BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021328
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3E7S8|RPOB_GEOLS DNA-directed RNA polymerase subunit beta OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpoB PE=3
SV=1
Length = 1497
Score = 38.9 bits (89), Expect = 0.051, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 65 WADLLCSGRQSPQSVDVALVFVGRELQSSHISGNKHADLALVDTLKVSFTKSNFSMAFPY 124
W D C+ P + A + +L S ++G + DLAL D L TKS +
Sbjct: 421 WPD--CTILNGPTMLTAAELQNAEQLIGSLLNGTRPVDLALKDRLSSDLTKSLKKLDLKQ 478
Query: 125 IVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEG----ENFLKLADL--HSVHD 178
V E + L E A VAN F + + G E+F+KL DL +D
Sbjct: 479 PVP---ERLLEQLADELNSA------VANAEFFQRDLIAGLELPESFIKLMDLIEQGGYD 529
Query: 179 HLRLRAEKSLKGQADLIVVCYGDT 202
R R E L+ L+ V YGD+
Sbjct: 530 ENRRRIE-GLRRNRMLLEVAYGDS 552
>sp|O27454|CBIH_METTH Probable cobalt-precorrin-3B C(17)-methyltransferase
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=cbiH PE=3 SV=1
Length = 351
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 243 SVQYPSHQELERFLAESVAGNKSANNTGCDEVCQFKSSLFEGILVVSFCFCPFF 296
+V+ P H+ F E+ G S G DE C+F FEG +FC+CPF+
Sbjct: 236 AVETPLHELAREFYEENPLGKAS----GPDENCEFYPCHFEG-QNCAFCYCPFY 284
>sp|O78439|YCF46_GUITH Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia
theta GN=ycf46 PE=3 SV=1
Length = 506
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 154 VAFSESCTVEGENFLKLADLH------SVHDHLRLRAEKSLKGQADLIVVCYGD------ 201
+ F + T+E + L D H SV LR A KSL+ Q+ IV+ D
Sbjct: 87 LEFIDKFTLETPLLVLLKDFHLFLNDISVSRKLRNLA-KSLRNQSKTIVIIASDLTIPLN 145
Query: 202 -TQSMKQPKQPRPE-SEVISELIDSVEKSGAKYTVLYVSDPVRSVQYPSHQELERFLAES 259
+ S+ P P+ SE+ EL+ E G + + V++ Q S +++ R LA+
Sbjct: 146 LSDSITILHFPLPKNSEIKKELLRIQESLGYSLPEHSLDNLVKASQGLSLEKIRRVLAKI 205
Query: 260 VAGNKSANNTGCDEVCQFKSSLFEGILVVSF 290
+A K N D V + K L ++ F
Sbjct: 206 IATYKEINVESLDLVFKEKQQLISQTQILEF 236
>sp|Q8CXP9|GLMU_OCEIH Bifunctional protein GlmU OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=glmU PE=3
SV=1
Length = 455
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 179 HLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVL--Y 236
H L+AE LK + + VV GDT P +E ELI +K+GAK ++L
Sbjct: 81 HAVLQAEDLLKDEKGVTVVACGDT--------PLIRAETFEELIQYHKKTGAKASILTTK 132
Query: 237 VSDPV--------------RSVQYPSHQELERFLAESVAG 262
V +P R V++ E ER + E G
Sbjct: 133 VENPTGYGRVVRNDQDEVERIVEHKDANEGERLIQEINTG 172
>sp|Q96BY6|DOC10_HUMAN Dedicator of cytokinesis protein 10 OS=Homo sapiens GN=DOCK10 PE=1
SV=3
Length = 2186
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 21/191 (10%)
Query: 95 ISGNKHADLALVDTLKVSFTKSNFSMAFPYIVSAGEETMESSLFSEFTEACVDDFKVANV 154
+SG KH +A + T S+ FPY+ + +SS E +D+
Sbjct: 1985 LSGKKHGGVAEQCKRRTILTTSHL---FPYVKKRIQVISQSSTELNPIEVAIDEMSKKVS 2041
Query: 155 AFSESCTVEGENFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYG---DTQSMKQP-KQ 210
++ CT+E + ++L L+L+ S+K A + +T + K P Q
Sbjct: 2042 ELNQLCTMEEVDMIRL--------QLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQ 2093
Query: 211 PRPESEVISELIDS------VEKSGAKYTVLYVSDPVRSVQYPSHQELERFLAESVAGNK 264
+ E+ + D+ V + K L + +RS EL + E + G
Sbjct: 2094 VKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSTVMNEQITGRD 2153
Query: 265 SANNTGCDEVC 275
+ G D+ C
Sbjct: 2154 DLSKRGVDQTC 2164
>sp|B3EL40|ATPG_CHLPB ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain
BS1) GN=atpG PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 184 AEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVI----SELIDSVEKSGAKYTVLYVSD 239
+E+ LKG+ D +VV Y + +S+ P +SEV+ E ++ EK+G+ +Y
Sbjct: 161 SERYLKGEVDKVVVVYNEFKSVLAPVL---KSEVLLPITPEKVEG-EKTGSSIDYIYEPS 216
Query: 240 P--VRSVQYPSH--QELERFLAESVAGNKSANNTGCDEVCQFKSSLFEGILVVSF 290
P + V P H ++ R + ES A ++ T D + L +L +S+
Sbjct: 217 PSAIIDVLVPKHLNTQIWRMMLESNAAEHASRMTAMDSATENAKELMR-VLKISY 270
>sp|B0THS2|PNP_HELMI Polyribonucleotide nucleotidyltransferase OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=pnp PE=3
SV=1
Length = 709
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 122 FPYIVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTV---------EGENFLKLAD 172
FPY + E +ES+ + C + N V EGE+F L+D
Sbjct: 417 FPYTIRLVSEAVESNGSTSMASVCGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFSILSD 476
Query: 173 LHSVHDHLRLRAEKSLKGQADLIVVCYGD-----------TQSMKQPKQPRPESEVISEL 221
+ + DHL + + G AD + D TQ+++Q ++ R ++ ++
Sbjct: 477 IQGMEDHLG-DMDFKVAGTADGVTALQMDIKIKGVNREILTQALQQARKGR--LFILDKM 533
Query: 222 IDSVEKSGAKYT-----VLYVS---DPVRSVQYPSHQELERFLAES 259
+ ++K A+ + ++ +S D +R V P + + + +AE+
Sbjct: 534 LAVIDKPAAEMSPYAPRIITMSIDPDKIREVIGPGGKVINKIIAET 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,379,656
Number of Sequences: 539616
Number of extensions: 4173759
Number of successful extensions: 10941
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10937
Number of HSP's gapped (non-prelim): 22
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)