BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021326
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KR0|A Chain A, A Proteasome Protein
Length = 411
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 11 AMQEILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFP 70
A + L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP
Sbjct: 22 ASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFP 81
Query: 71 HEAVFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
+ F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN ++N P
Sbjct: 82 DDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 135
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 163 GEAISDVTSSSGPVKLEDLQRIFSNI----GPAG---LGLGDILKPDLIMPLIETLPLEQ 215
G S S + P++L DLQ I + + GPAG + L +L P+++ P++ +++
Sbjct: 253 GNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQE 312
Query: 216 RLAPYLPEGQWTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSKYKF 270
RL PYLP G+ P SP F+Q + F+ L +GQ+ + QFG+ +
Sbjct: 313 RLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEA 372
Query: 271 TVLSFLEALEDSVSKLSESEESRQDDKN 298
+EA ++ ++ E+ D K+
Sbjct: 373 ANKGDVEAFAKAMQNNAKPEQKEGDTKD 400
>pdb|2R2Y|A Chain A, Crystal Structure Of The Proteasomal Rpn13 Pru-Domain
Length = 153
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 14 EILLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEA 73
+ L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP +
Sbjct: 24 KYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDC 83
Query: 74 VFEKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRP 123
F++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N P
Sbjct: 84 EFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 134
>pdb|2Z59|A Chain A, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
Length = 109
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 16 LLEFRAGKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVF 75
L+EFRAGKM+ G V PD RKGLV I + + LIHF W DRT VEDD I+FP + F
Sbjct: 2 LVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEF 61
Query: 76 EKVNQA-SGRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121
++V Q SGRVY+LKF ++ F WMQEPK ++D + C VN +N
Sbjct: 62 KRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLN 108
>pdb|2KQZ|A Chain A, Fragment Of Proteasome Protein
Length = 155
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 167 SDVTSSSGPVKLEDLQRIFSNI----GPAG---LGLGDILKPDLIMPLIETLPLEQRLAP 219
S S + P++L DLQ I + + GPAG + L +L P+++ P++ +++RL P
Sbjct: 1 STAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLP 60
Query: 220 YLPEGQWTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSKYKFTVLS 274
YLP G+ P SP F+Q + F+ L +GQ+ + QFG+ +
Sbjct: 61 YLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKG 120
Query: 275 FLEALEDSVSKLSESEESRQDDKN 298
+EA ++ ++ E+ D K+
Sbjct: 121 DVEAFAKAMQNNAKPEQKEGDTKD 144
>pdb|2L5V|A Chain A, Solution Structure Of The C-Terminal Domain Of Hrpn13
Length = 150
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 12/138 (8%)
Query: 173 SGPVKLEDLQRIFSNI----GPAG---LGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQ 225
S P++L DLQ I + + GPAG + L +L P+++ P++ +++RL PYLP G+
Sbjct: 2 SQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGE 61
Query: 226 WTPXXX---XXXXQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPSKYKFTVLSFLEALE 280
P SP F+Q + F+ L +GQ+ + QFG+ + +EA
Sbjct: 62 SLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFA 121
Query: 281 DSVSKLSESEESRQDDKN 298
++ ++ E+ D K+
Sbjct: 122 KAMQNNAKPEQKEGDTKD 139
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 76 EKVNQASGRV--YILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEEEL 132
++V+ GR+ Y+L N + + +FL ++ S L S NYFIN F N +L
Sbjct: 650 QRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 199 LKPDLIMPLIETLPLEQRLAPYLPEGQW 226
LK + P+ TLP+E+ +A L EG+W
Sbjct: 49 LKSGTLFPIPITLPMEKEIAKDLKEGEW 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,779,664
Number of Sequences: 62578
Number of extensions: 360144
Number of successful extensions: 525
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 8
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)