Query 021335
Match_columns 314
No_of_seqs 138 out of 1266
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.9E-43 4.1E-48 326.5 21.3 261 1-298 183-449 (449)
2 KOG1303 Amino acid transporter 100.0 2.3E-40 5.1E-45 310.3 22.3 271 1-301 166-437 (437)
3 PTZ00206 amino acid transporte 100.0 3E-40 6.5E-45 316.4 18.9 271 2-299 187-465 (467)
4 PLN03074 auxin influx permease 100.0 1.9E-38 4.1E-43 303.2 22.9 274 1-312 174-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 8.2E-37 1.8E-41 288.8 -1.4 275 2-295 129-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.3E-31 2.7E-36 250.2 21.5 272 2-301 133-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.9E-31 4.1E-36 234.7 0.5 282 1-307 242-523 (524)
8 COG0814 SdaC Amino acid permea 99.7 2.8E-15 6.1E-20 141.8 21.1 262 2-293 133-410 (415)
9 TIGR00837 araaP aromatic amino 99.1 3.8E-09 8.2E-14 99.3 18.2 169 73-266 179-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.7 1.8E-06 3.9E-11 81.5 20.5 171 70-267 182-366 (394)
11 PRK10483 tryptophan permease; 98.7 3.6E-06 7.8E-11 79.3 20.2 168 73-266 193-373 (414)
12 PRK09664 tryptophan permease T 98.5 2.2E-05 4.7E-10 74.1 20.5 169 73-266 194-374 (415)
13 PRK15132 tyrosine transporter 98.5 5.3E-06 1.2E-10 78.2 15.7 169 74-267 183-363 (403)
14 TIGR03813 put_Glu_GABA_T putat 98.0 0.0011 2.4E-08 64.2 21.1 49 80-131 202-250 (474)
15 PRK10655 potE putrescine trans 97.9 0.0026 5.7E-08 60.9 21.4 55 73-130 190-244 (438)
16 PRK13629 threonine/serine tran 97.9 0.00035 7.6E-09 66.2 14.6 200 73-286 210-434 (443)
17 PRK11021 putative transporter; 97.9 0.0049 1.1E-07 58.5 22.6 56 71-129 176-231 (410)
18 TIGR00814 stp serine transport 97.9 0.0001 2.2E-09 69.6 10.4 180 72-264 186-377 (397)
19 PRK10746 putative transport pr 97.8 0.0063 1.4E-07 58.8 22.6 55 72-129 200-254 (461)
20 TIGR03810 arg_ornith_anti argi 97.8 0.0049 1.1E-07 59.6 21.9 58 73-134 196-253 (468)
21 PRK10249 phenylalanine transpo 97.8 0.0057 1.2E-07 59.1 21.9 54 73-129 210-263 (458)
22 PRK15049 L-asparagine permease 97.8 0.0039 8.4E-08 60.9 20.9 56 72-130 220-275 (499)
23 PRK10435 cadB lysine/cadaverin 97.8 0.005 1.1E-07 59.0 20.7 58 71-131 186-243 (435)
24 PRK10644 arginine:agmatin anti 97.8 0.0059 1.3E-07 58.7 21.1 54 73-129 192-245 (445)
25 PRK10197 gamma-aminobutyrate t 97.7 0.0055 1.2E-07 58.9 20.3 55 72-129 181-235 (446)
26 TIGR00906 2A0303 cationic amin 97.7 0.0061 1.3E-07 60.3 20.8 55 72-129 231-285 (557)
27 TIGR00913 2A0310 amino acid pe 97.7 0.014 3.1E-07 56.5 22.7 55 71-128 196-250 (478)
28 PRK11357 frlA putative fructos 97.7 0.0078 1.7E-07 57.8 20.3 55 72-129 195-249 (445)
29 PRK10238 aromatic amino acid t 97.7 0.0074 1.6E-07 58.2 20.0 51 73-126 201-251 (456)
30 PF13520 AA_permease_2: Amino 97.6 0.0048 1E-07 58.7 18.1 59 74-137 190-248 (426)
31 TIGR00911 2A0308 L-type amino 97.6 0.0068 1.5E-07 59.2 19.3 57 71-130 234-290 (501)
32 TIGR00909 2A0306 amino acid tr 97.6 0.035 7.6E-07 52.9 23.1 57 72-131 195-251 (429)
33 PRK11387 S-methylmethionine tr 97.6 0.018 4E-07 55.7 21.3 56 72-130 206-261 (471)
34 PRK10580 proY putative proline 97.5 0.037 8.1E-07 53.3 22.8 53 73-128 200-252 (457)
35 TIGR01773 GABAperm gamma-amino 97.5 0.026 5.7E-07 54.3 21.1 56 73-131 202-257 (452)
36 TIGR00905 2A0302 transporter, 97.5 0.035 7.5E-07 53.8 21.7 56 72-131 199-254 (473)
37 PRK11049 D-alanine/D-serine/gl 97.5 0.033 7.2E-07 53.9 21.5 56 73-131 212-267 (469)
38 TIGR00908 2A0305 ethanolamine 97.5 0.023 4.9E-07 54.5 20.0 54 72-128 191-244 (442)
39 TIGR00910 2A0307_GadC glutamat 97.5 0.038 8.1E-07 54.1 21.8 50 75-127 197-246 (507)
40 PRK15238 inner membrane transp 97.5 0.034 7.3E-07 54.2 21.5 54 72-128 211-264 (496)
41 PRK10836 lysine transporter; P 97.4 0.068 1.5E-06 52.0 22.2 55 73-130 206-260 (489)
42 TIGR00907 2A0304 amino acid pe 97.3 0.04 8.7E-07 53.5 20.0 52 72-126 217-268 (482)
43 COG0531 PotE Amino acid transp 96.9 0.16 3.4E-06 48.7 19.8 61 73-136 202-262 (466)
44 TIGR00930 2a30 K-Cl cotranspor 96.8 0.34 7.4E-06 51.0 22.3 53 74-129 282-334 (953)
45 KOG1287 Amino acid transporter 96.7 0.12 2.5E-06 49.7 16.2 237 5-267 139-387 (479)
46 COG1113 AnsP Gamma-aminobutyra 96.1 0.21 4.6E-06 47.4 14.3 179 70-265 201-388 (462)
47 TIGR03428 ureacarb_perm permea 96.0 1.6 3.5E-05 42.3 23.2 54 73-129 214-267 (475)
48 PF00324 AA_permease: Amino ac 95.6 0.042 9.1E-07 53.3 7.8 64 71-137 199-262 (478)
49 KOG1289 Amino acid transporter 95.5 1.2 2.6E-05 43.3 16.8 66 70-138 250-315 (550)
50 TIGR00912 2A0309 spore germina 93.2 5.1 0.00011 37.1 15.6 56 79-138 186-241 (359)
51 KOG1286 Amino acid transporter 92.5 4.4 9.6E-05 40.1 14.4 178 71-265 231-422 (554)
52 COG0833 LysP Amino acid transp 90.3 20 0.00042 35.2 16.3 53 71-126 233-285 (541)
53 PRK11375 allantoin permease; P 87.2 31 0.00066 33.7 16.8 48 87-138 243-294 (484)
54 COG0814 SdaC Amino acid permea 82.3 12 0.00027 35.6 10.0 51 215-265 324-375 (415)
55 TIGR02358 thia_cytX probable h 80.3 53 0.0011 30.9 18.0 44 89-136 190-233 (386)
56 TIGR00800 ncs1 NCS1 nucleoside 80.1 57 0.0012 31.2 16.3 64 71-138 206-274 (442)
57 COG0591 PutP Na+/proline sympo 79.0 67 0.0015 31.4 18.0 62 76-137 239-300 (493)
58 KOG4812 Golgi-associated prote 74.6 6.8 0.00015 34.0 5.0 78 221-302 161-254 (262)
59 PF03845 Spore_permease: Spore 64.5 29 0.00063 31.5 7.5 63 71-137 174-236 (320)
60 TIGR00796 livcs branched-chain 64.2 1.3E+02 0.0028 28.4 17.5 34 224-263 314-347 (378)
61 PRK04949 putative sulfate tran 63.1 79 0.0017 28.0 9.6 50 92-147 15-64 (251)
62 PF00474 SSF: Sodium:solute sy 58.4 67 0.0015 30.2 9.0 30 3-32 126-155 (406)
63 KOG2082 K+/Cl- cotransporter K 55.6 1.8E+02 0.004 30.1 11.3 97 73-173 411-521 (1075)
64 PHA02680 ORF090 IMV phosphoryl 49.8 46 0.001 24.1 4.6 63 73-140 12-74 (91)
65 PRK13183 psbN photosystem II r 45.0 27 0.00058 22.1 2.5 31 108-138 4-34 (46)
66 PRK12768 CysZ-like protein; Re 43.0 2E+02 0.0042 25.3 8.7 29 94-127 8-36 (240)
67 PRK11017 codB cytosine permeas 39.1 3.4E+02 0.0074 25.6 12.1 46 87-136 199-244 (404)
68 TIGR00327 secE_euk_arch protei 39.0 51 0.0011 22.3 3.4 35 93-133 15-49 (61)
69 PRK09400 secE preprotein trans 38.8 51 0.0011 22.3 3.4 34 93-132 19-52 (61)
70 CHL00020 psbN photosystem II p 36.7 32 0.00068 21.4 1.9 26 112-137 5-30 (43)
71 PHA03048 IMV membrane protein; 34.4 83 0.0018 22.9 4.0 62 74-141 13-74 (93)
72 TIGR00813 sss transporter, SSS 34.2 4E+02 0.0086 25.0 15.9 29 3-31 122-150 (407)
73 PF02468 PsbN: Photosystem II 33.8 39 0.00085 21.1 2.0 26 113-138 6-31 (43)
74 cd08765 Cyt_b561_CYBRD1 Verteb 33.8 2.4E+02 0.0052 22.9 7.2 68 106-177 44-111 (153)
75 PRK11026 ftsX cell division AB 32.8 2.6E+02 0.0057 25.4 8.2 26 277-302 281-306 (309)
76 PF05805 L6_membrane: L6 membr 32.0 1.5E+02 0.0033 25.1 5.9 73 238-310 45-134 (195)
77 COG1914 MntH Mn2+ and Fe2+ tra 30.5 4.9E+02 0.011 24.9 19.1 54 213-266 325-378 (416)
78 PRK09442 panF sodium/panthothe 29.9 5.2E+02 0.011 25.0 19.2 28 3-30 164-191 (483)
79 COG3476 Tryptophan-rich sensor 29.6 1.2E+02 0.0027 24.8 4.8 50 84-139 23-73 (161)
80 PTZ00478 Sec superfamily; Prov 27.4 95 0.0021 22.3 3.4 35 92-132 31-65 (81)
81 cd08766 Cyt_b561_ACYB-1_like P 26.5 3E+02 0.0065 22.0 6.6 68 106-177 37-104 (144)
82 PF01102 Glycophorin_A: Glycop 25.5 1.3E+02 0.0028 23.5 4.1 25 278-302 67-91 (122)
83 PLN02351 cytochromes b561 fami 24.5 2.5E+02 0.0054 24.7 6.1 73 95-176 73-145 (242)
84 PF03134 TB2_DP1_HVA22: TB2/DP 24.3 2.8E+02 0.006 20.0 6.5 27 241-267 2-28 (94)
85 PF05884 ZYG-11_interact: Inte 23.3 5.1E+02 0.011 23.6 7.9 40 228-269 122-162 (299)
86 PF03073 TspO_MBR: TspO/MBR fa 23.2 1.4E+02 0.003 23.8 4.2 49 84-137 15-63 (148)
87 TIGR00439 ftsX putative protei 23.1 5E+02 0.011 23.6 8.2 27 276-302 280-306 (309)
88 PF02417 Chromate_transp: Chro 22.1 1.2E+02 0.0026 24.8 3.6 43 77-119 9-54 (169)
89 COG2443 Sss1 Preprotein transl 21.7 1.5E+02 0.0032 20.3 3.3 34 94-133 21-54 (65)
90 cd08764 Cyt_b561_CG1275_like N 21.2 3.1E+02 0.0068 23.6 6.0 69 106-176 54-122 (214)
91 PLN02810 carbon-monoxide oxyge 21.2 4.1E+02 0.0088 23.2 6.7 67 106-176 76-142 (231)
92 PRK12488 acetate permease; Pro 20.5 8.4E+02 0.018 24.1 22.2 30 2-31 185-214 (549)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=326.47 Aligned_cols=261 Identities=20% Similarity=0.304 Sum_probs=226.5
Q ss_pred CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335 1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD 80 (314)
Q Consensus 1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 80 (314)
|++..++.+|++++||+|+|+++|++|++.++ +.++++.++.+++.+...+.+. ..+..+...++|+
T Consensus 183 i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~----~g~~ii~~y~~~~~~~~~~~~~---------~~~~~~~~lf~Gt 249 (449)
T KOG1304|consen 183 ILIQLPPLLLLNLIRNLKILSPFSLFANVFIL----VGLAIIMYYLVQDLPPTSDLPA---------VTGWSGLPLFFGT 249 (449)
T ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhccCCcccccc---------ccchhhhHHHHHH
Confidence 35567888999999999999999999999887 5777777888776542222221 2234477789999
Q ss_pred HHHhccCcchhHhHHhhhccCCccchhhh---hHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHH
Q 021335 81 VAFAYAFSTVLVEIQDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDF 157 (314)
Q Consensus 81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~---~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~ 157 (314)
.+|||+|+++++|++++||+| ++|. +++..+|.+++++|+.+|++||++|||++++.|+.|+|+ +|+.+.
T Consensus 250 aifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~---~~l~~~ 322 (449)
T KOG1304|consen 250 AIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ---EILSQT 322 (449)
T ss_pred HHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc---cHHHHH
Confidence 999999999999999999999 8999 999999999999999999999999999999999999995 589999
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchH
Q 021335 158 ANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN 237 (314)
Q Consensus 158 ~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~ 237 (314)
+++++++.+..+||++++|..+.+|+++.++..++ ++++....+|..+++++..+|..+|+++
T Consensus 323 Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~ 385 (449)
T KOG1304|consen 323 VKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLA 385 (449)
T ss_pred HHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence 99999999999999999999999999876543211 1247788899999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhCCCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021335 238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRR---FSFTWVWLKILIWSCFIVSLVALVGSVQGL 298 (314)
Q Consensus 238 ~vlslvGs~~~~~l~filP~l~~l~~~~~~~---~~~~~~~~~~i~~~g~~~~v~gt~~si~~i 298 (314)
.++||+||++++.+.+++|+++|++.++++. ..++++.+..++++|++.++.|||.|+.++
T Consensus 386 ~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 386 LFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999986544 245666777899999999999999999864
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=310.28 Aligned_cols=271 Identities=40% Similarity=0.681 Sum_probs=234.0
Q ss_pred CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335 1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD 80 (314)
Q Consensus 1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 80 (314)
|++++++.+|++|+||++.++++|..|+++++.|..+.++.++..+.+....+...+.. .+.+. .++++|+
T Consensus 166 ~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~~~---~f~a~g~ 236 (437)
T KOG1303|consen 166 IIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTIPT---VFTALGI 236 (437)
T ss_pred hhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCCcc---hhhhhhh
Confidence 57899999999999999999999999999999988888888777665543222111110 00111 1899999
Q ss_pred HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHH
Q 021335 81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANA 160 (314)
Q Consensus 81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~ 160 (314)
+.|+|+||.++||||++||+| ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++ +|.|+...+++
T Consensus 237 iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani 310 (437)
T KOG1303|consen 237 IAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANI 310 (437)
T ss_pred eeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHH
Confidence 999999999999999999999 679999999999999999999999999999999999999996 35789999999
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHH
Q 021335 161 CIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240 (314)
Q Consensus 161 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vl 240 (314)
++.+|++.+|+++.+|+.+.+|++...++++ + . ++..++|.+.|+.+++.+.++|+.+|+|++++
T Consensus 311 ~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~-~------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~ 375 (437)
T KOG1303|consen 311 LIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F-K------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLL 375 (437)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c-c------------ccccceeeehhhHHHHHHHHHHHhccccHhHH
Confidence 9999999999999999999999987643221 0 0 02347899999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 021335 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQS 301 (314)
Q Consensus 241 slvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~ii~~ 301 (314)
+++||+...++++++|+++|++.+|+++...+|++++.+ .++|+++++....++++.++.+
T Consensus 376 ~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 376 SLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999888888899988888 7999999999999999888753
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3e-40 Score=316.45 Aligned_cols=271 Identities=15% Similarity=0.227 Sum_probs=208.7
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhh-cCCCCccccccccccccCCc----hhhHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVI-GDGPHATTLTGTTVGVDVSA----SEKVWRAFQ 76 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (314)
+++.++++||+++|++++|+++|.+|+++++.. ++.++++.. ++.+. ..++.+.+.+... .+...+++.
T Consensus 187 ~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~----vi~ivi~~~~~~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~ 260 (467)
T PTZ00206 187 LMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYL----VIVIVVHSCMNGLPE--NIKNVSVGKDDNAEIILFNSGNRAIE 260 (467)
T ss_pred ehhhhHhhhcccccchHHHHHHHHHHHHHHHHH----HhhhhhhhhcccCcc--cccccccCCCCCCceEEecCchHHHh
Confidence 456788999999999999999999999876532 222222222 22111 1111111110000 111236789
Q ss_pred HHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHH
Q 021335 77 AIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVD 156 (314)
Q Consensus 77 ~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~ 156 (314)
++|+++|||.||.+.+|+|+|||+| +.+||.++...++.+++++|..+|++||++||++++++++.|+++.+ +....
T Consensus 261 algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-~~~~~ 337 (467)
T PTZ00206 261 GLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-EPAIM 337 (467)
T ss_pred hhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-Cchhh
Confidence 9999999999999999999999997 45889999999999999999999999999999999999999994322 34567
Q ss_pred HHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccch
Q 021335 157 FANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFF 236 (314)
Q Consensus 157 ~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~ 236 (314)
++++++.+.++.+||++.+|+|+.+++.+.. +.+ +.+ .+++...+..+++++.++|+.+|++
T Consensus 338 v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi~vP~l 399 (467)
T PTZ00206 338 VGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGLFIPKI 399 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHhccCCH
Confidence 8889999999999999999999999887532 111 111 2556566777777889999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHh---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021335 237 NDFVGLIGAASFWPLTVYFPVEMYIART---KIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 299 (314)
Q Consensus 237 ~~vlslvGs~~~~~l~filP~l~~l~~~---~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii 299 (314)
+.+++|+||++++.++|++|+++|++.. +++.+.++|+.++.++++|++.+++|||+|+++.+
T Consensus 400 ~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 400 NTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999999999853 23334445666788999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.9e-38 Score=303.22 Aligned_cols=274 Identities=18% Similarity=0.173 Sum_probs=213.7
Q ss_pred CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335 1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD 80 (314)
Q Consensus 1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 80 (314)
+++++++.+|++++|++|+++++|.+|..+++.+...+++..+.+. ++ ++++. ....+....+.++++
T Consensus 174 ~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~--~~------~~~~~----~~~~~~~~~f~~~~~ 241 (473)
T PLN03074 174 TYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG--QV------EGVKH----SGPTKLVLYFTGATN 241 (473)
T ss_pred EeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CC------CCCCC----CCchhHHHHHHHHHH
Confidence 3678899999999999999999999998876543222222222211 11 11111 011245567788899
Q ss_pred HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCC--cccccccCcCCchhHHHHH
Q 021335 81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP--GNFLTGFGFYEPFWLVDFA 158 (314)
Q Consensus 81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~--~~il~~l~~~~~~~~~~~~ 158 (314)
++|+|+||.++|||++|||+| ++|+++...+...++..|+.+|+.||++|||+++ ++.+.|+|.+ . ...++
T Consensus 242 i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~--~-~~~~~ 314 (473)
T PLN03074 242 ILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS--G-WRDAA 314 (473)
T ss_pred HHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--h-HHHHH
Confidence 999999999999999999999 8899999999999999999999999999999975 4567778842 2 36889
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHH
Q 021335 159 NACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 238 (314)
Q Consensus 159 ~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~ 238 (314)
++++.++++.+|+++++|+.+..|+..... + . +....|+.+|+.+++.++++|+.+|+|++
T Consensus 315 ~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~----~-------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~ 375 (473)
T PLN03074 315 VILMLIHQFITFGFACTPLYFVWEKAIGVH--D----T-------------KSICLRALARLPVVVPIWFLAIIFPFFGP 375 (473)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c----c-------------ccHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 999999999999999999999888764321 1 0 12367889999999999999999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhCCC-------------cchhhH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 021335 239 FVGLIGAASFWPLTVYFPVEMYIARTKIR-------------RFSFTW--VWLKILIWS-CFIVSLVALVGSVQGLIQSL 302 (314)
Q Consensus 239 vlslvGs~~~~~l~filP~l~~l~~~~~~-------------~~~~~~--~~~~~i~~~-g~~~~v~gt~~si~~ii~~~ 302 (314)
++||+||++++.++|++|+++|++.++++ .+.++| +.+..++++ |++..+.|+|+|+.++++++
T Consensus 376 llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 376 INSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhh
Confidence 99999999999999999999999876432 112222 445566654 55556899999999999999
Q ss_pred cccccccccc
Q 021335 303 KTYKPFQAVQ 312 (314)
Q Consensus 303 ~~~~~f~~~~ 312 (314)
++++.|++|+
T Consensus 456 ~~~~~f~~~~ 465 (473)
T PLN03074 456 DTFGLFAKCY 465 (473)
T ss_pred hhhhhhhhhc
Confidence 9977666553
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=8.2e-37 Score=288.80 Aligned_cols=275 Identities=27% Similarity=0.377 Sum_probs=211.3
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV 81 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 81 (314)
++++++++|++++|++++|+++|.+|+++.+.+ +...++........+ .++.+.. +.....+.++.+.++|++
T Consensus 129 ~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~i~ 201 (409)
T PF01490_consen 129 IIFALIVLPLSFLKNLKSLRYLSILGLFSIFYF----IVIVVIYIISYGPGE--PSGVPSP-PVWPFISFSGFFSAFGII 201 (409)
T ss_pred cccccccccccccchhhHHHHHhhhhhhcccee----eeeecceeeeeeccc--ccccccc-cccccchhhHHHHhhhhh
Confidence 567889999999999999999999999877631 111111111111100 0011000 011234567899999999
Q ss_pred HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHH
Q 021335 82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANAC 161 (314)
Q Consensus 82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~ 161 (314)
+|||.||.+++|+++|||+|++. +|++++...++.+++++|..+|..||++||+++++++++|+|++ ++...+++++
T Consensus 202 ~faf~~~~~~~~i~~~m~~~~~~-~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~--~~~~~i~~~~ 278 (409)
T PF01490_consen 202 IFAFSCHPNLPPIQSEMKDPSKF-KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND--DVLIIIARIL 278 (409)
T ss_pred hhhhhcccccceeeeeccCCccc-cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc--cccccccccc
Confidence 99999999999999999998311 35669999999999999999999999999999999999999964 3678999999
Q ss_pred HHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHHH
Q 021335 162 IAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVG 241 (314)
Q Consensus 162 ~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vls 241 (314)
+.++++.+||++.+|.++.+|+.+.++...++ +. .. .+...+++|..+|+.++++++++|..+|+++++++
T Consensus 279 ~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~--~~-~~------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~ 349 (409)
T PF01490_consen 279 LVISLLLSYPLQLFPARNSLENLLFKRAASSR--DS-PK------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIIS 349 (409)
T ss_pred chhhhhhccccccchhHhhhhhheeccccccc--cc-cc------cccccceeeeeeecchhhhhhhhhhhccchhhhhc
Confidence 99999999999999999999998754200000 00 00 01123478899999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 021335 242 LIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV-----WLKILIWSCFIVSLVALVGSV 295 (314)
Q Consensus 242 lvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~-----~~~~i~~~g~~~~v~gt~~si 295 (314)
++||++++.++|++|+++|++.++++++..+|+ ..+.++++|++.++.|+|+++
T Consensus 350 l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 350 LVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999987665433332 235567889999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=250.19 Aligned_cols=272 Identities=19% Similarity=0.258 Sum_probs=216.5
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV 81 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 81 (314)
++...+..||++.|++.+|++.|.++.++++. .+.+++++.+..+... ++.++ +.......++.+.+++++
T Consensus 133 l~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~----fv~~vv~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~pi~ 203 (411)
T KOG1305|consen 133 LVLLFIILPLSLLKNLDSLKYTSALSLASVVY----FVVLVVYKYFQGPCAL---GRLSY--LVPNLSSFSSLFYALPIF 203 (411)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHhccccc---CCccc--ccCCcchhhhhhhhhhhh
Confidence 45678899999999999999999999998873 3334444444432101 11111 011122236889999999
Q ss_pred HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchh----HHHH
Q 021335 82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW----LVDF 157 (314)
Q Consensus 82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~----~~~~ 157 (314)
+|||.||.|+.|+++|||+| +++++.++...+...++++|..+|.+||+.|||++.+|++.++|.+.... ....
T Consensus 204 ~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~ 281 (411)
T KOG1305|consen 204 VFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLC 281 (411)
T ss_pred heeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999998744321 3578
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchH
Q 021335 158 ANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN 237 (314)
Q Consensus 158 ~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~ 237 (314)
++..+.++.+.++|+..+|+|..+++.+....++ ++ +....++..++..++..+.+.|+.+|+++
T Consensus 282 vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~----~~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~ 346 (411)
T KOG1305|consen 282 VRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG----LT-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIG 346 (411)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC----CC-----------CccceehhHHHHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999988776432221 10 11124566788899999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021335 238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS 301 (314)
Q Consensus 238 ~vlslvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~ 301 (314)
++++++||++++.++|++|+++|++.+|+ +.++....+...++|+...+.|+..-+.++..+
T Consensus 347 ~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 347 TIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999886 333444566777888889999999888887664
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-31 Score=234.65 Aligned_cols=282 Identities=15% Similarity=0.203 Sum_probs=223.2
Q ss_pred CchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHH
Q 021335 1 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGD 80 (314)
Q Consensus 1 ~li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 80 (314)
|++.+..++|-+++|+||-.+.+|++.+++-+...++++ .|...... +...+.+.+ ..+..+.+.++|+
T Consensus 242 m~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v---~YCLs~~~--dW~wskv~F------sidi~~fPisvG~ 310 (524)
T KOG4303|consen 242 MMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMV---LYCLSFVS--DWSWSKVTF------SIDINTFPISVGM 310 (524)
T ss_pred hhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--hccceeEEE------EEEcccCceEEEE
Confidence 678889999999999999999999999998874333322 23222221 122333333 2234456688999
Q ss_pred HHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHH
Q 021335 81 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANA 160 (314)
Q Consensus 81 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~ 160 (314)
++|+|..|..+|+.+..|++| .+|+..+.++-+...++-..+|..||++||+.+++.|++|+|.. ....++++
T Consensus 311 iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q---sfk~~VN~ 383 (524)
T KOG4303|consen 311 IVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ---SFKILVNL 383 (524)
T ss_pred EEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc---chhhhhhH
Confidence 999999999999999999999 78999999999999999999999999999999999999999952 25778999
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHhccchHHHH
Q 021335 161 CIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFV 240 (314)
Q Consensus 161 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vl 240 (314)
.+++..+.|||+-...+.+.+|+.+.+-.|+..|..- ++ +..+.+.+.+..|..+++.+.+.|+.+|+|..+|
T Consensus 384 fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc-ys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LM 456 (524)
T KOG4303|consen 384 FLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC-YS------PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELM 456 (524)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee-eC------CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999997777778788765443333222110 00 0011123445689999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021335 241 GLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP 307 (314)
Q Consensus 241 slvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~~~~~~~ 307 (314)
+|+|+++++.++|+.|++||+++.++.....+......+++.|...++.|.|.|..++++.+....+
T Consensus 457 Gl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 457 GLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 9999999999999999999999998765555555677788899999999999999999999876544
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.69 E-value=2.8e-15 Score=141.76 Aligned_cols=262 Identities=15% Similarity=0.153 Sum_probs=170.3
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV 81 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 81 (314)
+++..++.++++.++...++..|.++..+... .+..+.+....-+ ...+...+ ............++|++
T Consensus 133 lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~----~~~l~~~~~~~~~--~~~l~~~~----~~~~~~~~~~~~~ipv~ 202 (415)
T COG0814 133 LIFALVLAFLSWLGTLAVLKITSLLVFGKVIY----LVLLVVYLIPHWN--PANLFALP----SASQSFWKYLLLAIPVF 202 (415)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH----HHHHHHHHhcccC--HHHHhccc----ccchhhHHHHHHHhhHH
Confidence 46788888999999999999999999887652 2222222221111 11111110 00012334677999999
Q ss_pred HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHH
Q 021335 82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANAC 161 (314)
Q Consensus 82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~ 161 (314)
.|+|+||++++++++|||+++ +++.+|+...+..+..++|..++.++|..+|+.+.++++++.++++ . ....+..
T Consensus 203 vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~--~-~l~~~~~ 277 (415)
T COG0814 203 VFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI--S-LLSALAG 277 (415)
T ss_pred HhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH--H-HHHHHHH
Confidence 999999999999999999883 3349999999999999999999999999999999999999998532 1 1222222
Q ss_pred HHHHHHHhhhhcccchH--------------HHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhh--hhHHHHHHH
Q 021335 162 IAVHLIGAYQVFCQPIF--------------GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL--VWRTAYVIV 225 (314)
Q Consensus 162 ~~i~~~~sypl~~~p~~--------------~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~v~~ 225 (314)
.......+++.+..|.+ |..++...+ .++ + + +++..+.+. ......++.
T Consensus 278 ~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~----~------~---~r~~~~~~~~~~~~i~~l~~ 342 (415)
T COG0814 278 VINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNS----K------P---GRKKTGLLTFLPPLIFALLY 342 (415)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccC----c------c---cchhhhhhhHHHHHHHHHHH
Confidence 22233344444433433 333333221 010 0 0 011122222 234455566
Q ss_pred HHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 021335 226 SAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVG 293 (314)
Q Consensus 226 ~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~ 293 (314)
....+...|..+.+++.+|+.....+.++.|...+.+....+....++.....++++|+..++.-.++
T Consensus 343 ~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~ 410 (415)
T COG0814 343 PWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA 410 (415)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999999888776543322222234555666776666555444
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.13 E-value=3.8e-09 Score=99.27 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCc----------cc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG----------NF 142 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~----------~i 142 (314)
+.+.+++...++|++|.+++++.++++++ +||.+|+...+..+++++|+++........+.+.-. ..
T Consensus 179 ~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l 255 (381)
T TIGR00837 179 YILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGL 255 (381)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHH
Confidence 56788899999999999999999999865 278999999999999999998765544444333211 11
Q ss_pred ccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335 143 LTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA 221 (314)
Q Consensus 143 l~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 221 (314)
.+.+.. .+..+...++.....+.++.|+.-.....+|...+.+++ .+ ++ .+|.....+
T Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~--~~----~~---------------~~~~~~~~~ 314 (381)
T TIGR00837 256 VNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKF--DD----SK---------------KGRFKTGLL 314 (381)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Cc----cc---------------CCCchhhhh
Confidence 111110 012345667777888888999987766777776655432 11 00 113344556
Q ss_pred HHHHHHHHHHhccchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335 222 YVIVSAVLAMIFPFFN-DFVGLIGAASFWPLTVYFPVEMYIARTKI 266 (314)
Q Consensus 222 ~v~~~~~iA~~iP~~~-~vlslvGs~~~~~l~filP~l~~l~~~~~ 266 (314)
..+...++|.+.|+.. ..++..| +.++.+.+++|++++++.||+
T Consensus 315 ~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 315 TFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 6677889999999876 9999999 888999999999999998864
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.74 E-value=1.8e-06 Score=81.48 Aligned_cols=171 Identities=17% Similarity=0.282 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh--hhhhh---------hccCCCC
Q 021335 70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC--GVMGY---------LAFGNDA 138 (314)
Q Consensus 70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~--g~~gY---------~~fG~~v 138 (314)
+....+.++++..++|+.|.++|++.+.+++. +||.+|++..+..+..++|++. .+.|- ..-|+++
T Consensus 182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~ 258 (394)
T PF03222_consen 182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV 258 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence 33466799999999999999999999999854 3789999999988888888764 34441 1222222
Q ss_pred Cc--ccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhh
Q 021335 139 PG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL 216 (314)
Q Consensus 139 ~~--~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (314)
.+ ..+.+.. +..+...++.+.-.+.+.+||-=.....+|.+++.++. +++ ...|.
T Consensus 259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~ 315 (394)
T PF03222_consen 259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRL 315 (394)
T ss_pred HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchH
Confidence 11 1222222 22456677788888899999965555667777766532 111 01233
Q ss_pred hhHHHHHHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335 217 VWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR 267 (314)
Q Consensus 217 ~~r~~~v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~ 267 (314)
....+..+...++|...| .|...+++.| ...+.+..++|+++.+|.|+++
T Consensus 316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 334455566788899888 5788999999 8999999999999999998643
No 11
>PRK10483 tryptophan permease; Provisional
Probab=98.68 E-value=3.6e-06 Score=79.33 Aligned_cols=168 Identities=11% Similarity=0.118 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHh--hhhhhhhc---------cCCCCCcc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGYLA---------FGNDAPGN 141 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~gY~~---------fG~~v~~~ 141 (314)
..+.+++++.++|+.|.++|++.+.+++. .||.+|++..+..+..++|++ ..+.|-.. -|+++ +.
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~ 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence 46689999999999999999999998753 368999999999999999987 23333221 23332 11
Q ss_pred cccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHH
Q 021335 142 FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRT 220 (314)
Q Consensus 142 il~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 220 (314)
.++.+.. .+..+...+......+.+.+||-=.....+|.+++.++. +++ ...|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeeh
Confidence 1122221 112355566777778888999865555677777766542 111 012222334
Q ss_pred HHHHHHHHHHHhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335 221 AYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 266 (314)
Q Consensus 221 ~~v~~~~~iA~~iP~-~~~vlslvGs~~~~~l~filP~l~~l~~~~~ 266 (314)
+..+...++|...|+ |-..++..|.. +..+.-++|+++-++.||+
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 677788999999996 78899999976 6788889999999999975
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.52 E-value=2.2e-05 Score=74.06 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHh--hhhhhh---------hccCCCCCcc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGY---------LAFGNDAPGN 141 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~gY---------~~fG~~v~~~ 141 (314)
..+.+++++.++|+.|.++|++.+.+++. .+|.+|.+..+..+..++|++ ..+.|- ..-|+++++.
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 46689999999999999999999998754 367888888888888888865 233331 2233343331
Q ss_pred cccccCcCCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335 142 FLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA 221 (314)
Q Consensus 142 il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 221 (314)
+..-....+..+...+..+...+.+.+||-=.....+|.+...++. +++ ...|...-.+
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehh
Confidence 1111111123466777888888889999965555677777765532 111 0123233346
Q ss_pred HHHHHHHHHHhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335 222 YVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 266 (314)
Q Consensus 222 ~v~~~~~iA~~iP~-~~~vlslvGs~~~~~l~filP~l~~l~~~~~ 266 (314)
..+...++|...|+ |-..++..|.. .+.+.-++|+++-+|.||+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 67788999999996 88899999996 6688889999999999975
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.48 E-value=5.3e-06 Score=78.23 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC-----CC-----cccc
Q 021335 74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----AP-----GNFL 143 (314)
Q Consensus 74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~-----v~-----~~il 143 (314)
.+.+++++.++|+.|.++|++.+.+++. .+|.+|++..+..+..++|+..=......-+.+ .+ ++++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 6789999999999999999999999754 378999999999999888886422222221211 11 1233
Q ss_pred cccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHH
Q 021335 144 TGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY 222 (314)
Q Consensus 144 ~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 222 (314)
+.+.. .+..+...++.....+.+.+||-=.....+|.+.+.++. +++ ...|.....+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~~-------------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RNT-------------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Ccc-------------------ccCCchhehhh
Confidence 33321 112456677777778888888865554667777665432 110 01244445677
Q ss_pred HHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335 223 VIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR 267 (314)
Q Consensus 223 v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~ 267 (314)
.+...++|+..| -|...+++.|. ..+.+.+++|+++-+|.++++
T Consensus 319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 788899999998 56778888886 578999999999999998643
No 14
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.03 E-value=0.0011 Score=64.24 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.8
Q ss_pred HHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 80 DVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 80 i~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
.+.|+|.|-......-+|+|||+ |+.+|++..+..++.++|.+....-.
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 250 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIA 250 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999994 68999999999999999987655433
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=97.92 E-value=0.0026 Score=60.87 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 130 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g 130 (314)
+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|++.....
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999999994 6899999999999999999865543
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.91 E-value=0.00035 Score=66.23 Aligned_cols=200 Identities=10% Similarity=0.058 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccC-C----cc--chhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSS-P----PE--NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PG 140 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p-~----~~--~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v-----~~ 140 (314)
..+.++++..++|+.|+++++....+|+. . ++ .+|.+|++..+..+..++|+..-...-..-+++. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46789999999999999999999885433 1 12 5788999999988888888775433333322221 12
Q ss_pred --ccccc----cCcC-Cc-----hhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCc
Q 021335 141 --NFLTG----FGFY-EP-----FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGV 208 (314)
Q Consensus 141 --~il~~----l~~~-~~-----~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (314)
+++.. ++.. +. .+...+..+...+.+..||-=.....+|.++....+...+. .++ +.
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~~~----~~----- 358 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKG--DKT----KV----- 358 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc----cc-----
Confidence 21222 2210 00 23455566666678888886555578888887763200010 000 01
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC-CcchhhHHHHHHHHHHHHHH
Q 021335 209 YHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKI-RRFSFTWVWLKILIWSCFIV 286 (314)
Q Consensus 209 ~~~~~~~~~~r~~~v~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~-~~~~~~~~~~~~i~~~g~~~ 286 (314)
+.+..+.....++.+.+.+.|+.=|++-.++.-+|+--...+.|++|...-.|.-.- +.+. +..++.+.+.|++.
T Consensus 359 -~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~--~~~n~fv~~~Gl~~ 434 (443)
T PRK13629 359 -SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG--RLDNVFVTVIGLLT 434 (443)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC--CchhHHHHHHHHHH
Confidence 112344455666777788888888999999997777778899999999887766421 1221 11355556666544
No 17
>PRK11021 putative transporter; Provisional
Probab=97.90 E-value=0.0049 Score=58.53 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
..+...++....|+|.|-......-+|+|||+ |+.+|.+..+..++.++|.+....
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999994 689999999999999999987654
No 18
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.87 E-value=0.0001 Score=69.59 Aligned_cols=180 Identities=9% Similarity=0.078 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhh----ccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Ccc-
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTL----KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGN- 141 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m----~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v-----~~~- 141 (314)
.+...+++...+||.+|.++++...+. ++|+.+.+|.+|+...+..+..++|+..-...-...+.+. +++
T Consensus 186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni 265 (397)
T TIGR00814 186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI 265 (397)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence 467799999999999999999997444 3232235788999999999888888775444333333332 122
Q ss_pred -cccccCc-CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhH
Q 021335 142 -FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWR 219 (314)
Q Consensus 142 -il~~l~~-~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 219 (314)
.+..+.+ .+..+...+....-.+.+..|+--....++|.+++.+.+..+.+ ++ +. +++..+....
T Consensus 266 s~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~---~~----~~------~~~~~~~~~~ 332 (397)
T TIGR00814 266 SILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK---GK----KI------NIRKLNRAIA 332 (397)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc---cc----cc------CHHHHHHHHH
Confidence 1221111 11224455555666677888886655578888888763211110 00 01 1123344455
Q ss_pred HHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 021335 220 TAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIART 264 (314)
Q Consensus 220 ~~~v~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~ 264 (314)
.++.+.+...|+.=|++-++++-+|+--...+.|++|...-.|.-
T Consensus 333 ~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 333 IFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 566677888888889999999977777778999999998877654
No 19
>PRK10746 putative transport protein YifK; Provisional
Probab=97.85 E-value=0.0063 Score=58.80 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
.+...++....|+|.|--.+...-+|+|||+ |+.+|+...+......+|......
T Consensus 200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 200 KGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566889999999999999999999999994 689999988888888888875443
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.84 E-value=0.0049 Score=59.62 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhcc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF 134 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~f 134 (314)
+...++....|+|.|-.....+-+|.|++ |+.+|.+..+...+.++|.++....+...
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45578888999999999888888888875 78999999999999999999877655443
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=97.82 E-value=0.0057 Score=59.05 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
+...++....|+|.|-......-+|+|||+ |+.+|++..+......+|......
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999994 689999999998899999875443
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=97.82 E-value=0.0039 Score=60.87 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 130 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g 130 (314)
.+.+.++...+|+|.|-......-+|+|||+ |+.+|++..++....++|+......
T Consensus 220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~ 275 (499)
T PRK15049 220 LPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLL 275 (499)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667789999999999999999999994 5799999988888888888765543
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.79 E-value=0.005 Score=59.01 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
..+...++....|+|.|-......-+|+|||+ |+.+|+...+...+.++|++......
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777889999999999999999999999994 68999999999999999998776544
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.78 E-value=0.0059 Score=58.66 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|.++...
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999994 689999999999999999987665
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.74 E-value=0.0055 Score=58.92 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|++....
T Consensus 181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 181 GAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999999999993 679999998999899999886554
No 26
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.73 E-value=0.0061 Score=60.33 Aligned_cols=55 Identities=7% Similarity=0.141 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
.+.+.+.....|+|.|-..+...-+|+|||+ |+.+|.+..++.+++++|.++...
T Consensus 231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 231 TGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999994 679999999999999999987654
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.71 E-value=0.014 Score=56.53 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 128 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 128 (314)
..+...++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|++...
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888889999999999999999999994 68999999999999999998654
No 28
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.68 E-value=0.0078 Score=57.77 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
.+...++....|+|.|-......-+|+|||+ |+.+|++..++.++.++|.+....
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999999994 689999999999999999886654
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.67 E-value=0.0074 Score=58.21 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC 126 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~ 126 (314)
+...+++...|+|.|--.....-+|+|||+ |+.+|++..+.....+.|+..
T Consensus 201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 555778889999999999999999999994 579999887777777777654
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.64 E-value=0.0048 Score=58.67 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
.+.+++...|+|.|-......-+|+|| |+.+|.+..+..++.++|.+....-....+++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence 568889999999999999999999774 58999999999999999999866655555443
No 31
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.63 E-value=0.0068 Score=59.17 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 130 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g 130 (314)
..+...++....|+|.|-.....+-+|+|||+ |+.+|++..+..++.++|++....-
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788999999999999999999999994 6899999999999999999985543
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=97.58 E-value=0.035 Score=52.92 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
.+...++....++|.|.......-+|+|||+ |+.+|.+..+..++.++|++......
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 195 GGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888899999999999999999999993 67899999999999999998765443
No 33
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.57 E-value=0.018 Score=55.73 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 130 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g 130 (314)
.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|+......
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999994 6899999999998899998876543
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.54 E-value=0.037 Score=53.33 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 128 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 128 (314)
+.+.++....|+|.|-......-+|+|||+ |+.+|++..+......+|.....
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888899999999999999999999993 57899988877777778876643
No 35
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.50 E-value=0.026 Score=54.26 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
+...++....|+|.|-......-+|+|||+ |+.+|++..+......+|++......
T Consensus 202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 202 AVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 577889999999999999999999999994 68999998888888888887644333
No 36
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.47 E-value=0.035 Score=53.83 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
.+...++....|+|.|-.....+-+|+|| + |+.+|.+..+..++.++|++......
T Consensus 199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999998 4 78999999999999999988765533
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.47 E-value=0.033 Score=53.90 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 131 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY 131 (314)
+.+.++....|+|.|-......-+|+|||+ |+.+|+...+.....++|.+....-+
T Consensus 212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 212 GFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 577889999999999999999999999993 57999997777777778876655443
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.46 E-value=0.023 Score=54.54 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 128 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 128 (314)
.+.+.++....|+|.|.......-+|+|||+ |+.+|++..+..++..+|...-.
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 3667888888999999999999999999994 57999999998888888876643
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.45 E-value=0.038 Score=54.13 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhh
Q 021335 75 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 127 (314)
Q Consensus 75 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g 127 (314)
...+....|+|.|--.....-+|+|||+ |+++|++..+..++.++|.+..
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 3344456899999999999999999994 6899999999988888887644
No 40
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.45 E-value=0.034 Score=54.25 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 128 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 128 (314)
.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|.+...
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 3456677778999999999999999999994 68999999999999999987644
No 41
>PRK10836 lysine transporter; Provisional
Probab=97.35 E-value=0.068 Score=52.04 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 130 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g 130 (314)
+.+.+.....|+|.|-......-+|+|||+ |+.+|++..++..+..+|+.....-
T Consensus 206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566799999999999999999994 6899999999999999999875543
No 42
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.31 E-value=0.04 Score=53.45 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC 126 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~ 126 (314)
++...++....|+|.|-......-+|+|||+ |+.+|++..+..+..+++.+.
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence 3455566667899999999999999999994 689999998887766554443
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.92 E-value=0.16 Score=48.73 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 136 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~ 136 (314)
+...++....++|.|-......-+|+|||. |+.+|.+..++..+..+|+.....-....++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 577888999999999999999999999983 5689999999999999999988776666655
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.81 E-value=0.34 Score=51.04 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
++..++++..||.|-.....+-.|+|+|+ +..++....+..+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888889999999999999999994 689999999999999999998753
No 45
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.68 E-value=0.12 Score=49.68 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHH---HHHHHHHHhhHhhhcCCCCccccccccccccCCchhhHHHHHHHHHHH
Q 021335 5 ACIQIVLSQIPNFHKLSWLSILAAVMSFA---YSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV 81 (314)
Q Consensus 5 ~~i~~pL~~~r~l~~L~~~S~~~~~~~~~---~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 81 (314)
+.+++-+.-..|..++++.+.+=.+.++. ...++.+.+++....+..++.+.++ +.. .+.+.-+...++=.-
T Consensus 139 a~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~--f~g---~~~~~g~i~lafysg 213 (479)
T KOG1287|consen 139 AAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE--FEG---SDTDVGNIALAFYSG 213 (479)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc--ccc---CcCchHHHHHHHHHh
Confidence 44455555566677777666544443332 1122333333433332211111000 110 011223445666667
Q ss_pred HHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccC------c-CCchhH
Q 021335 82 AFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG------F-YEPFWL 154 (314)
Q Consensus 82 ~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~------~-~~~~~~ 154 (314)
.|||.|=..+--+-+|+|||. |.+++++..++.+++++|+++=+..+..- ..+.++.+-. + .-+.+.
T Consensus 214 lfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~aVav~Fa~~~~G~~~ 287 (479)
T KOG1287|consen 214 LFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDAVAVTFADRILGVFA 287 (479)
T ss_pred hhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccchHHHHHHHHhccchH
Confidence 899999999999999999994 78999999999999999999866554332 1222222211 0 001121
Q ss_pred HHHHHHHHHHHHHHhhhhcccc-hHHHHHHHhh-hhCCCCcccCCCCCcccCCCCccccchhhhhhHHHHHHHHHHHHHh
Q 021335 155 VDFANACIAVHLIGAYQVFCQP-IFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI 232 (314)
Q Consensus 155 ~~~~~~~~~i~~~~sypl~~~p-~~~~ie~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~ 232 (314)
..+.++..++.+.+.--.++- .|.. ...-. ...|+. + +.- ..++. -. ....+......++...
T Consensus 288 -~~ip~~ValS~~G~~n~~ifs~SR~~-~~~areG~LP~~-~-s~i--------~~~~~-TP--~~allf~~~~~i~~~~ 352 (479)
T KOG1287|consen 288 -WAIPFSVALSLIGSLNSVIFSSSRLF-YAGAREGHLPAF-F-SMI--------SVRRF-TP--RPALLFSGLLSIVLSL 352 (479)
T ss_pred -HHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHccCccHH-H-Hhh--------cCCCC-CC--hHHHHHHHHHHHHHHH
Confidence 334444444444443211111 1111 10000 001110 0 000 00000 01 1123333444455555
Q ss_pred ccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335 233 FPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR 267 (314)
Q Consensus 233 iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~ 267 (314)
+.|++.+++.++=.......+.+=+++|+|.++++
T Consensus 353 ~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 353 IGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 67999999999988888899999999999998764
No 46
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.12 E-value=0.21 Score=47.40 Aligned_cols=179 Identities=13% Similarity=0.180 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHH-----HHHhhhhhhhhccCCCCCccccc
Q 021335 70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTL-----FYIMCGVMGYLAFGNDAPGNFLT 144 (314)
Q Consensus 70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~-----~y~~~g~~gY~~fG~~v~~~il~ 144 (314)
...+.+.++-+.+|||+|.-.+=---.|-|||+ |..+|+...-..=..+ +..++.+.-+-.++++.++ ...
T Consensus 201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~ 276 (462)
T COG1113 201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVT 276 (462)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHH
Confidence 344788999999999999999999999999995 4566665443333333 3445566666666554333 222
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHHH
Q 021335 145 GFGFYEPFWLVDFANACIAVHLIGAY--QVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY 222 (314)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~i~~~~sy--pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 222 (314)
-+..-+-.+...+.|..+....+.++ .++. .-+.+..+-.+....+.+ .+-+...+| +.-+......
T Consensus 277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys--tsRmL~~la~~g~APk~~-~klsk~gVP--------~~ai~~s~~~ 345 (462)
T COG1113 277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYS--TSRMLYSLAKQGDAPKAF-AKLSKRGVP--------VNAILLSAVV 345 (462)
T ss_pred HHHHcCCcccccceeEEEeechhhcccccccc--cchHHHHHhhcCcccHhH-hhccccCCC--------HHHHHHHHHH
Confidence 22110001122223322222222222 2221 111222111100000000 111111222 4445677777
Q ss_pred HHHHHHHHHhccchHHHHHHhhhhhhh--hHHHHHHHHHHHHHhC
Q 021335 223 VIVSAVLAMIFPFFNDFVGLIGAASFW--PLTVYFPVEMYIARTK 265 (314)
Q Consensus 223 v~~~~~iA~~iP~~~~vlslvGs~~~~--~l~filP~l~~l~~~~ 265 (314)
.++..++-+..| +.++.++-+.++. .....+=.+.|+|.+|
T Consensus 346 ~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 346 LLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888999999 5555555544443 3344455677888886
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.03 E-value=1.6 Score=42.29 Aligned_cols=54 Identities=9% Similarity=-0.077 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 129 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 129 (314)
....+.....|+|.|-.....+-+|+|||+ |+.+|.+..+..+...+|.++-+.
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344566667899999999999999999994 689999999988887666554443
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.61 E-value=0.042 Score=53.26 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
..+.+.++....++|.|-......-+|.|||+ |+.+|....+.....++|.......=...+.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 44788999999999999999999999999994 68999999999999999998766544444433
No 49
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.50 E-value=1.2 Score=43.30 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335 70 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 138 (314)
Q Consensus 70 ~~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v 138 (314)
..|+...++-.-.....|--....+-+|-||++ ++-+|.+..+..+..++-.++-+.-..+-+++.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 556777777777788888889999999999984 567888777777766665555544444555443
No 50
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=93.21 E-value=5.1 Score=37.09 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=46.5
Q ss_pred HHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335 79 GDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 138 (314)
Q Consensus 79 gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v 138 (314)
....++|.+.....-...++|+| |+.+|....+..++..+|...-......+|.+.
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 36778898888888888999987 789999999999999999987777777776553
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.46 E-value=4.4 Score=40.12 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhh-hhhccCCC--CCcccccccC
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM-GYLAFGND--APGNFLTGFG 147 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~-gY~~fG~~--v~~~il~~l~ 147 (314)
+.+.+..+-...|+|.|--.+-..-+|-|||. |..++++..++..++.+|++..+. |-..=.++ ..++....=|
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 44677888899999999999999999999994 789999999999999999988763 44332223 2222211111
Q ss_pred c------CCchhHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCcccCCCCCcccCCCCccccchhhhhhHHH
Q 021335 148 F------YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA 221 (314)
Q Consensus 148 ~------~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 221 (314)
. ..-..+-.++++...+.++.+---.+.|.-+.+..+-+..+-.+ +..+ +. ++.+.+....+
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk-~f~~-----v~------~~g~P~~a~~v 375 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK-FFAR-----VD------RRGVPLVAVLV 375 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch-HHhh-----cC------CCCCchhHHHH
Confidence 1 00112222566666666655543333344444444322111000 0000 00 01111122222
Q ss_pred HHHHHHHHHHhcc-----chHHHHHHhhhhhhhhHHHHHHHHHHHHHhC
Q 021335 222 YVIVSAVLAMIFP-----FFNDFVGLIGAASFWPLTVYFPVEMYIARTK 265 (314)
Q Consensus 222 ~v~~~~~iA~~iP-----~~~~vlslvGs~~~~~l~filP~l~~l~~~~ 265 (314)
..+...+.++... .++.++++.|-- +.+++.+=++.|++.|+
T Consensus 376 ~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 376 SGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHHHHHHeeeee
Confidence 3333444444443 358888887654 57777777888887763
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=90.26 E-value=20 Score=35.24 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhh
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC 126 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~ 126 (314)
+.+....+-+..|+|.|.-.+----.|-+||+ |..+|+++..+-=..++|++.
T Consensus 233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~s 285 (541)
T COG0833 233 FKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILS 285 (541)
T ss_pred hHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHH
Confidence 44666778888899999999988899999994 678888888777777777653
No 53
>PRK11375 allantoin permease; Provisional
Probab=87.24 E-value=31 Score=33.67 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=25.1
Q ss_pred CcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhh----hhccCCCC
Q 021335 87 FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG----YLAFGNDA 138 (314)
Q Consensus 87 ~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~g----Y~~fG~~v 138 (314)
.-.+.++.-+-.|++ ++-.+.-..++.+...+...+|+.. ...||+..
T Consensus 243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 344778888888776 4444444445544444443333322 34556543
No 54
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=82.32 E-value=12 Score=35.60 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHhcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHHhC
Q 021335 215 RLVWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTK 265 (314)
Q Consensus 215 ~~~~r~~~v~~~~~iA~~iP-~~~~vlslvGs~~~~~l~filP~l~~l~~~~ 265 (314)
|..........+.+.++..| -+....+..|++.....+-++|++++++-++
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556677777777 6677788889888899999999999998764
No 55
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=80.32 E-value=53 Score=30.94 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=30.3
Q ss_pred chhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335 89 TVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 136 (314)
Q Consensus 89 ~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~ 136 (314)
...++..+-.|+| +|..+....+..+...+...+|...-.+.++
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3467777777766 5666666677777777777788766666554
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=80.14 E-value=57 Score=31.25 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHH-HhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhc----cCCCC
Q 021335 71 VWRAFQAIGDVA-FAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGNDA 138 (314)
Q Consensus 71 ~~~~~~~~gi~~-faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~----fG~~v 138 (314)
.+....+++..+ +.-..-.+.++.-+-+|+| ++-.+....++.........+|..+-.. +|+..
T Consensus 206 ~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 206 AWAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344444444422 2224555788999999887 4444445666666666666677666554 77653
No 57
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=79.03 E-value=67 Score=31.40 Aligned_cols=62 Identities=19% Similarity=0.050 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 76 QAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 76 ~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
...+..++.|.+++.+.+=+-..+++.+.+++.++........+...-.++|..+...|.+.
T Consensus 239 ~~~~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 239 IAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred HHHHHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555556676666554444445544111234444444444444444455666666665444
No 58
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=74.63 E-value=6.8 Score=33.98 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhccchHHHHHHh---------hhhhhhhHHHHHHHHHHHHHhCCCcc-----hhhHHHHHHHHHHHHHH
Q 021335 221 AYVIVSAVLAMIFPFFNDFVGLI---------GAASFWPLTVYFPVEMYIARTKIRRF-----SFTWVWLKILIWSCFIV 286 (314)
Q Consensus 221 ~~v~~~~~iA~~iP~~~~vlslv---------Gs~~~~~l~filP~l~~l~~~~~~~~-----~~~~~~~~~i~~~g~~~ 286 (314)
.+.+.++++|..++.+|.+++.+ ||.+|-.+.++= |+.+-+.+.. ....|+.|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 44455677777788888877775 788887777765 6555442211 11244677888899998
Q ss_pred HHHHHHH--HHHHHHHhc
Q 021335 287 SLVALVG--SVQGLIQSL 302 (314)
Q Consensus 287 ~v~gt~~--si~~ii~~~ 302 (314)
.+-|++. .|+..-+.+
T Consensus 237 ~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHhHHHHhhHHHHH
Confidence 8888874 455555444
No 59
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=64.53 E-value=29 Score=31.54 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
..+.+.+.-...+.|.+-....-+...+++| ++.+|....+..++..+|...-......||.+
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 174 IKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3456666666778888888888888888888 78889989998888888887766666677755
No 60
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=64.20 E-value=1.3e+02 Score=28.35 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 021335 224 IVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIAR 263 (314)
Q Consensus 224 ~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~ 263 (314)
+.++.++.. .++.++++ +...+.+++|...-+.+
T Consensus 314 l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 314 LFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 334444443 66777764 46778888888776543
No 61
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=63.11 E-value=79 Score=27.95 Aligned_cols=50 Identities=4% Similarity=-0.009 Sum_probs=31.5
Q ss_pred HhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccC
Q 021335 92 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG 147 (314)
Q Consensus 92 ~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~ 147 (314)
..=.+.+++| ++++.+.....+..+++...-..++-.++|.. +.++..+|
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 3445666776 68899888888888877766444444444332 44555555
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=58.39 E-value=67 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=15.5
Q ss_pred hhHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 021335 3 IFACIQIVLSQIPNFHKLSWLSILAAVMSF 32 (314)
Q Consensus 3 i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 32 (314)
+.+++.+-.+..--++...+...+=.+.++
T Consensus 126 i~~~i~~iYt~~GGl~av~~td~iQ~~i~~ 155 (406)
T PF00474_consen 126 IVGVIVIIYTFFGGLRAVAWTDFIQGVIMI 155 (406)
T ss_dssp HHHHHHHHTTCTT------SHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHhhhhHHHHHHHHHHH
Confidence 445566667788888888888876655443
No 63
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=55.55 E-value=1.8e+02 Score=30.12 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhh-hhhh--------ccCCCCCcccc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV-MGYL--------AFGNDAPGNFL 143 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~-~gY~--------~fG~~v~~~il 143 (314)
.+..-+|++.=|-.|...=-+--.++|+|+ |..+--.-.+...++.+|+.-.+ +|-. .||+.+.++..
T Consensus 411 SFtlLvgIfFPsVTGImaGSNrSGDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lV 487 (1075)
T KOG2082|consen 411 SFTLLVGIFFPSVTGIMAGSNRSGDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLV 487 (1075)
T ss_pred hHHHHHHhhccccceeeecCCCCccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEE
Confidence 333455555444444444444456778874 33344455666677777765332 3322 47888776544
Q ss_pred -cccCcCCchhHHHHHHH----HHHHHHHHhhhhc
Q 021335 144 -TGFGFYEPFWLVDFANA----CIAVHLIGAYQVF 173 (314)
Q Consensus 144 -~~l~~~~~~~~~~~~~~----~~~i~~~~sypl~ 173 (314)
.++.. ...|++.+... ...++.+++-|=.
T Consensus 488 va~laW-PsPwVi~IGsFlST~GAgLQsLtgAPRL 521 (1075)
T KOG2082|consen 488 VATLAW-PSPWVIVIGSFLSTCGAGLQSLTGAPRL 521 (1075)
T ss_pred EEEecC-CCceeeehhHHHHHhHHHHhhhcCcHHH
Confidence 33332 12354333322 2335556665533
No 64
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=49.83 E-value=46 Score=24.12 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCc
Q 021335 73 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG 140 (314)
Q Consensus 73 ~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~ 140 (314)
+.....|++..+-.|.....+..++-.+|. .+-+|++.. ..+....-+..|++.|..|| ...+
T Consensus 12 s~vli~GIiLL~~ACIFAfidFSK~~s~~~---~~~wRalSi-i~FIlG~vl~lGilifs~y~-~C~~ 74 (91)
T PHA02680 12 SGVLICGVLLLTAACVFAFVDFSKNTSNVT---DYVWRALSV-TCFIVGAVLLLGLFVFSMYR-KCSG 74 (91)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCCCCc---chhHHHHHH-HHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 344556888888888888888887665652 223333222 22233334556888888888 5443
No 65
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=45.04 E-value=27 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335 108 MKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 138 (314)
Q Consensus 108 ~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v 138 (314)
|..+...+..+..++..+.|..-|.+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4445566666666666777777788888763
No 66
>PRK12768 CysZ-like protein; Reviewed
Probab=43.02 E-value=2e+02 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=21.7
Q ss_pred HHhhhccCCccchhhhhHHHHHHHHHHHHHHhhh
Q 021335 94 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 127 (314)
Q Consensus 94 i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g 127 (314)
-.+++.+| ++++++..+.+.+..++...+
T Consensus 8 a~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 8 ALARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34567776 688998888888887777654
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=39.12 E-value=3.4e+02 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=25.1
Q ss_pred CcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335 87 FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 136 (314)
Q Consensus 87 ~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~ 136 (314)
.-.+.++.-+..|+| ++-......++.+...+...+|...-.+.|+
T Consensus 199 ~~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 199 GGTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hHhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345677777777765 3333334444445555555566554455554
No 68
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=39.01 E-value=51 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=20.9
Q ss_pred hHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhc
Q 021335 93 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 133 (314)
Q Consensus 93 ~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~ 133 (314)
.+.+-.++| +++.|.++...+..- ..++|+.||.-
T Consensus 15 r~lk~~~KP--d~~Ef~~iak~t~iG----~~i~G~IGf~I 49 (61)
T TIGR00327 15 RVLAVCKKP--DLEEYLKVAKVTGIG----IIIVGIIGYII 49 (61)
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344556777 677888776554322 34566666643
No 69
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=38.84 E-value=51 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=20.7
Q ss_pred hHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021335 93 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 132 (314)
Q Consensus 93 ~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~ 132 (314)
.+.+-.++| +++.|.++...+... ..++|.+||.
T Consensus 19 rvl~~~~KP--d~~Ef~~ia~~~~iG----~~i~G~iGf~ 52 (61)
T PRK09400 19 RVLKVARKP--TREEFLLVAKVTGLG----ILLIGLIGFI 52 (61)
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 445556777 677888776554322 3455666664
No 70
>CHL00020 psbN photosystem II protein N
Probab=36.66 E-value=32 Score=21.44 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 112 TAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 112 ~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
...+..+..++..+.|..-|.+||..
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCc
Confidence 34455555566666666777788866
No 71
>PHA03048 IMV membrane protein; Provisional
Probab=34.37 E-value=83 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcc
Q 021335 74 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGN 141 (314)
Q Consensus 74 ~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~ 141 (314)
.....|++..+-.|.....+..++ +|+ .+-+|++. ...+....-+.+|.+-|..||....++
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~--k~~---~~~wRals-ii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKN--KAT---VTVWRALS-GIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcC--CCc---chhHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 334568888888888888888876 331 22333332 222333344567899999999776654
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=34.18 E-value=4e+02 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=18.6
Q ss_pred hhHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 021335 3 IFACIQIVLSQIPNFHKLSWLSILAAVMS 31 (314)
Q Consensus 3 i~~~i~~pL~~~r~l~~L~~~S~~~~~~~ 31 (314)
+.+++.+-.+..--++...+...+=.+.+
T Consensus 122 i~~~i~~~Yt~~GG~~av~~Td~iQ~~i~ 150 (407)
T TIGR00813 122 LLGAITILYTVFGGLKAVVWTDTIQAVIM 150 (407)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 34455556667777777777777665543
No 73
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=33.81 E-value=39 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCC
Q 021335 113 AVGVTTTTLFYIMCGVMGYLAFGNDA 138 (314)
Q Consensus 113 ~~s~~~~~~~y~~~g~~gY~~fG~~v 138 (314)
..+..+..++-.++|..-|.+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 34555556666667777788888653
No 74
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=33.78 E-value=2.4e+02 Score=22.88 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 021335 106 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 177 (314)
Q Consensus 106 ~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 177 (314)
|+.+|.+....=....+..++|+..-..+.++. ++ .|+.+ -..|+-.....++.++.+..+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 567888888888787777888876655555543 22 33322 1367777777777888888877776664
No 75
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=32.81 E-value=2.6e+02 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021335 277 KILIWSCFIVSLVALVGSVQGLIQSL 302 (314)
Q Consensus 277 ~~i~~~g~~~~v~gt~~si~~ii~~~ 302 (314)
..+...|++++..|.+.+++.-.+.+
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777666654
No 76
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=32.05 E-value=1.5e+02 Score=25.09 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhCCCc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 021335 238 DFVGLIGAASFWPLTVYFPVEMYIARTKIRR----------FSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS------ 301 (314)
Q Consensus 238 ~vlslvGs~~~~~l~filP~l~~l~~~~~~~----------~~~~~~~~~~i~~~g~~~~v~gt~~si~~ii~~------ 301 (314)
...=..|++.++-+..++|+...+...|++- ++.+.........+|++..+..+.-|..++.+-
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~GP~C~~~ 124 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEGPLCCTG 124 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCeeecc
Confidence 3444567777888888999999999987521 111222233444566666666666666666652
Q ss_pred -ccccccccc
Q 021335 302 -LKTYKPFQA 310 (314)
Q Consensus 302 -~~~~~~f~~ 310 (314)
.+..-||++
T Consensus 125 ~~~W~ypF~~ 134 (195)
T PF05805_consen 125 NLQWFYPFKD 134 (195)
T ss_pred CCcCCCCCCC
Confidence 233667776
No 77
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=30.50 E-value=4.9e+02 Score=24.92 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=41.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCC
Q 021335 213 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKI 266 (314)
Q Consensus 213 ~~~~~~r~~~v~~~~~iA~~iP~~~~vlslvGs~~~~~l~filP~l~~l~~~~~ 266 (314)
.+|...|....+.+.++.+.+-+.+.++.+.+.+.+..+-+..+++..+..+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 566677766666555555555599999999999999888888888888877765
No 78
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=29.91 E-value=5.2e+02 Score=24.98 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=17.2
Q ss_pred hhHHHHHHHhcCCCCCchhHHHHHHHHH
Q 021335 3 IFACIQIVLSQIPNFHKLSWLSILAAVM 30 (314)
Q Consensus 3 i~~~i~~pL~~~r~l~~L~~~S~~~~~~ 30 (314)
+.+++.+-.+...-++...+...+=.+.
T Consensus 164 i~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 164 IFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445556666777777777766655443
No 79
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=29.56 E-value=1.2e+02 Score=24.78 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=35.6
Q ss_pred hccCcchhHhHHhhhccCCccchhhhhHHHHHHHHH-HHHHHhhhhhhhhccCCCCC
Q 021335 84 AYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTT-TLFYIMCGVMGYLAFGNDAP 139 (314)
Q Consensus 84 af~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~-~~~y~~~g~~gY~~fG~~v~ 139 (314)
++......++-|+++|+| ++..- ..++..+ +++|.+.|+.+|+.+.++-.
T Consensus 23 s~~~~~~~~~wy~~L~kP-----~w~pp-~~~f~~vWtvLy~l~~iSa~lvW~~~~~ 73 (161)
T COG3476 23 SFFISSRDPNWYNNLKKP-----FWLPP-EWAFPPVWTVLYALIGISAYLVWEKGPG 73 (161)
T ss_pred HHHhccccHHHHHhccCC-----CCCCh-HHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566777899999999 33332 3444444 88999999999999966643
No 80
>PTZ00478 Sec superfamily; Provisional
Probab=27.40 E-value=95 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=21.8
Q ss_pred HhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021335 92 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 132 (314)
Q Consensus 92 ~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~ 132 (314)
-.+.+..++| +++.|.++...+.. =+.++|+.||.
T Consensus 31 ~r~vkrctKP--drkEf~kiakat~i----Gf~imG~IGy~ 65 (81)
T PTZ00478 31 RRLIRKCTKP--DAKEYTNIAYACSV----GFFIMGFIGYS 65 (81)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 3455667888 67888877554322 23456788875
No 81
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.55 E-value=3e+02 Score=22.03 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 021335 106 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 177 (314)
Q Consensus 106 ~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~ 177 (314)
+|.+|.+....-....+..++|+..-..+.|+. ..- |+.. -..|+-.....++.++.+..+..+..|-
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~-~~~S-lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIP-NLYS-LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Ccc-cccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 567778888888888888888885544554443 222 2221 1357666666677777777665444453
No 82
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.52 E-value=1.3e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021335 278 ILIWSCFIVSLVALVGSVQGLIQSL 302 (314)
Q Consensus 278 ~i~~~g~~~~v~gt~~si~~ii~~~ 302 (314)
+.+++|++.+++|+..-+.-.+++.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665555555443
No 83
>PLN02351 cytochromes b561 family protein
Probab=24.50 E-value=2.5e+02 Score=24.68 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=43.7
Q ss_pred HhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHHHHHHHHHhhhhcc
Q 021335 95 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFC 174 (314)
Q Consensus 95 ~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~ 174 (314)
|+.++.+ ++.+|.+....-....+..++|+.. .|.++ ++...|+-.- ..|+-...-.++.++-+..+..+.
T Consensus 73 YR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySL-HSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 73 HRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSL-HSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred hhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445543 4558888887777777777777765 44333 2344555332 367666666667777777665554
Q ss_pred cc
Q 021335 175 QP 176 (314)
Q Consensus 175 ~p 176 (314)
.|
T Consensus 144 ~P 145 (242)
T PLN02351 144 HR 145 (242)
T ss_pred cC
Confidence 44
No 84
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=24.30 E-value=2.8e+02 Score=20.02 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=21.4
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhCCC
Q 021335 241 GLIGAASFWPLTVYFPVEMYIARTKIR 267 (314)
Q Consensus 241 slvGs~~~~~l~filP~l~~l~~~~~~ 267 (314)
++.+...+..++++.|+.--.+..+++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~ 28 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSK 28 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456777788999999999988876543
No 85
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=23.28 E-value=5.1e+02 Score=23.56 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=28.0
Q ss_pred HHHHhc-cchHHHHHHhhhhhhhhHHHHHHHHHHHHHhCCCcc
Q 021335 228 VLAMIF-PFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF 269 (314)
Q Consensus 228 ~iA~~i-P~~~~vlslvGs~~~~~l~filP~l~~l~~~~~~~~ 269 (314)
+-+... |-++.+++=.|+.- .-.+++|++.|..+.++.+.
T Consensus 122 iG~YiLapl~~~i~~~~gAai--la~iviP~~~~y~ln~~~~s 162 (299)
T PF05884_consen 122 IGGYILAPLFGIIFGPFGAAI--LAYIVIPLIAYYYLNKEDGS 162 (299)
T ss_pred HHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHHhhcccccCc
Confidence 334444 67787888888875 55678999999987765443
No 86
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=23.15 E-value=1.4e+02 Score=23.77 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=32.3
Q ss_pred hccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 84 AYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 84 af~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
++.......+-|+++++|+ +...-..=-.+=.++|.++|..+|..+.+.
T Consensus 15 ~~~~~~~~~~wy~~L~kP~-----~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~ 63 (148)
T PF03073_consen 15 GYLTPTDVSEWYDSLKKPS-----WTPPGWVFGPVWTILYILMGIASYLVWRKG 63 (148)
T ss_pred HHHcCCcchHHHhhccCCC-----CCCcccHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 3334444478899999993 333322222355779999999999988655
No 87
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=23.15 E-value=5e+02 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021335 276 LKILIWSCFIVSLVALVGSVQGLIQSL 302 (314)
Q Consensus 276 ~~~i~~~g~~~~v~gt~~si~~ii~~~ 302 (314)
...++..|++++..|.+.+++.-.+.+
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888888888877776665
No 88
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=22.05 E-value=1.2e+02 Score=24.79 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHhccC-cchhHhHHhhhccCC--ccchhhhhHHHHHHHHH
Q 021335 77 AIGDVAFAYAF-STVLVEIQDTLKSSP--PENKSMKRATAVGVTTT 119 (314)
Q Consensus 77 ~~gi~~faf~~-~~~~~~i~~~m~~p~--~~~~~~~~v~~~s~~~~ 119 (314)
.+-+-.++|+| +..++-+++|+-++. -+.++|...+..+...-
T Consensus 9 f~~ig~~~FGGg~a~i~~~~~~~V~~~~wlt~~~f~~~~al~q~~P 54 (169)
T PF02417_consen 9 FFKIGLFSFGGGYAIIPLIQREFVERRGWLTEEEFLEGLALAQALP 54 (169)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHhHccCCCCHHHHHHHHHHHHcCC
Confidence 34455678877 778888999987642 33456777666665543
No 89
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=21.74 E-value=1.5e+02 Score=20.33 Aligned_cols=34 Identities=6% Similarity=0.321 Sum_probs=20.6
Q ss_pred HHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhc
Q 021335 94 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 133 (314)
Q Consensus 94 i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~ 133 (314)
+..-.|+| +++.+.++...+-.-. .++|..||+-
T Consensus 21 vl~~arKP--~~eEy~~~aKi~~~Gi----~liG~IGfiI 54 (65)
T COG2443 21 VLKVARKP--DWEEYSKIAKITGLGI----LLIGIIGFII 54 (65)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34455777 6778887776553322 4556666653
No 90
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.17 E-value=3.1e+02 Score=23.60 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccc
Q 021335 106 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQP 176 (314)
Q Consensus 106 ~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 176 (314)
|+..|.+....-....+..++|+..-..+.|+.++.+ .|+.. -..|+-...-.++.++.+..+..+..|
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~-~hfyS-lHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI-PNMYS-LHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-Ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777888777777777778655445555544344 33322 246776667677777877777555445
No 91
>PLN02810 carbon-monoxide oxygenase
Probab=21.15 E-value=4.1e+02 Score=23.21 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCcCCchhHHHHHHHHHHHHHHHhhhhcccc
Q 021335 106 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQP 176 (314)
Q Consensus 106 ~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~v~~~il~~l~~~~~~~~~~~~~~~~~i~~~~sypl~~~p 176 (314)
|+.+|.+....=....+...+|+..-..|.|+. .+ .|+-.- ..|+-...-.++.++-+..+-.+..|
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i-~nlySL-HSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GI-ANLYSL-HSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-CceeeH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566788888877777777778876655665543 33 333221 36766666666677777766554444
No 92
>PRK12488 acetate permease; Provisional
Probab=20.49 E-value=8.4e+02 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.471 Sum_probs=20.5
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMS 31 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~ 31 (314)
++.+++.+--+..--++...|...+=.+.+
T Consensus 185 ii~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T PRK12488 185 VIVGALMVLYVTFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 345566667777888888888877664433
Done!