Query 021335
Match_columns 314
No_of_seqs 138 out of 1266
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.4 1.9E-05 6.4E-10 74.0 17.8 64 71-137 190-253 (445)
2 4djk_A Probable glutamate/gamm 98.1 0.0003 1E-08 67.0 19.7 60 75-137 204-263 (511)
3 3gia_A Uncharacterized protein 97.8 0.00059 2E-08 63.7 16.7 61 72-135 188-248 (444)
4 2jln_A MHP1; hydantoin, transp 84.1 25 0.00085 33.0 14.6 30 2-32 147-176 (501)
5 3mp7_B Preprotein translocase 39.1 36 0.0012 22.1 3.6 33 94-132 18-50 (61)
6 3tx3_A Uncharacterized protein 33.2 1.5E+02 0.0052 24.9 7.7 37 95-136 21-57 (249)
7 3dh4_A Sodium/glucose cotransp 32.5 3.1E+02 0.011 25.5 18.8 30 3-32 139-168 (530)
8 1rh5_B Preprotein translocase 29.0 47 0.0016 22.4 3.0 34 93-132 21-54 (74)
9 2wwb_B SEC61gamma, protein tra 28.8 37 0.0013 22.5 2.4 35 92-132 19-53 (68)
10 2xq2_A Sodium/glucose cotransp 20.9 5.3E+02 0.018 24.3 12.4 30 3-32 168-197 (593)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.36 E-value=1.9e-05 Score=74.03 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 71 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 71 ~~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
..+.+.++....|+|.|.......-+|+|||+ |+.+|....+..++.++|...........+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34677888999999999999999999999993 67999999999999999999877666555543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.08 E-value=0.0003 Score=67.01 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 021335 75 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 137 (314)
Q Consensus 75 ~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~~ 137 (314)
+.++...+|+|.|.......-+|+|||+ |+.+|.+..++.++.++|++..+.-....+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3456778999999999999999999994 67999999999999999999877666666554
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.84 E-value=0.00059 Score=63.73 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhccCcchhHhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccC
Q 021335 72 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 135 (314)
Q Consensus 72 ~~~~~~~gi~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG 135 (314)
.+.+.++....|+|.|.......-+|+|||+ |+.+|.+..+..++.++|...........+
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4677888888999999999999999999992 569999999999999999987765544443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=84.15 E-value=25 Score=32.99 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=19.2
Q ss_pred chhHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 021335 2 IIFACIQIVLSQIPNFHKLSWLSILAAVMSF 32 (314)
Q Consensus 2 li~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 32 (314)
++++++.+++.+. -++.++++..++....+
T Consensus 147 ~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 147 VIFGAIQVVTTFY-GITFIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 3456666777744 47888877777655443
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=39.10 E-value=36 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021335 94 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 132 (314)
Q Consensus 94 i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~ 132 (314)
+.+-.++| +++.|.++...+... ..++|.+||.
T Consensus 18 vlk~~~KP--d~~Ef~~iak~~~iG----~~i~G~iGf~ 50 (61)
T 3mp7_B 18 AFLVTKKP--NWATYKRAAKITGLG----IILIGLIGML 50 (61)
T ss_dssp HHHHSCCC--CTTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34555777 678888876654332 2344555553
No 6
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=33.24 E-value=1.5e+02 Score=24.85 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=23.2
Q ss_pred HhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhhccCC
Q 021335 95 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 136 (314)
Q Consensus 95 ~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~~fG~ 136 (314)
.+.+.+| ++++.+.....+..++|.......+..+++
T Consensus 21 ~~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~~~~~~~ 57 (249)
T 3tx3_A 21 LELIRTK-----GLRRYVVVPILTNLILFSLAFTWLYGEVDY 57 (249)
T ss_dssp HHHHTST-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 688888888888888766554333333333
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=32.47 E-value=3.1e+02 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=13.9
Q ss_pred hhHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 021335 3 IFACIQIVLSQIPNFHKLSWLSILAAVMSF 32 (314)
Q Consensus 3 i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 32 (314)
+.+++.+--+...-++...+.-.+=.+.++
T Consensus 139 i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 139 GLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344555556677777777777766554443
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=29.00 E-value=47 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=20.5
Q ss_pred hHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021335 93 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 132 (314)
Q Consensus 93 ~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~ 132 (314)
.+.+-.++| +++.|.++...+... ..++|++||.
T Consensus 21 rvlk~~~KP--dr~EF~~iak~~~iG----~~imG~IGfi 54 (74)
T 1rh5_B 21 RVWLVLKKP--TKDEYLAVAKVTALG----ISLLGIIGYI 54 (74)
T ss_dssp HHHHSEECC--CHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 445556777 778888876654332 2445666664
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=28.76 E-value=37 Score=22.54 Aligned_cols=35 Identities=9% Similarity=0.398 Sum_probs=21.2
Q ss_pred HhHHhhhccCCccchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 021335 92 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 132 (314)
Q Consensus 92 ~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~gY~ 132 (314)
-.+.+-.++| +++.|.++...+..- ..++|+.||.
T Consensus 19 ~r~lk~~~KP--dr~Ef~~iak~~~iG----~~i~G~IGf~ 53 (68)
T 2wwb_B 19 IRLVKRCTKP--DRKEFQKIAMATAIG----FAIMGFIGFF 53 (68)
T ss_dssp HHHHHHCCCC--CTHHHHHHHHHSSHH----HHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3455566788 778888876654322 2445666664
No 10
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=20.86 E-value=5.3e+02 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=15.8
Q ss_pred hhHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 021335 3 IFACIQIVLSQIPNFHKLSWLSILAAVMSF 32 (314)
Q Consensus 3 i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 32 (314)
+.+++.+..+...-++...+.-.+=.+.++
T Consensus 168 i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml 197 (593)
T 2xq2_A 168 GLALFALVYSIYGGLSAVVWTDVIQVFFLV 197 (593)
T ss_dssp HHHHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344555666677777777776665544333
Done!