BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021331
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 167 GRPIPIPGSGIQVTQLGHVKDLARA------FVQVLGNEKASR--QVFNISGEKYVTFDG 218
G P P G V HV DLA A +V+ LG S+ VFN+ + +
Sbjct: 258 GTDYPTP-DGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVRE 316
Query: 219 LARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVE 278
+ K G P P + G+++ P + A+ +KA+ VLGWKP++D +E
Sbjct: 317 VIEVARKTTGHPIPVR--------ECGRREGDP---AYLVAASDKAREVLGWKPKYDTLE 365
Query: 279 GLADS 283
+ ++
Sbjct: 366 AIMET 370
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 111/305 (36%), Gaps = 62/305 (20%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLK--------SDLL---------PH 117
I+ A ++ + ++ S+ +Y K S+LL P+
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 118 CESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 169
+R G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 170 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 219
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 220 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 279
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 280 LADSY 284
LA +Y
Sbjct: 305 LASTY 309
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 112/305 (36%), Gaps = 62/305 (20%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLK--------SDLL---------PH 117
I+ A ++ + ++ S+ +Y K S+LL P+
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 118 CESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 169
++ G ES G ++ S+ P +YGP N++P FH A +
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKA 196
Query: 170 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 219
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 220 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 279
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 280 LADSY 284
LA +Y
Sbjct: 305 LASTY 309
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 111/305 (36%), Gaps = 62/305 (20%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLK--------SDLL---------PH 117
I+ A ++ + ++ S+ +Y K S+LL P+
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 118 CESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 169
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 170 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 219
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDL 256
Query: 220 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 279
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 280 LADSY 284
LA +Y
Sbjct: 305 LASTY 309
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 111/305 (36%), Gaps = 62/305 (20%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLK--------SDLL---------PH 117
I+ A ++ + ++ S+ +Y K S+LL P+
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY 136
Query: 118 CESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 169
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNA 196
Query: 170 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 219
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 220 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 279
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 280 LADSY 284
LA +Y
Sbjct: 305 LASTY 309
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 130/340 (38%), Gaps = 61/340 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTL---FTRGKAPIAQQLPGESDQEFAEFS---------S 49
GG F+G L+ L+ +GH+VT+ F G+ + G + E
Sbjct: 12 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVD 71
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNL-EQFIYCSSAGV 108
+I HL +++ + + + + +N +L + + + S++ V
Sbjct: 72 QIYHLASPASPPNYMYNPIKTLKTNTIGTLN---------MLGLAKRVGARLLLASTSEV 122
Query: 109 YLKSDLLPHCE-------------SRHKGKLNTESV----LESKGVNWTSLRPVYIYGP- 150
Y ++ P E +GK E++ ++ +GV R +GP
Sbjct: 123 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 182
Query: 151 --LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNI 208
+N V F + G P+ + GSG Q +V DL V ++ + +S N+
Sbjct: 183 MHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNL 240
Query: 209 SGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 268
+ T A+ G E+ + + D K+K ++KAK +L
Sbjct: 241 GNPEEHTILEFAQLIKNLVGSGS-EIQFLSEAQDDPQKRKP----------DIKKAKLML 289
Query: 269 GWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGK 308
GW+P L EGL + + +RKE ++ ++ + K
Sbjct: 290 GWEPVVPLEEGLNKAIHY------FRKELEYQANNQYIPK 323
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 30/187 (16%)
Query: 116 PHCESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAG 167
P+ ++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 135 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQ 194
Query: 168 RP--IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFD 217
+ + GSG + + HV D+A A + V L N + N+ T
Sbjct: 195 SAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIR 254
Query: 218 GLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV 277
LA+ AK G+ + FD K P + V + H LGW E L
Sbjct: 255 ELAQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLE 302
Query: 278 EGLADSY 284
GLA +Y
Sbjct: 303 AGLASTY 309
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 62/305 (20%)
Query: 30 APIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEP 89
+ I +QL D E + L+L R +DF S + + + G A+ P
Sbjct: 17 SAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 76
Query: 90 -------------ILDAL--PNLEQFIYCSSAGVYLK--------SDLL---------PH 117
I+ A ++ + ++ S+ +Y K S+LL P
Sbjct: 77 ADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPE 136
Query: 118 CESRHKGKLNTESVLESKGVNWTSLRPVYIYGPL-NYNPVEEWF-------FHRLKAGRP 169
++ G ES G ++ S+ P +YGP N++P FH A
Sbjct: 137 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSA 196
Query: 170 --IPIPGSGIQVTQLGHVKDLARAFVQV--------LGNEKASRQVFNISGEKYVTFDGL 219
+ + GSG + + HV D+A A + V L N + N+ T L
Sbjct: 197 PDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIREL 256
Query: 220 ARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEG 279
A+ AK G+ + FD K P + V + H LGW E L G
Sbjct: 257 AQTIAKVVGYKGRVV-------FDASKPDGTPRK----LLDVTRL-HQLGWYHEISLEAG 304
Query: 280 LADSY 284
LA +Y
Sbjct: 305 LASTY 309
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 104/279 (37%), Gaps = 36/279 (12%)
Query: 7 IGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS----SKILHLKGDRKDYD 62
IG ++ LL++ G +V + L + F E S + + L GD +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDA 92
Query: 63 FVKSSLSAKGFDVVYDINGREADEVEPILDALP--NLEQFIYCSSAGVY----------L 110
V ++ S K D Y+ ++ A N+ +F+Y +A Y L
Sbjct: 93 VVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRL 152
Query: 111 KSDLLPHCESRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPI 170
P S K E LE G+++ + R + GP N + FF RL G+
Sbjct: 153 DHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKC 212
Query: 171 PIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAG-- 228
+ + VKDLARA V+ + + ++ S V L A +A
Sbjct: 213 FVTKAR---RDFVFVKDLARATVRAV--DGVGHGAYHFSSGTDVAIKELYDAVVEAMALP 267
Query: 229 -FPEPELVHYNPKEF------------DFGKKKAFPFRD 254
+PEPE+ P + DFGK + P ++
Sbjct: 268 SYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKE 306
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 167 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK--------YVTFDG 218
G+P+PI G G Q+ +V+D ARA V+ KA + +NI G + D
Sbjct: 218 GKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAG-ETYNIGGHNEKKNLDVVFTICDL 276
Query: 219 LARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKP 272
L KA + E + + + P D+ + K LGWKP
Sbjct: 277 LDEIVPKATSYRE---------QITYVADR--PGHDRRYAIDAGKISRELGWKP 319
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 67/314 (21%), Positives = 115/314 (36%), Gaps = 60/314 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + I Q+ G S + LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVD-----IVQRDTGGSAE---------LHVR-DLKDY 51
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 52 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 107
Query: 104 SSAGVYLKSDLLPHCE------------SRHKGKLNTESVLESKGVNWTSLRPVYIYGP- 150
SS+ VY +D++P E ++ G++ + GV ++R + GP
Sbjct: 108 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 167
Query: 151 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV---LGNEKASRQVFN 207
L + + ++ + + + G G Q +V+D A + A N
Sbjct: 168 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALN 227
Query: 208 ISGEKYVTFDGLARACAKAAGF-PEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKH 266
+ V +A+ A+ G PE LV P + +P ++ +V K
Sbjct: 228 VGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP------DGRGWPGDVKYMTLAVTKLMK 281
Query: 267 VLGWKPEFDLVEGL 280
+ GW+P E +
Sbjct: 282 LTGWRPTMTSAEAV 295
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 56/314 (17%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDY 61
GG FIG L LV+ G++V + + +EF S++ LH++ D KDY
Sbjct: 7 GGAGFIGSHLVDKLVELGYEVVVVDNLSS---------GRREFVNPSAE-LHVR-DLKDY 55
Query: 62 DFVKSSLSAKGFDVVYDINGR---EADEVEPILDALPN---------------LEQFIYC 103
+ KG DVV+ EPI+ N + ++
Sbjct: 56 SW---GAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA 111
Query: 104 SSAGVYLKSDLLPHCE------------SRHKGKLNTESVLESKGVNWTSLRPVYIYGP- 150
SS+ VY +D++P E ++ G++ + GV ++R + GP
Sbjct: 112 SSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 151 LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQV---LGNEKASRQVFN 207
L + + ++ + + + G G Q +V+D A + A N
Sbjct: 172 LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALN 231
Query: 208 ISGEKYVTFDGLARACAKAAGF-PEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKH 266
+ V +A+ A+ G PE LV P + +P ++ +V K
Sbjct: 232 VGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTP------DGRGWPGDVKYMTLAVTKLMK 285
Query: 267 VLGWKPEFDLVEGL 280
+ GW+P E +
Sbjct: 286 LTGWRPTMTSAEAV 299
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 127/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
SA VY + +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
SA VY +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 124/328 (37%), Gaps = 43/328 (13%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTL----FTRGKAPIAQQLPGESDQEFAEFSSKILHLKG 56
GG F+G L+ L +GH+VT+ FT K + + E+ + + L+++
Sbjct: 33 TGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEV 92
Query: 57 DRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLP 116
D+ + +S ++ + + + + A + + S++ VY ++ P
Sbjct: 93 DQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDPEVHP 152
Query: 117 HCE-------------SRHKGKLNTESVL----ESKGVNWTSLRPVYIYGP---LNYNPV 156
E +GK E+ + +GV R +GP N V
Sbjct: 153 QSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRV 212
Query: 157 EEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTF 216
F + G P+ + GSG Q +V DL V L N S V N+ + T
Sbjct: 213 VSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV-ALXNSNVSSPV-NLGNPEEHTI 270
Query: 217 DGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDL 276
A+ G E+ + + D K+K ++KAK LGW+P L
Sbjct: 271 LEFAQLIKNLVG-SGSEIQFLSEAQDDPQKRKP----------DIKKAKLXLGWEPVVPL 319
Query: 277 VEGLADSYNLDFGRGTYRKEADFSTDDM 304
EGL + + +RKE ++ ++
Sbjct: 320 EEGLNKAIHY------FRKELEYQANNQ 341
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCESRHKG---------KLNTESV---LESKGVNWTSLRPVYIYGPLN 152
SA VY +P+ ES G KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
+A VY + +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 TATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAP 31
GGT FIG L++LL GH+VTL +R P
Sbjct: 7 GGTGFIGTALTQLLNARGHEVTLVSRKPGP 36
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
+A VY + +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 127/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCESRHKG---------KLNTESV---LESKGVNWTSLRPVYIYGPLN 152
+A VY + +P+ ES G KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 139 WTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGN 198
W ++ P +IY L G P+P+ G+ V+D+A + +
Sbjct: 231 WRNVTPTFIYKALK--------------GMPLPLENGGVATRDFIFVEDVANGLIACAAD 276
Query: 199 EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFF 258
V+NI+ K + LA + G N E D K+ + + F
Sbjct: 277 GTPG-GVYNIASGKETSIADLATKINEITG---------NNTELDRLPKRPWDNSGKR-F 325
Query: 259 ASVEKAKHVLGWKPEFDLVEGL 280
S EKA+ LG+ + + +GL
Sbjct: 326 GSPEKARRELGFSADVSIDDGL 347
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
+A VY +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 133 ESKGVNWTSLRPVYIYGPLNYNP-----VEEWFFHRLKAGRPIPI-----PGSGIQVTQL 182
+S G+ W SLR +YGP +P V F R+ G P+ + PG V
Sbjct: 159 QSYGLKWVSLRYGNVYGP-RQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDY 217
Query: 183 GHVKDLARAFVQVLGNEKASRQVFNI-SGEKYVTFDGLARACAKAAGFPEPELVHYNPKE 241
+V D+A A L + + ++N+ +GE + T + L A A+AAG PE+ P+
Sbjct: 218 VYVGDVAEAHALALFSLEG---IYNVGTGEGHTTREVLM-AVAEAAG-KAPEVQPAPPRP 272
Query: 242 FDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL 280
D + P + GW+P+ EG+
Sbjct: 273 GDLERSVLSPLKLMAH-----------GWRPKVGFQEGI 300
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCESRHKG---------KLNTESV---LESKGVNWTSLRPVYIYGPLN 152
+A VY +P+ ES G KL E + L+ +W S+ + + P+
Sbjct: 124 AATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
SA VY + +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 SATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P +A KA L W+ L E D+++
Sbjct: 296 LPA----CWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 163 RLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARA 222
R G IPI G+G V +V+D RA VL + SR+++NIS + T + +
Sbjct: 198 RASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLL-KGESREIYNISAGEEKTNLEVVKI 256
Query: 223 CAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLAD 282
+ G E EL+ P D + K L W+P++ EG+
Sbjct: 257 ILRLMGKGE-ELIELVEDR---------PGHDLRYSLDSWKITRDLKWRPKYTFDEGIKK 306
Query: 283 S 283
+
Sbjct: 307 T 307
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 126/336 (37%), Gaps = 67/336 (19%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLF------TRGKAPIAQQLPG------ESDQEFAEFSS 49
GG+ +IG L++ GH V + R P+ ++L G E D +
Sbjct: 7 GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMT 66
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDV-----VYDINGREADEVEPILDALPNLEQFIYCS 104
+ILH F + L A G V YD N + + A N++ FI+ S
Sbjct: 67 EILHDHAIDTVIHF--AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSS 123
Query: 105 SAGVYLKSDLLPHCES---------RHKGKLNTESV---LESKGVNWTSLRPVYIYGPLN 152
A VY + +P+ ES K KL E + L+ +W S+ + + P+
Sbjct: 124 VATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW-SIALLRYFNPVG 182
Query: 153 YNPVEEW-------------FFHRLKAGR--PIPIPGS------GIQVTQLGHVKDLARA 191
+P + + ++ GR + I G+ G V HV DLA
Sbjct: 183 AHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242
Query: 192 FVQVLGN--EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKA 249
V + K ++N+ + + A +KA G +P H+ P+ ++
Sbjct: 243 HVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACG--KPVNYHFAPR-----REGD 295
Query: 250 FPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYN 285
P ++A KA L W+ L E D+++
Sbjct: 296 LPA----YWADASKADRELNWRVTRTLDEMAQDTWH 327
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 167 GRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKA 226
G+ +P+ G G+ V HV D A VL + +V+NI G T +
Sbjct: 225 GKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVG-EVYNIGGNNEKTNVEVVEQIITL 283
Query: 227 AGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADS 283
G + ++ + + G D+ + + EK K+ W+P++ +GL ++
Sbjct: 284 LGKTKKDIEYVTDR---LG-------HDRRYAINAEKXKNEFDWEPKYTFEQGLQET 330
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFS-----SKILHLK 55
+ G +G+ L+R L +GH+VT R AQ +P A+ + + I+HL+
Sbjct: 8 IAGCGDLGLELARRLTAQGHEVTGLRRS----AQPMPAGVQTLIADVTRPDTLASIVHLR 63
Query: 56 GDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVY---- 109
+ Y S S + + + Y + + L AL L+ + SS GVY
Sbjct: 64 PEILVYCVAASEYSDEHYRLSY------VEGLRNTLSALEGAPLQHVFFVSSTGVYGQEV 117
Query: 110 ---LKSDLLPHCES-RHKGKLNTESVLESKGVNWTSLRPVYIYGP 150
L D P + K L E++L + + T LR IYGP
Sbjct: 118 EEWLDEDTPPIAKDFSGKRMLEAEALLAA--YSSTILRFSGIYGP 160
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 133 ESKGVNWTSLRPVYIYGPL--NYNPVE-------EWFFHRLKAGRPIPIPGSGIQVTQLG 183
E +G+ +T RP GP N N L G PI + G Q
Sbjct: 177 EKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFT 236
Query: 184 HVKDLARAFVQVLGN--EKASRQVFNISG-EKYVTFDGLARACAKAAGFPEPELVHYNPK 240
++D A +++ N + ++ NI E + + L A F + L H+ P
Sbjct: 237 DIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLL--ASFEKHPLRHHFPP 294
Query: 241 EFDFGKKKAFPFRD------QHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDF 288
F ++ + +H+ S+ A L W+P+ D+ E + ++ LDF
Sbjct: 295 FAGFRVVESSSYYGKGYQDVEHYKPSIRNAHRCLDWEPKIDMQETIDET--LDF 346
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 41/297 (13%)
Query: 1 MGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKD 60
GGT F+G ++ + +G+ + TR A +D E+ + L D
Sbjct: 8 TGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAI-----NDYEYRVSDYTLEDLINQLND 62
Query: 61 YDFVKSSLSAKGFDVVYDINGREADEV--EPILDAL--PNLEQFIYCSSAGVYLKSDLLP 116
D V + +G I+ +E+ + + DA N+ +Y S+ Y LP
Sbjct: 63 VDAVVHLAATRGSQG--KISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLP 120
Query: 117 HCESR--------HKGKLNTESV----LESKGVNWTSLRPVYIYGPLNYNPVEEW----F 160
E KL E + KG+ +LR ++YG +N + F
Sbjct: 121 WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG---FNEKNNYXINRF 177
Query: 161 FHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLA 220
F + G + + + + + + KD A++ + L EK S FNI +T +A
Sbjct: 178 FRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS-GTFNIGSGDALTNYEVA 236
Query: 221 RACAKAAGFPEPELVHYNPKE--------FDFGK-KKAFPFRDQHFFASVEKAKHVL 268
A G + LV NP D K K+ F + FA+ + H+L
Sbjct: 237 NTINNAFGNKDNLLVK-NPNANEGIHSSYXDSSKAKELLDFSTDYNFATAVEEIHLL 292
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPG---ESDQEFAEFSSKILHLKGDR 58
GG+R IG+ +++ + +G V L + P +LPG + +E E + L + GD
Sbjct: 16 GGSRGIGLAIAKRVAADGANVALVAKSAEP-HPKLPGTIYTAAKEIEEAGGQALPIVGDI 74
Query: 59 KDYD 62
+D D
Sbjct: 75 RDGD 78
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 26/204 (12%)
Query: 97 LEQFIYCSSAGVY------------LKSDLLPHCESRHKGKLNTESVLESKGVNWTSLRP 144
++ F Y +S+ Y + L P+ +++ +L + G + LR
Sbjct: 145 VQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
Query: 145 VYIYGPLN-----YNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARA-FVQVLGN 198
++G Y V + + G + I G G ++++ +A +
Sbjct: 205 FNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAG 264
Query: 199 EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL-VHYNPKEFDFGKKKAFPFRDQHF 257
A QV+NI+ + + L A G E + H P DF + +H
Sbjct: 265 LDARNQVYNIAVGGRTSLNQLFFALRD--GLAENGVSYHREPVYRDFREGDV-----RHS 317
Query: 258 FASVEKAKHVLGWKPEFDLVEGLA 281
A + KA +LG+ P++D+ G+A
Sbjct: 318 LADISKAAKLLGYAPKYDVSAGVA 341
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 116 PHCESRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPG 174
P+ S+ L + + G++ R YGP + + F L G +P+ G
Sbjct: 150 PYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG 209
Query: 175 SGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL 234
G V + H D R VL +A ++++I G +T L + G
Sbjct: 210 DGANVREWVHTDDHCRGIALVLAGGRAG-EIYHIGGGLELTNRELTGILLDSLG------ 262
Query: 235 VHYNPKEFDFGKKKAFPFRDQH---FFASVEKAKHVLGWKPEFDLVEGLA 281
D+ + R H + K + LG++P+ +GLA
Sbjct: 263 -------ADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLA 305
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 135 KGVNWTSLRPVYIYGP---LNYNPVE------EWFFHRLKAGRPIPIPGSGIQVTQLGHV 185
+G+N+T RP GP Y P E F + G I + G Q +V
Sbjct: 189 EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYV 248
Query: 186 KDLARAFVQVLGNEK--ASRQVFNISG--EKYVTFDGLARACAKAAGFPEPELVHYNPK- 240
D A ++++ N A+ +++NI + + + AA FPE K
Sbjct: 249 DDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKL 308
Query: 241 -EFDFGKKKAFPFRD-QHFFASVEKAKHVLGWKPEFDLVEGL 280
E G ++D Q+ +E LGW P+F + L
Sbjct: 309 VETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDAL 350
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 116 PHCESRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNY-NPVEEWFFHRLKAGRPIPIPG 174
P+ S+ L + + G++ R YGP + + F L G +P+ G
Sbjct: 150 PYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG 209
Query: 175 SGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPEL 234
G V + H D R VL +A ++++I G +T L + G
Sbjct: 210 DGANVREWVHTDDHCRGIALVLAGGRAG-EIYHIGGGLELTNRELTGILLDSLG------ 262
Query: 235 VHYNPKEFDFGKKKAFPFRDQH---FFASVEKAKHVLGWKPEFDLVEGLA 281
D+ + R H + K + LG++P+ +GLA
Sbjct: 263 -------ADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLA 305
>pdb|1VCT|A Chain A, Crystal Structure Of Putative Potassium Channel Related
Protein From Pyrococcus Horikoshii
pdb|2BKN|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKO|A Chain A, Structure Analysis Of Unknown Function Protein
pdb|2BKP|A Chain A, Structure Analysis Of Unknown Function Protein
Length = 205
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 146 YIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKA 201
+I+GP N N +++AG + G G + T + H+K++AR ++V+GNE+A
Sbjct: 161 WIFGP-NEN-------FKIRAGDVLI--GRGTR-TSIDHLKEIARGAIRVIGNERA 205
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 166 AGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEK 212
AG+ +P+ G+G Q+ +V+D ARA V K + +NI G
Sbjct: 210 AGKSLPVYGNGQQIRDWLYVEDHARALYCVATTGKVG-ETYNIGGHN 255
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 134 SKGVNWTSLRPVYIYGP-----LNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 188
S G+ SLR V++ GP L+Y P R+ G I I +GI L D
Sbjct: 5 SSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS 64
Query: 189 ARAFVQVLGNEKAS 202
+Q LG+ +
Sbjct: 65 GNWVIQDLGSSNGT 78
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3BWW|A Chain A, Crystal Structure Of A Duf692 Family Protein (Hs_1138)
From Haemophilus Somnus 129pt At 2.20 A Resolution
Length = 307
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 182 LGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVH 236
LG+ +DLA F+Q+ N++ Q I+ E ++ G AR P L+H
Sbjct: 8 LGYRRDLAEGFLQLRNNDRI--QFXEIAPENWIKXGGFARYQFDKVAEKIPILIH 60
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 50 KILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADE 86
KIL + ++ D +K +++ +G++VV NGREA E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE 39
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
Aerophilum
Length = 461
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 24 LFTRGKAPIAQ------QLPGESDQEFAEFSSKI--------LHLKGDRKDYDFVKSSLS 69
+ T GKA + + P E D E + S I + L KD D V+S L+
Sbjct: 160 VITGGKAIVVEGKDYDISTPAEEDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLT 219
Query: 70 AKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPH 117
GF + A ++E A+ NLE+ + CS V + DL H
Sbjct: 220 ELGF------QSQVAVKIE-TKGAVNNLEELVQCSDYVVVARGDLGLH 260
>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr6
Length = 341
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 76 VYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCESRHKGKLNTES 130
V D NG+E V+P++DA+ +Q + + L + +LP+ + G+ ES
Sbjct: 168 VTDKNGKEPQAVQPVIDAIXAADQIVLGPGS---LFTSILPNLTIGNIGRAVCES 219
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 36/216 (16%)
Query: 90 ILDALPN--LEQFIYCSSAGVY------------LKSDLLPHCESRHKGKLNTESVLESK 135
IL A N ++ F Y +S+ Y + + L P+ +++ ++ + +
Sbjct: 134 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 193
Query: 136 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 188
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 194 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 251
Query: 189 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 247
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 252 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 302
Query: 248 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 280
K FR +H A V KA +L ++P + EGL
Sbjct: 303 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 338
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 36/216 (16%)
Query: 90 ILDALPN--LEQFIYCSSAGVY------------LKSDLLPHCESRHKGKLNTESVLESK 135
IL A N ++ F Y +S+ Y + + L P+ +++ ++ + +
Sbjct: 128 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 187
Query: 136 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 188
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 188 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 245
Query: 189 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 247
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 246 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 296
Query: 248 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 280
K FR +H A V KA +L ++P + EGL
Sbjct: 297 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 332
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 2 GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAE 46
GG FIG L+R LV G +VT+ + P +P E +F E
Sbjct: 14 GGAGFIGGHLARALVASGEEVTVLDDLRVP--PMIPPEGTGKFLE 56
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 36/216 (16%)
Query: 90 ILDALPN--LEQFIYCSSAGVY------------LKSDLLPHCESRHKGKLNTESVLESK 135
IL A N ++ F Y +S+ Y + + L P+ +++ ++ + +
Sbjct: 147 ILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY 206
Query: 136 GVNWTSLRPVYIYGPLNYNP-------VEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDL 188
G LR ++G +P + +W LK G + I G G ++ ++
Sbjct: 207 GFKTIGLRYFNVFGRRQ-DPNGAYAAVIPKWTAAMLK-GDDVYINGDGETSRDFCYIDNV 264
Query: 189 ARA-FVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKK 247
+ + L + A ++N++ T + L+ + E L+H+ D
Sbjct: 265 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYI-----YDELNLIHH----IDKLSI 315
Query: 248 KAFPFRD---QHFFASVEKAKHVLGWKPEFDLVEGL 280
K FR +H A V KA +L ++P + EGL
Sbjct: 316 KYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGL 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,056,823
Number of Sequences: 62578
Number of extensions: 445866
Number of successful extensions: 1198
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 53
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)