Query 021334
Match_columns 314
No_of_seqs 157 out of 1067
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 16:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021334.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021334hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 30.5 1.3E+02 0.0097 24.4 13.9 38 53-90 270-307 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 17.1 1.7E+02 0.012 23.7 7.6 46 53-100 46-95 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 8.8 2.6E+02 0.019 21.6 5.9 45 56-100 31-79 (417)
4 d1oyia_ a.4.5.19 (A:) dsRNA-bi 6.8 34 0.0025 21.5 -0.7 14 21-34 44-57 (62)
5 d2prra1 a.152.1.3 (A:5-194) Un 4.0 5.3E+02 0.039 18.6 4.9 29 62-90 146-174 (190)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 3.9 3.4E+02 0.025 14.4 2.6 14 223-236 13-26 (32)
7 d2ouwa1 a.152.1.4 (A:1-134) Hy 2.8 7.7E+02 0.056 16.6 4.9 35 56-90 90-124 (134)
8 d2craa1 a.4.1.1 (A:7-64) Homeo 2.7 4.2E+02 0.03 16.0 2.3 19 58-76 33-51 (58)
9 d1le8a_ a.4.1.1 (A:) Mating ty 2.6 4.3E+02 0.031 15.4 2.2 18 58-75 29-46 (53)
10 d2e1oa1 a.4.1.1 (A:8-64) Homeo 2.5 4.5E+02 0.033 15.6 2.3 18 58-75 32-49 (57)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.46 E-value=1.3e+02 Score=24.41 Aligned_cols=38 Identities=16% Similarity=-0.050 Sum_probs=28.6
Q ss_pred chHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 53 v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
...|..+.+..+.+.++.........+..-+++++..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 270 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 34566777788999988888777777777777777665
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.14 E-value=1.7e+02 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=32.6
Q ss_pred chHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 021334 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (314)
Q Consensus 53 v~vPliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G 100 (314)
++.|.+ +..|+|++|.....+...+..+++.++-.. +|.|.-+..+
T Consensus 46 ~~~p~~--~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 46 LAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHT--TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHH--HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 445644 347999999988888888888888887664 5666554444
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.81 E-value=2.6e+02 Score=21.58 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=33.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 021334 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (314)
Q Consensus 56 Pliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~----~G~rlPiv~G 100 (314)
|.-+.+..|+|+.|...+.+...+...++..+-.. +|.|-.++.+
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~ 79 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 44456778999999888888877888887777664 6888665544
No 4
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=6.76 E-value=34 Score=21.48 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.3
Q ss_pred CCCcccccCCCCCh
Q 021334 21 LPSISYCITSPPPW 34 (314)
Q Consensus 21 ~~~~~y~~~d~pp~ 34 (314)
.+.++|.-||.||-
T Consensus 44 rsamvy~s~d~ppr 57 (62)
T d1oyia_ 44 RSAMVYSSDDIPPR 57 (62)
T ss_dssp HHTSSEECSSSSCE
T ss_pred HhhheecCCCCCCc
Confidence 46789999999883
No 5
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=4.02 E-value=5.3e+02 Score=18.63 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 62 QMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 62 a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
..|++++|...++..+-+.+.+..+..++
T Consensus 146 ~~g~s~~eivel~~~va~~~~~nr~~~~l 174 (190)
T d2prra1 146 EHGFTDEDAWDIAAITAFFGLSNRMANTI 174 (190)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999988888888888876
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.88 E-value=3.4e+02 Score=14.37 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 021334 223 AVIFSVVIVWIYAH 236 (314)
Q Consensus 223 svLigi~vG~~va~ 236 (314)
+...|+.+|.++|.
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 55667777776654
No 7
>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.85 E-value=7.7e+02 Score=16.62 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 021334 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (314)
Q Consensus 56 Pliia~a~gl~~~~~~~lI~~~l~~sGi~TllQ~~ 90 (314)
-...+...|.+++++...++..-+..+..++....
T Consensus 90 H~~~a~~~G~s~e~I~e~~a~~~~~~~~~~l~~~~ 124 (134)
T d2ouwa1 90 HTAAARAKGMTPAQHAEVLAIIGLAAQTNALVTAM 124 (134)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 34556668999999988888877777777766553
No 8
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.65 E-value=4.2e+02 Score=15.95 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=14.6
Q ss_pred HhhhcCCCCHHHHHHHHHH
Q 021334 58 SLVPQMGGGNEEKAKVIQT 76 (314)
Q Consensus 58 iia~a~gl~~~~~~~lI~~ 76 (314)
-+|..+|+++.+...|.|.
T Consensus 33 ~LA~~l~l~~~qV~vWFqN 51 (58)
T d2craa1 33 KISAATSLSERQITIWFQN 51 (58)
T ss_dssp HHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHeeecccc
Confidence 4567789999988888763
No 9
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.56 E-value=4.3e+02 Score=15.44 Aligned_cols=18 Identities=6% Similarity=-0.116 Sum_probs=13.5
Q ss_pred HhhhcCCCCHHHHHHHHH
Q 021334 58 SLVPQMGGGNEEKAKVIQ 75 (314)
Q Consensus 58 iia~a~gl~~~~~~~lI~ 75 (314)
.++..+|+++.+...|.+
T Consensus 29 ~LA~~lgl~~~qV~~WFq 46 (53)
T d1le8a_ 29 EVAKKCGITPLQVRVWFI 46 (53)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 356668999988887765
No 10
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=4.5e+02 Score=15.57 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=13.5
Q ss_pred HhhhcCCCCHHHHHHHHH
Q 021334 58 SLVPQMGGGNEEKAKVIQ 75 (314)
Q Consensus 58 iia~a~gl~~~~~~~lI~ 75 (314)
.+|..+|+++.+...|.+
T Consensus 32 ~LA~~l~L~~~qV~~WFq 49 (57)
T d2e1oa1 32 RLAKMLQLSERQVKTWFQ 49 (57)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCCCHHHhhHhhh
Confidence 456678999988777765
Done!