T Consensus 124 ~S~t~s~~~vip~aVAIyRy~~VV~k~rl~~~f~ 157 (226)
T PF06681_consen 124 TSSTTSCAQVIPVAVAIYRYLIVVLKKRLSVWFV 157 (226)
T ss_pred HHHHhhhhccchhhhhhhhhheeeecccCCchHH
Confidence 6666677777778899999999977654433333
No 40
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.41 E-value=7.6 Score=32.47 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=33.0
Q ss_pred CCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhc
Q 021325 75 KGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQH 111 (314)
Q Consensus 75 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~ 111 (314)
++..|+..-....+++..+.+.-..+++||+.+....
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A 117 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMA 117 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7778888888999999999999999999999999543
No 41
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=87.29 E-value=20 Score=31.59 Aligned_cols=66 Identities=8% Similarity=0.091 Sum_probs=44.3
Q ss_pred CCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhhcCCchh---hhhhhhhhHhhHHHHHHHHHHHhc
Q 021325 75 KGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVE---DLEAMFHLYVWGTSLVVTVVRSFG 140 (314)
Q Consensus 75 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~~~---~~~~~~~~~~W~~~~~~~~~~~~~ 140 (314)
++..=+..-+...++-.++.+.....++-|-..+..|+...+ +..+...-+...+|+..+.+...+
T Consensus 99 Pn~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa 167 (307)
T PF10322_consen 99 PNHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPA 167 (307)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCC
Confidence 445556777788888899999999999999888866654322 222344445566666666665443
No 42
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=72.29 E-value=24 Score=29.03 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021325 160 AVHFITFYAPLWGAILYNGFTYFQVIRMLNNAT 192 (314)
Q Consensus 160 ~~~~~~~~~p~~~~~~~~~~~y~~i~~~~~~~~ 192 (314)
......+.+|+.+++..+..++..+.++.++..
T Consensus 151 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~ 183 (257)
T PF00001_consen 151 YFFIVFFILPLIIILICYIRILRKLRRQRKRIK 183 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred cccccccccceeeeeeecccccccccccccccc
Confidence 346778889999999999999999988777643
No 43
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=45.96 E-value=2e+02 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=14.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 021325 209 ALNRWGYYPLILIGSWAFGTINRIHDFI 236 (314)
Q Consensus 209 ~~~~~~~~~~~f~i~W~p~~i~~~~~~~ 236 (314)
.+++...+..+..+|.+--.+..+....
T Consensus 204 kl~~V~~vt~ic~~cF~ir~i~~~~~~~ 231 (281)
T PF06454_consen 204 KLRKVGFVTIICSVCFLIRCIMVLFSAF 231 (281)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555556666665554444333
No 44
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=39.72 E-value=83 Score=25.31 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=37.0
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHhcCCCCCCCCceeeecCCCC---chHHHHHHHHHHHHHHHHHH
Q 021325 115 VEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGRTG---KAVHFITFYAPLWGAILYNG 178 (314)
Q Consensus 115 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~---~~~~~~~~~~p~~~~~~~~~ 178 (314)
+..+...|+=.+|+++.++.++-+.. +..-.||.+....+ ..+.-....+|+.+++.+..
T Consensus 138 PHerlh~yIelaW~FST~iGllLFL~----Ei~llcwvKF~~v~~P~Aa~~st~ilvPvgliFvvFa 200 (245)
T KOG4298|consen 138 PHERLHFYIELAWAFSTVIGLLLFLA----EIVLLCWVKFLPVGYPTAAYISTAILVPVGLIFVVFA 200 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHheeeeecCCCchhhHhhhhhhhhhhHHHHHHH
Confidence 34556689999999998888776543 12345887654322 12333455678776664443
No 45
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.18 E-value=4.7e+02 Score=26.88 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhccc--cccchh-----HHHHHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 021325 19 TALNTGASSLSFVGSGFIVLCYCLFKEL--RKFSFK-----LVFFLALSDMLCSFFSIVGDPSKGFFCSAQGYS 85 (314)
Q Consensus 19 ~~~~~~~~~isl~g~~lvi~~~~~~~~l--r~~~~~-----~i~~La~adll~~~~~~~~~~~~~~~C~~~~~~ 85 (314)
.+.....++++++..++++.+|.++... .+..++ ++.++ .....+.+.++..| .+..|...-.+
T Consensus 562 ~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi--~l~y~~tf~~i~eP-~~~~C~lrr~~ 632 (878)
T KOG1056|consen 562 SIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGI--FLCYASTFFFIAEP-TDISCRLRRTF 632 (878)
T ss_pred cHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHH--HHHHhhhheeEecC-CCceeeEeeee
Confidence 3555667777777777777766654322 233332 22222 21122233344444 55589877443
No 46
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=31.85 E-value=2.2e+02 Score=21.35 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=8.4
Q ss_pred hhhHhhHHHHHHHHHHH
Q 021325 122 FHLYVWGTSLVVTVVRS 138 (314)
Q Consensus 122 ~~~~~W~~~~~~~~~~~ 138 (314)
..+..|.+.++..++++
T Consensus 36 a~i~l~~~~l~~~li~l 52 (129)
T PF11683_consen 36 AFIILFYYSLLLNLISL 52 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555544
No 47
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=30.70 E-value=23 Score=24.18 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=8.0
Q ss_pred hhhhHHHHHhhccch
Q 021325 254 ALMGLFNSIAYGLNS 268 (314)
Q Consensus 254 ~~~g~~n~iiy~~~~ 268 (314)
..-|.+.-+++.+.+
T Consensus 31 ~IiGILHLiLWI~DR 45 (97)
T PF00599_consen 31 NIIGILHLILWILDR 45 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555556665554
No 48
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=30.40 E-value=65 Score=25.16 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHhhcCCc----hhhhhhhhhhHhhHHHHHHHHHHHhc
Q 021325 84 YSTHFFCVASFLWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSFG 140 (314)
Q Consensus 84 ~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~~~~~~~~~~ 140 (314)
....+++...++....|++||-..+.+|..+ .+++.+.|+.+.....++..++|...
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 4667788888899999999998877666433 34566788877777777777778764
No 49
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=30.36 E-value=3.4e+02 Score=23.00 Aligned_cols=31 Identities=6% Similarity=-0.083 Sum_probs=22.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHhhcCC
Q 021325 83 GYSTHFFCVASFLWTTTIAFTLHRTVVQHKT 113 (314)
Q Consensus 83 ~~~~~~~~~~s~~~l~~ia~~~y~~i~~~~~ 113 (314)
....+....+--+.+..+|+.|+.....|+.
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~ 116 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSS 116 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 4455555566667788999999999877753
No 50
>PF14802 TMEM192: TMEM192 family
Probab=26.10 E-value=4e+02 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=22.6
Q ss_pred CCCccchhhHHHHHHHhHhHHHHHHHHHHHHHHHHhh
Q 021325 74 SKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQ 110 (314)
Q Consensus 74 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~~~y~~i~~ 110 (314)
.++.-|.....+. +.=..+|++...+|+|..-..
T Consensus 50 ~~~~~C~~y~iil---y~~v~lW~lt~l~d~y~k~~H 83 (236)
T PF14802_consen 50 PDEDKCDVYFIIL---YLHVALWLLTYLFDRYIKHQH 83 (236)
T ss_pred cccCccchhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555884444333 344569999999999987643
No 51
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=24.17 E-value=3.4e+02 Score=23.73 Aligned_cols=63 Identities=11% Similarity=-0.125 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCchHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 021325 170 LWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRI 232 (314)
Q Consensus 170 ~~~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~W~p~~i~~~ 232 (314)
..+++.+..+....+...++|+.++.+...+..+..+.|+-.+..-..+.|++....+.+..+
T Consensus 189 ~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~ 251 (303)
T PF05296_consen 189 SFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLI 251 (303)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888889999887776554433333333333555566778888887777633
Done!