Query 021334
Match_columns 314
No_of_seqs 157 out of 1067
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 3.8E-57 8.2E-62 438.5 22.3 284 24-307 1-292 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 3.1E-50 6.7E-55 393.7 21.8 245 23-307 4-267 (451)
3 PRK11412 putative uracil/xanth 100.0 3.4E-44 7.4E-49 353.6 25.0 238 35-307 8-262 (433)
4 TIGR03616 RutG pyrimidine util 100.0 3E-41 6.6E-46 333.3 27.1 247 22-308 17-270 (429)
5 PRK10720 uracil transporter; P 100.0 1.5E-40 3.2E-45 328.4 23.9 230 23-306 2-246 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 5.9E-39 1.3E-43 316.0 24.3 236 31-307 1-256 (415)
7 PF00860 Xan_ur_permease: Perm 100.0 2.9E-38 6.3E-43 308.6 17.0 239 35-307 1-254 (389)
8 TIGR03173 pbuX xanthine permea 100.0 3.8E-37 8.2E-42 302.2 21.7 226 41-307 1-241 (406)
9 TIGR00843 benE benzoate transp 99.9 1.5E-23 3.2E-28 203.9 21.5 217 36-301 22-239 (395)
10 PF03594 BenE: Benzoate membra 99.9 5.6E-22 1.2E-26 190.3 20.2 212 36-299 6-221 (378)
11 COG3135 BenE Uncharacterized p 99.9 1.7E-20 3.8E-25 177.2 19.8 213 36-300 21-237 (402)
12 COG2252 Xanthine/uracil/vitami 98.1 0.0004 8.7E-09 69.0 19.9 187 24-240 8-214 (436)
13 COG0659 SUL1 Sulfate permease 98.1 0.00031 6.7E-09 72.2 18.7 207 51-306 32-270 (554)
14 PRK11660 putative transporter; 97.5 0.0098 2.1E-07 61.4 19.0 119 34-179 29-147 (568)
15 TIGR00815 sulP high affinity s 97.3 0.02 4.4E-07 59.0 18.1 126 35-180 15-142 (563)
16 PF11840 DUF3360: Protein of u 94.6 0.83 1.8E-05 44.9 13.1 240 23-307 54-307 (492)
17 KOG0236 Sulfate/bicarbonate/ox 93.8 2.2 4.8E-05 45.2 15.7 100 76-179 111-210 (665)
18 KOG1172 Na+-independent Cl/HCO 84.6 67 0.0014 35.1 17.4 182 42-240 363-595 (876)
19 TIGR00834 ae anion exchange pr 83.7 75 0.0016 35.0 18.5 39 201-239 571-615 (900)
20 PLN00028 nitrate transmembrane 77.9 73 0.0016 31.7 14.5 96 6-101 6-108 (476)
21 PF00916 Sulfate_transp: Sulfa 71.3 3.3 7.1E-05 38.3 2.7 28 156-183 6-33 (280)
22 TIGR00843 benE benzoate transp 66.9 1.4E+02 0.0031 29.7 14.3 166 34-236 221-393 (395)
23 PF05977 MFS_3: Transmembrane 55.7 2.2E+02 0.0047 29.3 12.7 136 23-175 210-348 (524)
24 COG0659 SUL1 Sulfate permease 48.2 91 0.002 32.4 8.6 29 155-183 338-366 (554)
25 PF06946 Phage_holin_5: Phage 41.4 58 0.0013 25.8 4.6 35 205-239 22-56 (93)
26 PRK03699 putative transporter; 40.7 1.5E+02 0.0032 28.3 8.4 37 54-90 227-263 (394)
27 PRK11660 putative transporter; 37.4 1.6E+02 0.0035 30.5 8.5 27 156-182 370-396 (568)
28 COG4129 Predicted membrane pro 35.4 3.9E+02 0.0085 26.0 10.3 76 78-175 17-92 (332)
29 PF06570 DUF1129: Protein of u 31.0 3.8E+02 0.0082 23.8 12.8 85 133-238 80-166 (206)
30 TIGR00815 sulP high affinity s 30.1 2.6E+02 0.0057 28.9 8.7 40 141-182 337-376 (563)
31 TIGR03173 pbuX xanthine permea 27.5 3.7E+02 0.0079 26.4 8.9 77 74-173 255-331 (406)
32 PRK09705 cynX putative cyanate 26.6 3.5E+02 0.0076 25.8 8.5 37 54-91 227-263 (393)
33 PF04172 LrgB: LrgB-like famil 26.3 1.8E+02 0.0038 26.5 5.9 78 155-238 11-94 (215)
34 PRK12911 bifunctional preprote 25.2 4.5E+02 0.0098 30.6 9.7 71 160-237 1287-1385(1403)
35 TIGR01299 synapt_SV2 synaptic 24.5 9.1E+02 0.02 26.1 13.0 41 61-101 195-239 (742)
36 PRK11663 regulatory protein Uh 24.3 4.9E+02 0.011 25.2 9.1 44 53-97 44-91 (434)
37 PF05437 AzlD: Branched-chain 23.4 3.5E+02 0.0075 20.8 6.9 19 155-173 31-49 (99)
38 TIGR00801 ncs2 uracil-xanthine 23.2 3.4E+02 0.0074 26.8 7.8 35 139-173 313-347 (415)
39 PF06612 DUF1146: Protein of u 22.7 1E+02 0.0022 21.3 2.8 22 216-237 25-46 (48)
40 KOG2325 Predicted transporter/ 22.2 96 0.0021 31.8 3.7 84 28-111 27-119 (488)
41 PF00860 Xan_ur_permease: Perm 22.0 4.6E+02 0.0099 25.6 8.4 112 42-177 238-350 (389)
42 TIGR00710 efflux_Bcr_CflA drug 21.7 1.9E+02 0.004 26.9 5.4 46 30-76 205-250 (385)
43 TIGR00881 2A0104 phosphoglycer 21.7 2E+02 0.0042 26.3 5.5 37 54-90 238-274 (379)
44 PRK05122 major facilitator sup 21.0 3E+02 0.0064 26.0 6.7 71 27-100 10-87 (399)
45 TIGR00844 c_cpa1 na(+)/h(+) an 20.8 4.5E+02 0.0098 28.8 8.5 44 139-185 14-57 (810)
46 KOG1292 Xanthine/uracil transp 20.8 4.5E+02 0.0097 27.1 7.9 150 70-241 303-465 (510)
47 PRK04288 antiholin-like protei 20.6 5.9E+02 0.013 23.5 8.1 69 163-237 36-109 (232)
48 PRK11273 glpT sn-glycerol-3-ph 20.4 8E+02 0.017 23.9 9.9 46 53-100 50-99 (452)
49 TIGR00883 2A0106 metabolite-pr 20.0 6.7E+02 0.015 22.8 10.0 44 54-97 241-288 (394)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.8e-57 Score=438.50 Aligned_cols=284 Identities=55% Similarity=1.012 Sum_probs=267.5
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHhCCccceeeccc
Q 021334 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS 102 (314)
Q Consensus 24 ~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~-~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~S 102 (314)
+.|++||.|||.+++++|+||++.|+++++++|.++++++|.+++|. +++||+.+|++||.|++|+++|.|||++||+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 47999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcccCCCC---CCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccc
Q 021334 103 YTFVPSTISIILAGRFSNYS---GDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 179 (314)
Q Consensus 103 fa~l~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL 179 (314)
|+|++|+.++.+.+++.|+. +.+.+.|++.++++|||+++++++++++|++|+++++.|++.|+++.|+++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 99999999999988888853 223457999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccchhhHHHHHHHHHHHHHH--hchhh--hccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCcccc
Q 021334 180 YEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVI--KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASC 255 (314)
Q Consensus 180 ~~~~~~~~~~~~~i~~~~l~~iv~~s~~--~~~~~--~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~ 255 (314)
++.+.+.++.||+++++.+++++++++| +++.. ..+++++++|++++++.+.|++|++++..|+||.+++.++++|
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 53322 2346799999999999999999999999999999999999999
Q ss_pred ccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 256 RTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 256 ~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
|+|.+.+++++||+++|||+|||.|+||.+..+.|+...+++++||+|+...
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a 292 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIA 292 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 9999888999999999999999999999999999999999999999998653
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.1e-50 Score=393.69 Aligned_cols=245 Identities=27% Similarity=0.492 Sum_probs=225.5
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccee
Q 021334 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (314)
Q Consensus 23 ~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv 98 (314)
+..+..|||+|+.+++++|+||+++||++++++|++++++.++++||+++++|+++++||++|++|++ .|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34455788999999999999999999999999999999999999999999999999999999999997 56699999
Q ss_pred eccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhcCchhHHHHHHHhhc
Q 021334 99 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGF 177 (314)
Q Consensus 99 ~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~-~l~~~fpP~V~g~vv~lIGl 177 (314)
+|+||+|++|++++..+.+ ++++.++|+.+++|+++++++. .++ |++|+|||+|+|+++++||+
T Consensus 84 lG~sFafi~p~i~~~~~~g-------------~~~~~~~G~ii~ag~~~~li~~--~~~~~l~rlfPPvVtG~Vi~~IGl 148 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG-------------DGIAALLGGIIAAGLVYFLISP--IVKIRLARLFPPVVTGPVVLVIGL 148 (451)
T ss_pred EechHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCceEEeEeeeehh
Confidence 9999999999999886532 3589999999999999999997 567 99999999999999999999
Q ss_pred cchhcccccccc--------------chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCC
Q 021334 178 GLYEFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 243 (314)
Q Consensus 178 sL~~~~~~~~~~--------------~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~ 243 (314)
+|.+++++++.+ +..++..++++++++++|.|+ ++|++|||+|+++||++|+.+|+
T Consensus 149 sL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~--- 218 (451)
T COG2233 149 SLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM--- 218 (451)
T ss_pred hhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC---
Confidence 999999987642 467888999999999999965 59999999999999999999985
Q ss_pred CCCCCccCccccccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 244 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 244 ~~~~~~~~~~~~~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
+|+++ +.++|||++|+|++||+ +|||+++++++++++++++|++||+.-
T Consensus 219 -------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A 267 (451)
T COG2233 219 -------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITA 267 (451)
T ss_pred -------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 68987 89999999999999999 999999999999999999999999863
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=3.4e-44 Score=353.58 Aligned_cols=238 Identities=17% Similarity=0.346 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHh
Q 021334 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (314)
Q Consensus 35 ~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~ 114 (314)
.+++++|+||+++|+++++++|+++++++|+|++|+++++|+++++|||+|++|+.+|+|||++||+||+|+++++++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhcccccccc-----
Q 021334 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK----- 189 (314)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~~----- 189 (314)
.....+. .++..++..+|+.+++|++++++|++|+++|+||+|||+|+|+++++||++|++.+++++.+
T Consensus 88 ~~~~~g~------~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~ 161 (433)
T PRK11412 88 GEASRGT------PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI 161 (433)
T ss_pred cccccCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC
Confidence 2110000 01123455667899999999999999999999999999999999999999999999886521
Q ss_pred ----------chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHH-HhhhcCCCCCCCccCccccccC
Q 021334 190 ----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGGAYNDAAPKTQASCRTD 258 (314)
Q Consensus 190 ----------~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~-~~g~~g~~~~~~~~~~~~~~~d 258 (314)
++.+++.++++++.++++.| +++|++|+++|+++||++|. .+| .|
T Consensus 162 ~~~~~~~~~~~~~~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~g-----------------~d 217 (433)
T PRK11412 162 ADPNGKIQLPPFGLSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCFP-----------------SS 217 (433)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhC-----------------CC
Confidence 23466667777777777774 56999999999999999866 443 26
Q ss_pred ccCcCCCCCccccCCCCCcccCc-ccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 259 RAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 259 ~s~~v~~apwf~~P~p~~fg~P~-F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
++. +.+++|. +++||.|+ |||+++++++++++++++|++||+.-
T Consensus 218 ~~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a 262 (433)
T PRK11412 218 HSL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRG 262 (433)
T ss_pred cch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 6888994 34599995 99999999999999999999999753
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=3e-41 Score=333.29 Aligned_cols=247 Identities=19% Similarity=0.344 Sum_probs=207.2
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCccceeec
Q 021334 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMG 100 (314)
Q Consensus 22 ~~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~-~G~rlPiv~G 100 (314)
++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+. +|+|+|++||
T Consensus 17 ~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G 85 (429)
T TIGR03616 17 EHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLG 85 (429)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEc
Confidence 44889999999999999999999999999999999997 68876 579999999999974 7999999999
Q ss_pred cccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhh---HHHHHhhcCchhHHHHHHHhhc
Q 021334 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGL---WRNVTRFLSPLSVVPLISLVGF 177 (314)
Q Consensus 101 ~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~---~~~l~~~fpP~V~g~vv~lIGl 177 (314)
+||+|+++.+++..... .+. +.++++++|+.+++|++++++|++.. .+|++|+|||+|+|+++++||+
T Consensus 86 ~sf~f~~~~~~~~~~~~-~~~--------~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 86 SSAAFVGAVIAATGYNG-QGT--------NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred CcHHHHHHHHHHHhhcc-cCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999887643211 100 14689999999999999999998743 3889999999999999999999
Q ss_pred cchhcccccccc---chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccc
Q 021334 178 GLYEFGFPGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQAS 254 (314)
Q Consensus 178 sL~~~~~~~~~~---~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~ 254 (314)
++++.++++.++ +...++++++.+++++++.| +++|++++++|+++||++|+.++.. +. ..
T Consensus 157 sL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~-------~~l~~~avLiGivvG~iva~~l~~~--~g-------~~ 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTR-------GMLQRLLILVGLIAAYLAYFILTNV--FG-------LG 220 (429)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh--cC-------CC
Confidence 999999987653 12257777777777887775 4699999999999999999986421 10 01
Q ss_pred cccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021334 255 CRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSFY 308 (314)
Q Consensus 255 ~~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~~ 308 (314)
+++|++. +.+++|+++| +|+.|+||+++++.+++.++++++|++||..-.
T Consensus 221 ~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~ 270 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAV 270 (429)
T ss_pred ccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2478876 7899999999 477899999999999999999999999998754
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.5e-40 Score=328.41 Aligned_cols=230 Identities=19% Similarity=0.349 Sum_probs=200.8
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeecc
Q 021334 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMGG 101 (314)
Q Consensus 23 ~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~-G~rlPiv~G~ 101 (314)
+..|++|||||+.+++++|+||+++|+++++++|+++ |+|+++ ++++||++|++|++. |.|+|++||+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5689999999999999999999999999999999987 788864 789999999999985 5699999999
Q ss_pred ccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhh--h-HHHHHhhcCchhHHHHHHHhhcc
Q 021334 102 SYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG--L-WRNVTRFLSPLSVVPLISLVGFG 178 (314)
Q Consensus 102 Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg--~-~~~l~~~fpP~V~g~vv~lIGls 178 (314)
||+|+++++.+.. +++++++|+++++|+++++++++. . -+|++|+|||.|+|+++++||++
T Consensus 71 sfa~i~~~~~~~~----------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~ 134 (428)
T PRK10720 71 SFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 134 (428)
T ss_pred cHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999887753 258999999999999999999862 1 45799999999999999999999
Q ss_pred chhccccccc-----------cchhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 021334 179 LYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDA 247 (314)
Q Consensus 179 L~~~~~~~~~-----------~~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~ 247 (314)
+.+.++++.+ .++.+++.+++++++++++.| |++|++++++|+++||++++.+|.
T Consensus 135 L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~------- 200 (428)
T PRK10720 135 LAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM------- 200 (428)
T ss_pred hHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC-------
Confidence 9999886543 135677777777777776764 569999999999999999999975
Q ss_pred CccCccccccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHH
Q 021334 248 APKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSS 306 (314)
Q Consensus 248 ~~~~~~~~~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~ 306 (314)
.|++. +.+++|+++|. |+.|+||+..++.+.+.+++.+.|++||..
T Consensus 201 ---------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~ 246 (428)
T PRK10720 201 ---------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLV 246 (428)
T ss_pred ---------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46664 77899999995 567999999999999999999999999875
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=5.9e-39 Score=316.00 Aligned_cols=236 Identities=26% Similarity=0.493 Sum_probs=208.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-C--CccceeeccccchHH
Q 021334 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-G--TRLPAVMGGSYTFVP 107 (314)
Q Consensus 31 ~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~-G--~rlPiv~G~Sfa~l~ 107 (314)
|||+++++++|+||+++|+++++++|++++++. +|++|+++++|++++++|++|++|++. + .|+|.+||+||+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 799999999999999999999999999999999 999999999999999999999999974 3 347999999999999
Q ss_pred HHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh--hh-HHHHHhhcCchhHHHHHHHhhccchhccc
Q 021334 108 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GL-WRNVTRFLSPLSVVPLISLVGFGLYEFGF 184 (314)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~t--g~-~~~l~~~fpP~V~g~vv~lIGlsL~~~~~ 184 (314)
+.+.+... +++++++|+.+++|+++++++++ +. -+|++|+|||.|+|+++++||++|.+.++
T Consensus 80 ~~~~~~~~---------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l 144 (415)
T TIGR00801 80 PMIAIGSG---------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAV 144 (415)
T ss_pred HHHHHHhc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHH
Confidence 98877542 36899999999999999999984 32 25789999999999999999999999999
Q ss_pred cccc--------------cchhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 021334 185 PGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (314)
Q Consensus 185 ~~~~--------------~~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~ 250 (314)
++++ .++.+++.+++++++++++.| +++|++++++|+++||++++.+|.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~-------g~~~~~aiLigiv~g~i~a~~lg~---------- 207 (415)
T TIGR00801 145 KMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGK-------GFLKSISILIGILVGYILALFMGI---------- 207 (415)
T ss_pred HHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 7653 124577777777777777775 468999999999999999999975
Q ss_pred CccccccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 251 TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 251 ~~~~~~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
+|+++ +.++||+++|++++|| |+||++.+..+.++++++++|++||..-
T Consensus 208 ------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a 256 (415)
T TIGR00801 208 ------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITA 256 (415)
T ss_pred ------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 46665 6788999999999998 7999999999999999999999999864
No 7
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=2.9e-38 Score=308.59 Aligned_cols=239 Identities=29% Similarity=0.557 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCccceeeccccchHHHHHHHH
Q 021334 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFVPSTISII 113 (314)
Q Consensus 35 ~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~-~G~rlPiv~G~Sfa~l~~~~~i~ 113 (314)
+|.+++|+||+++|+..++++|+++++++|+ ++|++++++++++++|++|++|++ +|+|+|+++|+|+++++......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 4789999999999999999999999999999 888889999999999999999999 89999999999999999433222
Q ss_pred hhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccccccch--
Q 021334 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCV-- 191 (314)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~~~~-- 191 (314)
.. .+.+++++++++|+.+++|+++++++++|..+|++|+|||.|.|+++++||++|.+.++++.+.++
T Consensus 80 g~----------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~ 149 (389)
T PF00860_consen 80 GM----------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN 149 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---
T ss_pred cc----------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc
Confidence 11 023467899999999999999999999999999999999999999999999999999997665332
Q ss_pred ------------hhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCc
Q 021334 192 ------------EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 259 (314)
Q Consensus 192 ------------~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~ 259 (314)
..+..+++..+.++.++ ++++|++++++|+++||++++.+|. +|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~----------------~~~ 206 (389)
T PF00860_consen 150 PDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGV----------------VDF 206 (389)
T ss_dssp BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHH----------------TTS
T ss_pred ccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhcccc----------------ccc
Confidence 34555555566666665 4569999999999999999999986 455
Q ss_pred cCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 260 AGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 260 s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
++.+.++||+++|+|++|++|+||+.+++.+...+++.+.|++||+.-
T Consensus 207 ~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a 254 (389)
T PF00860_consen 207 SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVA 254 (389)
T ss_dssp SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 532678999999999999999999999999999999999999999864
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=3.8e-37 Score=302.20 Aligned_cols=226 Identities=32% Similarity=0.531 Sum_probs=199.6
Q ss_pred HHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhCCccceeeccccchHHHHHHHHhhc
Q 021334 41 GFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS----LFGTRLPAVMGGSYTFVPSTISIILAG 116 (314)
Q Consensus 41 GlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~----~~G~rlPiv~G~Sfa~l~~~~~i~~~~ 116 (314)
|+||+++|+++++++|++++++.|+|++|+++++|++++++|++|++|+ .+|+|+|+++|+|++++++...+...
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 36899999999999999987766532
Q ss_pred ccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccccc--------
Q 021334 117 RFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-------- 188 (314)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~-------- 188 (314)
+++++++|+.+++|++++++| ++.+|++|+|||.|+|.++++||+++.+.++++..
T Consensus 80 --------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~ 143 (406)
T TIGR03173 80 --------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDF 143 (406)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 468999999999999999999 48899999999999999999999999999886542
Q ss_pred ---cchhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCccCcCCC
Q 021334 189 ---KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA 265 (314)
Q Consensus 189 ---~~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~s~~v~~ 265 (314)
.++.+++.++++++++.++. |+++|++++++++++||++++.+|. +|++. +.+
T Consensus 144 ~~~~~~~l~l~~l~~~il~~~~~-------~~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~ 199 (406)
T TIGR03173 144 GSPQNLGLALLTLVIILLLNRFG-------KGFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAE 199 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh-------hhHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hcc
Confidence 13456777777666666555 4568999999999999999999875 46554 677
Q ss_pred CCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 266 APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 266 apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
+||+++|+|++|++|+||+..++.+...++++++|++|+..-
T Consensus 200 ~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a 241 (406)
T TIGR03173 200 APWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLA 241 (406)
T ss_pred CCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999889999999999999999999999999998754
No 9
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.92 E-value=1.5e-23 Score=203.88 Aligned_cols=217 Identities=14% Similarity=0.200 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhh
Q 021334 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (314)
Q Consensus 36 ~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~ 115 (314)
.++..|+-.+++.|++++++.+..+++.|+|++|+++|+++.++.+|++|++|++ .+|+|++++|| .++.++.+...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~-~~r~Pi~~awS--tPGaAll~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSI-RFKTPVLTAWS--APGAALLVTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCeeeecC--chHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999 68999999999 45665554433
Q ss_pred cccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccccccchhhHH
Q 021334 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (314)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~~~~~i~~ 195 (314)
.+ .+++++.|+++++|++.+++|.+|+++|++|++|+.+.+.++..|.+.+.-..++.....+.++.
T Consensus 99 ~~-------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~ 165 (395)
T TIGR00843 99 PG-------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICF 165 (395)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22 46899999999999999999999999999999999999999998855443333333444554443
Q ss_pred HHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCccCcCCCCCccccCCCC
Q 021334 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (314)
Q Consensus 196 ~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~s~~v~~apwf~~P~p~ 275 (314)
..++..+ .. ||+.|++++++++++|.++++..|.. |.++ + .| +++.|
T Consensus 166 ~mll~~l----~~-------~r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~---~~-~l~~p- 212 (395)
T TIGR00843 166 SMLLCWL----AS-------KAFAPRYAMIAALICGIAFSFALGDM----------------NPTD-L---DF-KIALP- 212 (395)
T ss_pred HHHHHHH----HH-------HHhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-c---cc-ccccc-
Confidence 3222221 12 45678899999999999999998752 3222 1 11 23333
Q ss_pred CcccCcccHHHHHHHH-HHHHHHHhhh
Q 021334 276 QWGAPSFDAGEAFAMM-MASFVALVEV 301 (314)
Q Consensus 276 ~fg~P~F~~~ail~~~-~~~lv~~~Es 301 (314)
.|.+|+||+.+.+... |.++++|...
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~q 239 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQ 239 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999887 8888888543
No 10
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.89 E-value=5.6e-22 Score=190.31 Aligned_cols=212 Identities=21% Similarity=0.287 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhh
Q 021334 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (314)
Q Consensus 36 ~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~ 115 (314)
.++..|+-.+++.+++++++.+..+++.|++++|+++|+.+..+.+|+.|+..++ .+|+|++..||. ++.++.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl-~yR~Pi~~AWSt--PGaAlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSL-RYRMPIVTAWST--PGAALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchhhcch--HHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999999999 899999999994 6666666543
Q ss_pred cccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhcccc---ccccchh
Q 021334 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP---GVAKCVE 192 (314)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~---~~~~~~~ 192 (314)
.+ .+++|+.|+++++|++.+++|.+|+++|+.|++|+.+...++..+ |.+++++ .+..++.
T Consensus 83 ~~-------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGv---Ll~f~l~~f~a~~~~P~ 146 (378)
T PF03594_consen 83 PG-------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGV---LLPFGLAAFTALQADPL 146 (378)
T ss_pred cC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Confidence 32 578999999999999999999999999999999999999999988 6666654 4456666
Q ss_pred hHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCccCcCCCCCccccC
Q 021334 193 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 272 (314)
Q Consensus 193 i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~s~~v~~apwf~~P 272 (314)
+....++..++. ||+.++|+++..+++|.++++..|.. |..+ + ++ .++
T Consensus 147 l~~~ml~~~l~~-----------~r~~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~---~~-~~~ 194 (378)
T PF03594_consen 147 LVGPMLAVFLLA-----------RRFSPRYAVLAALVAGVAVAALTGQL----------------HPSA-L---QL-SLA 194 (378)
T ss_pred HHHHHHHHHHHH-----------HHHcchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c---cc-ccc
Confidence 666555444433 34578899999999999999988652 3222 1 11 444
Q ss_pred CCCCcccCcccHHHHHHHH-HHHHHHHh
Q 021334 273 WPFQWGAPSFDAGEAFAMM-MASFVALV 299 (314)
Q Consensus 273 ~p~~fg~P~F~~~ail~~~-~~~lv~~~ 299 (314)
+| .|.+|+||+++++.+. |+++++|.
T Consensus 195 ~p-~~~~P~Fs~~a~v~lalPL~ivtma 221 (378)
T PF03594_consen 195 HP-VFTTPEFSWSALVSLALPLFIVTMA 221 (378)
T ss_pred ee-EEECCcccHHHHHHHHHHHHHHHHH
Confidence 44 6889999999999998 99999987
No 11
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1.7e-20 Score=177.16 Aligned_cols=213 Identities=22% Similarity=0.335 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhh
Q 021334 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (314)
Q Consensus 36 ~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~ 115 (314)
+++..|++.+++.++++.++.+..+++.|.+++|+++|+.+..+.+|+.|+..++ .+|+|++.+||. ++.++.+.+.
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~-~yR~Pv~~aWST--PG~all~asl 97 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSL-RYRVPVLTAWST--PGAALLVASL 97 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh-hhccceeeeecC--ccHHHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999999 899999999995 5666555543
Q ss_pred cccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccc---cccchh
Q 021334 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG---VAKCVE 192 (314)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~---~~~~~~ 192 (314)
.+ .+++++.|+++++|++.++.|.+|.++|+.|.+||.+...++..| |.+++++. ...++.
T Consensus 98 ~g-------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~~p~ 161 (402)
T COG3135 98 GG-------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPTQPL 161 (402)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCCChH
Confidence 32 468999999999999999999999999999999999999999988 77777754 345666
Q ss_pred hHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCccCcCCCCCccccC
Q 021334 193 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP 272 (314)
Q Consensus 193 i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~s~~v~~apwf~~P 272 (314)
+.+.+++..+++ |.+-++|+|+..+++|..++...|.. +.. ..++-...|
T Consensus 162 l~lpmv~~~ll~-----------r~f~pr~aV~aalvvgv~va~~~G~~----------------~~~---~~~~~~~~p 211 (402)
T COG3135 162 LVLPMVLAYLLA-----------RVFAPRYAVIAALVVGVLVAALLGDL----------------HTA---LVALEISTP 211 (402)
T ss_pred HHHHHHHHHHHH-----------HHcCchHHHHHHHHHHHHHHHHhCcc----------------ccc---ccccccCcc
Confidence 666654444433 23567999999999999999999853 211 122334556
Q ss_pred CCCCcccCcccHHHHHHHH-HHHHHHHhh
Q 021334 273 WPFQWGAPSFDAGEAFAMM-MASFVALVE 300 (314)
Q Consensus 273 ~p~~fg~P~F~~~ail~~~-~~~lv~~~E 300 (314)
+|.+|+||+.+++.+. |+++++|..
T Consensus 212 ---~~v~P~Fs~~A~l~lalPL~lvtmas 237 (402)
T COG3135 212 ---TWVTPEFSFAAMLSLALPLFLVTMAS 237 (402)
T ss_pred ---eeeCCcccHHHHHHHhHHHHHHHHHh
Confidence 6999999999999998 999999864
No 12
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=98.11 E-value=0.0004 Score=68.98 Aligned_cols=187 Identities=12% Similarity=0.212 Sum_probs=123.2
Q ss_pred cccccCCCC-ChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccc
Q 021334 24 ISYCITSPP-PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS 102 (314)
Q Consensus 24 ~~y~~~d~p-p~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~S 102 (314)
..++++|+= -..+-+..|+--.++|.--..+.|-+++++ |.| .....-++.+.++++|++-.+ -.++|+-+++-
T Consensus 8 ~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~---~~av~~AT~l~a~~gs~~mgl-~An~P~alapg 82 (436)
T COG2252 8 RFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMP---VGAVFVATCLAAAIGSIAMGL-YANLPIALAPG 82 (436)
T ss_pred HHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCC---chhHHHHHHHHHHHHHHHHHH-HHcCchhhcch
Confidence 345666654 457778899999999988777888777665 555 455667778889999999887 48899888753
Q ss_pred --cchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccch
Q 021334 103 --YTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY 180 (314)
Q Consensus 103 --fa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~ 180 (314)
.....+..... ..+ ..+|+..|++.++|++.++++++|.=+|++|.+|-..--.+-..||+-+.
T Consensus 83 mglnAfFaftvv~-~~g-------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia 148 (436)
T COG2252 83 MGLNAFFAFTVVL-GMG-------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIA 148 (436)
T ss_pred hhHHHHHHHHHHH-hcC-------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 21122211111 111 25899999999999999999999998999999997774444444444332
Q ss_pred hccccccc----------------c-chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhh
Q 021334 181 EFGFPGVA----------------K-CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTV 240 (314)
Q Consensus 181 ~~~~~~~~----------------~-~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~ 240 (314)
-.++++.+ + ...+++.-+++++.+ .-|+ + .-+++++++...++++.+|.
T Consensus 149 ~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~-------i--~Gaili~i~~~t~~g~~~g~ 214 (436)
T COG2252 149 LIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRK-------I--KGAILIGILVTTILGIILGI 214 (436)
T ss_pred HHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhh-------c--cHhhhHHHHHHHHHHHHhcc
Confidence 22222211 1 223333333333333 2221 1 44899999999999999975
No 13
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=98.06 E-value=0.00031 Score=72.24 Aligned_cols=207 Identities=16% Similarity=0.276 Sum_probs=124.6
Q ss_pred hhchHHHHh--hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchh
Q 021334 51 TTVLIPTSL--VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEK 128 (314)
Q Consensus 51 ~~v~vPlii--a~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~ 128 (314)
+.+++|..+ +.+.|.++ ..-+.++=++.++-+++|.+==.+-|+.-++-.....+.....
T Consensus 32 a~valP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~----------- 93 (554)
T COG0659 32 AAVALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLV----------- 93 (554)
T ss_pred HHHHhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHH-----------
Confidence 345567443 34578988 4667777778888888865544577765444333333332100
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccccc------c-------------
Q 021334 129 FKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA------K------------- 189 (314)
Q Consensus 129 ~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~------~------------- 189 (314)
+++++.+.-+.+.+|++++++|+.++ +++.|++|..|+--.+..||+.++-..+...- +
T Consensus 94 -~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~ 171 (554)
T COG0659 94 -ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVL 171 (554)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhc
Confidence 25788899999999999999999764 99999999999888999998866554332110 0
Q ss_pred ---ch---hhHHHHHHHHHHHHHHhchhhhccccchhhH-HHHHHHHHHHHHHHHhhhcCCCCCCCccCccccccCccCc
Q 021334 190 ---CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRF-AVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGL 262 (314)
Q Consensus 190 ---~~---~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~-svLigi~vG~~va~~~g~~g~~~~~~~~~~~~~~~d~s~~ 262 (314)
|+ .++..++. +..+.+ |+.+++ +-++++++++.+++.++... .+ .+ +.
T Consensus 172 ~~~~~~~~~lg~~~l~----il~~~~-------~~~~~~P~~liaiv~~t~i~~~~~~~~------~~------~G--~i 226 (554)
T COG0659 172 LTINLATLLLGLLTLA----ILLFLP-------RLTPRIPSPLIALVLGTLIVWIFPLDS------LR------YG--EI 226 (554)
T ss_pred ccccHHHHHHHHHHHH----HHHHcc-------chhhhCCcHHHHHHHHHHHHHHhcCCc------hh------cc--cC
Confidence 11 11222221 222232 223344 57999999999999886521 01 11 11
Q ss_pred CCCCCccccCCCCCcccCcccHHHHHHH----HHHHHHHHhhhhhhHH
Q 021334 263 IDAAPWIRVPWPFQWGAPSFDAGEAFAM----MMASFVALVEVCFFSS 306 (314)
Q Consensus 263 v~~apwf~~P~p~~fg~P~F~~~ail~~----~~~~lv~~~Es~G~~~ 306 (314)
..+-|. .+| +|+.|.+++..+..+ ..++++..+||.-+.-
T Consensus 227 ~~~lp~-~~~---~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~ 270 (554)
T COG0659 227 PGSLPS-GLP---HFRLPNVSLSLLLALLPYALALALLGLLESLLTAV 270 (554)
T ss_pred cccCCc-CCC---cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122 456666665544443 3677888889876543
No 14
>PRK11660 putative transporter; Provisional
Probab=97.48 E-value=0.0098 Score=61.42 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH
Q 021334 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (314)
Q Consensus 34 ~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~ 113 (314)
+..-+..|+--.+....-.+++. ...|+++ +.-+..+-+..++-+++|..--++.|++.+.-.....+.
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA----~lag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~ 97 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALA----IASGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVS 97 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHcCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHH
Confidence 44556666654444333222222 2368887 346777788888888887666677887653211111111
Q ss_pred hhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccc
Q 021334 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 179 (314)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL 179 (314)
. +.+.+.+..+.+++|++++++|+++ ++++.+++|..|..-.+..+|+..
T Consensus 98 ~---------------~~~~~~~~~~~~l~Gii~~l~gllr-lG~l~~fip~pVi~Gf~~g~al~I 147 (568)
T PRK11660 98 Q---------------QFGLAGLLVATLMSGIILILMGLAR-LGRLIEYIPLSVTLGFTSGIGIVI 147 (568)
T ss_pred H---------------HhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHhcCcHHHHHHHHHHHHHHH
Confidence 1 1345566677899999999999986 589999999988888888777743
No 15
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=97.25 E-value=0.02 Score=59.05 Aligned_cols=126 Identities=18% Similarity=0.200 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHh--hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHH
Q 021334 35 PEAILLGFQHYIVMLGTTVLIPTSL--VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI 112 (314)
Q Consensus 35 ~~~~~lGlQhvl~m~~~~v~vPlii--a~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i 112 (314)
..-+..|+--.+ +.+|.-+ +...|+++ ..-+..+-+..++-+++|..-=++.|+..+.-.....+
T Consensus 15 ~~Di~aGltv~~------~~iP~~~ayA~laglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~ 81 (563)
T TIGR00815 15 KGDLMAGLTVGI------LLIPQAMAYAILAGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSV 81 (563)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHHHcCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHH
Confidence 344556655433 3445333 33368888 45677888888888888876667777654221111112
Q ss_pred HhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccch
Q 021334 113 ILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY 180 (314)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~ 180 (314)
....+... .+ + ......+.-..+++|++++++|+.++ +++.+++|..|+.-.+..+|+.++
T Consensus 82 v~~~~~~~---~~-~--~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 82 IARVGLQY---LF-D--CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred HHHhcCCC---Cc-c--cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22221110 00 0 12344556778999999999999764 899999999998888888887554
No 16
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=94.57 E-value=0.83 Score=44.89 Aligned_cols=240 Identities=15% Similarity=0.163 Sum_probs=123.6
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHhCCccc
Q 021334 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKA------KVIQTLLFVAGLNTLLQSLFGTRLP 96 (314)
Q Consensus 23 ~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~------~lI~~~l~~sGi~TllQ~~~G~rlP 96 (314)
+.+++.||-.|.. .|.---.+|+++ +....++.+|++++-.. .+|.+.+|+.=+++++.= ...++
T Consensus 54 D~rfE~ED~vPAl----AgtIGkivMvsA---v~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anLA 124 (492)
T PF11840_consen 54 DYRFEWEDLVPAL----AGTIGKIVMVSA---VAAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANLA 124 (492)
T ss_pred ccccchHHhhHHH----HhhhhHHHHHHH---HHHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--ccccc
Confidence 3445566766632 333333455544 22344566788875433 445555444433333332 23344
Q ss_pred eeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhh
Q 021334 97 AVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVG 176 (314)
Q Consensus 97 iv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIG 176 (314)
=-+|+--..+|. +.++ ++.+.+.| +.-|++-+++++++--+|+.++-.--|.|-.+.-+|
T Consensus 125 GthgPmIpLIp~---ivaa---------------GgHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG 184 (492)
T PF11840_consen 125 GTHGPMIPLIPL---IVAA---------------GGHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLG 184 (492)
T ss_pred CCCCCcchhhHH---HHHc---------------CCCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeeh
Confidence 444443222232 2222 12344554 334778888888877788999888888886666555
Q ss_pred ccchhcccc----cccc--chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 021334 177 FGLYEFGFP----GVAK--CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (314)
Q Consensus 177 lsL~~~~~~----~~~~--~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~~~~ 250 (314)
++=...-++ +..+ ...++.+.+.+.+++..|+.++. | |-.+|-++-+++-++|+.+|..=.|..++..
T Consensus 185 ~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~---K---rWLaIPl~~~~a~~~a~~lGa~f~f~t~pgl 258 (492)
T PF11840_consen 185 FVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIE---K---RWLAIPLCSILAGVLAFALGAPFEFTTEPGL 258 (492)
T ss_pred hhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---c---chhhhhHHHHHHHHHHHHcCCCceeecCCCC
Confidence 421111111 1111 23466677777777777886542 2 2347778888888889998862001111100
Q ss_pred CccccccCccCcCCCCCccccCCCCCcccCcc-cHHHHHHHHHHHHH-HHhhhhhhHHH
Q 021334 251 TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSF-DAGEAFAMMMASFV-ALVEVCFFSSF 307 (314)
Q Consensus 251 ~~~~~~~d~s~~v~~apwf~~P~p~~fg~P~F-~~~ail~~~~~~lv-~~~Es~G~~~~ 307 (314)
.++++ .=|..--+=.+.|+|.+ +.-+.++|+++..+ =+-|..||-.|
T Consensus 259 ------p~lnP----~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflghrvF 307 (492)
T PF11840_consen 259 ------PNLNP----MYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGHRVF 307 (492)
T ss_pred ------CCCCC----cccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHHHHH
Confidence 11111 11222212225567876 45667777744332 34567777665
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=93.84 E-value=2.2 Score=45.18 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 021334 76 TLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGL 155 (314)
Q Consensus 76 ~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~ 155 (314)
.-+..+=++.++..++|+-=.+-.|+-. ..++.+...-........+.......+..+.-..+.+|+++.++|+.++
T Consensus 111 yGLYssf~~~~iY~~fGtsr~isiG~~a---v~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrL 187 (665)
T KOG0236|consen 111 YGLYSSFFPPLIYAIFGTSRHVSIGPFA---VVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRL 187 (665)
T ss_pred HHHHHHHHHHHHheeccCCCcccccHHH---HHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555666677767776666666521 1111122100000000000001124566777889999999999998754
Q ss_pred HHHHHhhcCchhHHHHHHHhhccc
Q 021334 156 WRNVTRFLSPLSVVPLISLVGFGL 179 (314)
Q Consensus 156 ~~~l~~~fpP~V~g~vv~lIGlsL 179 (314)
+++.++++..++.-.+...++..
T Consensus 188 -Gfl~~~lS~~~l~GFt~gaa~~I 210 (665)
T KOG0236|consen 188 -GFLVRFLSEPALSGFTTGAALHI 210 (665)
T ss_pred -ChHHHHccHHHHhHhhhhhhhhh
Confidence 89999999777666666555533
No 18
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=84.56 E-value=67 Score=35.10 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=94.8
Q ss_pred HHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCC
Q 021334 42 FQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNY 121 (314)
Q Consensus 42 lQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~ 121 (314)
+--++.++-+++...+-.++.++-. .+-..=++=+++...++.++.+++|..=.++.|++- .+-....+. +.+ |.
T Consensus 363 la~~lfiYfa~l~P~ItFG~ll~~~-Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~Tg-P~lVfe~~l--f~f-~~ 437 (876)
T KOG1172|consen 363 LAATLFIYFACLLPAITFGGLLGEA-TDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTG-PLLVFEKAL--FKF-CK 437 (876)
T ss_pred chHHHHHHHHhhhhHhhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCc-cHHHHHHHH--HHH-Hh
Confidence 3455667766665555554443322 233455567788999999999998665556666552 111111111 111 10
Q ss_pred CCCCchhhhchHHHHHHH---HHHHHHHHHHHHhhhhHHHHH---hhcCchhHHHHHHHhhccchhcccc----------
Q 021334 122 SGDPVEKFKRTMRAIQGS---LIVASTLQIVLGFSGLWRNVT---RFLSPLSVVPLISLVGFGLYEFGFP---------- 185 (314)
Q Consensus 122 ~~~~~~~~~~~l~~v~Ga---~ivagl~~~llg~tg~~~~l~---~~fpP~V~g~vv~lIGlsL~~~~~~---------- 185 (314)
+ .++..+..- -+=++++.+++..+.. ..+. ..|+-+.-|..|++| .+..++.
T Consensus 438 ~--------~~~dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~i---Fi~eai~kl~~i~~~~~ 505 (876)
T KOG1172|consen 438 D--------NGLDYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLI---FIYEAIKKLIKIFKGLP 505 (876)
T ss_pred h--------CCCchhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHhhcCc
Confidence 0 011111111 1223445555555432 2222 234566677777766 4444432
Q ss_pred -c------------------cc----------cchhhHHHHHHHHHHHHHHhchhhh------ccccchhhHHHHHHHHH
Q 021334 186 -G------------------VA----------KCVEIGLPQLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVI 230 (314)
Q Consensus 186 -~------------------~~----------~~~~i~~~~l~~iv~~s~~~~~~~~------~~~~~~~~~svLigi~v 230 (314)
+ .. .+..++++..+..+.++.++|++++ +.|++.+=|++.+.+++
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~ 585 (876)
T KOG1172|consen 506 IEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILV 585 (876)
T ss_pred ccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHH
Confidence 0 00 0112333333445556677776642 22567777899999999
Q ss_pred HHHHHHHhhh
Q 021334 231 VWIYAHLLTV 240 (314)
Q Consensus 231 G~~va~~~g~ 240 (314)
-..+.+..+.
T Consensus 586 ~s~i~~~~~~ 595 (876)
T KOG1172|consen 586 FSLIDYFGGS 595 (876)
T ss_pred HHHHHhhccc
Confidence 9999888763
No 19
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=83.72 E-value=75 Score=35.05 Aligned_cols=39 Identities=15% Similarity=0.421 Sum_probs=27.7
Q ss_pred HHHHHHHhchhhh------ccccchhhHHHHHHHHHHHHHHHHhh
Q 021334 201 IVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLT 239 (314)
Q Consensus 201 iv~~s~~~~~~~~------~~~~~~~~~svLigi~vG~~va~~~g 239 (314)
.+.+..+++++.+ +.|+++.=|++.+++++...+.+.++
T Consensus 571 Tf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~ 615 (900)
T TIGR00834 571 TFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIG 615 (900)
T ss_pred HHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 4445556666532 23567788899999999998888776
No 20
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=77.90 E-value=73 Score=31.72 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCChHHHHHHH-HHHHHHHhhhhchHHH--HhhhcCCCCHHHHHHHHHHHHHHHH
Q 021334 6 APKADEPLPHPAKDQLPSISYCITSPPPWPEAILLG-FQHYIVMLGTTVLIPT--SLVPQMGGGNEEKAKVIQTLLFVAG 82 (314)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~y~~~d~pp~~~~~~lG-lQhvl~m~~~~v~vPl--iia~a~gl~~~~~~~lI~~~l~~sG 82 (314)
.||.++.+-+...+++.+.+++..=+.+..+.+..+ +...+..+......|. .+.+.+|++.++........++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~ 85 (476)
T PLN00028 6 DPKYSKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSI 85 (476)
T ss_pred CCCCcCCCCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 456665544444545555555555444444444333 2222222211112222 3356789999887766555555566
Q ss_pred HHHHHHHH----hCCccceeecc
Q 021334 83 LNTLLQSL----FGTRLPAVMGG 101 (314)
Q Consensus 83 i~TllQ~~----~G~rlPiv~G~ 101 (314)
++.++-.+ +|.|..+..+.
T Consensus 86 ~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 86 FSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred HHHHHHHHHHHHhCChHHHHHHH
Confidence 66666553 68876554443
No 21
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=71.33 E-value=3.3 Score=38.28 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=21.3
Q ss_pred HHHHHhhcCchhHHHHHHHhhccchhcc
Q 021334 156 WRNVTRFLSPLSVVPLISLVGFGLYEFG 183 (314)
Q Consensus 156 ~~~l~~~fpP~V~g~vv~lIGlsL~~~~ 183 (314)
++++.+++|..|+.-.+..+|+.++...
T Consensus 6 lG~l~~~ip~pVi~Gf~~g~ai~I~~~Q 33 (280)
T PF00916_consen 6 LGFLVRFIPRPVISGFLAGIAILIIFSQ 33 (280)
T ss_pred ccHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 4788889998888888888887554443
No 22
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=66.88 E-value=1.4e+02 Score=29.74 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH
Q 021334 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (314)
Q Consensus 34 ~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~ 113 (314)
+...+-.++=.+.+...+-...-+-+.++.|-+.. +...+..+|++|++-+.+|. .++.. +-++.++-..
T Consensus 221 ~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p-----~~~~~~~tGl~sll~ApfGg-~~~nl----aaitaAic~G 290 (395)
T TIGR00843 221 FAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP-----AKPIIAAAGLAALFAAFAGG-ISIGI----AAITAAICMG 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhccCC-chhhh----hHHhHHHhcC
Confidence 33344445444443333333333555666665543 37788899999999998764 22211 1122222111
Q ss_pred hhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhcCchhHHHHHHHhhccchhccc---ccc--
Q 021334 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS-GLWRNVTRFLSPLSVVPLISLVGFGLYEFGF---PGV-- 187 (314)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~t-g~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~---~~~-- 187 (314)
. +.|++ .+.=.++-+.+|++++++|++ +.+..+...+|+..+..+ -|+-|+..=. ...
T Consensus 291 ~------------~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~ 354 (395)
T TIGR00843 291 K------------DAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALH 354 (395)
T ss_pred c------------ccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 1 11222 344567889999999999987 677888999999887643 2433433322 111
Q ss_pred -ccchhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHH
Q 021334 188 -AKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH 236 (314)
Q Consensus 188 -~~~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~ 236 (314)
..+-+-+++|+++.. .+ ..++..-+-..|+++|.+...
T Consensus 355 ~~~~r~~a~~tflvta------Sg-----~~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 355 EDQERDAALIAFLATA------SG-----LHFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred CcchhHHHHHHHHHHH------hc-----CCcccccHHHHHHHHHHHHHH
Confidence 123344555554432 11 234667788999999977654
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=55.72 E-value=2.2e+02 Score=29.31 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccce---ee
Q 021334 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPA---VM 99 (314)
Q Consensus 23 ~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPi---v~ 99 (314)
...| +..+|+....+..++-..+...+.....|+++.+.+|.++.....+.++.-+.+=+++++...+..|+.. +.
T Consensus 210 G~ry-v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~ 288 (524)
T PF05977_consen 210 GLRY-VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVL 288 (524)
T ss_pred HHHH-HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhH
Confidence 3444 3345566555555544444333334557888888899998877777776666666666666655554432 11
Q ss_pred ccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHh
Q 021334 100 GGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLV 175 (314)
Q Consensus 100 G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lI 175 (314)
.++. ..+.+....... .....+..++++.|......-. ..-..+++..|+.+-|=+....
T Consensus 289 ~~~~-~~a~~~~~lal~--------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~ 348 (524)
T PF05977_consen 289 LASL-LFALALLLLALS--------------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIY 348 (524)
T ss_pred HHHH-HHHHHHHHHhcc--------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHH
Confidence 1211 112111111110 1223344556666665554332 2335568888998888776644
No 24
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=48.20 E-value=91 Score=32.45 Aligned_cols=29 Identities=17% Similarity=0.543 Sum_probs=24.7
Q ss_pred hHHHHHhhcCchhHHHHHHHhhccchhcc
Q 021334 155 LWRNVTRFLSPLSVVPLISLVGFGLYEFG 183 (314)
Q Consensus 155 ~~~~l~~~fpP~V~g~vv~lIGlsL~~~~ 183 (314)
+...+..++|-.+.+.+++.+|..++...
T Consensus 338 ~~~~~~~~IP~a~Laavli~v~~~l~~~~ 366 (554)
T COG0659 338 FLAPLVSYIPLAALAAVLILVGWGLLDWS 366 (554)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhccHH
Confidence 35777889999999999999999888753
No 25
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.40 E-value=58 Score=25.81 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=25.3
Q ss_pred HHHhchhhhccccchhhHHHHHHHHHHHHHHHHhh
Q 021334 205 SQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLT 239 (314)
Q Consensus 205 s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g 239 (314)
.+..|+.....+++++..++++|++.|.+.++..+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~ 56 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTG 56 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCC
Confidence 34444433335689999999999999998876654
No 26
>PRK03699 putative transporter; Provisional
Probab=40.70 E-value=1.5e+02 Score=28.33 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=26.7
Q ss_pred hHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 54 ~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
..|..+.+..|+|+++...+.+...++..++.++-..
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 263 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSF 263 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666778999988777776666666777777654
No 27
>PRK11660 putative transporter; Provisional
Probab=37.41 E-value=1.6e+02 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHhhcCchhHHHHHHHhhccchhc
Q 021334 156 WRNVTRFLSPLSVVPLISLVGFGLYEF 182 (314)
Q Consensus 156 ~~~l~~~fpP~V~g~vv~lIGlsL~~~ 182 (314)
+..+.+++|-.+.+.++..+|++++..
T Consensus 370 l~~ll~~iP~~vLa~ili~~~~~m~~~ 396 (568)
T PRK11660 370 LAPLLSYLPLSAMAALLLMVAWNMSEA 396 (568)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhhH
Confidence 456789999999999999999988764
No 28
>COG4129 Predicted membrane protein [Function unknown]
Probab=35.39 E-value=3.9e+02 Score=25.96 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHH
Q 021334 78 LFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR 157 (314)
Q Consensus 78 l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~ 157 (314)
-++.+++.++--++|+..|. ||.+.+.+.+..+ ...+-+.+.+-++|..+.+++-.+++.+.|
T Consensus 17 ~ia~~La~~ia~~l~~~~~~-----~A~i~AV~~l~~t---------~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g--- 79 (332)
T COG4129 17 GLAAGLALLIAHLLGLPQPA-----FAGISAVLCLSPT---------IKRSLKRALQRLLGNALGAILAVLFFLLFG--- 79 (332)
T ss_pred HHHHHHHHHHHHHhCCCchH-----HHHHHHhhcccCc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 35566666664467887764 3333333333211 112334566777777776666555555433
Q ss_pred HHHhhcCchhHHHHHHHh
Q 021334 158 NVTRFLSPLSVVPLISLV 175 (314)
Q Consensus 158 ~l~~~fpP~V~g~vv~lI 175 (314)
..|++.|.+++.+
T Consensus 80 -----~~~~~~~v~~~i~ 92 (332)
T COG4129 80 -----QNPIAFGVVLLII 92 (332)
T ss_pred -----ccHHHHHHHHHHH
Confidence 3466666666544
No 29
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.03 E-value=3.8e+02 Score=23.76 Aligned_cols=85 Identities=15% Similarity=0.327 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhccccccccchhhHHHHHHHHHHHHHHhch--
Q 021334 133 MRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH-- 210 (314)
Q Consensus 133 l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~~~~~~~~i~~~~l~~iv~~s~~~~~-- 210 (314)
.-.+.++.+..|++.++.|++++++.-.+--. |.+ .++- .+++.-+++.....+.++
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~----gi~-tli~----------------~~i~~G~~~~~~~~~i~~~~ 138 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIMGFFSPKNSNQY----GII-TLIL----------------VSIVGGLVFYFIFKYIYPYK 138 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----cHH-HHHH----------------HHHHHHHHHHHHHHHHhccc
Confidence 45678888888888888887666553111111 111 1110 011111112223334332
Q ss_pred hhhccccchhhHHHHHHHHHHHHHHHHh
Q 021334 211 VIKRGKNIFDRFAVIFSVVIVWIYAHLL 238 (314)
Q Consensus 211 ~~~~~~~~~~~~svLigi~vG~~va~~~ 238 (314)
..+++++++|.+.+..+..+-|.+.+..
T Consensus 139 ~~~~r~~~~k~~~~~~~~~~~w~~~~~~ 166 (206)
T PF06570_consen 139 KKKKRPSWWKYILISVLAMVLWIVIFVL 166 (206)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233456888888888888888766554
No 30
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=30.12 E-value=2.6e+02 Score=28.87 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhc
Q 021334 141 IVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEF 182 (314)
Q Consensus 141 ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~ 182 (314)
++++++.++..+ +...+.+++|-.+.+.++..+++.+++.
T Consensus 337 i~~~~~~l~~~l--~~~~~l~~iP~~~la~ili~~~~~l~~~ 376 (563)
T TIGR00815 337 VVTAIVVLLVLL--VLTPLFYYIPQAALAAIIISAVRGLIDY 376 (563)
T ss_pred HHHHHHHHHHHH--HHHHHHHhChHHHHHHHHHHHHhcccCH
Confidence 445544444443 3566789999999999999999987754
No 31
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=27.47 E-value=3.7e+02 Score=26.41 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 021334 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (314)
Q Consensus 74 I~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~t 153 (314)
++..+.+.|+++++=+++| ..|.. ++ ..-...+..+ + -+. .-..+++|++.+++++.
T Consensus 255 ~~~~l~~~Gi~~i~aglfG-~~p~t---~~--~~~~~~~~~t-g---------------~~s-r~~~~~~~~~lil~~l~ 311 (406)
T TIGR03173 255 LAGGLRADGLGSALGGLFN-TFPYT---SF--SQNVGLVQLT-G---------------VKS-RYVVAAAGVILVLLGLF 311 (406)
T ss_pred ccchHHhccHHHHHHHHhC-CCCCc---ch--hhhHHHHHHh-C---------------CCc-hHhHHHHHHHHHHHHHH
Confidence 4677778888888888877 46632 21 1111111111 1 011 11237788888889987
Q ss_pred hhHHHHHhhcCchhHHHHHH
Q 021334 154 GLWRNVTRFLSPLSVVPLIS 173 (314)
Q Consensus 154 g~~~~l~~~fpP~V~g~vv~ 173 (314)
+.+..+.+.+|..|.|.+.+
T Consensus 312 ~~~~~l~~~iP~~vlgg~~l 331 (406)
T TIGR03173 312 PKLAALVASIPQPVLGGAGL 331 (406)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 77888999999888887443
No 32
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=26.58 E-value=3.5e+02 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=23.0
Q ss_pred hHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021334 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (314)
Q Consensus 54 ~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~ 91 (314)
..|..+.+ .|.+.++.........++.-+++++..+.
T Consensus 227 ~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 227 WLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred HHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 79988777666665555556666666553
No 33
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=26.26 E-value=1.8e+02 Score=26.54 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=37.8
Q ss_pred hHHHHHh-hcCchhHHHHHHHhhccchhcccccc--cc---chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHH
Q 021334 155 LWRNVTR-FLSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSV 228 (314)
Q Consensus 155 ~~~~l~~-~fpP~V~g~vv~lIGlsL~~~~~~~~--~~---~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi 228 (314)
+.+|.++ ++.|+.+++++...-+.+...-.++. ++ ++.++-.+..+-+=+.+..+..+ + +..+++.++
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~---~---~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLK---K---NWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHH
Confidence 4566654 67899888877766554444333322 12 23344444444333332222211 1 122566666
Q ss_pred HHHHHHHHHh
Q 021334 229 VIVWIYAHLL 238 (314)
Q Consensus 229 ~vG~~va~~~ 238 (314)
.+|.+++...
T Consensus 85 ~~g~~~~~~~ 94 (215)
T PF04172_consen 85 LVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 34
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=25.25 E-value=4.5e+02 Score=30.55 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=42.3
Q ss_pred HhhcCchhHHHHHHHhhccchhccc--ccc------------------------ccchhhHHHHHHHHHHHHHHhchhhh
Q 021334 160 TRFLSPLSVVPLISLVGFGLYEFGF--PGV------------------------AKCVEIGLPQLVIIVFISQYLPHVIK 213 (314)
Q Consensus 160 ~~~fpP~V~g~vv~lIGlsL~~~~~--~~~------------------------~~~~~i~~~~l~~iv~~s~~~~~~~~ 213 (314)
+.=|...+++.++++||-|+-..-+ +++ .-....++-|++.++.+..|+..
T Consensus 1287 giEfdltfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~SINQTLsRTI~TSlTTLLallaLllFGG~--- 1363 (1403)
T PRK12911 1287 KIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGG--- 1363 (1403)
T ss_pred CeEEcHHHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcch---
Confidence 4457778888889999988766543 111 00123355555555555555532
Q ss_pred ccccchhh--HHHHHHHHHHHHHHHH
Q 021334 214 RGKNIFDR--FAVIFSVVIVWIYAHL 237 (314)
Q Consensus 214 ~~~~~~~~--~svLigi~vG~~va~~ 237 (314)
.++- +++++|+++|+-=+.+
T Consensus 1364 ----sI~~FAlALLIGIIvGTYSSIF 1385 (1403)
T PRK12911 1364 ----SIFNFAFIMTIGILLGTLSSLY 1385 (1403)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5789999999864443
No 35
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=24.54 E-value=9.1e+02 Score=26.08 Aligned_cols=41 Identities=5% Similarity=-0.050 Sum_probs=32.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeecc
Q 021334 61 PQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGG 101 (314)
Q Consensus 61 ~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G~ 101 (314)
..+|++.++...+.+..+++..++.++-.+ +|.|-.++.+.
T Consensus 195 ~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 195 KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 457899998888888888888899888775 68776665554
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=24.32 E-value=4.9e+02 Score=25.20 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=30.6
Q ss_pred chHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccce
Q 021334 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (314)
Q Consensus 53 v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPi 97 (314)
...|.+. +.+|+|+++...+.+...+..+++.++-.. +|.|..+
T Consensus 44 ~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~ 91 (434)
T PRK11663 44 AAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM 91 (434)
T ss_pred HhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence 4455554 458999998888888877777887777655 4665443
No 37
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=23.42 E-value=3.5e+02 Score=20.80 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=12.7
Q ss_pred hHHHHHhhcCchhHHHHHH
Q 021334 155 LWRNVTRFLSPLSVVPLIS 173 (314)
Q Consensus 155 ~~~~l~~~fpP~V~g~vv~ 173 (314)
.+++..++.|+-+.+..+.
T Consensus 31 ~~~~~l~~vp~avl~aLv~ 49 (99)
T PF05437_consen 31 RVRRFLRYVPPAVLAALVV 49 (99)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 4566777788776665555
No 38
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=23.19 E-value=3.4e+02 Score=26.85 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHH
Q 021334 139 SLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLIS 173 (314)
Q Consensus 139 a~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~ 173 (314)
....+|++.+++++.+.+..+.+.+|..|.|.+.+
T Consensus 313 ~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l 347 (415)
T TIGR00801 313 VIVGAAVILIALGFFPKIAALITSIPSPVLGGASI 347 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56788888999998766888889999877776555
No 39
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=22.75 E-value=1e+02 Score=21.27 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=18.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 021334 216 KNIFDRFAVIFSVVIVWIYAHL 237 (314)
Q Consensus 216 ~~~~~~~svLigi~vG~~va~~ 237 (314)
.+-.|.+=++++++.||+++-+
T Consensus 25 ~~q~~ll~vllsIalGylvs~F 46 (48)
T PF06612_consen 25 VRQARLLIVLLSIALGYLVSSF 46 (48)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 4568888999999999998754
No 40
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.21 E-value=96 Score=31.83 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=50.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHH----HHHHHHHHHHHHHHHH----hCC-cccee
Q 021334 28 ITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVI----QTLLFVAGLNTLLQSL----FGT-RLPAV 98 (314)
Q Consensus 28 ~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI----~~~l~~sGi~TllQ~~----~G~-rlPiv 98 (314)
.|+|++|....+.++-..+.+...++..|-.-.-..++|++.+..+. ++.=++.-+..++.++ .++ |.|++
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 34589999999999999998888888877554444565554333322 2222333333333333 232 78888
Q ss_pred eccccchHHHHHH
Q 021334 99 MGGSYTFVPSTIS 111 (314)
Q Consensus 99 ~G~Sfa~l~~~~~ 111 (314)
.|...+.++-.+-
T Consensus 107 ~s~ii~~~g~llY 119 (488)
T KOG2325|consen 107 VSFLIAIIGNLLY 119 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 8876655555443
No 41
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=22.03 E-value=4.6e+02 Score=25.59 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCC
Q 021334 42 FQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNY 121 (314)
Q Consensus 42 lQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~ 121 (314)
+.-.++....++---..+++..|.++++ ..-+...+.+-|++|++=.++|. .|... |.-..-.+... +.+
T Consensus 238 ~~~~lv~~~es~G~~~a~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t~-----~~en~g~i~~t-~v~-- 307 (389)
T PF00860_consen 238 LIFALVAMFESIGTIVAVARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTTT-----YSENAGGIAAT-GVA-- 307 (389)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EEE------HHHHHHHHHH-TB---
T ss_pred HHHHHHHhhhhhhhHHHHHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCcc-----ccccchhhhhh-ccc--
Confidence 3333333333333333444444544433 44568999999999999999887 55422 12221112111 100
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchh-HHHHHHHhhc
Q 021334 122 SGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS-VVPLISLVGF 177 (314)
Q Consensus 122 ~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V-~g~vv~lIGl 177 (314)
+ -=..+.++++.+++++...+..+...+|..| .|+.+.+.|.
T Consensus 308 ----------S----r~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 308 ----------S----RRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred ----------c----ceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 0 1135677788888898877888888999888 5666666654
No 42
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=21.71 E-value=1.9e+02 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHH
Q 021334 30 SPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQT 76 (314)
Q Consensus 30 d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~ 76 (314)
+|.-+...+..++.+.. .+......|....+..|.++++...+...
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 250 (385)
T TIGR00710 205 SKMFWGYALIYGASFGG-FFAFFSGAPFVYIDIMGVSPSVFGLLFAL 250 (385)
T ss_pred CchhHHHHHHHHHHHHH-HHHHHHcChHHHHHHcCCCHHHHHHHHHH
Confidence 34334434444444332 22333345666666788888766554443
No 43
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=21.70 E-value=2e+02 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=23.1
Q ss_pred hHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 54 ~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
..|..+.+..|.++++...+.....+..-++.++..+
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 274 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGW 274 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHH
Confidence 4566666778888877666555555555555655554
No 44
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=20.95 E-value=3e+02 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhhhhc---hHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceee
Q 021334 27 CITSPPPWPEAILLGFQHYIVMLGTTV---LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (314)
Q Consensus 27 ~~~d~pp~~~~~~lGlQhvl~m~~~~v---~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~ 99 (314)
+.+++.+... +-+.+.+..++... ..|..+.+..|.|+.+.....+...+...++..+-.. +|.|-.+..
T Consensus 10 ~~~~~~~~~~---l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (399)
T PRK05122 10 GLRLTLRIVS---IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF 86 (399)
T ss_pred cCcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence 3455555443 34444555554333 3444556778999988887777777777777666554 577766554
Q ss_pred c
Q 021334 100 G 100 (314)
Q Consensus 100 G 100 (314)
+
T Consensus 87 ~ 87 (399)
T PRK05122 87 G 87 (399)
T ss_pred H
Confidence 4
No 45
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=20.84 E-value=4.5e+02 Score=28.82 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHHHHHhhccchhcccc
Q 021334 139 SLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP 185 (314)
Q Consensus 139 a~ivagl~~~llg~tg~~~~l~~~fpP~V~g~vv~lIGlsL~~~~~~ 185 (314)
.+++.|.+.+++++ +-.++++.+ |+-..++.++.|+-+.|.+.+
T Consensus 14 ~~~~lG~~lll~~l--~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~ 57 (810)
T TIGR00844 14 AYSCVGIFSSIFSL--VSLFVKEKL-YIGESMVASIFGLIVGPHCLN 57 (810)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhc-CCcHHHHHHHHHHHhhhhhhc
Confidence 34555666666664 223344232 233344445556666666554
No 46
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=20.82 E-value=4.5e+02 Score=27.13 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHH
Q 021334 70 KAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIV 149 (314)
Q Consensus 70 ~~~lI~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~l 149 (314)
..+.+++.+..=|+++++-.++|.+- |++. +.--+- +.+..+ .+.=+. +=++|.+.++
T Consensus 303 P~~~inRgi~~eGig~lL~gl~G~gt----G~Tt-~~ENig-ll~vTK------------VgSRrv----vQ~aa~fmI~ 360 (510)
T KOG1292|consen 303 PPSVLNRGIGWEGIGSLLAGLFGTGT----GSTT-SVENIG-LLGVTK------------VGSRRV----VQIAAGFMIF 360 (510)
T ss_pred ChhhhhhhhhhhhHHHHHHHhhCCCc----ccee-ecccee-eEeeee------------eeeeee----hhhhHHHHHH
Confidence 35778899999999999998876532 2221 000000 000000 001112 2357788899
Q ss_pred HHhhhhHHHHHhhcCchhHHHHHH-------HhhccchhccccccccchhhHHHHHHHHHHHHHHhchhh---hccccch
Q 021334 150 LGFSGLWRNVTRFLSPLSVVPLIS-------LVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVI---KRGKNIF 219 (314)
Q Consensus 150 lg~tg~~~~l~~~fpP~V~g~vv~-------lIGlsL~~~~~~~~~~~~~i~~~~l~~iv~~s~~~~~~~---~~~~~~~ 219 (314)
+|..|-++-+..-+|-.++|.+.+ ..|+|..++.=.+...|..+-...+..-+.+-+|+++.. +.+.+++
T Consensus 361 ~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~~v~Tg~~~~ 440 (510)
T KOG1292|consen 361 FGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPGPVHTGNGWF 440 (510)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCCccccCcHHH
Confidence 998888888888889666655443 334444444322233344443333333333445665432 1111122
Q ss_pred -hhHHHH--HHHHHHHHHHHHhhhc
Q 021334 220 -DRFAVI--FSVVIVWIYAHLLTVG 241 (314)
Q Consensus 220 -~~~svL--igi~vG~~va~~~g~~ 241 (314)
..+-++ .-+.+|-++|++++.+
T Consensus 441 d~ilnvll~~~m~Vggi~A~~LDnt 465 (510)
T KOG1292|consen 441 DDILNVLLSSRMLVGGILAFILDNT 465 (510)
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccc
Confidence 223344 4578899999999764
No 47
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=20.64 E-value=5.9e+02 Score=23.52 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=32.9
Q ss_pred cCchhHHHHHHHhhccchhcccccc--cc---chhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHH
Q 021334 163 LSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHL 237 (314)
Q Consensus 163 fpP~V~g~vv~lIGlsL~~~~~~~~--~~---~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~ 237 (314)
+.|+++++++...-+.+...-.+.. ++ ++.++-.+..+.+=+.+..+.+ |+ ...++++|+.+|.+++..
T Consensus 36 lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~l----k~--~~~~Il~~~~vG~~~~i~ 109 (232)
T PRK04288 36 FTPLFVAMVLGIAFLKLTGISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVL----KK--YWWQILGGIVVGSVCSVL 109 (232)
T ss_pred hhHHHHHHHHHHHHHHHhCCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH----HH--HHHHHHHHHHHHHHHHHH
Confidence 7788888777655443332222211 22 3345555554444343322221 11 122667777776665543
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=20.45 E-value=8e+02 Score=23.86 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=32.1
Q ss_pred chHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 021334 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (314)
Q Consensus 53 v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G 100 (314)
...|.+. +. |+++++.....+...+...++.++-.. +|.|..+..+
T Consensus 50 ~~~p~l~-~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~ 99 (452)
T PRK11273 50 LAMPYLV-EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 99 (452)
T ss_pred HhhHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence 3456654 44 999998888888888878887777654 6777655444
No 49
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=20.02 E-value=6.7e+02 Score=22.84 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=25.0
Q ss_pred hHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccce
Q 021334 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (314)
Q Consensus 54 ~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPi 97 (314)
..|....+..|.++++...+.....+...++..+-.. +|.|...
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3566666667888877666555544444444444333 4555443
Done!