Query 021334
Match_columns 314
No_of_seqs 157 out of 1067
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 4.8E-40 1.6E-44 323.4 20.8 231 23-307 3-248 (429)
2 1pw4_A Glycerol-3-phosphate tr 38.0 2.2E+02 0.0075 25.4 13.0 41 50-90 270-310 (451)
3 3o7q_A L-fucose-proton symport 33.4 1.8E+02 0.0062 26.0 9.1 67 31-97 257-328 (438)
4 3qe7_A Uracil permease; uracil 21.0 3.9E+02 0.013 25.3 9.1 76 74-172 263-338 (429)
5 3o7q_A L-fucose-proton symport 15.5 5.8E+02 0.02 22.4 12.1 102 55-171 49-154 (438)
6 2kv5_A FST, putative uncharact 13.9 66 0.0023 19.7 1.1 15 161-175 7-21 (33)
7 1pw4_A Glycerol-3-phosphate tr 11.4 5.8E+02 0.02 22.5 7.3 64 35-100 28-98 (451)
8 2l8t_A Transposon TN557 toxic 8.1 2.4E+02 0.0081 19.4 2.4 19 59-77 12-30 (71)
9 4aps_A DI-OR tripeptide H+ sym 7.6 1.1E+03 0.039 20.9 10.2 48 54-101 35-92 (491)
10 1ejp_A Syndecan-4; symmetric-p 6.6 2.7E+02 0.0093 16.2 1.8 16 18-33 2-17 (28)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=4.8e-40 Score=323.42 Aligned_cols=231 Identities=20% Similarity=0.361 Sum_probs=203.3
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHhhhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeecc
Q 021334 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMGG 101 (314)
Q Consensus 23 ~~~y~~~d~pp~~~~~~lGlQhvl~m~~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~~-G~rlPiv~G~ 101 (314)
+..|++|||||+.+.+.+|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G~ 71 (429)
T 3qe7_A 3 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLGS 71 (429)
T ss_dssp -CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEEE
T ss_pred CcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEecC
Confidence 5679999999999999999999999999999999987 8887 48999999999999985 8999999999
Q ss_pred ccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh--hh-HHHHHhhcCchhHHHHHHHhhcc
Q 021334 102 SYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GL-WRNVTRFLSPLSVVPLISLVGFG 178 (314)
Q Consensus 102 Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~t--g~-~~~l~~~fpP~V~g~vv~lIGls 178 (314)
||+|++++.++.. +++++++|+.+++|++++++|++ +. .+|++|+|||+|+|+++++||++
T Consensus 72 sfafi~~~~~i~~----------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 72 SFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp CGGGHHHHHHHGG----------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 9999999887753 25899999999999999999985 22 15899999999999999999999
Q ss_pred chhccccccc-----------cchhhHHHHHHHHHHHHHHhchhhhccccchhhHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 021334 179 LYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDA 247 (314)
Q Consensus 179 L~~~~~~~~~-----------~~~~i~~~~l~~iv~~s~~~~~~~~~~~~~~~~~svLigi~vG~~va~~~g~~g~~~~~ 247 (314)
+++.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++|+.+|.
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~------- 201 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI------- 201 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC-------
Confidence 9999876543 256788888888888887764 568999999999999999999986
Q ss_pred CccCccccccCccCcCCCCCccccCCCCCcccCcccHHHHHHHHHHHHHHHhhhhhhHHH
Q 021334 248 APKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVEVCFFSSF 307 (314)
Q Consensus 248 ~~~~~~~~~~d~s~~v~~apwf~~P~p~~fg~P~F~~~ail~~~~~~lv~~~Es~G~~~~ 307 (314)
+|+++ +.++||+++|+ |+.|+||+++++.++++++++++|++||..-
T Consensus 202 ---------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~a 248 (429)
T 3qe7_A 202 ---------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVV 248 (429)
T ss_dssp ---------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ---------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46664 67789999996 5779999999999999999999999999853
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=38.00 E-value=2.2e+02 Score=25.43 Aligned_cols=41 Identities=17% Similarity=-0.008 Sum_probs=26.8
Q ss_pred hhhchHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 50 GTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 50 ~~~v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
+.....|..+.+..|.++.+...+.....++.-++.++-..
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777778999988776666655555566655544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=33.36 E-value=1.8e+02 Score=25.95 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=36.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhhchHHHH-hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccce
Q 021334 31 PPPWPEAILLGFQHYIVMLGTTVLIPTS-LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (314)
Q Consensus 31 ~pp~~~~~~lGlQhvl~m~~~~v~vPli-ia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPi 97 (314)
+|.+.......+-......+.....|.. +.+..|.++++...+.....++..++.++-.+ +|.|..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3444443333333333333333345555 66677999988777766666666666666544 4555443
No 4
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=21.03 E-value=3.9e+02 Score=25.27 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 021334 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (314)
Q Consensus 74 I~~~l~~sGi~TllQ~~~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~v~Ga~ivagl~~~llg~t 153 (314)
++..+.+-|++|++=.++|. .|.- ++ .--.-.+..+ +.. . +. ....+|++.+++|+.
T Consensus 263 ~~r~l~adGla~i~~glfGg-~p~T---t~--~en~g~i~~t-g~~-----------s--r~---~~~~ag~~lillgl~ 319 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFGS-TPNT---TY--GENIGVMAIT-RVY-----------S--TW---VIGGAAIFAILLSCV 319 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CCEE---EC--HHHHHHHHHH-TBC-----------C--HH---HHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHHhcCC-CCcc---hH--HHhHHHHHhc-CCc-----------c--hH---HHHHHHHHHHHHHHH
Confidence 46788999999999998874 6643 22 1211112111 110 0 22 346888888999987
Q ss_pred hhHHHHHhhcCchhHHHHH
Q 021334 154 GLWRNVTRFLSPLSVVPLI 172 (314)
Q Consensus 154 g~~~~l~~~fpP~V~g~vv 172 (314)
+.+..+...+|..|.|.+.
T Consensus 320 pk~~al~~~IP~~vlgg~~ 338 (429)
T 3qe7_A 320 GKLAAAIQMIPLPVMGGVS 338 (429)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHH
Confidence 7788899999988877643
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=15.54 E-value=5.8e+02 Score=22.44 Aligned_cols=102 Identities=10% Similarity=-0.072 Sum_probs=56.2
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeccccchHHHHHHHHhhcccCCCCCCCchhhh
Q 021334 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFK 130 (314)
Q Consensus 55 vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G~Sfa~l~~~~~i~~~~~~~~~~~~~~~~~~ 130 (314)
.|. +.+.+|+++++...+.+...+...++.++-.. +|.|..++.+.....++......... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------------~ 114 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------------I 114 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------------c
Confidence 344 45678999999888888877877887777654 67777766665433333322210010 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCchhHHHH
Q 021334 131 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 171 (314)
Q Consensus 131 ~~l~~v~Ga~ivagl~~~llg~tg~~~~l~~~fpP~V~g~v 171 (314)
..+.....+.++.|+..-..-. .....+.+++|+.--+..
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFR 154 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHH
Confidence 1233444444445544332221 123456677777665543
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=13.87 E-value=66 Score=19.68 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=8.6
Q ss_pred hhcCchhHHHHHHHh
Q 021334 161 RFLSPLSVVPLISLV 175 (314)
Q Consensus 161 ~~fpP~V~g~vv~lI 175 (314)
.++-|+++|.++.++
T Consensus 7 ~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=11.36 E-value=5.8e+02 Score=22.50 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhh---chHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 021334 35 PEAILLGFQHYIVMLGTT---VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (314)
Q Consensus 35 ~~~~~lGlQhvl~m~~~~---v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G 100 (314)
.......+.+.+..+... ...|.+ .+.. .++++...+.+...+...++.++-.. +|.|-.+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 334444455554444322 223433 3446 88888777777777777777776654 5666544444
No 8
>2l8t_A Transposon TN557 toxic shock syndrome toxin-1; scaffold, bacteriophage, SAPI, structural protein; NMR {Staphylococcus aureus}
Probab=8.12 E-value=2.4e+02 Score=19.41 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.7
Q ss_pred hhhcCCCCHHHHHHHHHHH
Q 021334 59 LVPQMGGGNEEKAKVIQTL 77 (314)
Q Consensus 59 ia~a~gl~~~~~~~lI~~~ 77 (314)
++.++|+..+++..+|.+.
T Consensus 12 vanafglneedtnllinav 30 (71)
T 2l8t_A 12 VANAFGLNEEDTNLLINAV 30 (71)
T ss_dssp HHHTTCCCSHHHHHHHHHH
T ss_pred HHHhhcCCcchhhhhHhhh
Confidence 4678999999998888764
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=7.62 E-value=1.1e+03 Score=20.94 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.5
Q ss_pred hHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hCCccceeecc
Q 021334 54 LIPTSLVPQ-----MGGGNEEKAKVIQTLLFVAGLNTLLQSL-----FGTRLPAVMGG 101 (314)
Q Consensus 54 ~vPliia~a-----~gl~~~~~~~lI~~~l~~sGi~TllQ~~-----~G~rlPiv~G~ 101 (314)
..|..+.+. .|.|+++...+.+...+...++.++-.. +|.|-.+..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344444555 8999999988888888888888887764 35555554443
No 10
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=6.61 E-value=2.7e+02 Score=16.22 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=10.6
Q ss_pred CCCCCCcccccCCCCC
Q 021334 18 KDQLPSISYCITSPPP 33 (314)
Q Consensus 18 ~~~~~~~~y~~~d~pp 33 (314)
++++.+--|.+||+|.
T Consensus 2 mrKKDEGSY~Lde~p~ 17 (28)
T 1ejp_A 2 MKKKDEGSYDLGKKPI 17 (28)
T ss_dssp CSCCCCCCCCCCSCCC
T ss_pred cccccccccccCCCcc
Confidence 3456666788888653
Done!