Query 021332
Match_columns 314
No_of_seqs 289 out of 1607
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 84.9 0.4 1.4E-05 31.9 1.7 32 142-173 14-45 (56)
2 3j21_g 50S ribosomal protein L 78.9 0.41 1.4E-05 31.4 0.1 31 143-173 10-40 (51)
3 1x4u_A Zinc finger, FYVE domai 70.3 3.3 0.00011 29.7 3.1 25 147-171 14-40 (84)
4 1y02_A CARP2, FYVE-ring finger 70.1 1.7 6E-05 33.7 1.6 25 147-171 19-45 (120)
5 1z2q_A LM5-1; membrane protein 67.4 4.1 0.00014 29.3 3.1 26 146-171 20-47 (84)
6 1wfk_A Zinc finger, FYVE domai 62.0 4.8 0.00016 29.3 2.6 25 147-171 9-35 (88)
7 2yw8_A RUN and FYVE domain-con 62.0 4.9 0.00017 28.7 2.6 26 146-171 18-45 (82)
8 1wfl_A Zinc finger protein 216 61.8 10 0.00034 26.7 4.0 40 147-187 25-69 (74)
9 1vfy_A Phosphatidylinositol-3- 59.5 4.1 0.00014 28.4 1.8 24 148-171 12-37 (73)
10 1joc_A EEA1, early endosomal a 59.0 4 0.00014 31.8 1.8 25 147-171 69-95 (125)
11 3zyq_A Hepatocyte growth facto 56.3 5.2 0.00018 34.3 2.2 25 147-171 164-190 (226)
12 1dvp_A HRS, hepatocyte growth 55.3 8.3 0.00029 32.8 3.4 25 147-171 161-187 (220)
13 3t7l_A Zinc finger FYVE domain 52.6 14 0.00047 26.8 3.7 25 147-171 20-46 (90)
14 2knc_B Integrin beta-3; transm 45.7 21 0.00073 25.3 3.7 27 247-273 24-50 (79)
15 2cr8_A MDM4 protein; ZF-ranbp 41.7 10 0.00035 24.5 1.3 21 149-169 13-33 (53)
16 2c6a_A Ubiquitin-protein ligas 36.4 14 0.00046 23.4 1.2 21 149-169 15-35 (46)
17 3u5e_m 60S ribosomal protein L 30.1 14 0.00047 28.4 0.6 27 144-170 90-118 (128)
18 2jrp_A Putative cytoplasmic pr 26.7 24 0.00082 25.2 1.3 18 161-179 18-35 (81)
19 2dkt_A Ring finger and CHY zin 26.5 17 0.00058 28.9 0.5 28 146-173 82-110 (143)
20 3gj3_B Nuclear pore complex pr 25.4 30 0.001 20.2 1.3 19 150-168 10-28 (33)
21 1wfh_A Zinc finger (AN1-like) 23.6 1.1E+02 0.0037 20.7 4.1 40 147-187 15-59 (64)
22 1wff_A Riken cDNA 2810002D23 p 23.5 66 0.0022 23.1 3.1 41 146-187 24-70 (85)
23 3jyw_9 60S ribosomal protein L 23.2 46 0.0016 23.2 2.2 27 147-173 26-56 (72)
24 1wg2_A Zinc finger (AN1-like) 23.1 1.2E+02 0.0041 20.5 4.2 40 147-187 15-59 (64)
25 2vrw_B P95VAV, VAV1, proto-onc 23.0 32 0.0011 31.7 1.8 27 147-173 357-386 (406)
26 2xzm_5 Ribosomal protein S26E 22.9 27 0.00093 26.7 1.0 20 160-179 19-38 (119)
27 3u5c_a 40S ribosomal protein S 22.0 28 0.00096 26.6 1.0 19 160-178 19-37 (119)
28 1ffk_W Ribosomal protein L37AE 20.7 43 0.0015 23.4 1.6 28 146-173 26-57 (73)
29 3izc_m 60S ribosomal protein R 20.3 47 0.0016 24.2 1.8 27 147-173 36-66 (92)
30 2elu_A Zinc finger protein 406 20.2 24 0.00081 20.5 0.2 8 162-169 10-17 (37)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=84.90 E-value=0.4 Score=31.91 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=26.1
Q ss_pred cCCCCCCCCcccCCCCCCCccccccccceeec
Q 021332 142 EGSELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (314)
Q Consensus 142 ~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (314)
....+...|..|..+-|+|+.-|+.|+..-+|
T Consensus 14 k~~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 14 QRVFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp TCSCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HHHhchhhhccccCcCCcccccccCCCCCCCC
Confidence 44456778999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.94 E-value=0.41 Score=31.39 Aligned_cols=31 Identities=6% Similarity=-0.128 Sum_probs=25.2
Q ss_pred CCCCCCCCcccCCCCCCCccccccccceeec
Q 021332 143 GSELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (314)
Q Consensus 143 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 173 (314)
...+...|+.|..+.|.++..|+.||.--+|
T Consensus 10 r~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 10 RIFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp HSSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HHhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3445678999999999999999999875443
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.30 E-value=3.3 Score=29.73 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.2
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... --.|-|||+.||+-+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEE
Confidence 4568888753 346889999998744
No 4
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.15 E-value=1.7 Score=33.68 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.3
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... -..|-|||+.||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred cCcccCcCCccccccccccCCCCCCee
Confidence 3568888652 245889999998743
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.42 E-value=4.1 Score=29.26 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=18.7
Q ss_pred CCCCCcccCCC--CCCCcccccccccee
Q 021332 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
+...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 35678888753 235889999998754
No 6
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=61.99 E-value=4.8 Score=29.27 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.1
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... .-.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 4568888753 236889999998754
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.98 E-value=4.9 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=18.4
Q ss_pred CCCCCcccCCC--CCCCcccccccccee
Q 021332 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
+...|..|... --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34568888752 235889999998854
No 8
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.85 E-value=10 Score=26.66 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=26.0
Q ss_pred CCCCcccCCCCCCCccccccccc--ee-ec--ccccCccccccccc
Q 021332 147 GVDPDNENSLSRKRVRYCKICKA--HV-EG--FDHHCPAFGNCIGQ 187 (314)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--CV-~r--~DHHCpWi~nCVG~ 187 (314)
.+.|..|+...-+-...|+ |+. |- -| =||.|++-+.=.|.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhch
Confidence 5679999876444457788 765 22 22 38999887655443
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.51 E-value=4.1 Score=28.39 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.1
Q ss_pred CCCcccCCC--CCCCcccccccccee
Q 021332 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
..|..|... .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888753 235889999998754
No 10
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.03 E-value=4 Score=31.78 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.0
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... -..|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4568888753 246889999998754
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.33 E-value=5.2 Score=34.34 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=17.6
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... --.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 4578888742 234789999998855
No 12
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.32 E-value=8.3 Score=32.77 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.2
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... --.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3678888742 235889999998855
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.59 E-value=14 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.4
Q ss_pred CCCCcccCCC--CCCCcccccccccee
Q 021332 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (314)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (314)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4568888742 234789999998754
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.66 E-value=21 Score=25.28 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhCchhHHhhhhc
Q 021332 247 LWQAVFFMWHIYCVCFNVRTDEWVNWK 273 (314)
Q Consensus 247 i~~~~ll~~q~~lI~~n~TT~E~~~~~ 273 (314)
+-+..++++-+..-....-.++..+.+
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566665555555555555433
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=41.69 E-value=10 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=15.6
Q ss_pred CCcccCCCCCCCccccccccc
Q 021332 149 DPDNENSLSRKRVRYCKICKA 169 (314)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (314)
.|.+|+..-||--.||..|-.
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 488888877887778777643
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=36.40 E-value=14 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.4
Q ss_pred CCcccCCCCCCCccccccccc
Q 021332 149 DPDNENSLSRKRVRYCKICKA 169 (314)
Q Consensus 149 ~C~~C~~~kP~Rs~HC~~C~~ 169 (314)
.|..|+..-||--.||..|-.
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTCC
T ss_pred ecccccccCCCccchhhHHHh
Confidence 488898888888888877744
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=30.15 E-value=14 Score=28.45 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=22.6
Q ss_pred CCCCCCCcccCCCCCCCcccccc--ccce
Q 021332 144 SELGVDPDNENSLSRKRVRYCKI--CKAH 170 (314)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (314)
..+...|..|..+-|+|++.|+. |+..
T Consensus 90 n~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 90 NCDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp HTSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred hcceEeeccccccCCchhhccchhhCCCc
Confidence 34567899999999999999994 8764
No 18
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.72 E-value=24 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=8.2
Q ss_pred ccccccccceeecccccCc
Q 021332 161 VRYCKICKAHVEGFDHHCP 179 (314)
Q Consensus 161 s~HC~~C~~CV~r~DHHCp 179 (314)
.+||..|++-+.+-- +||
T Consensus 18 ~~~C~~C~~~~~~~a-fCP 35 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCP 35 (81)
T ss_dssp EEECTTTCCEEEEEE-ECS
T ss_pred ceECccccccCCCcc-cCc
Confidence 444555555444333 444
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.55 E-value=17 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=16.7
Q ss_pred CCCCCcccCCCCCCC-ccccccccceeec
Q 021332 146 LGVDPDNENSLSRKR-VRYCKICKAHVEG 173 (314)
Q Consensus 146 ~~~~C~~C~~~kP~R-s~HC~~C~~CV~r 173 (314)
...||..|+.+.+.+ ..||..||-|-..
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIG 110 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEES
T ss_pred eeeEeceeecccCCCceecCCCCCceecc
Confidence 355788888765432 4556666666543
No 20
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=25.40 E-value=30 Score=20.21 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.5
Q ss_pred CcccCCCCCCCcccccccc
Q 021332 150 PDNENSLSRKRVRYCKICK 168 (314)
Q Consensus 150 C~~C~~~kP~Rs~HC~~C~ 168 (314)
|..|..+-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 7778777777777777775
No 21
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.62 E-value=1.1e+02 Score=20.70 Aligned_cols=40 Identities=13% Similarity=-0.036 Sum_probs=25.9
Q ss_pred CCCCcccCCCCCCCccccccccc--ee---ecccccCccccccccc
Q 021332 147 GVDPDNENSLSRKRVRYCKICKA--HV---EGFDHHCPAFGNCIGQ 187 (314)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--CV---~r~DHHCpWi~nCVG~ 187 (314)
.+.|..|+..--.=.-.|+ |+. |- .--||.|+.-+.=.|.
T Consensus 15 ~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp CCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCCC
T ss_pred CCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHHH
Confidence 5779999876554467784 765 22 2238999877655554
No 22
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.55 E-value=66 Score=23.11 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=27.1
Q ss_pred CCCCCcccCCCCCC-Cccccccccc--ee---ecccccCccccccccc
Q 021332 146 LGVDPDNENSLSRK-RVRYCKICKA--HV---EGFDHHCPAFGNCIGQ 187 (314)
Q Consensus 146 ~~~~C~~C~~~kP~-Rs~HC~~C~~--CV---~r~DHHCpWi~nCVG~ 187 (314)
..+.|..|+..--. ..-+|+ |+. |- ..-||.|+.-+.=.|.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~gr 70 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAGR 70 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSCC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHHH
Confidence 35679999876666 367786 764 33 3359999876654443
No 23
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.15 E-value=46 Score=23.15 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=19.5
Q ss_pred CCCCcccCCCCCCC----ccccccccceeec
Q 021332 147 GVDPDNENSLSRKR----VRYCKICKAHVEG 173 (314)
Q Consensus 147 ~~~C~~C~~~kP~R----s~HC~~C~~CV~r 173 (314)
...|+.|...+-.| -.||+.|++=++.
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 56788887666665 3589999886654
No 24
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.12 E-value=1.2e+02 Score=20.50 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=25.4
Q ss_pred CCCCcccCCCCCCCccccccccc--e---eecccccCccccccccc
Q 021332 147 GVDPDNENSLSRKRVRYCKICKA--H---VEGFDHHCPAFGNCIGQ 187 (314)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHCpWi~nCVG~ 187 (314)
.+.|..|+..--.-.-.| .|+. | -.--||.|+.-+.=.|.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~gr 59 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVGS 59 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSCC
T ss_pred CCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHhH
Confidence 467999987644435677 5655 2 22239999877655554
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.00 E-value=32 Score=31.66 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=19.3
Q ss_pred CCCCcccCCCC---CCCccccccccceeec
Q 021332 147 GVDPDNENSLS---RKRVRYCKICKAHVEG 173 (314)
Q Consensus 147 ~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 173 (314)
..+|..|...- -.|-|||+.|+..|-+
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccch
Confidence 56899998533 3588999998765543
No 26
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=22.87 E-value=27 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=15.0
Q ss_pred CccccccccceeecccccCc
Q 021332 160 RVRYCKICKAHVEGFDHHCP 179 (314)
Q Consensus 160 Rs~HC~~C~~CV~r~DHHCp 179 (314)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKR 38 (119)
T ss_dssp CEEECTTTCCEEETTTSEEC
T ss_pred ccEeeCCccccCcccceeEE
Confidence 34589999999998555543
No 27
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=22.00 E-value=28 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=14.3
Q ss_pred CccccccccceeecccccC
Q 021332 160 RVRYCKICKAHVEGFDHHC 178 (314)
Q Consensus 160 Rs~HC~~C~~CV~r~DHHC 178 (314)
+.-||..|++||.+----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIK 37 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIK 37 (119)
T ss_dssp CEEECTTTCCEEEGGGSCE
T ss_pred ccEeeccccccccccceee
Confidence 3458999999999855444
No 28
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.70 E-value=43 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=21.3
Q ss_pred CCCCCcccCCCCCCCc----cccccccceeec
Q 021332 146 LGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (314)
Q Consensus 146 ~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 173 (314)
....|+.|...+-.|. .+|+.|++-++.
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 4678999987666664 789999988764
No 29
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.31 E-value=47 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCCCcccCCCCCCCc----cccccccceeec
Q 021332 147 GVDPDNENSLSRKRV----RYCKICKAHVEG 173 (314)
Q Consensus 147 ~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 173 (314)
...|+.|...+-.|. .||+.|+.-++.
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 567999987666663 599999987765
No 30
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.23 E-value=24 Score=20.52 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.3
Q ss_pred cccccccc
Q 021332 162 RYCKICKA 169 (314)
Q Consensus 162 ~HC~~C~~ 169 (314)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 48998876
Done!