Query 021329
Match_columns 314
No_of_seqs 168 out of 729
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 2E-17 6.8E-22 125.1 5.3 41 170-211 2-42 (63)
2 4gat_A Nitrogen regulatory pro 99.7 4E-17 1.4E-21 124.4 4.3 39 172-211 6-44 (66)
3 2vut_I AREA, nitrogen regulato 99.6 1.1E-16 3.9E-21 112.8 1.4 36 176-212 2-37 (43)
4 1gnf_A Transcription factor GA 99.6 3E-16 1E-20 112.2 2.3 37 174-211 3-39 (46)
5 2kae_A GATA-type transcription 99.6 7E-16 2.4E-20 119.1 4.0 45 171-215 4-48 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 3.2E-14 1.1E-18 117.9 4.7 41 171-212 55-95 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 3.2E-12 1.1E-16 105.8 5.9 36 173-209 3-38 (115)
8 3cw2_K Translation initiation 66.5 2.6 8.8E-05 35.8 2.0 31 175-206 103-133 (139)
9 2d74_B Translation initiation 63.8 2.7 9.1E-05 36.1 1.6 29 176-205 105-133 (148)
10 1nee_A EIF-2-beta, probable tr 56.7 2.7 9.2E-05 35.6 0.4 29 176-205 103-131 (138)
11 1dl6_A Transcription factor II 54.6 3.6 0.00012 29.8 0.7 31 174-207 10-40 (58)
12 3k7a_M Transcription initiatio 53.1 4.8 0.00016 37.6 1.5 32 175-207 21-52 (345)
13 2b0o_E UPLC1; arfgap, structur 52.9 5.7 0.00019 35.3 1.9 33 175-209 42-74 (301)
14 1k81_A EIF-2-beta, probable tr 52.8 1.3 4.3E-05 29.6 -1.8 28 177-205 2-29 (36)
15 3dwd_A ADP-ribosylation factor 44.3 14 0.00048 31.8 2.9 34 175-210 38-71 (147)
16 2owa_A Arfgap-like finger doma 44.2 11 0.00037 31.9 2.2 33 175-209 36-68 (138)
17 2iqj_A Stromal membrane-associ 43.5 12 0.00041 31.3 2.3 34 175-210 27-60 (134)
18 2crr_A Stromal membrane-associ 43.0 15 0.0005 31.1 2.8 34 175-210 29-62 (141)
19 2crw_A ARF GAP 3, ADP-ribosyla 39.6 18 0.00063 30.9 3.0 33 175-209 29-61 (149)
20 2olm_A Nucleoporin-like protei 39.1 11 0.00037 31.8 1.4 33 175-209 25-57 (140)
21 1pft_A TFIIB, PFTFIIBN; N-term 38.2 6 0.0002 27.1 -0.3 30 175-207 5-34 (50)
22 2p57_A GTPase-activating prote 36.9 14 0.00048 31.6 1.8 33 175-209 37-69 (144)
23 2g2k_A EIF-5, eukaryotic trans 36.6 4.6 0.00016 35.5 -1.3 31 176-206 97-128 (170)
24 3cng_A Nudix hydrolase; struct 35.0 9.8 0.00034 31.4 0.5 32 174-205 2-33 (189)
25 2e9h_A EIF-5, eukaryotic trans 32.0 7.1 0.00024 33.8 -0.8 31 176-206 104-135 (157)
26 2yrk_A Zinc finger homeobox pr 29.2 7.5 0.00026 28.7 -1.0 18 191-208 7-24 (55)
27 3sub_A ADP-ribosylation factor 26.2 33 0.0011 30.0 2.3 34 175-210 22-55 (163)
28 4bbr_M Transcription initiatio 25.5 11 0.00039 35.4 -0.8 31 175-206 21-51 (345)
29 3o47_A ADP-ribosylation factor 25.5 31 0.0011 31.3 2.2 34 175-210 37-70 (329)
30 1pqv_S STP-alpha, transcriptio 25.0 11 0.00039 35.1 -0.9 34 175-208 268-307 (309)
31 3jue_A Arfgap with coiled-coil 23.4 46 0.0016 30.9 2.9 34 175-210 45-78 (368)
32 3k1f_M Transcription initiatio 21.7 18 0.0006 32.6 -0.3 32 175-207 21-52 (197)
33 2yrc_A Protein transport prote 20.8 30 0.001 25.2 0.9 37 170-206 4-42 (59)
34 3lju_X ARF-GAP with dual PH do 20.5 44 0.0015 31.6 2.2 33 175-209 34-66 (386)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68 E-value=2e-17 Score=125.15 Aligned_cols=41 Identities=37% Similarity=0.841 Sum_probs=37.0
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 021329 170 NSNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 211 (314)
Q Consensus 170 ~s~~~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~ 211 (314)
++......|.+|+|++||+||+||+|+ +|||||||||++++
T Consensus 2 ~~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 2 AARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHN 42 (63)
T ss_dssp CCCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHS
T ss_pred CCCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcC
Confidence 456678899999999999999999996 99999999999943
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.66 E-value=4e-17 Score=124.35 Aligned_cols=39 Identities=46% Similarity=0.979 Sum_probs=35.6
Q ss_pred CCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 021329 172 NNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 211 (314)
Q Consensus 172 ~~~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~ 211 (314)
.+..+.|++|+|++||+||+||+|. +|||||||||+++.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHG 44 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcC
Confidence 4668999999999999999999996 99999999999833
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=1.1e-16 Score=112.83 Aligned_cols=36 Identities=47% Similarity=1.032 Sum_probs=33.2
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHHHHHHhhH
Q 021329 176 RACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARR 212 (314)
Q Consensus 176 r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k 212 (314)
+.|++|++++||+||+||+|+ +|||||||||+++++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 679999999999999999996 999999999999543
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.58 E-value=3e-16 Score=112.15 Aligned_cols=37 Identities=43% Similarity=0.987 Sum_probs=33.9
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 021329 174 TMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 211 (314)
Q Consensus 174 ~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~ 211 (314)
..+.|++|++++||+||+||+|+ +|||||||||+++.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcC
Confidence 46789999999999999999996 99999999999943
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.58 E-value=7e-16 Score=119.07 Aligned_cols=45 Identities=36% Similarity=0.529 Sum_probs=33.8
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhHHHH
Q 021329 171 SNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMQ 215 (314)
Q Consensus 171 s~~~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k~~~ 215 (314)
+....+.|+||+|++||+||+|+.+..+|||||||||+++.+.++
T Consensus 4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP 48 (71)
T 2kae_A 4 MNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRP 48 (71)
T ss_dssp ----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCC
T ss_pred CCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCC
Confidence 456789999999999999999543334999999999999554443
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.46 E-value=3.2e-14 Score=117.86 Aligned_cols=41 Identities=37% Similarity=0.834 Sum_probs=36.3
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhH
Q 021329 171 SNNTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARR 212 (314)
Q Consensus 171 s~~~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~~k 212 (314)
.......|+||+|+.||+||+||+| ++|||||||||++++.
T Consensus 55 ~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 55 ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI 95 (115)
T ss_dssp CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence 3455789999999999999999999 8999999999999443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.28 E-value=3.2e-12 Score=105.85 Aligned_cols=36 Identities=44% Similarity=1.024 Sum_probs=31.8
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 173 NTMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 173 ~~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
..++.|.||+++.||+||+||+| .+|||||||||+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKM 38 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhh
Confidence 35789999999999999999999 7999999999987
No 8
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=66.48 E-value=2.6 Score=35.81 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=22.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIR 206 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~ 206 (314)
-..|..|+...|-+-+.+..= -.-|+|||-.
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eeECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 368999999999999875333 5789999964
No 9
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=63.75 E-value=2.7 Score=36.13 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=23.8
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHH
Q 021329 176 RACSDCNTTTTPLWRSGPRGPKSLCNACGI 205 (314)
Q Consensus 176 r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 205 (314)
..|..|+...|-+-+.+..= -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 57999999999999865433 578999985
No 10
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=56.67 E-value=2.7 Score=35.62 Aligned_cols=29 Identities=34% Similarity=0.729 Sum_probs=23.5
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHH
Q 021329 176 RACSDCNTTTTPLWRSGPRGPKSLCNACGI 205 (314)
Q Consensus 176 r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 205 (314)
..|..|+...|-+-+.+..= -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999999865332 468999984
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.59 E-value=3.6 Score=29.79 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 021329 174 TMRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 207 (314)
Q Consensus 174 ~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 207 (314)
....|.+|+.+. +-.....| ..+|..||+-+
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred ccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 345788887654 44455556 58888888754
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.06 E-value=4.8 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=21.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 207 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 207 (314)
...|.+|+...+.+-.+-..| ..+|..||+-+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 456888888643333344566 68888888843
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=52.94 E-value=5.7 Score=35.32 Aligned_cols=33 Identities=30% Similarity=0.663 Sum_probs=27.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
...|.+|+... |.|-.-.-| ..+|-.|--..|.
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~ 74 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRE 74 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHh
Confidence 45799999965 999999999 6999999655443
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=52.77 E-value=1.3 Score=29.62 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.4
Q ss_pred ccccCCCCCCCccccCCCCCcccchHHHH
Q 021329 177 ACSDCNTTTTPLWRSGPRGPKSLCNACGI 205 (314)
Q Consensus 177 ~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 205 (314)
.|..|+..+|-+=+++..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998864322 356999984
No 15
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.25 E-value=14 Score=31.77 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=28.6
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+... |.|-.-.-| -.+|-.|.-..|..
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence 56799999875 999999999 69999998777663
No 16
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=44.16 E-value=11 Score=31.88 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=28.2
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
.+.|++|+... |.|-.-.-| -.+|-.|.-..|.
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 46799999875 999999999 6999999887766
No 17
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.48 E-value=12 Score=31.33 Aligned_cols=34 Identities=29% Similarity=0.644 Sum_probs=28.7
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+... |.|-.-.-| -.+|-.|.-..|..
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcC
Confidence 56799999874 999999999 69999998777663
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.04 E-value=15 Score=31.06 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=28.1
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+.. -|.|-.-..| -.+|-.|.-..|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 4569999986 5999999999 69999998776653
No 19
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.65 E-value=18 Score=30.90 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=28.1
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 5679999975 6999999999 6999999877766
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=39.07 E-value=11 Score=31.78 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=27.7
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 4679999986 6999999999 6999999876665
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=38.16 E-value=6 Score=27.11 Aligned_cols=30 Identities=27% Similarity=0.700 Sum_probs=17.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 207 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 207 (314)
...|-+|+.+ ++-.....| ...|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 3457777663 343333345 57788887754
No 22
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=36.85 E-value=14 Score=31.56 Aligned_cols=33 Identities=36% Similarity=0.711 Sum_probs=28.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
.+.|.+|+.. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 37 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcC
Confidence 4679999986 5999998899 6999999887766
No 23
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=36.58 E-value=4.6 Score=35.45 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=23.2
Q ss_pred cccccCCCCCCCccccCCCCC-cccchHHHHH
Q 021329 176 RACSDCNTTTTPLWRSGPRGP-KSLCNACGIR 206 (314)
Q Consensus 176 r~CsnC~Tt~TPlWRrGP~G~-~~LCNACGL~ 206 (314)
..|..|+...|-+-+....+- -.-|+|||-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 569999999999998422221 3679999964
No 24
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=34.96 E-value=9.8 Score=31.41 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=26.0
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHH
Q 021329 174 TMRACSDCNTTTTPLWRSGPRGPKSLCNACGI 205 (314)
Q Consensus 174 ~~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL 205 (314)
..+-|..||+..+.....|..+....|-.||.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 35679999999988777777777789999993
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.05 E-value=7.1 Score=33.83 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=22.6
Q ss_pred cccccCCCCCCCccccCCCC-CcccchHHHHH
Q 021329 176 RACSDCNTTTTPLWRSGPRG-PKSLCNACGIR 206 (314)
Q Consensus 176 r~CsnC~Tt~TPlWRrGP~G-~~~LCNACGL~ 206 (314)
..|..|+...|-+-+....+ --.-|+|||-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 56999999999998732222 14679999853
No 26
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=29.25 E-value=7.5 Score=28.74 Aligned_cols=18 Identities=33% Similarity=0.872 Sum_probs=14.8
Q ss_pred cCCCCCcccchHHHHHHH
Q 021329 191 SGPRGPKSLCNACGIRQR 208 (314)
Q Consensus 191 rGP~G~~~LCNACGL~~r 208 (314)
.+|+||..-|.-||..|-
T Consensus 7 ~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCccccccCcccc
Confidence 578888889999998764
No 27
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=26.20 E-value=33 Score=29.97 Aligned_cols=34 Identities=32% Similarity=0.619 Sum_probs=28.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|..
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~L 55 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSL 55 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHT
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCC
Confidence 4579999986 6999999999 69999997666653
No 28
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=25.50 E-value=11 Score=35.36 Aligned_cols=31 Identities=19% Similarity=0.618 Sum_probs=19.0
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIR 206 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~ 206 (314)
...|.+|+...+-+--+-..| .++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCC
Confidence 335888886444443344556 5888888874
No 29
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.48 E-value=31 Score=31.27 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=27.8
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|..
T Consensus 37 n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhccc
Confidence 4579999985 6799998889 69999998766653
No 30
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=24.97 E-value=11 Score=35.07 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=25.6
Q ss_pred CcccccCCCCCCCcc----ccCCCCC--cccchHHHHHHH
Q 021329 175 MRACSDCNTTTTPLW----RSGPRGP--KSLCNACGIRQR 208 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlW----RrGP~G~--~~LCNACGL~~r 208 (314)
...|..|+-...-.| |...+|- -+.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999998887665 5565553 369999999885
No 31
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=23.43 E-value=46 Score=30.90 Aligned_cols=34 Identities=32% Similarity=0.661 Sum_probs=27.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 210 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk~ 210 (314)
.+.|++|+.. -|.|-.-.-| -.+|-.|.-..|..
T Consensus 45 n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~l 78 (368)
T 3jue_A 45 NAQCCDCREP-APEWASINLG-VTLCIQCSGIHRSL 78 (368)
T ss_dssp TTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHH
T ss_pred cCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhcc
Confidence 5679999985 6999999999 69999997655543
No 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.67 E-value=18 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=22.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 207 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~ 207 (314)
...|..|+...+-+--.-..| .++|..||+-+
T Consensus 21 ~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVL 52 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBC
T ss_pred CeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCc
Confidence 457999998654444344456 69999999954
No 33
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=20.83 E-value=30 Score=25.20 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=31.1
Q ss_pred CCCCCCccccc--CCCCCCCccccCCCCCcccchHHHHH
Q 021329 170 NSNNTMRACSD--CNTTTTPLWRSGPRGPKSLCNACGIR 206 (314)
Q Consensus 170 ~s~~~~r~Csn--C~Tt~TPlWRrGP~G~~~LCNACGL~ 206 (314)
.+...+.+|.. |++---|.++-...|..-.||-|+.+
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 35677889998 99999999988877877899999753
No 34
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=20.45 E-value=44 Score=31.59 Aligned_cols=33 Identities=30% Similarity=0.667 Sum_probs=27.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 021329 175 MRACSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 209 (314)
Q Consensus 175 ~r~CsnC~Tt~TPlWRrGP~G~~~LCNACGL~~rk 209 (314)
.+.|++|++. -|.|-.-.-| -.+|-.|.-..|.
T Consensus 34 N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr~ 66 (386)
T 3lju_X 34 NARCADCGAP-DPDWASYTLG-VFICLSCSGIHRN 66 (386)
T ss_dssp GSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHT
T ss_pred CCcCccCCCC-CCCeEEeccc-EEEhhhhchHhhC
Confidence 3469999997 7999999999 6999999876554
Done!