Query 021328
Match_columns 314
No_of_seqs 24 out of 26
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05827 ATP-synt_S1: Vacuolar 98.4 5.3E-06 1.1E-10 76.4 12.6 170 26-240 1-177 (282)
2 COG3957 Phosphoketolase [Carbo 64.0 79 0.0017 35.1 11.3 123 94-242 536-665 (793)
3 cd01829 SGNH_hydrolase_peri2 S 63.1 61 0.0013 27.3 8.5 51 190-242 58-119 (200)
4 TIGR03649 ergot_EASG ergot alk 63.0 56 0.0012 29.3 8.7 59 190-258 66-124 (285)
5 cd01827 sialate_O-acetylestera 57.7 70 0.0015 26.7 7.9 49 190-238 66-115 (188)
6 cd07203 cPLA2_Fungal_PLB Funga 53.0 18 0.0004 38.3 4.4 70 74-162 377-447 (552)
7 cd01821 Rhamnogalacturan_acety 47.9 1.2E+02 0.0025 25.9 7.8 45 191-236 65-113 (198)
8 smart00022 PLAc Cytoplasmic ph 45.8 23 0.00051 37.3 3.9 48 74-125 388-437 (549)
9 PF04763 DUF562: Protein of un 45.6 93 0.002 28.1 7.0 49 189-242 13-61 (146)
10 PF02402 Lysis_col: Lysis prot 44.4 11 0.00024 28.1 0.9 20 285-304 5-25 (46)
11 PF05368 NmrA: NmrA-like famil 40.6 91 0.002 27.2 6.2 41 191-240 64-104 (233)
12 smart00450 RHOD Rhodanese Homo 38.5 95 0.002 22.3 5.1 35 188-236 53-87 (100)
13 PF00581 Rhodanese: Rhodanese- 37.6 1.6E+02 0.0034 22.1 6.4 43 185-236 61-103 (113)
14 cd00466 DHQase_II Dehydroquina 36.2 73 0.0016 28.4 4.9 52 171-242 24-75 (140)
15 PF00056 Ldh_1_N: lactate/mala 34.7 70 0.0015 27.1 4.4 50 190-242 68-122 (141)
16 PRK05086 malate dehydrogenase; 33.7 74 0.0016 30.6 4.9 48 191-241 69-121 (312)
17 PRK05261 putative phosphoketol 32.7 2E+02 0.0043 32.0 8.4 117 99-242 530-655 (785)
18 PRK13015 3-dehydroquinate dehy 32.0 1E+02 0.0022 27.7 5.1 51 172-242 27-77 (146)
19 PF14792 DNA_pol_B_palm: DNA p 31.6 68 0.0015 26.5 3.8 48 182-235 33-80 (112)
20 PF08915 tRNA-Thr_ED: Archaea- 31.0 63 0.0014 28.7 3.6 42 193-242 37-81 (138)
21 TIGR01763 MalateDH_bact malate 30.9 1.1E+02 0.0024 29.3 5.5 49 191-242 69-122 (305)
22 PF13460 NAD_binding_10: NADH( 30.6 1.9E+02 0.0041 23.9 6.3 42 191-242 60-101 (183)
23 PRK03673 hypothetical protein; 30.6 38 0.00083 34.2 2.5 44 123-173 245-288 (396)
24 KOG3062 RNA polymerase II elon 30.3 1E+02 0.0022 30.3 5.2 44 194-246 3-46 (281)
25 PF13727 CoA_binding_3: CoA-bi 30.1 1.9E+02 0.0041 23.5 6.1 49 166-232 123-171 (175)
26 PF01220 DHquinase_II: Dehydro 29.2 77 0.0017 28.2 3.9 48 171-235 25-72 (140)
27 COG2185 Sbm Methylmalonyl-CoA 28.8 1.6E+02 0.0035 26.3 5.8 44 191-244 63-106 (143)
28 PF08774 VRR_NUC: VRR-NUC doma 28.6 2.9E+02 0.0062 21.6 9.4 51 187-239 44-100 (100)
29 PF10673 DUF2487: Protein of u 28.4 1.1E+02 0.0025 27.1 4.8 75 164-243 24-98 (142)
30 PRK05395 3-dehydroquinate dehy 28.0 1E+02 0.0022 27.7 4.5 52 171-242 26-77 (146)
31 cd01836 FeeA_FeeB_like SGNH_hy 26.3 3.9E+02 0.0084 22.3 9.9 91 133-240 25-115 (191)
32 cd01841 NnaC_like NnaC (CMP-Ne 25.8 1.9E+02 0.0042 23.8 5.5 51 189-240 49-99 (174)
33 cd01832 SGNH_hydrolase_like_1 25.7 2E+02 0.0044 23.8 5.6 48 191-240 67-114 (185)
34 PRK10534 L-threonine aldolase; 25.6 2E+02 0.0043 26.5 6.0 50 172-230 112-161 (333)
35 PF14617 CMS1: U3-containing 9 25.0 87 0.0019 30.0 3.7 74 129-202 54-137 (252)
36 PF13113 DUF3970: Protein of u 24.9 90 0.002 24.5 3.1 35 211-250 9-43 (60)
37 TIGR01088 aroQ 3-dehydroquinat 24.7 1.2E+02 0.0026 27.2 4.2 52 171-242 24-75 (141)
38 cd05290 LDH_3 A subgroup of L- 24.0 1.6E+02 0.0035 28.3 5.4 47 191-240 68-121 (307)
39 COG4320 Uncharacterized protei 23.7 50 0.0011 33.7 1.9 50 15-64 260-330 (410)
40 TIGR01854 lipid_A_lpxH UDP-2,3 23.2 2.9E+02 0.0062 24.9 6.5 41 191-231 30-70 (231)
41 cd01825 SGNH_hydrolase_peri1 S 22.7 1.9E+02 0.0041 23.9 4.9 51 189-240 54-105 (189)
42 TIGR00642 mmCoA_mut_beta methy 22.6 1.9E+02 0.004 31.2 5.9 39 191-240 546-584 (619)
43 TIGR00640 acid_CoA_mut_C methy 22.4 2E+02 0.0043 24.6 5.0 38 191-238 53-90 (132)
44 cd01519 RHOD_HSP67B2 Member of 22.4 2.3E+02 0.0049 21.6 5.0 35 189-237 64-98 (106)
45 PRK05799 coproporphyrinogen II 22.3 5.6E+02 0.012 24.7 8.6 91 128-242 92-192 (374)
46 PF09889 DUF2116: Uncharacteri 21.7 94 0.002 23.9 2.7 29 269-297 18-53 (59)
47 cd05294 LDH-like_MDH_nadp A la 21.7 2.3E+02 0.005 27.1 5.9 50 190-242 71-125 (309)
48 cd04506 SGNH_hydrolase_YpmR_li 21.2 2.1E+02 0.0046 24.2 5.0 48 190-238 67-128 (204)
49 cd01395 HMT_MBD Methyl-CpG bin 21.2 84 0.0018 24.2 2.3 27 151-183 23-49 (60)
50 PF08357 SEFIR: SEFIR domain; 21.1 4.7E+02 0.01 21.5 9.1 100 126-237 6-119 (150)
51 PF14871 GHL6: Hypothetical gl 20.9 4.2E+02 0.009 22.7 6.7 56 173-238 2-65 (132)
52 PF04412 DUF521: Protein of un 20.6 6.9E+02 0.015 25.6 9.2 138 106-265 226-389 (400)
53 cd02071 MM_CoA_mut_B12_BD meth 20.5 1.5E+02 0.0033 24.2 3.9 38 191-238 50-87 (122)
54 COG2194 Predicted membrane-ass 20.1 1.1E+02 0.0023 32.5 3.5 152 78-242 230-456 (555)
55 cd01338 MDH_choloroplast_like 20.0 2.5E+02 0.0054 27.3 5.8 49 190-241 77-131 (322)
No 1
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=98.38 E-value=5.3e-06 Score=76.39 Aligned_cols=170 Identities=23% Similarity=0.267 Sum_probs=106.2
Q ss_pred ccceeeeccCcccc-C--CCCceEEeecChHhHHHHHHhccCccccccCCCCCCCCCcEEEEee-ccccccccccCCCCC
Q 021328 26 TVPAFLWSTHHQKI-S--SNNALNYQTLSPKDLAKAVLTQGGWADLLCSGRQSPQSVDVALVFV-GRELQSSHISGNKHA 101 (314)
Q Consensus 26 t~PAFlWS~~~~~~-~--~~~~VnYqviS~kdLaksVL~e~Gwsn~lcs~~~~~~~~D~al~FI-G~eL~SsDiS~~k~s 101 (314)
|+|+|+||.+ +.. . +...=+=|+.++.++...+-+-++- |.-+ +.+|| =-.|+.+|++..+.
T Consensus 1 t~P~~l~St~-~~~~l~~~~~~~~~~~~s~~~~~~~~~~~l~~----cpsd--------~yl~v~Qpgl~~~Df~~~~~- 66 (282)
T PF05827_consen 1 TVPFFLFSTK-LSPGLPPSIPPSSGQIQSSSSFLSYLKSLLSS----CPSD--------AYLFVNQPGLSASDFTDYGS- 66 (282)
T ss_pred CCCEEEEECC-CcccccccCCCCcCcCccHHHHHHHHHHHHhc----CCCc--------eEEEEecccccHhhcccccc-
Confidence 6899999999 311 1 1111223456666665544444333 3332 67777 88999999997755
Q ss_pred CHHHHHHHHhhhcccccceeeceeeecCCcchh-hhhhhhhHhhhcccCccceEEEecccccCCcccccccchHhHHHHH
Q 021328 102 DLALVDTLKVSFTKSNFSMAFPYIVSAGEETME-SSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADLHSVHDHL 180 (314)
Q Consensus 102 d~alvd~Lk~sf~~S~fSMAfPYVaaS~~~~le-~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l~svqd~l 180 (314)
...--|+.....|..++.||+|.. +.++ +.|...+.+.|+. .+.+|... +.. .+.++++
T Consensus 67 --~~~p~L~~~~~~s~s~~~~~~v~~---~~~~~~~L~~~l~~~c~~--~~~~v~~~------~~~------~~~~~~~- 126 (282)
T PF05827_consen 67 --SAFPNLRRYLYSSSSSLVLPAVES---GWLDLSQLAEYLKEKCGA--SVVIVDVS------DLS------EDSFEEY- 126 (282)
T ss_pred --CcchHHHHHHhcCCcceeeeeEec---CccCHHHHHHHHHHHhCc--CceEEecC------ccc------ccccccc-
Confidence 245678888888999999999944 4444 6788888999875 22222222 111 1112222
Q ss_pred HhhhhhcCCCCceEEEEecCCCcc--ccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 181 RLRAEKSLKGQADLIVVCYGDTQS--MKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 181 ~sr~~~~~~g~TdlVV~C~~~~~~--~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
++.|+++=-.+... -+-......=-++|.++++.+.+.+ +||++|.|+|
T Consensus 127 ----------~~~vi~V~l~~l~~~~~~R~~~L~~nD~~l~~vl~~l~s~~-~ytvIyts~~ 177 (282)
T PF05827_consen 127 ----------KPRVIRVDLPPLPSSSESRKEALSDNDEFLRKVLSKLPSPD-PYTVIYTSTP 177 (282)
T ss_pred ----------CCcEEEEECCCCCCccccchhhhhhhhHHHHHHHHhcCCCC-cEEEEEEccC
Confidence 45677773322211 1222244444678999999999999 9999999999
No 2
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=63.96 E-value=79 Score=35.05 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=85.8
Q ss_pred cccCCCCCCHHHHHHHHhhhcccccceeeceeeecCCcchhhhhhhhhHhhhcccCccceEEEecccccCCcccccccch
Q 021328 94 HISGNKHADLALVDTLKVSFTKSNFSMAFPYIVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADL 173 (314)
Q Consensus 94 DiS~~k~sd~alvd~Lk~sf~~S~fSMAfPYVaaS~~~~le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l 173 (314)
|=..--|-||...+.+-+--.+ +.+||- -.| .|+|++-++-.--+--+|+.|+-+ -.......+|
T Consensus 536 dhNGfsHQdPgf~~~~~~k~~d----~vRvyf-PpD----aNtlLav~d~~l~s~n~in~iVa~------K~p~pq~~t~ 600 (793)
T COG3957 536 DHNGFSHQDPGFIDHVANKKSD----IVRVYF-PPD----ANTLLAVYDHCLRSRNKINVIVAS------KQPRPQWLTM 600 (793)
T ss_pred ccCCCccCCchHHHHHHhhccC----ceeEec-CCC----CcchhhhhhHHhhccCceEEEEec------CCCcceeecH
Confidence 3344456788888877654333 889998 222 588999888876777778877755 4566666777
Q ss_pred HhHHHHHHhhh-----hhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcC--CeEEEEEeecCCC
Q 021328 174 HSVHDHLRLRA-----EKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSG--AKYTVLYVSDPVR 242 (314)
Q Consensus 174 ~svqd~l~sr~-----~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg--~ky~vLYaSdP~~ 242 (314)
+....+..+.. ..+..|++|||+.|. |. -.=.|+|.. ..-|++.+ .|+-++|+-||++
T Consensus 601 ~qA~~~~~~G~~iwewas~d~gepdvV~A~~-Gd---------~~t~e~laA-a~~L~e~~p~l~vRvVnVvdl~r 665 (793)
T COG3957 601 EQAEKHCTDGAGIWEWASGDDGEPDVVMACA-GD---------VPTIEVLAA-AQILREEGPELRVRVVNVVDLMR 665 (793)
T ss_pred HHHHHHhhcCcEEEEeccCCCCCCCEEEEec-CC---------cchHHHHHH-HHHHHHhCccceEEEEEEecchh
Confidence 77777777655 223456999999999 44 223444543 35678888 9999999999988
No 3
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=63.09 E-value=61 Score=27.31 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCceEEEEecCCCccccCCCCC-----------CcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 190 GQADLIVVCYGDTQSMKQPKQP-----------RPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~-----------~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
.+.|+|++|-+.-+.+...+.. +.-.+-|.+++..+++.|++ +++++.|..
T Consensus 58 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~--vili~~pp~ 119 (200)
T cd01829 58 EKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVP--VIWVGLPAM 119 (200)
T ss_pred CCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCc--EEEEcCCCC
Confidence 4789999998554443322210 12245667788888877776 666777644
No 4
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=63.02 E-value=56 Score=29.33 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=38.0
Q ss_pred CCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCCChhHHHHHHhh
Q 021328 190 GQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVRSVQYPSHQELERFLAE 258 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~s~~~ps~~~l~R~Lae 258 (314)
|+.|.|++|.... ..+.+....++...+++|+|++ +|.|-.......+.....++|+.+
T Consensus 66 g~~d~v~~~~~~~---------~~~~~~~~~~i~aa~~~gv~~~-V~~Ss~~~~~~~~~~~~~~~~l~~ 124 (285)
T TIGR03649 66 PEISAVYLVAPPI---------PDLAPPMIKFIDFARSKGVRRF-VLLSASIIEKGGPAMGQVHAHLDS 124 (285)
T ss_pred CceeEEEEeCCCC---------CChhHHHHHHHHHHHHcCCCEE-EEeeccccCCCCchHHHHHHHHHh
Confidence 3489999997322 1334667788999999999975 566643322224455566677754
No 5
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.71 E-value=70 Score=26.69 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCceEEEEecCCCccccCCCCCCcH-HHHHHHHHHHHHhcCCeEEEEEee
Q 021328 190 GQADLIVVCYGDTQSMKQPKQPRPE-SEVISELIDSVEKSGAKYTVLYVS 238 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~~sE-gEvLselissve~sg~ky~vLYaS 238 (314)
.+.|+|+++.+.-+.+........+ .+-+.+++..+++.+.+-.++..+
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~iil~t 115 (188)
T cd01827 66 FNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQALPSKPKIYICY 115 (188)
T ss_pred cCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3679999999554444332221112 367888888888876655454444
No 6
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=53.01 E-value=18 Score=38.25 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=50.0
Q ss_pred CCCCCCcEEEEeeccccccccccCCCCCCHHHHHHHHhhhccccc-ceeeceeeecCCcchhhhhhhhhHhhhcccCccc
Q 021328 74 QSPQSVDVALVFVGRELQSSHISGNKHADLALVDTLKVSFTKSNF-SMAFPYIVSAGEETMESSLFSEFTEACVDDFKVA 152 (314)
Q Consensus 74 ~~~~~~D~al~FIG~eL~SsDiS~~k~sd~alvd~Lk~sf~~S~f-SMAfPYVaaS~~~~le~SLlsgf~e~c~~~~gi~ 152 (314)
+.++.+|++++|=. |+|...+-|...+|+.+-+..+....= .++|||| ++.++ |.+. ++.-.
T Consensus 377 qp~R~vDvIfA~D~----SaDt~~nWPnGtsLv~TyeR~~~~~~~~~~~FP~V--Pd~~t--------fvn~---gLn~r 439 (552)
T cd07203 377 QPERDVDVIFAFDS----SADTDYNWPNGTSLVATYERQFSSQGNNGTGFPYV--PDQNT--------FVNL---GLNDR 439 (552)
T ss_pred CCCCCccEEEEEec----CCccccCCCCchHHHHHHHHHhccccCCCCcCCcC--CChHh--------HHhc---CCCCC
Confidence 45789999999854 778876778889999999988865432 6899999 32222 2222 44555
Q ss_pred eEEEeccccc
Q 021328 153 NVAFSESCTV 162 (314)
Q Consensus 153 ~va~~~sCsv 162 (314)
-+-|+ |-+
T Consensus 440 PtFFG--Cd~ 447 (552)
T cd07203 440 PTFFG--CDG 447 (552)
T ss_pred CeEec--ccC
Confidence 67888 965
No 7
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=47.89 E-value=1.2e+02 Score=25.88 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=30.2
Q ss_pred CceEEEEecCCCccccCCC----CCCcHHHHHHHHHHHHHhcCCeEEEEE
Q 021328 191 QADLIVVCYGDTQSMKQPK----QPRPESEVISELIDSVEKSGAKYTVLY 236 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~----~~~sEgEvLselissve~sg~ky~vLY 236 (314)
+.|+|++|.|.-+.+.... ..+.=.+-|.+++..+++.|++ ++|-
T Consensus 65 ~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~-~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGAT-PILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 6899999996665555421 1122246688899999999987 4443
No 8
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=45.80 E-value=23 Score=37.31 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=38.4
Q ss_pred CCCCCCcEEEEeeccccccccccCCCCCCHHHHHHHHhhhccccc--ceeecee
Q 021328 74 QSPQSVDVALVFVGRELQSSHISGNKHADLALVDTLKVSFTKSNF--SMAFPYI 125 (314)
Q Consensus 74 ~~~~~~D~al~FIG~eL~SsDiS~~k~sd~alvd~Lk~sf~~S~f--SMAfPYV 125 (314)
+.++.+|++++|=. |+|+.-+-+...+|+.+-+..+...-. .++||||
T Consensus 388 qp~R~vDvIfa~D~----SaDt~~~wPnGtsLv~tyer~~~~~~~~~~~~FP~v 437 (549)
T smart00022 388 QPERSVDVIFAVDA----SADPDEFWPNGSSLVKTYERHVVDQGLTFNLPFPYV 437 (549)
T ss_pred cCCCCccEEEEeec----cCCcccCCCCCchHHHHHHHHhhhcccccCCCCCcC
Confidence 35788999888744 688876788889999999988865433 8999999
No 9
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=45.64 E-value=93 Score=28.12 Aligned_cols=49 Identities=24% Similarity=0.446 Sum_probs=36.3
Q ss_pred CCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 189 KGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 189 ~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
....+|||+|+.+. -+.+. -+-+.++.++.-|+.+|-.|--++.=++-+
T Consensus 13 e~Ek~vvVv~~~~~---~~~~~--l~~~s~~~l~~eL~~~GYSylNIfs~~~~~ 61 (146)
T PF04763_consen 13 EKEKNVVVVCNHSW---PGPES--LPPESVSLLIEELEESGYSYLNIFSCSSES 61 (146)
T ss_pred cccCcEEEEEeCCc---ccccC--CChHHHHHHHHHHhhcCCceEEEEEEcCCC
Confidence 34678999999433 33333 344679999999999999999888776655
No 10
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=44.36 E-value=11 Score=28.05 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHh-hhccccc
Q 021328 285 ILVVSFCFCPFFY-LQFKNLQ 304 (314)
Q Consensus 285 ilVgivLl~iL~~-~~~~~~~ 304 (314)
+|.+|++++++++ ||.||+.
T Consensus 5 ~~~~i~~~~~~L~aCQaN~iR 25 (46)
T PF02402_consen 5 IFIGIFLLTMLLAACQANYIR 25 (46)
T ss_pred EEeHHHHHHHHHHHhhhccee
Confidence 5667777776666 9999864
No 11
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=40.61 E-value=91 Score=27.16 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=31.0
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
..|.|++|.+.. ...|.+.-..++...+++|+||.+ |.|=.
T Consensus 64 g~d~v~~~~~~~--------~~~~~~~~~~li~Aa~~agVk~~v-~ss~~ 104 (233)
T PF05368_consen 64 GVDAVFSVTPPS--------HPSELEQQKNLIDAAKAAGVKHFV-PSSFG 104 (233)
T ss_dssp TCSEEEEESSCS--------CCCHHHHHHHHHHHHHHHT-SEEE-ESEES
T ss_pred CCceEEeecCcc--------hhhhhhhhhhHHHhhhccccceEE-EEEec
Confidence 478887777333 277889999999999999999997 65533
No 12
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=38.46 E-value=95 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEE
Q 021328 188 LKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLY 236 (314)
Q Consensus 188 ~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLY 236 (314)
....+.+||+|.++.. + ..+...+++.|.+.+.+|
T Consensus 53 ~~~~~~iv~~c~~g~~---------a-----~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 53 LDKDKPVVVYCRSGNR---------S-----AKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCCeEEEEeCCCcH---------H-----HHHHHHHHHcCCCceEEe
Confidence 4556899999975441 1 566777888998876554
No 13
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=37.57 E-value=1.6e+02 Score=22.07 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=24.2
Q ss_pred hhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEE
Q 021328 185 EKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLY 236 (314)
Q Consensus 185 ~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLY 236 (314)
+......+++|++|.++. +++.-.-.-+.-.+++.|.+++.+|
T Consensus 61 ~~~~~~~~~iv~yc~~~~---------~~~~~~~~~~~~~l~~~g~~~v~~l 103 (113)
T PF00581_consen 61 GKKIDKDKDIVFYCSSGW---------RSGSAAAARVAWILKKLGFKNVYIL 103 (113)
T ss_dssp THGSTTTSEEEEEESSSC---------HHHHHHHHHHHHHHHHTTTSSEEEE
T ss_pred cccccccccceeeeeccc---------ccchhHHHHHHHHHHHcCCCCEEEe
Confidence 334566778999995333 2222222222233777888877665
No 14
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=36.24 E-value=73 Score=28.41 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=36.1
Q ss_pred cchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 171 ADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 171 ~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
.+++.|++.+..+.+ +..+=|-|. |+.+|||++..|+..-+ ++..+++ +|-.
T Consensus 24 ~tl~~i~~~l~~~a~-----~~g~~v~~~----------QSN~Egelid~I~~a~~--~~dgiII---Npga 75 (140)
T cd00466 24 TTLADIEALLRELAA-----ELGVEVEFF----------QSNHEGELIDWIHEARD--GADGIII---NPGA 75 (140)
T ss_pred CCHHHHHHHHHHHHH-----HcCCEEEEE----------eeCcHHHHHHHHHHhhc--cCcEEEE---cchH
Confidence 367788899988654 234445555 77999999999998854 4555655 4544
No 15
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=34.66 E-value=70 Score=27.08 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=36.3
Q ss_pred CCceEEEEecCCCccccCCCCCC-----cHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 190 GQADLIVVCYGDTQSMKQPKQPR-----PESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~~-----sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
...|+||++-+.. ...++++ .-.+++.++...+++.+-+-.++.+|+|.-
T Consensus 68 ~~aDivvitag~~---~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVP---RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTS---SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred ccccEEEEecccc---ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence 4689999998543 2233332 235678899999999999999999999954
No 16
>PRK05086 malate dehydrogenase; Provisional
Probab=33.65 E-value=74 Score=30.57 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=35.3
Q ss_pred CceEEEEecCCCccccCCCCCCc-----HHHHHHHHHHHHHhcCCeEEEEEeecCC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRP-----ESEVISELIDSVEKSGAKYTVLYVSDPV 241 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~s-----EgEvLselissve~sg~ky~vLYaSdP~ 241 (314)
..|+||+|.+.. +-. +.++. =.+++.+++..+++.+.+..++=+|.|.
T Consensus 69 ~~DiVIitaG~~-~~~--~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 GADVVLISAGVA-RKP--GMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCEEEEcCCCC-CCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 489999999543 211 12111 1336777999999999999999999997
No 17
>PRK05261 putative phosphoketolase; Provisional
Probab=32.74 E-value=2e+02 Score=32.05 Aligned_cols=117 Identities=11% Similarity=0.157 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHhhhcccccceeeceeeecCCcchhhhhhhhhHhhhcccCccceEEEecccccCCcccccccchHhHHH
Q 021328 99 KHADLALVDTLKVSFTKSNFSMAFPYIVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADLHSVHD 178 (314)
Q Consensus 99 k~sd~alvd~Lk~sf~~S~fSMAfPYVaaS~~~~le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l~svqd 178 (314)
-|-||..+|.|-+. ...+. ..|- +-| .|.++.-++.+-.+.-+++.|+.+ -+++..+.+++....
T Consensus 530 THQ~Pg~ie~l~~~-r~~~~---rV~r--PaD---aNe~laa~~~al~s~~~p~~Ivls------RQ~lp~~~~~~~a~~ 594 (785)
T PRK05261 530 SHQDPGFIDHVANK-KPDVI---RVYL--PPD---ANTLLAVADHCLRSRNYINVIVAG------KQPRPQWLSMDEARK 594 (785)
T ss_pred CCCCchHHHHHHhc-CCCcc---eEEe--CCC---HHHHHHHHHHHHHhCCCCEEEEEe------CCCCcccCChHHHHH
Confidence 35667777776544 11111 1111 111 355666666655555678888777 466666656664334
Q ss_pred HHHhhhh-----hc-CCCCceEEEEecCCCccccCCCCCCcHHHH-HHHHHHHHHhc--CCeEEEEEeecCCC
Q 021328 179 HLRLRAE-----KS-LKGQADLIVVCYGDTQSMKQPKQPRPESEV-ISELIDSVEKS--GAKYTVLYVSDPVR 242 (314)
Q Consensus 179 ~l~sr~~-----~~-~~g~TdlVV~C~~~~~~~k~~~~~~sEgEv-Lselissve~s--g~ky~vLYaSdP~~ 242 (314)
.+.+... .+ ..++.|+|++|. |+ |..+ --+....|++. |.|--|+.+.|+++
T Consensus 595 ~~~kGayi~~~a~~~~~~~pDvvL~at-Gs-----------ev~leAlaAa~~L~~~~pgikvRVVSv~dLf~ 655 (785)
T PRK05261 595 HCTKGLGIWDWASNDDGEEPDVVLACA-GD-----------VPTLETLAAADLLREHFPDLKIRVVNVVDLMK 655 (785)
T ss_pred hccCceEEEEeccCCCCCCCCEEEEEe-Cc-----------HhhHHHHHHHHHHHhhCCCCCEEEEEechhhh
Confidence 4444332 11 234679999999 44 4444 34566677888 99999999989877
No 18
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=32.00 E-value=1e+02 Score=27.71 Aligned_cols=51 Identities=25% Similarity=0.216 Sum_probs=35.0
Q ss_pred chHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 172 DLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 172 ~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
+++.|++.+..+-+ +..+=|-|. |+.+|||++..|+..-++ ++.+++ +|-.
T Consensus 27 tl~~i~~~~~~~a~-----~~g~~~~~~----------QSN~EGelId~i~~a~~~--~dgiII---Npga 77 (146)
T PRK13015 27 TLADVEALCRAAAE-----ALGLEVEFR----------QSNHEGELIDWIHEARGD--VAGIVI---NPGA 77 (146)
T ss_pred CHHHHHHHHHHHHH-----HcCCEEEEE----------eeCcHHHHHHHHHHhhhc--CCEEEE---cchH
Confidence 67788898888644 233344555 779999999999998543 455554 5655
No 19
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=31.59 E-value=68 Score=26.55 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=35.4
Q ss_pred hhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 021328 182 LRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVL 235 (314)
Q Consensus 182 sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vL 235 (314)
-|+++..+|--|+++..++..... +....+|.+++..|++.|.----|
T Consensus 33 yRRGK~~~gDiDiLIt~~~~~~~~------~~~~~~l~~lv~~L~~~g~i~~~L 80 (112)
T PF14792_consen 33 YRRGKETSGDIDILITHPDPSSVS------KKLEGLLEKLVKRLEEKGFITDDL 80 (112)
T ss_dssp HHTT-SEESSEEEEEEETTCSTTT------CSTTCHHHHHHHHHHHTTSEEEEE
T ss_pred cccCCCcCCCeEEEEeCCCcCcch------hhHHHHHHHHHHHHHhCCeEEEec
Confidence 366777899999999999666322 112479999999999998766555
No 20
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=30.99 E-value=63 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=28.7
Q ss_pred eEEEEecCCCccccCCCCCC---cHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 193 DLIVVCYGDTQSMKQPKQPR---PESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 193 dlVV~C~~~~~~~k~~~~~~---sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
=||||+. .+..|... --.....+|....++-|++.+||| ||.
T Consensus 37 alVvF~~-----VE~~De~~~~~vv~~av~eI~~~a~kv~~~~ivly---PyA 81 (138)
T PF08915_consen 37 ALVVFIA-----VEKGDEENPEGVVEKAVEEIKWVAKKVKAKRIVLY---PYA 81 (138)
T ss_dssp EEEEEEE------BGGGGG-HHHHHHHHHHHHHHHHHHTT-SEEEEE---E-G
T ss_pred eEEEEEE-----EcCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEe---Ccc
Confidence 4888888 34444434 234567889999999999999999 666
No 21
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=30.95 E-value=1.1e+02 Score=29.27 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=38.8
Q ss_pred CceEEEEecCCCccccCCCCC-----CcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 191 QADLIVVCYGDTQSMKQPKQP-----RPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~-----~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
..|+||+|-+-. .+ .+++ +...+++.+++..+.+.+-+..++=+|.|.-
T Consensus 69 ~aDiVIitag~p--~~-~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d 122 (305)
T TIGR01763 69 NSDIVVITAGLP--RK-PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD 122 (305)
T ss_pred CCCEEEEcCCCC--CC-cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 689999998543 22 2333 3577999999999999999999999999943
No 22
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.60 E-value=1.9e+02 Score=23.91 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=32.1
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
..|.|+.|-+.. ..+.+....++..++++|+++++ |.|....
T Consensus 60 ~~d~vi~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~v-~~s~~~~ 101 (183)
T PF13460_consen 60 GADAVIHAAGPP---------PKDVDAAKNIIEAAKKAGVKRVV-YLSSAGV 101 (183)
T ss_dssp TSSEEEECCHST---------TTHHHHHHHHHHHHHHTTSSEEE-EEEETTG
T ss_pred hcchhhhhhhhh---------cccccccccccccccccccccce-eeecccc
Confidence 479999998544 11589999999999999999754 5776644
No 23
>PRK03673 hypothetical protein; Provisional
Probab=30.57 E-value=38 Score=34.18 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=34.7
Q ss_pred ceeeecCCcchhhhhhhhhHhhhcccCccceEEEecccccCCcccccccch
Q 021328 123 PYIVSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADL 173 (314)
Q Consensus 123 PYVaaS~~~~le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l 173 (314)
+||...|+++|++-+..-+.+ ....+++.+|||+ |.=-++++++
T Consensus 245 ~~v~~~~~~~l~~~v~~lL~~------~~~tla~AEScTG-Glla~~lt~v 288 (396)
T PRK03673 245 QSVIFEGTEGLPAQIARRLQE------RQLSLTLSEQFTA-GLLALQLSRA 288 (396)
T ss_pred CcEEEeCCCCHHHHHHHHHHh------cCCcEEEEHhhhh-HHHHHHHHhh
Confidence 677777899999999999999 4678999999997 3333345555
No 24
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=30.29 E-value=1e+02 Score=30.34 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=30.6
Q ss_pred EEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCC
Q 021328 194 LIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVRSVQY 246 (314)
Q Consensus 194 lVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~s~~~ 246 (314)
|||||--+. .+++- --.+|...+++.|.||.|.|++|-+--++-
T Consensus 3 LVvi~G~P~-----SGKst----rA~~L~~~l~~~~~K~~v~ii~deslg~~~ 46 (281)
T KOG3062|consen 3 LVVICGLPC-----SGKST----RAVELREALKERGTKQSVRIIDDESLGIEK 46 (281)
T ss_pred eEEEeCCCC-----CCchh----HHHHHHHHHHhhcccceEEEechhhcCCCC
Confidence 799997444 12221 224677889999999999999998654443
No 25
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=30.09 E-value=1.9e+02 Score=23.50 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=32.3
Q ss_pred ccccccchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeE
Q 021328 166 NFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKY 232 (314)
Q Consensus 166 d~kkl~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky 232 (314)
..+-+.+.+.+.+++... +-|-|++|- +.+|.+.++++++.+++.|++-
T Consensus 123 ~~~~lg~~~~l~~~~~~~-------~id~v~ial-----------~~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 123 GVPVLGDLDDLPELVREH-------DIDEVIIAL-----------PWSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp TEEEE--GGGHHHHHHHH-------T--EEEE-------------TTS-HHHHHHHHHHHHTTT-EE
T ss_pred CceeEcCHHHHHHHHHhC-------CCCEEEEEc-----------CccCHHHHHHHHHHHHhCCCEE
Confidence 345667888888888873 778898887 2456789999999999999874
No 26
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=29.23 E-value=77 Score=28.22 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.6
Q ss_pred cchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEE
Q 021328 171 ADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVL 235 (314)
Q Consensus 171 ~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vL 235 (314)
.++++|++.+..+-+ +..+=|-|. |+..|||++..|+..-++ ....++
T Consensus 25 ~tl~~i~~~~~~~a~-----~~g~~v~~~----------QSN~EGelid~I~~a~~~--~dgiII 72 (140)
T PF01220_consen 25 TTLEDIEQKCKETAA-----ELGVEVEFF----------QSNHEGELIDWIHEARDD--VDGIII 72 (140)
T ss_dssp SHHHHHHHHHHHHHH-----HTTEEEEEE----------E-SSHHHHHHHHHHHTCT--TSEEEE
T ss_pred CCHHHHHHHHHHHHH-----HCCCeEEEE----------ecCCHHHHHHHHHHHHhh--CCEEEE
Confidence 367788899988765 345667777 779999999999988665 444444
No 27
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.76 E-value=1.6e+02 Score=26.30 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=36.1
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCCCC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVRSV 244 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~s~ 244 (314)
..|+|++|+= ...=.+...+++..+++.|+....+|+-=+-++-
T Consensus 63 dv~vIgvSsl----------~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 63 DVDVIGVSSL----------DGGHLTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred CCCEEEEEec----------cchHHHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 7899999992 2344678999999999999999999987766643
No 28
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=28.60 E-value=2.9e+02 Score=21.63 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=38.5
Q ss_pred cCCCCceEEEEecCCCc------cccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeec
Q 021328 187 SLKGQADLIVVCYGDTQ------SMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSD 239 (314)
Q Consensus 187 ~~~g~TdlVV~C~~~~~------~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSd 239 (314)
...|-.|++++-+.+.. -.|..++..|+.+. +-++.+...|.++.|.|+.|
T Consensus 44 ~~~G~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~--~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 44 VRSGFPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQK--EWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred CCCCCCcEEEEecCCCccEEEEEEEcCCCCCcCHHHH--HHHHHHHHCCCEEEEEEccC
Confidence 36899999999986641 24667666666554 45688999999999999865
No 29
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=28.44 E-value=1.1e+02 Score=27.06 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=49.3
Q ss_pred CcccccccchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCCC
Q 021328 164 GENFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVRS 243 (314)
Q Consensus 164 ~~d~kkl~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~s 243 (314)
+++.|..+..--.-..|+...|..-.|. |+.-+ .-..-..+..+...+-|.+....|+++|-||+++=.||+.+.
T Consensus 24 ~~~~k~~a~~~E~~~~l~~~lErqfKGR---v~l~P--~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 24 GEDMKEAASQGEFLRLLADELERQFKGR---VLLFP--AFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCce---EEecC--CeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 5666665555444445555555555554 23323 222333345566667799999999999999999999999875
No 30
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=27.98 E-value=1e+02 Score=27.67 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=35.1
Q ss_pred cchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 171 ADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 171 ~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
.++++|++.+..+.+ +.++=|-|. |+..|||++..|+..-+ ++..+++ +|-.
T Consensus 26 ~tl~~i~~~~~~~a~-----~~g~~v~~~----------QSN~EGelId~I~~a~~--~~dgiiI---Npga 77 (146)
T PRK05395 26 TTLADIEALLEEEAA-----ELGVELEFF----------QSNHEGELIDRIHEARD--GADGIII---NPGA 77 (146)
T ss_pred CCHHHHHHHHHHHHH-----HcCCEEEEE----------eeCcHHHHHHHHHhccc--CCcEEEE---CchH
Confidence 467778888888544 333445565 77999999999998754 3455544 4544
No 31
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.29 E-value=3.9e+02 Score=22.35 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=46.3
Q ss_pred hhhhhhhhhHhhhcccCccceEEEecccccCCcccccccchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCC
Q 021328 133 MESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPR 212 (314)
Q Consensus 133 le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~ 212 (314)
..+.+-..+++..+.+..+.|.+.+|..+. ++ -+++.. -...+.|+|++.- |+..........
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~---------~~---~~~l~~----~~~~~pd~Vii~~-G~ND~~~~~~~~ 87 (191)
T cd01836 25 LAGQLARGLAAITGRGVRWRLFAKTGATSA---------DL---LRQLAP----LPETRFDVAVISI-GVNDVTHLTSIA 87 (191)
T ss_pred HHHHHHHHHHHhhCCceEEEEEecCCcCHH---------HH---HHHHHh----cccCCCCEEEEEe-cccCcCCCCCHH
Confidence 334455556655433445555555544431 11 122222 2456889999999 444443322223
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 213 PESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 213 sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
.=.+=+.+++..+.+..-.-.++.+|=|
T Consensus 88 ~~~~~l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 88 RWRKQLAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 3345667777777763333345555544
No 32
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=25.76 E-value=1.9e+02 Score=23.80 Aligned_cols=51 Identities=6% Similarity=0.097 Sum_probs=27.7
Q ss_pred CCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 189 KGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 189 ~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
..+.|+|+++- |............=.+-+.+++..+++...+-.++..+=|
T Consensus 49 ~~~pd~v~i~~-G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~ 99 (174)
T cd01841 49 QKNPSKVFLFL-GTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVL 99 (174)
T ss_pred hcCCCEEEEEe-ccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeC
Confidence 45789999998 4444332111111245566777777665433345555544
No 33
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.73 E-value=2e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
+.|+||++.+.-.....-...+.=.+-+.++++.+.+.+++ +++++-|
T Consensus 67 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~--vil~~~~ 114 (185)
T cd01832 67 RPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGAR--VVVFTIP 114 (185)
T ss_pred CCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCE--EEEecCC
Confidence 78999999955444331111122245667788888877776 3444443
No 34
>PRK10534 L-threonine aldolase; Provisional
Probab=25.55 E-value=2e+02 Score=26.47 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=30.1
Q ss_pred chHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 021328 172 DLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGA 230 (314)
Q Consensus 172 ~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ 230 (314)
|++++.+.+.. ..++..+|++|++|+... +.--..+-|.+++...++-|+
T Consensus 112 d~~~l~~~i~~--~~~~~~~~~lv~l~np~~-------G~v~~~~~l~~i~~~~~~~~~ 161 (333)
T PRK10534 112 PLDKVAAKIKP--DDIHFARTRLLSLENTHN-------GKVLPREYLKQAWEFTRERNL 161 (333)
T ss_pred CHHHHHHhhcc--cCcCcccceEEEEecCCC-------CeecCHHHHHHHHHHHHHcCC
Confidence 67766666532 111234789999997332 444445567777777766554
No 35
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=24.96 E-value=87 Score=29.96 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=41.2
Q ss_pred CCcchhhhhhhhhHhhhcc--cCccceEEEecccccCCcccccccchHhHHHHHHh--------hhhhcCCCCceEEEEe
Q 021328 129 GEETMESSLFSEFTEACVD--DFKVANVAFSESCTVEGENFLKLADLHSVHDHLRL--------RAEKSLKGQADLIVVC 198 (314)
Q Consensus 129 ~~~~le~SLlsgf~e~c~~--~~gi~~va~~~sCsv~~~d~kkl~~l~svqd~l~s--------r~~~~~~g~TdlVV~C 198 (314)
+++.+.+-+.+.+.....+ ..-.....+.++|..+..++.+-.+++..-+||.. .+...+.|-.+++|+|
T Consensus 54 ~~~~lad~l~~~~k~~~~dLS~lELedl~i~~s~f~dt~~~~~~r~l~nL~~fLk~~~~~~~~l~~~~~~~gsP~~lvvs 133 (252)
T PF14617_consen 54 DPELLADYLAQKIKRFNPDLSSLELEDLYIPESAFLDTSSFTKPRTLDNLPSFLKQFSPKKKKLSKKPKEKGSPHVLVVS 133 (252)
T ss_pred CHHHHHHHHHHHHHHhCCCcCeeeccccccCHHhcccccccCCCcccchHHHHHHHhccchhhhhhcccCCCCCEEEEEc
Confidence 4455555555554444332 12223334566676655556554455555577642 1133467889999999
Q ss_pred cCCC
Q 021328 199 YGDT 202 (314)
Q Consensus 199 ~~~~ 202 (314)
.++-
T Consensus 134 ~Sal 137 (252)
T PF14617_consen 134 SSAL 137 (252)
T ss_pred chHH
Confidence 9653
No 36
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=24.87 E-value=90 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCCChh
Q 021328 211 PRPESEVISELIDSVEKSGAKYTVLYVSDPVRSVQYPSHQ 250 (314)
Q Consensus 211 ~~sEgEvLselissve~sg~ky~vLYaSdP~~s~~~ps~~ 250 (314)
++.|.+-+.+.++.++ .|-+-|+|+|++.. ||-|.
T Consensus 9 ~~eEi~~fi~~~~~~~----~~ei~h~sk~~~~n-NPKY~ 43 (60)
T PF13113_consen 9 TKEEIEEFIKSFEKLK----GFEITHTSKPYKKN-NPKYK 43 (60)
T ss_pred CHHHHHHHHHhhhhcC----CceEEEecccccCC-Ccccc
Confidence 3445444444333332 57888999999976 77653
No 37
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.75 E-value=1.2e+02 Score=27.15 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=34.7
Q ss_pred cchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 171 ADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 171 ~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
.+++.|++.+..+.+ +..+=|-|. |+..|||++..|+..-++ +..+++ +|-+
T Consensus 24 ~tl~di~~~~~~~a~-----~~g~~v~~~----------QSN~EGelId~i~~a~~~--~dgiII---Npga 75 (141)
T TIGR01088 24 QTLEEIVEIIETFAA-----QLNVELEFF----------QSNSEGQLIDKIHEAEGQ--YDGIII---NPGA 75 (141)
T ss_pred CCHHHHHHHHHHHHH-----HcCCEEEEE----------eeCcHHHHHHHHHhcccc--CCEEEE---cChH
Confidence 367778888888644 233445566 779999999999987543 344443 5555
No 38
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.04 E-value=1.6e+02 Score=28.35 Aligned_cols=47 Identities=21% Similarity=0.574 Sum_probs=37.5
Q ss_pred CceEEEEecCCCccccCCCCC-------CcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 191 QADLIVVCYGDTQSMKQPKQP-------RPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~-------~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
..|+||++-+.. .| ++.+ +.=.+++.++...+.+++-+-.++=+|+|
T Consensus 68 ~aDivvitaG~~--~k-pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 68 DADIIVITAGPS--ID-PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCEEEECCCCC--CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 679999998543 22 2333 34468899999999999999999999999
No 39
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=50 Score=33.72 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=34.1
Q ss_pred HHHHhhhcCCCccceeeeccC-cc-------------------ccC-CCCceEEeecChHhHHHHHHhccC
Q 021328 15 VLSAIAFASPSTVPAFLWSTH-HQ-------------------KIS-SNNALNYQTLSPKDLAKAVLTQGG 64 (314)
Q Consensus 15 ~~~~~~~a~~~t~PAFlWS~~-~~-------------------~~~-~~~~VnYqviS~kdLaksVL~e~G 64 (314)
+-++.+.|+|+-.|+=.|+.| .| |++ .+..++|.++|++|++..++---|
T Consensus 260 ~~s~~A~Aap~~~~vs~~~~eaaRV~~~araq~~sp~ll~~~v~ig~~~~~i~~~~~s~~d~a~e~~~~tg 330 (410)
T COG4320 260 SRSAVAIAAPTQMPVSIYHHEAARVARTARAQLLSPDLLIGYVSIGNTQYYIHEKSPSQEDLAPETLNTTG 330 (410)
T ss_pred hhhHHHHhcCCCccccccchhHHHHHhhhhhhccChhhcCceEEeccCceEEEEecCCccccchHHhhccc
Confidence 445667899999999999976 33 233 222388888888888877765333
No 40
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=23.17 E-value=2.9e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=28.1
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCe
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAK 231 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~k 231 (314)
+.|.|++|-.--..|.+.+....+.+-+.+.+..+++.|++
T Consensus 30 ~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 70 (231)
T TIGR01854 30 KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVP 70 (231)
T ss_pred cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCe
Confidence 79999999876666655544445555666677777776654
No 41
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.74 E-value=1.9e+02 Score=23.90 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCceEEEEecCCCccccCCC-CCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 189 KGQADLIVVCYGDTQSMKQPK-QPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 189 ~g~TdlVV~C~~~~~~~k~~~-~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
..+.|+|++|- |..+..... ....=.+=+.++++.+++...+-.+++++-|
T Consensus 54 ~~~pd~Vii~~-G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 54 ALPPDLVILSY-GTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred hCCCCEEEEEC-CCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 34679999999 444433321 1122246677888888885444456666644
No 42
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=22.65 E-value=1.9e+02 Score=31.19 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=28.9
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecC
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDP 240 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP 240 (314)
++|++|+|++.. .=.|.-.++...|++.|.+ .|+.+--|
T Consensus 546 ga~i~viCssD~----------~Y~~~a~~~~~al~~ag~~-~v~lAG~p 584 (619)
T TIGR00642 546 GAQVAVLCSSDK----------VYAQQGLEVAKALKAAGAK-ALYLAGAF 584 (619)
T ss_pred CCCEEEEeCCCc----------chHHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence 689999999443 2234557899999999998 55556555
No 43
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.44 E-value=2e+02 Score=24.55 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=29.9
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEee
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVS 238 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaS 238 (314)
+.|+|++|+--+ .=.|...+++..+++.|...+.+++-
T Consensus 53 ~adii~iSsl~~----------~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 53 DVHVVGVSSLAG----------GHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCEEEEcCchh----------hhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 889999999332 23566899999999999877778873
No 44
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.40 E-value=2.3e+02 Score=21.57 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCCceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEe
Q 021328 189 KGQADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYV 237 (314)
Q Consensus 189 ~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYa 237 (314)
...+.+||+|.+|. .+ ......++..|.+++..|.
T Consensus 64 ~~~~~ivv~c~~g~---------~s-----~~~~~~l~~~G~~~v~~~~ 98 (106)
T cd01519 64 SKDKELIFYCKAGV---------RS-----KAAAELARSLGYENVGNYP 98 (106)
T ss_pred CCCCeEEEECCCcH---------HH-----HHHHHHHHHcCCccceecC
Confidence 44678999999653 22 3455667888999887774
No 45
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.26 E-value=5.6e+02 Score=24.71 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred cCCcchhhhhhhhhHhhhcccCccceEEEecccccCCcc---cccc---cchHhHHHHHHhhhhhcCCC----CceEEEE
Q 021328 128 AGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGEN---FLKL---ADLHSVHDHLRLRAEKSLKG----QADLIVV 197 (314)
Q Consensus 128 S~~~~le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d---~kkl---~~l~svqd~l~sr~~~~~~g----~TdlVV~ 197 (314)
..+..+.+.++..+.++ |+++|.++ +++.+ ++.+ ++.+.+.+.+.. -+..| ..|+|+=
T Consensus 92 ~~p~~~t~e~l~~l~~~-----G~~rvsiG----vqS~~d~~L~~l~R~~~~~~~~~ai~~---l~~~g~~~v~~dli~G 159 (374)
T PRK05799 92 GNPGTFTEEKLKILKSM-----GVNRLSIG----LQAWQNSLLKYLGRIHTFEEFLENYKL---ARKLGFNNINVDLMFG 159 (374)
T ss_pred eCCCcCCHHHHHHHHHc-----CCCEEEEE----CccCCHHHHHHcCCCCCHHHHHHHHHH---HHHcCCCcEEEEeecC
Confidence 45677888999999998 88888888 33433 3333 344444444332 22223 1344321
Q ss_pred ecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 198 CYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 198 C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
- ++ + . .|-+.+.+..+.+.|.+++.+|.=.|.+
T Consensus 160 l--Pg-------q--t-~e~~~~~l~~~~~l~~~~is~y~l~~~p 192 (374)
T PRK05799 160 L--PN-------Q--T-LEDWKETLEKVVELNPEHISCYSLIIEE 192 (374)
T ss_pred C--CC-------C--C-HHHHHHHHHHHHhcCCCEEEEeccEecC
Confidence 1 22 2 2 3456677888888999999999755543
No 46
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.75 E-value=94 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=17.8
Q ss_pred CCCccchhh-------hhhhhhhhHHHHHHHHHHHh
Q 021328 269 TGCDEVCQF-------KSSLFEGILVVSFCFCPFFY 297 (314)
Q Consensus 269 t~CD~~Cq~-------KssLLEGilVgivLl~iL~~ 297 (314)
..|++.|+- |.+..--|+.|+++++++++
T Consensus 18 ~fCS~~C~~~~~k~qk~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 18 SFCSPKCREEYRKRQKRMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999964 33444556666666555554
No 47
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=21.71 E-value=2.3e+02 Score=27.08 Aligned_cols=50 Identities=14% Similarity=0.351 Sum_probs=38.8
Q ss_pred CCceEEEEecCCCccccCCCCCCcHH-----HHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 190 GQADLIVVCYGDTQSMKQPKQPRPES-----EVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~~sEg-----EvLselissve~sg~ky~vLYaSdP~~ 242 (314)
...|+||+|-+-. . ..++++.+- +++.++...+++.+-+..++=++.|..
T Consensus 71 ~~aDiViitag~p--~-~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd 125 (309)
T cd05294 71 AGSDIVIITAGVP--R-KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD 125 (309)
T ss_pred CCCCEEEEecCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH
Confidence 4789999998543 1 233554555 889999999999999989999999953
No 48
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=21.22 E-value=2.1e+02 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCccccC-CCC-C---CcH---------HHHHHHHHHHHHhcCCeEEEEEee
Q 021328 190 GQADLIVVCYGDTQSMKQ-PKQ-P---RPE---------SEVISELIDSVEKSGAKYTVLYVS 238 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~-~~~-~---~sE---------gEvLselissve~sg~ky~vLYaS 238 (314)
.+.|+|++|- |+..... ... . ..| .+-|.+++..+++.+.+-.++-++
T Consensus 67 ~~~d~V~i~~-G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 67 KKADVITITI-GGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred ccCCEEEEEe-cchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4899999999 4433321 100 0 001 134788888888866554444444
No 49
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=21.16 E-value=84 Score=24.23 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.1
Q ss_pred cceEEEecccccCCcccccccchHhHHHHHHhh
Q 021328 151 VANVAFSESCTVEGENFLKLADLHSVHDHLRLR 183 (314)
Q Consensus 151 i~~va~~~sCsv~~~d~kkl~~l~svqd~l~sr 183 (314)
-.+|.|-.+|- |+|.+|+.||.||...
T Consensus 23 k~~V~Y~aPCG------r~Lr~~~EV~~YL~~t 49 (60)
T cd01395 23 KKHVIYKAPCG------RSLRNMSEVHRYLRET 49 (60)
T ss_pred ccceEEECCcc------hhhhcHHHHHHHHHhc
Confidence 35689998886 8999999999999973
No 50
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=21.14 E-value=4.7e+02 Score=21.51 Aligned_cols=100 Identities=7% Similarity=0.163 Sum_probs=49.0
Q ss_pred eecCCcchhhhhhhhhHhhhcccCccceEEEecccccCCcccccccchHhHHHHHHhhhhhcCCCCceEEEEecCCCc--
Q 021328 126 VSAGEETMESSLFSEFTEACVDDFKVANVAFSESCTVEGENFLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQ-- 203 (314)
Q Consensus 126 aaS~~~~le~SLlsgf~e~c~~~~gi~~va~~~sCsv~~~d~kkl~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~-- 203 (314)
+-|.|..-+...+-.|++--.+..|++.+ .|- -+.+..+.+ ..-.|+..... ..--|||+|+.|..
T Consensus 6 ~Ys~d~~~h~~~V~~la~~L~~~~g~~V~--lD~-----~~~~~i~~~-g~~~W~~~~~~----~ad~Vliv~S~~~~~~ 73 (150)
T PF08357_consen 6 SYSHDSEEHKEWVLALAEFLRQNCGIDVI--LDQ-----WELNEIARQ-GPPRWMERQIR----EADKVLIVCSPGYKER 73 (150)
T ss_pred EeCCCCHHHHHHHHHHHHHHHhccCCcee--ecH-----HhhcccccC-CHHHHHHHHHh----cCCEEEEEeccchhHH
Confidence 34445555656666666665555566544 111 222221121 14477777533 24457888882221
Q ss_pred ------cccCCCCCCcHHHHHHHHHHHH------HhcCCeEEEEEe
Q 021328 204 ------SMKQPKQPRPESEVISELIDSV------EKSGAKYTVLYV 237 (314)
Q Consensus 204 ------~~k~~~~~~sEgEvLselissv------e~sg~ky~vLYa 237 (314)
.-++..+....++++-..+.-. +....||..+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f 119 (150)
T PF08357_consen 74 YDKKADEREGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYF 119 (150)
T ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEe
Confidence 1111112222233333333333 566789999999
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=20.86 E-value=4.2e+02 Score=22.74 Aligned_cols=56 Identities=16% Similarity=0.355 Sum_probs=35.5
Q ss_pred hHhHHHHHHhhhhhcCCCCceEEEE---ecCC-----CccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEee
Q 021328 173 LHSVHDHLRLRAEKSLKGQADLIVV---CYGD-----TQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVS 238 (314)
Q Consensus 173 l~svqd~l~sr~~~~~~g~TdlVV~---C~~~-----~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaS 238 (314)
.+.+.++++. ++.|.|++ |.+| +.....-..++ +++|-|++....+.|++ |+.|.|
T Consensus 2 ~~~~~~~lk~-------~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Gir-v~ay~~ 65 (132)
T PF14871_consen 2 PEQFVDTLKE-------AHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIR-VPAYFD 65 (132)
T ss_pred HHHHHHHHHH-------hCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCE-EEEEEe
Confidence 3455666665 36777777 5433 22212212333 79999999999999997 566665
No 52
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=20.65 E-value=6.9e+02 Score=25.61 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=85.2
Q ss_pred HHHHHhhhcccccceeeceee----ecCCc-------------chhhhhhhhhHhhh--cccCccceEEEecccccCCcc
Q 021328 106 VDTLKVSFTKSNFSMAFPYIV----SAGEE-------------TMESSLFSEFTEAC--VDDFKVANVAFSESCTVEGEN 166 (314)
Q Consensus 106 vd~Lk~sf~~S~fSMAfPYVa----aS~~~-------------~le~SLlsgf~e~c--~~~~gi~~va~~~sCsv~~~d 166 (314)
.|-||..-++...|.+.|-.- +++-. .|...=+...-+.- .++-+++-|+++ |.= -.
T Consensus 226 ~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lG--cPH--~S 301 (400)
T PF04412_consen 226 EDDLKALGAAMATSGSVAMFHIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALG--CPH--LS 301 (400)
T ss_pred HHHHHHHhhhhhcccceeeEEEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEEC--CCC--CC
Confidence 567888888888888877542 33322 22222233333332 556688999999 982 44
Q ss_pred cccccchHhHHHHHHhhhhhcCCCCceEEEEecCCCccccCCCCCCcHHHHHHH--HHHHHHhcCCe---EEEEEeecCC
Q 021328 167 FLKLADLHSVHDHLRLRAEKSLKGQADLIVVCYGDTQSMKQPKQPRPESEVISE--LIDSVEKSGAK---YTVLYVSDPV 241 (314)
Q Consensus 167 ~kkl~~l~svqd~l~sr~~~~~~g~TdlVV~C~~~~~~~k~~~~~~sEgEvLse--lissve~sg~k---y~vLYaSdP~ 241 (314)
+.. +..|-++|.+|+ ..-+++++|.|+ .+=.+..++ ++..+|++|++ .|=.++|...
T Consensus 302 ~~E---l~~ia~ll~gr~---~~~~~~~~i~t~------------~~v~~~a~~~G~~~~le~~G~~iv~dTC~~v~p~~ 363 (400)
T PF04412_consen 302 LEE---LREIAELLEGRK---VHPNVPLWITTS------------RAVYELAERMGYVERLEKAGVQIVTDTCMVVSPII 363 (400)
T ss_pred HHH---HHHHHHHHhCCC---CCCCceEEEECC------------HHHHHHHHhCCHHHHHHHcCCEEEccccceecccc
Confidence 444 444558888766 234789999888 344567777 99999999997 3334444332
Q ss_pred C--CCCCCChhHHHHHHhhhhcCCCC
Q 021328 242 R--SVQYPSHQELERFLAESVAGNKS 265 (314)
Q Consensus 242 ~--s~~~ps~~~l~R~Lae~t~gn~~ 265 (314)
+ ....-.+..+..|.+.+..|.+.
T Consensus 364 ~~~~~~v~TnS~K~a~Y~~~~~g~~v 389 (400)
T PF04412_consen 364 PKGYKVVATNSGKAAHYLPGLCGVKV 389 (400)
T ss_pred CCCCceEEECcHHHHHhccccCCCce
Confidence 2 11133467777777766656555
No 53
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.47 E-value=1.5e+02 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.3
Q ss_pred CceEEEEecCCCccccCCCCCCcHHHHHHHHHHHHHhcCCeEEEEEee
Q 021328 191 QADLIVVCYGDTQSMKQPKQPRPESEVISELIDSVEKSGAKYTVLYVS 238 (314)
Q Consensus 191 ~TdlVV~C~~~~~~~k~~~~~~sEgEvLselissve~sg~ky~vLYaS 238 (314)
+.|+|++|..- ..-.+.+.+++..+++.|...+.+++.
T Consensus 50 ~~d~V~iS~~~----------~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 50 DVDVIGLSSLS----------GGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred CCCEEEEcccc----------hhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 88999999832 234456899999999999888888877
No 54
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=20.06 E-value=1.1e+02 Score=32.48 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=86.9
Q ss_pred CCcEEEEeeccccccccccCC---CCCCHHHHHHHH--hhhc-----ccccceeeceee-ecCCc-------chhhhhhh
Q 021328 78 SVDVALVFVGRELQSSHISGN---KHADLALVDTLK--VSFT-----KSNFSMAFPYIV-SAGEE-------TMESSLFS 139 (314)
Q Consensus 78 ~~D~al~FIG~eL~SsDiS~~---k~sd~alvd~Lk--~sf~-----~S~fSMAfPYVa-aS~~~-------~le~SLls 139 (314)
.+++.|+.||+--+...++-+ |++-|-|...-+ ..|. +-....++|=.. ..+.+ .=++.|+.
T Consensus 230 ~~~~~VLVIGESaR~~n~~L~GY~R~TtP~L~~~~~~~~~f~~~~Scgt~Ta~Slpcmfs~~~r~~~~~~~~~~~~Nl~d 309 (555)
T COG2194 230 KPRTVVLVIGESARRDNMSLYGYPRETTPFLAKLRGPLTVFFNAYSCGTATALSLPCMFSRDPRENYSEQKALHQDNLLD 309 (555)
T ss_pred CCcEEEEEEechhhHhhccccCCCCCCChhHHhccCCceeeccccccccceeeeehhhcccCchhccccccccccccHHH
Confidence 688999999999999999854 556665544333 1222 234456667653 22222 24677887
Q ss_pred hhHhhhcccCccceEEEec-------------------------ccccCC-cccccccchHhHHHHHHhhhhhcCCCCce
Q 021328 140 EFTEACVDDFKVANVAFSE-------------------------SCTVEG-ENFLKLADLHSVHDHLRLRAEKSLKGQAD 193 (314)
Q Consensus 140 gf~e~c~~~~gi~~va~~~-------------------------sCsv~~-~d~kkl~~l~svqd~l~sr~~~~~~g~Td 193 (314)
=++.+ |++--=++- .|..++ -|-.-|.+.+ .++..+ . .+..
T Consensus 310 ilkrA-----G~~t~W~~nq~~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~~De~LL~~~~---~~l~~~----~-~~~~ 376 (555)
T COG2194 310 LLKRA-----GYKTFWISNQTGCKGVTDRIPIANRADENYFLKGYCNGGNCYDEALLPDLD---QVLAQE----L-SQKK 376 (555)
T ss_pred HHHHc-----CCeEEeeccCcccccchhhchhhhhhhhhccccccccCcccchHHHhHhHH---HHhhcc----C-CCCe
Confidence 77776 443322221 444210 1222222222 344331 2 2448
Q ss_pred EEEEecCCCc---------cccCCC---C-------CCcH------------HHHHHHHHHHHHhcCCeEEEEEeecCCC
Q 021328 194 LIVVCYGDTQ---------SMKQPK---Q-------PRPE------------SEVISELIDSVEKSGAKYTVLYVSDPVR 242 (314)
Q Consensus 194 lVV~C~~~~~---------~~k~~~---~-------~~sE------------gEvLselissve~sg~ky~vLYaSdP~~ 242 (314)
+||+=--|++ .++... . ++.| =.+|++|++.||+.+....++|+||==-
T Consensus 377 ~IVLH~~GSHp~Y~~Ryp~~~~kF~p~c~~~~~~~c~~~~lvN~YDNtilYtD~~L~~vi~~Lk~~~~~~~liY~SDHGE 456 (555)
T COG2194 377 LIVLHLMGSHPNYYDRYPKEFAKFTPTCDTNDISSCSQEQLVNCYDNTILYTDYFLSKLIDQLKDKKDNTSLIYFSDHGE 456 (555)
T ss_pred EEEEEccCCCccHhhhCCHHHhccCCCCCccccccCcHHHHHHhhhchhhhhHHHHHHHHHHHHhCCCCeEEEEEcCccH
Confidence 8888776665 011111 0 1112 1479999999999999999999999744
No 55
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.02 E-value=2.5e+02 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=38.5
Q ss_pred CCceEEEEecCCCccccCCCCCCcH-----HHHHHHHHHHHHhcCC-eEEEEEeecCC
Q 021328 190 GQADLIVVCYGDTQSMKQPKQPRPE-----SEVISELIDSVEKSGA-KYTVLYVSDPV 241 (314)
Q Consensus 190 g~TdlVV~C~~~~~~~k~~~~~~sE-----gEvLselissve~sg~-ky~vLYaSdP~ 241 (314)
...|+||+|-+.. .+ .++++.+ .+++.++...+++.+- +-+++-+|.|.
T Consensus 77 ~daDivvitaG~~--~k-~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 77 KDADWALLVGAKP--RG-PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred CCCCEEEEeCCCC--CC-CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 3689999998543 22 3455554 7889999999999994 99999999995
Done!