Query 021326
Match_columns 314
No_of_seqs 139 out of 253
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3037 Cell membrane glycopro 100.0 7.9E-72 1.7E-76 523.2 25.3 275 6-281 2-317 (330)
2 PF04683 Proteasom_Rpn13: Prot 100.0 6.6E-38 1.4E-42 247.8 10.9 83 22-104 1-85 (85)
3 PF13919 ASXH: Asx homology do 93.7 0.044 9.5E-07 47.3 2.3 64 192-257 32-104 (138)
4 KOG2857 Predicted MYND Zn-fing 49.9 21 0.00045 31.3 3.5 54 227-286 86-139 (157)
5 PF14974 DUF4511: Domain of un 39.1 53 0.0012 27.2 4.2 55 229-285 12-82 (105)
6 COG3128 PiuC Uncharacterized i 38.5 24 0.00052 32.5 2.3 35 62-106 149-184 (229)
7 PHA00438 hypothetical protein 34.2 31 0.00068 27.2 2.0 42 239-284 24-66 (81)
8 COG1111 MPH1 ERCC4-like helica 34.0 24 0.00053 36.8 1.8 27 61-92 441-481 (542)
9 TIGR01204 bioW 6-carboxyhexano 32.1 1.3E+02 0.0028 28.4 6.1 22 22-44 105-129 (232)
10 KOG2297 Predicted translation 31.6 49 0.0011 32.9 3.3 52 202-253 200-263 (412)
11 TIGR03757 conj_TIGR03757 integ 29.1 63 0.0014 27.1 3.2 51 213-264 32-83 (113)
12 PTZ00283 serine/threonine prot 28.7 67 0.0014 32.7 4.0 36 83-121 455-490 (496)
13 smart00569 L27 domain in recep 28.4 1.2E+02 0.0027 20.8 4.2 24 226-249 20-43 (55)
14 PRK01322 6-carboxyhexanoate--C 26.7 1.8E+02 0.004 27.6 6.1 22 22-44 113-137 (242)
15 PF09454 Vps23_core: Vps23 cor 25.8 1.2E+02 0.0025 22.8 3.9 31 241-285 25-55 (65)
16 PF07511 DUF1525: Protein of u 25.7 95 0.0021 26.1 3.7 51 213-264 31-82 (114)
17 PRK15195 fimbrial chaperone pr 25.5 5.4E+02 0.012 23.8 9.5 78 21-102 25-110 (229)
18 PF06880 DUF1262: Protein of u 24.9 3.9E+02 0.0084 22.2 7.0 55 35-90 3-81 (104)
19 PF08410 DUF1737: Domain of un 24.2 55 0.0012 23.9 1.8 17 107-123 12-28 (54)
20 PF14795 Leucyl-specific: Leuc 22.7 27 0.00059 25.5 -0.1 39 17-56 7-56 (56)
21 PRK13284 flagellar assembly pr 22.7 97 0.0021 26.9 3.3 40 62-106 14-55 (145)
22 cd08806 CARD_CARD14_CARMA2 Cas 22.5 1.9E+02 0.0042 23.2 4.6 43 227-282 32-77 (86)
23 smart00727 STI1 Heat shock cha 22.3 1E+02 0.0022 20.3 2.7 17 230-246 3-19 (41)
24 PRK15188 fimbrial chaperone pr 21.5 6.6E+02 0.014 23.3 9.9 78 21-102 27-112 (228)
25 PF13897 GOLD_2: Golgi-dynamic 21.2 83 0.0018 27.3 2.5 20 81-100 108-132 (136)
26 PRK15233 putative fimbrial cha 20.3 7.3E+02 0.016 23.4 10.6 83 16-102 35-124 (246)
27 PF14913 DPCD: DPCD protein fa 20.2 2.9E+02 0.0063 25.4 5.9 43 47-100 93-135 (194)
No 1
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=100.00 E-value=7.9e-72 Score=523.24 Aligned_cols=275 Identities=43% Similarity=0.693 Sum_probs=217.0
Q ss_pred CcccCCCCcceEEEeceeeEecC--CceeecCCCcEEEEEeCCCCceEEEEeeCCCCccccceeeeCCceEEEEeec-CC
Q 021326 6 TAASPAMQEILLEFRAGKMTFDG--KKVVPDSRKGLVRIARGEHGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQ-AS 82 (314)
Q Consensus 6 ~~~~~~~~~~lv~fkAGk~~~~g--~~V~Pd~rKG~l~l~~~~d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~-~t 82 (314)
+..++.++.+||+||||||.+.| ++|+||+|||+|||.+++|||+||||++|+++.||||+||||+|++|+||++ ||
T Consensus 2 ~~ss~s~~~~lVeFkAGkm~l~~gtk~v~pDprKGli~i~~sddgliHF~WkdR~~g~VEdDlIifPde~eF~kV~qC~t 81 (330)
T KOG3037|consen 2 TESSNSSSSTLVEFKAGKMRLVGGTKLVTPDPRKGLIYIKRSDDGLIHFCWKDRESGNVEDDLIVFPDEAEFKKVDQCKT 81 (330)
T ss_pred ccccccccceEEEEecceEEecCCcceeecccccceEEEeeCCCceEEEEecccCCCCcccceEEccCceeEEECCCCCC
Confidence 34567899999999999999998 9999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHHHhcCCccccccc-ccccCCccccc----------c---------
Q 021326 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFINRPLVFVNEE-ELDASVPLQVS----------E--------- 142 (314)
Q Consensus 83 gRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~kin~~l~~~~~~~~~~-~~~~~~~~~~~----------~--------- 142 (314)
||||+|||+|+.++|||||||+++++|+++|+|||++||+|+...... ........+++ .
T Consensus 82 GRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p~~~~~~~~~~~~~~l~~~~~s~~~~lfgg~~~~~~L~~~ 161 (330)
T KOG3037|consen 82 GRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKPPTSRPLGASGSGSMLNDDSKSQLMQLFGGSGMNDGLEAL 161 (330)
T ss_pred CcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCCCccccccccccccccccccHHHHHhhcCcccccchhhhh
Confidence 999999999999999999999999999999999999999996532100 00000000000 0
Q ss_pred ------ccccCccccCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHhhcCC-----C-CCCcccCCCccchhHhhcC
Q 021326 143 ------DMVEDDVSSRAGNLVVPNLGGEAISDVTSSSGPVKLEDLQRIFSNIGP-----A-GLGLGDILKPDLIMPLIET 210 (314)
Q Consensus 143 ------~~~~~~~ss~~~~~~~~~~~~~~~~~~~s~~~~~~l~~lq~iL~~l~~-----~-~~~L~dvLt~e~l~~lL~~ 210 (314)
.......++.+++...+++.+. .+...++..+...++.++.++.+.+ . -++|..||++++|.++|++
T Consensus 162 ~~e~l~~~~~s~~~s~~~~~~~~t~es~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~vdLa~vL~~e~v~~vl~~ 240 (330)
T KOG3037|consen 162 TVEQLNSLAESNESSLPGNSVPQTPESS-VSGPESPSEPNKEEDVSNSLSTLSPQIGFGASTVDLATVLKPEAVAPVLAN 240 (330)
T ss_pred hHhhhcccccCccccccccccccCcccc-ccCCCCCCccccchhhcccccCCchhccCCccceehhhhcChHHHHHHhhC
Confidence 0000011111111111111110 0111122334455667777777653 2 3899999999999999999
Q ss_pred chHHHhhcCCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHcCccc--ccccCCCcc----cccccHHHHHHHHHH
Q 021326 211 LPLEQRLAPYLPEGQWTPEELLELLQSPPFRQQVDSFTYVLKTGQID--LSQFGVDPS----KYKFTVLSFLEALED 281 (314)
Q Consensus 211 ~~~~~rL~~~LP~~~~t~e~L~~~lrSPQFqQAl~~fs~AL~sG~l~--l~qfGl~~~----~~~~~VeaFl~AI~~ 281 (314)
+.++++|++|||+++...++|.++|+||||+|||++|++||++|+++ +.||||+.+ +..++|++|+++|++
T Consensus 241 ~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL~sgql~~~i~qfgl~~~~~~sa~~g~v~~F~~aL~~ 317 (330)
T KOG3037|consen 241 PGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQALQSGQLGPVICQFGLDLEAVASANEGDVEAFLKALER 317 (330)
T ss_pred cchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHHhcccccchhhhcCCchhhhcccccccHHHHHHHHHh
Confidence 99999999999999988899999999999999999999999999999 999999944 445699999999998
No 2
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=100.00 E-value=6.6e-38 Score=247.77 Aligned_cols=83 Identities=55% Similarity=1.058 Sum_probs=71.7
Q ss_pred eeeEecCCceeecCCCcEEEEEeCCCCceEEEEeeCCC-CccccceeeeCCceEEEEeec-CCCeEEEEEEcCCCceeEE
Q 021326 22 GKMTFDGKKVVPDSRKGLVRIARGEHGLIHFQWLDRTR-NVVEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFL 99 (314)
Q Consensus 22 Gk~~~~g~~V~Pd~rKG~l~l~~~~d~l~hf~W~~R~~-~~~edd~ii~Pgd~~f~~V~~-~tgRVy~LkF~ss~~~~fF 99 (314)
|||+++|++|+|++|||+|+|++++|+|+||||++|++ +.+|+|+||||||++|++|++ +|||||+|||++|+++|||
T Consensus 1 Gk~~~~~~~V~pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~~e~d~il~pg~~~f~~V~~c~tGRVy~LkF~ss~~~~fF 80 (85)
T PF04683_consen 1 GKMDLDGKIVTPDPRKGLLYLYKSEDGLLHFCWKPRDTTGEVEDDLILFPGDATFKKVPQCKTGRVYVLKFKSSDQRYFF 80 (85)
T ss_dssp EEEEEETTEEEE-SS-EEEEEEETTTS-EEEEEEETST---EEEEEEE-TTTEEEEE-TTSSTS-EEEEEETTTT-EEEE
T ss_pred CcEEEeCCEEeECCCCEEEEEEECCCCeEEEEEEEcCcCCCcccceecCCCCeEEEECCcCCCCeEEEEEECCCCccEEE
Confidence 99999999999999999999999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred eccCC
Q 021326 100 WMQEP 104 (314)
Q Consensus 100 WmQe~ 104 (314)
|||||
T Consensus 81 WmQe~ 85 (85)
T PF04683_consen 81 WMQEP 85 (85)
T ss_dssp EE-SS
T ss_pred EecCC
Confidence 99996
No 3
>PF13919 ASXH: Asx homology domain
Probab=93.71 E-value=0.044 Score=47.30 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=49.7
Q ss_pred CCCcccCCCccchhHhhcCchHHHhhcCCCCCCCC------CHHHHH---HHhcChhHHHHHHHHHHHHHcCccc
Q 021326 192 GLGLGDILKPDLIMPLIETLPLEQRLAPYLPEGQW------TPEELL---ELLQSPPFRQQVDSFTYVLKTGQID 257 (314)
Q Consensus 192 ~~~L~dvLt~e~l~~lL~~~~~~~rL~~~LP~~~~------t~e~L~---~~lrSPQFqQAl~~fs~AL~sG~l~ 257 (314)
.++|.+|+++++- ..| .++.+++|+.+||+-.. +...|. ..++|++|+-++..|..-|..|.+.
T Consensus 32 ~~dLr~L~N~~tw-~~L-~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~ 104 (138)
T PF13919_consen 32 NADLRALLNPETW-SCL-PEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFD 104 (138)
T ss_pred ccCHHHHhCHHHH-hcC-CHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCC
Confidence 3566677777777 444 44578999999998632 334455 7899999999999999999999876
No 4
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=49.86 E-value=21 Score=31.28 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=40.7
Q ss_pred CHHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCCcccccccHHHHHHHHHHHhccc
Q 021326 227 TPEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSKL 286 (314)
Q Consensus 227 t~e~L~~~lrSPQFqQAl~~fs~AL~sG~l~l~qfGl~~~~~~~~VeaFl~AI~~~~~k~ 286 (314)
+...|+.+|..|.+|+-+.+.+.++.--+.-+...+.+ -...|+++|...+.+.
T Consensus 86 ssseLrsll~dp~Lr~Li~sid~~~n~~kel~aamqee------lfvefadailq~ve~s 139 (157)
T KOG2857|consen 86 SSSELRSLLEDPHLRNLIESIDELLNIMKELVAAMQEE------LFVEFADAILQQVEPS 139 (157)
T ss_pred chHHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHhcch------HHHHHHHHHHHhhcCC
Confidence 45789999999999999999998887533333444333 3678999999888774
No 5
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=39.12 E-value=53 Score=27.24 Aligned_cols=55 Identities=15% Similarity=0.335 Sum_probs=37.2
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHcC---------------ccc-ccccCCCcccccccHHHHHHHHHHHhcc
Q 021326 229 EELLELLQSPPFRQQVDSFTYVLKTG---------------QID-LSQFGVDPSKYKFTVLSFLEALEDSVSK 285 (314)
Q Consensus 229 e~L~~~lrSPQFqQAl~~fs~AL~sG---------------~l~-l~qfGl~~~~~~~~VeaFl~AI~~~~~k 285 (314)
.+|.+.+++|+..+.++.--..-... ++. ++.+|++.+.. ||..|++.|++..+.
T Consensus 12 ~eil~a~~~peN~~kl~eAk~~agndm~k~mq~v~Pva~qiq~~VIk~yGF~~~~e--G~~~f~~~i~~~e~~ 82 (105)
T PF14974_consen 12 TEILDAFNQPENAAKLEEAKANAGNDMLKMMQFVFPVATQIQMEVIKKYGFPESRE--GVMQFAQLIRELEKD 82 (105)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHHHHHcc
Confidence 46788889998877665322221110 223 68899997654 999999999987654
No 6
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=38.53 E-value=24 Score=32.47 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=26.2
Q ss_pred cccceeeeCCceEEEEeec-CCCeEEEEEEcCCCceeEEeccCCCC
Q 021326 62 VEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTDDRKFFLWMQEPKA 106 (314)
Q Consensus 62 ~edd~ii~Pgd~~f~~V~~-~tgRVy~LkF~ss~~~~fFWmQe~~~ 106 (314)
+.-|+|++|... ..+|.+ +-|+=|. .|||.|.---
T Consensus 149 PAGdLVlypStS-lH~VtPVTRg~R~a---------sffW~qslir 184 (229)
T COG3128 149 PAGDLVLYPSTS-LHEVTPVTRGERFA---------SFFWIQSLIR 184 (229)
T ss_pred cCCCEEEccccc-ceeccccccCceEE---------EeeehHHHhh
Confidence 446999999854 788888 7776443 6999997653
No 7
>PHA00438 hypothetical protein
Probab=34.20 E-value=31 Score=27.15 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHcCccc-ccccCCCcccccccHHHHHHHHHHHhc
Q 021326 239 PFRQQVDSFTYVLKTGQID-LSQFGVDPSKYKFTVLSFLEALEDSVS 284 (314)
Q Consensus 239 QFqQAl~~fs~AL~sG~l~-l~qfGl~~~~~~~~VeaFl~AI~~~~~ 284 (314)
+|-|..=.++++.+||.+. |.+=|+..+ -|.+|+.+++-.+.
T Consensus 24 eyLqvrfNasYl~~sG~i~~lR~~G~SE~----~IaGfl~Gl~yAs~ 66 (81)
T PHA00438 24 EYLQVRFNASYLEQSGEIRLLRQAGYSEA----FIAGFLAGLQYASR 66 (81)
T ss_pred HHHHHHHhHHHHHHhhhHHHHHHcCCcHH----HHHHHHHHHHHHHH
Confidence 4556666789999999999 899888865 58899999875443
No 8
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=33.99 E-value=24 Score=36.80 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=20.6
Q ss_pred ccccceeeeCCceEEEEee--------------cCCCeEEEEEEcC
Q 021326 61 VVEDDQIVFPHEAVFEKVN--------------QASGRVYILKFNT 92 (314)
Q Consensus 61 ~~edd~ii~Pgd~~f~~V~--------------~~tgRVy~LkF~s 92 (314)
+++-|+||| +..|+ ++.||||+|-+..
T Consensus 441 Ip~vDlVif-----YEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 441 IPEVDLVIF-----YEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred CCcccEEEE-----ecCCcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 467899998 55554 2679999999964
No 9
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=32.15 E-value=1.3e+02 Score=28.41 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=16.0
Q ss_pred eeeEec---CCceeecCCCcEEEEEe
Q 021326 22 GKMTFD---GKKVVPDSRKGLVRIAR 44 (314)
Q Consensus 22 Gk~~~~---g~~V~Pd~rKG~l~l~~ 44 (314)
|=|.++ |.++.|+..||+ ++..
T Consensus 105 GA~llda~tG~RLe~d~~RGV-Rvs~ 129 (232)
T TIGR01204 105 GAVLMDIETGERLDEDKEKGV-RVSR 129 (232)
T ss_pred ceEEEecCCCccccCCCCcce-EEEe
Confidence 455566 899999999996 5543
No 10
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.64 E-value=49 Score=32.89 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=41.6
Q ss_pred cchhHhhcCchHHHhhcCCCCCCCCCH------------HHHHHHhcChhHHHHHHHHHHHHHc
Q 021326 202 DLIMPLIETLPLEQRLAPYLPEGQWTP------------EELLELLQSPPFRQQVDSFTYVLKT 253 (314)
Q Consensus 202 e~l~~lL~~~~~~~rL~~~LP~~~~t~------------e~L~~~lrSPQFqQAl~~fs~AL~s 253 (314)
+.|..+|+.-.+-.+|+.++||..++. .+|.+..|.-||.-+..-+..+|++
T Consensus 200 ~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~ 263 (412)
T KOG2297|consen 200 NDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQE 263 (412)
T ss_pred HHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667789999999985543 3477788999999999999999997
No 11
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=29.15 E-value=63 Score=27.14 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=33.4
Q ss_pred HHHhhcCCCCCCCCC-HHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCC
Q 021326 213 LEQRLAPYLPEGQWT-PEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVD 264 (314)
Q Consensus 213 ~~~rL~~~LP~~~~t-~e~L~~~lrSPQFqQAl~~fs~AL~sG~l~l~qfGl~ 264 (314)
+...|...||.+..- ....++.++||++++--..+..|-| |-...-++||.
T Consensus 32 le~~ls~~Lpadp~qA~~~~~~~l~sp~~~~~q~~l~~Ayq-gv~~Aw~lGi~ 83 (113)
T TIGR03757 32 LEAQLSAGLPADPQQAAAQARQRLQSPDWARLQRRLAQAYQ-GVADAWQLGVT 83 (113)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHH-HHHHHHHcCCc
Confidence 567899999987433 3457799999998666555555544 22224556665
No 12
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=28.75 E-value=67 Score=32.72 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCceeEEeccCCCChhhHHHHHHHHHHhc
Q 021326 83 GRVYILKFNTDDRKFFLWMQEPKAEEDSQLCNSVNYFIN 121 (314)
Q Consensus 83 gRVy~LkF~ss~~~~fFWmQe~~~~~D~~~~~kin~~l~ 121 (314)
--||+|.|. .+++ ||.|..+.+.-+.|+.+|++.|.
T Consensus 455 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFK-TGRR--LLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEec-CCcE--EEEecCCchhHHHHHHHHHHhcC
Confidence 479999996 4554 69999999888899999998875
No 13
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=28.40 E-value=1.2e+02 Score=20.75 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.0
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHH
Q 021326 226 WTPEELLELLQSPPFRQQVDSFTY 249 (314)
Q Consensus 226 ~t~e~L~~~lrSPQFqQAl~~fs~ 249 (314)
...+.|+.++++|-|+..+..++.
T Consensus 20 ~~~~~L~~ll~~~~~~all~~hd~ 43 (55)
T smart00569 20 EDLQELRRLLQSPHLQALLKIHDK 43 (55)
T ss_pred ccHHHHHHHHcCHHHHHHHHHHHH
Confidence 357789999999999998887754
No 14
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=26.68 E-value=1.8e+02 Score=27.55 Aligned_cols=22 Identities=32% Similarity=0.865 Sum_probs=15.9
Q ss_pred eeeEec---CCceeecCCCcEEEEEe
Q 021326 22 GKMTFD---GKKVVPDSRKGLVRIAR 44 (314)
Q Consensus 22 Gk~~~~---g~~V~Pd~rKG~l~l~~ 44 (314)
|=|.++ |+++.||+.||+ ++..
T Consensus 113 GA~lld~~tG~RLe~d~~RGV-Rvs~ 137 (242)
T PRK01322 113 GAILLDAISGERLEPDKERGV-RVTN 137 (242)
T ss_pred ceEEEecCCCccccCCCCcce-EEEe
Confidence 455555 889999999996 5543
No 15
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.78 E-value=1.2e+02 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCcccccccCCCcccccccHHHHHHHHHHHhcc
Q 021326 241 RQQVDSFTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDSVSK 285 (314)
Q Consensus 241 qQAl~~fs~AL~sG~l~l~qfGl~~~~~~~~VeaFl~AI~~~~~k 285 (314)
..++-.++.||+.|.+ ++..|++.+++-+++
T Consensus 25 eDtiy~L~~al~~g~I--------------~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 25 EDTIYYLDRALQRGSI--------------DLDTFLKQVRSLARE 55 (65)
T ss_dssp HHHHHHHHHHHHTTSS---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHH
Confidence 4567788999998875 688999998876653
No 16
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.69 E-value=95 Score=26.07 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=34.9
Q ss_pred HHHhhcCCCCCCCCC-HHHHHHHhcChhHHHHHHHHHHHHHcCcccccccCCC
Q 021326 213 LEQRLAPYLPEGQWT-PEELLELLQSPPFRQQVDSFTYVLKTGQIDLSQFGVD 264 (314)
Q Consensus 213 ~~~rL~~~LP~~~~t-~e~L~~~lrSPQFqQAl~~fs~AL~sG~l~l~qfGl~ 264 (314)
+..+|...||....- ....+..|+||.|++--..+..|-+ |-...-++||.
T Consensus 31 le~~ls~~Lpadp~qA~~~~~~rl~s~~~~~~q~~L~~Ayq-gv~~Aw~lgi~ 82 (114)
T PF07511_consen 31 LEAELSAGLPADPQQAEAQARQRLQSPDWQQLQQQLAQAYQ-GVVDAWSLGIT 82 (114)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHcCccHHHHHHHHHHHHH-HHHHHHHhCcc
Confidence 567899999986433 3456799999998887777777755 22224455555
No 17
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=25.55 E-value=5.4e+02 Score=23.78 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=43.7
Q ss_pred ceeeEecCCce-eecCCC-cEEEEEeCC-C-CceEEEEeeCCCCccccceeeeCCceEEEEeecCCCeEEEEEEcC----
Q 021326 21 AGKMTFDGKKV-VPDSRK-GLVRIARGE-H-GLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (314)
Q Consensus 21 AGk~~~~g~~V-~Pd~rK-G~l~l~~~~-d-~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tgRVy~LkF~s---- 92 (314)
|| +.+++++| -+...+ -.|.|.-.+ + -.+-..|.+...+....+||+.|- +.|++.....+..+.+..
T Consensus 25 Ag-i~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPP---lfrl~p~~~q~lRIi~~~~~LP 100 (229)
T PRK15195 25 GG-IALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPP---LFVSEPKSENTLRIIYAGPPLA 100 (229)
T ss_pred ee-EEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 66 55777655 333333 344554433 3 255566997554444468999998 778877222222222222
Q ss_pred CCceeEEecc
Q 021326 93 DDRKFFLWMQ 102 (314)
Q Consensus 93 s~~~~fFWmQ 102 (314)
.++-..|||=
T Consensus 101 ~DrESlf~Ln 110 (229)
T PRK15195 101 ADRESLFWMN 110 (229)
T ss_pred CCeeEEEEEE
Confidence 2567889984
No 18
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=24.90 E-value=3.9e+02 Score=22.22 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCCCceE--EEEeeCCCCcc-------------------ccceeeeCCceEEEEeec---CCCeEEEEEE
Q 021326 35 SRKGLVRIARGEHGLIH--FQWLDRTRNVV-------------------EDDQIVFPHEAVFEKVNQ---ASGRVYILKF 90 (314)
Q Consensus 35 ~rKG~l~l~~~~d~l~h--f~W~~R~~~~~-------------------edd~ii~Pgd~~f~~V~~---~tgRVy~LkF 90 (314)
|--|+|.|. +++.-.. .||.......+ .++-....+.+-|.+|.- .++|-|+++=
T Consensus 3 PnSG~LVIq-Dee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~~ 81 (104)
T PF06880_consen 3 PNSGYLVIQ-DEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIRR 81 (104)
T ss_pred CCceEEEEE-ccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEEe
Confidence 346888776 5555555 88866432211 122233367888999963 8899999985
No 19
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=24.20 E-value=55 Score=23.95 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHhcCC
Q 021326 107 EEDSQLCNSVNYFINRP 123 (314)
Q Consensus 107 ~~D~~~~~kin~~l~~~ 123 (314)
..|.++|+||++.|+..
T Consensus 12 ~d~~~fc~rVt~aL~~G 28 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEG 28 (54)
T ss_pred CChHHHHHHHHHHHHcC
Confidence 45789999999999984
No 20
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=22.71 E-value=27 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEeceeeEecC-CceeecCCCcEEEE----------EeCCCCceEEEEee
Q 021326 17 LEFRAGKMTFDG-KKVVPDSRKGLVRI----------ARGEHGLIHFQWLD 56 (314)
Q Consensus 17 v~fkAGk~~~~g-~~V~Pd~rKG~l~l----------~~~~d~l~hf~W~~ 56 (314)
|+.+-|++.+.. .++.=+-..|.|.+ ...+||-+|| |++
T Consensus 7 VeVeg~rvrL~e~~R~rLel~~~~Ls~ee~~KmGAELR~hedG~~h~-WKP 56 (56)
T PF14795_consen 7 VEVEGERVRLPEPTRIRLELEEGELSLEEVKKMGAELRPHEDGTLHF-WKP 56 (56)
T ss_dssp EEEETTEEE--HHHHHHHT-S-SEEEHHHHHHTT-EEEE-TTSSEEE-EEE
T ss_pred eEEeCCEEEcCcchhheeecccccccHHHHHhhchhcccCCCCeEee-cCC
Confidence 455566665543 44444455565543 3357898887 664
No 21
>PRK13284 flagellar assembly protein FliW; Provisional
Probab=22.66 E-value=97 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=23.7
Q ss_pred cccceeeeCCceEEEEeec-CCCeEEEEEEcCC-CceeEEeccCCCC
Q 021326 62 VEDDQIVFPHEAVFEKVNQ-ASGRVYILKFNTD-DRKFFLWMQEPKA 106 (314)
Q Consensus 62 ~edd~ii~Pgd~~f~~V~~-~tgRVy~LkF~ss-~~~~fFWmQe~~~ 106 (314)
.|+++|.||.-. .- ..=|=|+|.+... ...-|||||+-..
T Consensus 14 ~e~~ii~Fp~Gi-----~GFe~~k~F~L~~~~~~~~~~f~~LQS~dd 55 (145)
T PRK13284 14 DPEKVITFPAGL-----PGFEDCKRFKLFHEEGPPEPTVFWLQSLDD 55 (145)
T ss_pred CccceEECCCCC-----CCCCcccEEEEEecccCCCCCEEEEEeCCC
Confidence 356777776532 22 3345567765322 1367999998876
No 22
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=22.46 E-value=1.9e+02 Score=23.18 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=31.5
Q ss_pred CHHHHHHHhcChhHHHHHHH---HHHHHHcCcccccccCCCcccccccHHHHHHHHHHH
Q 021326 227 TPEELLELLQSPPFRQQVDS---FTYVLKTGQIDLSQFGVDPSKYKFTVLSFLEALEDS 282 (314)
Q Consensus 227 t~e~L~~~lrSPQFqQAl~~---fs~AL~sG~l~l~qfGl~~~~~~~~VeaFl~AI~~~ 282 (314)
+..+..+++++|.|...... |=--|++-+ ..+..+||++|+..
T Consensus 32 ~~~deeeIls~~t~~~r~~k~g~LLDIL~trG-------------~~g~~aFLeSLe~~ 77 (86)
T cd08806 32 DQLDEEEVLHSPRLTNRAMRVGHLLDLLKTRG-------------KNGAIAFLESLKFH 77 (86)
T ss_pred ChhhHHHHHccchHHHHHHHHHHHHHHHHhcC-------------chHHHHHHHHHHHH
Confidence 66789999999999988777 444444411 12899999999843
No 23
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=22.26 E-value=1e+02 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.7
Q ss_pred HHHHHhcChhHHHHHHH
Q 021326 230 ELLELLQSPPFRQQVDS 246 (314)
Q Consensus 230 ~L~~~lrSPQFqQAl~~ 246 (314)
++...+++|+|++.+..
T Consensus 3 ~~~~~l~~P~~~~~l~~ 19 (41)
T smart00727 3 EMALRLQNPQVQSLLQD 19 (41)
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 46677778888887774
No 24
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=21.46 E-value=6.6e+02 Score=23.33 Aligned_cols=78 Identities=13% Similarity=0.348 Sum_probs=47.0
Q ss_pred ceeeEecCCce-eecC-CCcEEEEEeCC-CC-ceEEEEeeCCCCccccceeeeCCceEEEEeecCCCeEEEEEEcC----
Q 021326 21 AGKMTFDGKKV-VPDS-RKGLVRIARGE-HG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT---- 92 (314)
Q Consensus 21 AGk~~~~g~~V-~Pd~-rKG~l~l~~~~-d~-l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tgRVy~LkF~s---- 92 (314)
|| +.+++++| -+.. +-..|.|.-.+ +. .+--.|.+...+.....||+.|- +.|++...+++..+.+..
T Consensus 27 Ag-i~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPP---lfrl~~~~~~~lRI~~~~~~lP 102 (228)
T PRK15188 27 GG-IALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP---LFVIQPKKENILRIMYVGPSLP 102 (228)
T ss_pred ce-EEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCC---eEEECCCCceEEEEEECCCCCC
Confidence 44 56777654 3433 34455665543 32 55567997554444467999998 778877444444444432
Q ss_pred CCceeEEecc
Q 021326 93 DDRKFFLWMQ 102 (314)
Q Consensus 93 s~~~~fFWmQ 102 (314)
.+|-..||+=
T Consensus 103 ~DRESlf~ln 112 (228)
T PRK15188 103 TDRESVFYLN 112 (228)
T ss_pred CCceEEEEEE
Confidence 3577889984
No 25
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=21.15 E-value=83 Score=27.30 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=13.7
Q ss_pred CCCeEEEEEEcCC-----CceeEEe
Q 021326 81 ASGRVYILKFNTD-----DRKFFLW 100 (314)
Q Consensus 81 ~tgRVy~LkF~ss-----~~~~fFW 100 (314)
+.--||+|||.+| +++.+|.
T Consensus 108 ~~~GvYvLkFDNSYS~~rsK~l~Y~ 132 (136)
T PF13897_consen 108 PGPGVYVLKFDNSYSWFRSKKLYYR 132 (136)
T ss_pred CCCeEEEEEeeCcceeEEeeEEEEE
Confidence 4556999999764 4555554
No 26
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.32 E-value=7.3e+02 Score=23.41 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=48.1
Q ss_pred eEEEeceeeEecCCce-eecCCCc-EEEEEeCCCC-ceEEEEeeCCCCccccceeeeCCceEEEEeecCCCeEEEEEEcC
Q 021326 16 LLEFRAGKMTFDGKKV-VPDSRKG-LVRIARGEHG-LIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNT 92 (314)
Q Consensus 16 lv~fkAGk~~~~g~~V-~Pd~rKG-~l~l~~~~d~-l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tgRVy~LkF~s 92 (314)
|...-|| +.+++++| -+...|+ .|.|.-.++. .+-=.|.+...+.....||+.|- +.|++...+....+.+..
T Consensus 35 ~~~a~Ag-i~l~~TRvIy~~~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPP---LfRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 35 LTQKYYG-LRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPP---ILKVESNARTRLKVIPTS 110 (246)
T ss_pred hhheeee-EEeCceEEEEeCCCcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCC---eEEECCCCceEEEEEECC
Confidence 3445566 66888665 4433333 4445443332 33345887655444457999988 778877444444444433
Q ss_pred ----CCceeEEecc
Q 021326 93 ----DDRKFFLWMQ 102 (314)
Q Consensus 93 ----s~~~~fFWmQ 102 (314)
.+|-..||+=
T Consensus 111 ~~LP~DRESlfwln 124 (246)
T PRK15233 111 NLFNKNEESLYWLC 124 (246)
T ss_pred CCCCcCceEEEEEE
Confidence 2677899985
No 27
>PF14913 DPCD: DPCD protein family
Probab=20.19 E-value=2.9e+02 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=29.0
Q ss_pred CCceEEEEeeCCCCccccceeeeCCceEEEEeecCCCeEEEEEEcCCCceeEEe
Q 021326 47 HGLIHFQWLDRTRNVVEDDQIVFPHEAVFEKVNQASGRVYILKFNTDDRKFFLW 100 (314)
Q Consensus 47 d~l~hf~W~~R~~~~~edd~ii~Pgd~~f~~V~~~tgRVy~LkF~ss~~~~fFW 100 (314)
|.-..|+|+=|.=.- |-++..+.|.. ..|..+++ .++.|||==
T Consensus 93 dTk~~fqWRIRNLPY--------P~dvYsVtvd~-~~r~ivvR--TtNKKYyKk 135 (194)
T PF14913_consen 93 DTKTSFQWRIRNLPY--------PKDVYSVTVDE-DERCIVVR--TTNKKYYKK 135 (194)
T ss_pred cCccceEEEEccCCC--------CccceEEEEcC-CCcEEEEE--CcCccceeE
Confidence 455669999987653 45555666666 56788877 567777633
Done!