BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021340
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis
thaliana GN=At5g35200 PE=1 SV=1
Length = 544
Score = 530 bits (1365), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/304 (81%), Positives = 278/304 (91%)
Query: 10 FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRA 69
R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +ISATRPRA
Sbjct: 11 LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70
Query: 70 DVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHF 129
DVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSHMLNM+HF
Sbjct: 71 DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130
Query: 130 KDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQL 189
KDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +LLE LPALQ
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190
Query: 190 LLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA 249
LLFRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG NLVDKFF+MQR+DA+KA
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250
Query: 250 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR 309
LD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEAP + +
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAPLAAGVK 310
Query: 310 KDQV 313
K+QV
Sbjct: 311 KEQV 314
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis
thaliana GN=At5g57200 PE=3 SV=1
Length = 591
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/317 (64%), Positives = 251/317 (79%), Gaps = 12/317 (3%)
Query: 5 GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
GT SFRKA GALKDTTTV LAKVNS++K+LDIAIVKATNHVE P KE+H+R +F++ S
Sbjct: 2 GTFTSFRKAYGALKDTTTVGLAKVNSEFKDLDIAIVKATNHVESPPKERHVRKIFSATSV 61
Query: 65 TRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHML 124
+PRADVAYCIHAL+KRLSKT NW VA+K LIVIHR LRE DPTF EE++NY R H+L
Sbjct: 62 IQPRADVAYCIHALSKRLSKTRNWVVAMKVLIVIHRTLREGDPTFREELLNYSHRR-HIL 120
Query: 125 NMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR-P----------RTK 173
+++FKDD+SP AWD SAWVR+YALFLEERLEC+RVLKYDIE +R P RT+
Sbjct: 121 RISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTR 180
Query: 174 DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVN 233
L +LLE LPALQ LL+R++GCQP+GAA N++IQ AL+LV ES KIY AI+DG +N
Sbjct: 181 MLSGEDLLEQLPALQQLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIIN 240
Query: 234 LVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQ 293
LVD FFEM RHDA+KAL+IY+RAGQQAE L+EFY+ CK L++ R +F + QPP SFL
Sbjct: 241 LVDMFFEMSRHDAVKALNIYKRAGQQAENLAEFYDYCKGLELARNFQFPTLRQPPPSFLA 300
Query: 294 AMEEYVKEAPRGSTFRK 310
MEEY+KEAP+ + +K
Sbjct: 301 TMEEYIKEAPQSGSVQK 317
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis
thaliana GN=At4g25940 PE=2 SV=1
Length = 601
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/324 (62%), Positives = 251/324 (77%), Gaps = 20/324 (6%)
Query: 6 TQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISAT 65
T SFRKA+GA+KD+TTVS+AKVNS++K+LD+AIVKATNHVE KE+HIR +F++ S
Sbjct: 3 TFNSFRKAVGAIKDSTTVSIAKVNSEFKDLDVAIVKATNHVESAPKERHIRRIFSATSVV 62
Query: 66 RPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLN 125
+PRADVAYCIHALAKRLSKT NW VA+K LIVIHR LRE DPTF EE++NY R H+L
Sbjct: 63 QPRADVAYCIHALAKRLSKTRNWVVAIKVLIVIHRTLREGDPTFREELLNYSH-RGHILR 121
Query: 126 MAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR-P-------------- 170
+++FKDD+SP AWD SAW+R+YALFLEERLEC+RVLKYDIE +R P
Sbjct: 122 ISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNA 181
Query: 171 ----RTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQA 226
RT+ L ELLE LPALQ LL+R++GCQP+G+A N++IQ AL+LV ES KIY A
Sbjct: 182 SQTYRTRMLSDEELLEQLPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCA 241
Query: 227 ISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ 286
I+DG +NLVD FFEM RHDA+KAL+IY+RAGQQAE L++FYE CK L++ R +F + Q
Sbjct: 242 INDGIINLVDMFFEMSRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQ 301
Query: 287 PPASFLQAMEEYVKEAPRGSTFRK 310
PP SFL ME+Y+KEAP+ + +K
Sbjct: 302 PPPSFLATMEDYIKEAPQSGSVQK 325
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis
thaliana GN=At2g01600 PE=2 SV=2
Length = 571
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/312 (63%), Positives = 245/312 (78%), Gaps = 13/312 (4%)
Query: 5 GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
GT +S+RKA GALKD+T V L +VNS+Y +LD+AIVKATNHVE P K++H+R +FA+ S
Sbjct: 2 GTLQSWRKAYGALKDSTKVGLVRVNSEYADLDVAIVKATNHVECPPKDRHLRKIFAATSV 61
Query: 65 TRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHML 124
TR RADVAYCIHAL++RL KT NW VALKTLIVIHR LRE DPTF EE++N+ + R +L
Sbjct: 62 TRARADVAYCIHALSRRLHKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQ-RGRIL 120
Query: 125 NMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR------------PRT 172
+++FKDDSSP AWD SAWVR+YALFLEERLECFRVLKYD E +R RT
Sbjct: 121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDTEAERLPKSNPGQDKGYSRT 180
Query: 173 KDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTV 232
+DLD ELLE LPALQ LL+R++GC+P+GAA HN VIQ AL+LV ES K+Y AI+DG +
Sbjct: 181 RDLDGEELLEQLPALQQLLYRLIGCRPEGAANHNHVIQYALALVLKESFKVYCAINDGII 240
Query: 233 NLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFL 292
NL+DKFFEM +H+A+ +L+IY+RAGQQA LS+FYE CK L++ R +F + +PP SFL
Sbjct: 241 NLIDKFFEMAKHEAITSLEIYKRAGQQARSLSDFYEACKGLELARNFQFPVLREPPQSFL 300
Query: 293 QAMEEYVKEAPR 304
MEEY+KEAPR
Sbjct: 301 TTMEEYIKEAPR 312
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis
thaliana GN=At1g14910 PE=2 SV=2
Length = 692
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 243/312 (77%), Gaps = 13/312 (4%)
Query: 5 GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
GT +S+R+A GALKDTT V L +VNSDY ELD+AIVKATNHVE P K++H+R +F + SA
Sbjct: 2 GTLQSWRRAYGALKDTTKVGLVRVNSDYAELDVAIVKATNHVECPPKDRHLRKIFLATSA 61
Query: 65 TRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHML 124
RPRADVAYCIHAL++RL KT NW VALK L+VIHR LR+ DPTF EE++N+ + + ++
Sbjct: 62 IRPRADVAYCIHALSRRLHKTRNWTVALKALLVIHRLLRDGDPTFREELLNFSQ-KGRIM 120
Query: 125 NMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR------------PRT 172
+++FKDDSSP AWD S WVR+YALFLEERLECFRVLKYDIE +R +T
Sbjct: 121 QISNFKDDSSPVAWDCSGWVRTYALFLEERLECFRVLKYDIEAERLPKVSPGQEKGYSKT 180
Query: 173 KDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTV 232
+DLD +LLE LPALQ LL R++GC+P+GAA HN +IQ ALSLV ES K+Y AI++G +
Sbjct: 181 RDLDGEKLLEQLPALQQLLHRLIGCKPEGAAKHNHIIQYALSLVLKESFKVYCAINEGII 240
Query: 233 NLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFL 292
NLV+KFFEM RH+A+KAL+IY+RAG QA LS FYEVCK L++ R +F + +PP SFL
Sbjct: 241 NLVEKFFEMPRHEAIKALEIYKRAGLQAGNLSAFYEVCKGLELARNFQFPVLREPPQSFL 300
Query: 293 QAMEEYVKEAPR 304
MEEY+++AP+
Sbjct: 301 TTMEEYMRDAPQ 312
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis
thaliana GN=At1g03050 PE=2 SV=1
Length = 599
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 190/327 (58%), Gaps = 34/327 (10%)
Query: 5 GTQKSFRKALGALKDTTTVSLAKVN---SDYKELDIAIVKATNHVERPAKEKHIRAVFAS 61
G+ K F++A+GA+KD T+V LAKVN + ELD+AIVKAT H E PA+EK+IR + +
Sbjct: 2 GSSK-FKRAIGAVKDQTSVGLAKVNGRSASLSELDVAIVKATRHEEFPAEEKYIREILSL 60
Query: 62 ISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRS 121
S +R + + C+ L++RL+KT W VALKTLI+I R L E D + +E+ R +
Sbjct: 61 TSYSR--SYINACVSTLSRRLNKTKCWTVALKTLILIQRLLGEGDQAYEQEIFFATRRGT 118
Query: 122 HMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVL-------------KYDIETD 168
+LNM+ F+D S N+WDYSA+VR+YAL+L+ERL+ FR+ + D E
Sbjct: 119 RLLNMSDFRDVSRSNSWDYSAFVRTYALYLDERLD-FRMQARHGKRGVYCVGGEADEEEQ 177
Query: 169 RPRTKDLDTAELLEHLPA--------------LQLLLFRVLGCQPQGAAVHNFVIQLALS 214
DL TA ++ P LQ LL R L C+P G A +N V+ +AL
Sbjct: 178 DQAAADLSTAIVVRSQPIAEMKTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALY 237
Query: 215 LVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLD 274
+ ES +IY +++ L+++F E+ D++K DI+ R +Q E L +FY CK++
Sbjct: 238 PIVKESFQIYYDVTEIMGILIERFMELDIPDSIKVYDIFCRVSKQFEELDQFYSWCKNMG 297
Query: 275 IGRGERFIKIEQPPASFLQAMEEYVKE 301
I R + +IE+ L M+E++++
Sbjct: 298 IARSSEYPEIEKITQKKLDLMDEFIRD 324
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis
thaliana GN=At4g02650 PE=2 SV=2
Length = 611
Score = 194 bits (494), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 188/331 (56%), Gaps = 37/331 (11%)
Query: 5 GTQKSFRKALGALKDTTTVSLAKV---NSDYKELDIAIVKATNHVERPAKEKHIRAVFAS 61
G+ K ++A+GA+KD T+V LAKV +S EL+IA+VKAT H + PA++K+IR +
Sbjct: 2 GSSK-LKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHDDYPAEDKYIREILCL 60
Query: 62 ISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRS 121
S +R V+ C+ L++RL+KT NW+VALKTLI+I R L + D + +E+ R +
Sbjct: 61 TSYSRNY--VSACVATLSRRLNKTKNWSVALKTLILIQRLLTDGDRAYEQEIFFATRRGT 118
Query: 122 HMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE------------------------- 156
+LNM+ F+D S ++WDYSA+VR+YAL+L+ERL+
Sbjct: 119 RLLNMSDFRDASQSDSWDYSAFVRTYALYLDERLDYRMQGRRGKKKSGGGGGGDGDSGEE 178
Query: 157 -CFRVLKYDIETDRPRTK-----DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQ 210
R DI + K ++ T ++ + LQ LL R L C+P G A +N V+
Sbjct: 179 DDHRGTSNDIRSKAIVVKSKPVAEMKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVI 238
Query: 211 LALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 270
+A+ + ES ++Y I++ L+++F E+ HD++K +I+ R +Q + L FY C
Sbjct: 239 VAMYPIVKESFQLYYNITEIMGVLIERFMELDIHDSIKVYEIFCRVSKQFDELDPFYGWC 298
Query: 271 KSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
K++ + R + ++E+ L M+E++++
Sbjct: 299 KNMAVARSSEYPELEKITQKKLDLMDEFIRD 329
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana
GN=AP180 PE=1 SV=1
Length = 653
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 181/326 (55%), Gaps = 36/326 (11%)
Query: 10 FRKALGALKDTTTVSLAKV------NSDYKELDIAIVKATNHVER-PAKEKHIRAVFASI 62
+KA+GA+KD T++SLAKV D L++AI+KAT+H E P ++ + + I
Sbjct: 5 LKKAIGAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEILGII 64
Query: 63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
S+ + A A C A+ +R+ +T NW VALK+L+++ R ++ DP F EV++ + +
Sbjct: 65 SSKKSHA--ASCAAAIGRRIGRTRNWIVALKSLVLVLRIFQDGDPYFPREVLHAMKRGAK 122
Query: 123 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYD------------------ 164
+LN++ F+DDS+ WD++A+VR++AL+L+ERL+CF K
Sbjct: 123 ILNLSSFRDDSNSCPWDFTAFVRTFALYLDERLDCFLTGKLQRRYTNREQTGRISTNSTT 182
Query: 165 ---------IETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSL 215
I++ P +D+ LL+ + Q LL R + +P G A N +++++L
Sbjct: 183 RSRFNPKAGIKSHEPAVRDMKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLYA 242
Query: 216 VASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDI 275
V ES +Y+ ISDG L+D FF +Q + A RA +Q E L+ FY++ KS+ I
Sbjct: 243 VMQESFDLYRDISDGLALLLDSFFHLQYQSCINAFQACVRASKQFEELNAFYDLSKSIGI 302
Query: 276 GRGERFIKIEQPPASFLQAMEEYVKE 301
GR + I++ L+ ++E++K+
Sbjct: 303 GRTSEYPSIQKISLELLETLQEFLKD 328
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis
thaliana GN=At4g32285 PE=1 SV=2
Length = 635
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 186/354 (52%), Gaps = 63/354 (17%)
Query: 9 SFRKALGALKDTTTVSLAKVNSDY-KELDIAIVKATNHVERPAKEKHIRAVFASISATRP 67
S RKA+G +KD T++ +AKV S+ +L++AIVKAT+H + + +K+IR + + S +R
Sbjct: 4 SMRKAIGVVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDQSSDKYIREILSLTSLSR- 62
Query: 68 RADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMA 127
V C+ ++++RL KT +W VALK L+++HR L E DP F EE++ R + +LNM+
Sbjct: 63 -GYVHACVTSVSRRLKKTRDWIVALKALMLVHRLLNEGDPLFQEEILYATRRGTRILNMS 121
Query: 128 HFKDDSSPNAWDYSAWVRSYALFLEERLEC------------------------FRVLKY 163
F+D++ ++WD+SA+VR+YA +L++RLE + +
Sbjct: 122 DFRDEAHSSSWDHSAFVRTYASYLDQRLELALFERRGRNGGGSSSSHQSNGDDGYNRSRD 181
Query: 164 DIETDRPRTKDLDTAE----------------------------LLEHLPA--------L 187
D + PRT D +T L E P L
Sbjct: 182 DFRSPPPRTYDYETGNGFGMPKRSRSFGDVNEIGAREEKKSVTPLREMTPERIFGKMGHL 241
Query: 188 QLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDAL 247
Q LL R L C+P G A ++ +I +A+ V ES ++Y I + L+DKFF+M+ D +
Sbjct: 242 QRLLDRFLSCRPTGLAKNSRMILIAMYPVVKESFRLYADICEVLAVLLDKFFDMEYTDCV 301
Query: 248 KALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
KA D Y A +Q + L FY CK + R + ++++ + L+ +EE+V++
Sbjct: 302 KAFDAYASAAKQIDELIAFYHWCKDTGVARSSEYPEVQRITSKLLETLEEFVRD 355
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis
thaliana GN=At2g25430 PE=1 SV=2
Length = 653
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 108/149 (72%), Gaps = 3/149 (2%)
Query: 9 SFRKALGALKDTTTVSLAKVNSDY-KELDIAIVKATNHVERPAKEKHIRAVFASISATRP 67
S RKA+GA+KD T++ +AKV S+ +L++AIVKAT+H + PA EK+IR + S +R
Sbjct: 4 SIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILNLTSLSR- 62
Query: 68 RADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMA 127
+ C+ ++++RLSKT +W VALK L+++HR L E DP F EE++ R + MLNM+
Sbjct: 63 -GYILACVTSVSRRLSKTRDWVVALKALMLVHRLLNEGDPIFQEEILYSTRRGTRMLNMS 121
Query: 128 HFKDDSSPNAWDYSAWVRSYALFLEERLE 156
F+D++ ++WD+SA+VR+YA +L++RLE
Sbjct: 122 DFRDEAHSSSWDHSAFVRTYAGYLDQRLE 150
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 187 LQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDA 246
LQ LL R L +P G A ++ +I +AL V ES K+Y I + L+DKFF+M+ D
Sbjct: 261 LQRLLDRFLSLRPTGLAKNSRMILIALYPVVRESFKLYADICEVLAVLLDKFFDMEYSDC 320
Query: 247 LKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE-APRG 305
+KA D Y A +Q + L FY CK + R + ++++ + L+ +EE+V++ A RG
Sbjct: 321 VKAFDAYASAAKQIDELIAFYNWCKETGVARSSEYPEVQRITSKLLETLEEFVRDRAKRG 380
Query: 306 STFRKDQVH 314
+ + ++
Sbjct: 381 KSPERKEIE 389
>sp|Q7M6Y3|PICA_MOUSE Phosphatidylinositol-binding clathrin assembly protein OS=Mus
musculus GN=Picalm PE=1 SV=1
Length = 660
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 140/266 (52%), Gaps = 14/266 (5%)
Query: 39 IVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVI 98
+ KAT H K+KH+ + + ++ +L +R + + +W V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 99 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158
H + + E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 83 HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 159 RVLKYDIETDRPRTKD-----LDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLAL 213
R + +D T R D ++T +LL+ +P +Q + +L + N VI A
Sbjct: 139 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 197
Query: 214 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 273
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 198 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 257
Query: 274 DIGRGERFIKIEQPPASFLQAMEEYV 299
I RG+ + Q P+S L A+E+++
Sbjct: 258 GIDRGD-IPDLSQAPSSLLDALEQHL 282
>sp|Q13492|PICAL_HUMAN Phosphatidylinositol-binding clathrin assembly protein OS=Homo
sapiens GN=PICALM PE=1 SV=2
Length = 652
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 140/266 (52%), Gaps = 14/266 (5%)
Query: 39 IVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVI 98
+ KAT H K+KH+ + + ++ +L +R + + +W V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 99 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 83 HHLMVY----GNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 159 RVLKYDIETDRPRTKD-----LDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLAL 213
R + +D T R D ++T +LL+ +P +Q + +L + N VI A
Sbjct: 139 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 197
Query: 214 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 273
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 198 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 257
Query: 274 DIGRGERFIKIEQPPASFLQAMEEYV 299
I RG+ + Q P+S L A+E+++
Sbjct: 258 GIDRGD-IPDLSQAPSSLLDALEQHL 282
>sp|O55012|PICA_RAT Phosphatidylinositol-binding clathrin assembly protein OS=Rattus
norvegicus GN=Picalm PE=1 SV=1
Length = 640
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 140/266 (52%), Gaps = 14/266 (5%)
Query: 39 IVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVI 98
+ KAT H K+KH+ + + ++ +L +R + + +W V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 99 HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+ +
Sbjct: 83 HHLMVY----GNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 159 RVLKYDIETDRPRTKD-----LDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLAL 213
R + +D T R D ++T +LL+ +P +Q + +L + N VI A
Sbjct: 139 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 197
Query: 214 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 273
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V + +
Sbjct: 198 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 257
Query: 274 DIGRGERFIKIEQPPASFLQAMEEYV 299
I RG+ + Q P+S L A+E+++
Sbjct: 258 GIDRGD-IPDLSQAPSSLLDALEQHL 282
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1
SV=2
Length = 907
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 136/271 (50%), Gaps = 20/271 (7%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
A+ KAT H K+KH+ + + + T ++ L +R + + +W V K L+
Sbjct: 25 AVCKATTHEVMGPKKKHLDYLIQATNETN--VNIPQMADTLFERATNS-SWVVVFKALVT 81
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S + +D S ++R Y+ +L E+
Sbjct: 82 THHLMVHG----NERFIQYLASRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAFS 137
Query: 158 FRVLKYDIETDRPRTK--------DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVI 209
+R + +D R K + +LL+ +P LQ + +L + N VI
Sbjct: 138 YRQMAFDFA----RVKKGADGVMRTMAPEKLLKSMPILQGQIDALLEFDVHPNELTNGVI 193
Query: 210 QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEV 269
A L+ + K++ +DG +NL++KFFEM++ AL+IY+R + R+SEF +V
Sbjct: 194 NAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKRFLTRMTRVSEFLKV 253
Query: 270 CKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
+ + I +G+ + Q P+S ++ +E+++
Sbjct: 254 AEQVGIDKGD-IPDLTQAPSSLMETLEQHLN 283
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mus musculus GN=Snap91 PE=1
SV=1
Length = 901
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 136/271 (50%), Gaps = 20/271 (7%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
A+ KAT H K+KH+ + + + T ++ L +R + + +W V K L+
Sbjct: 25 AVCKATTHEVMGPKKKHLDYLIQATNETN--VNIPQMADTLFERATNS-SWVVVFKALVT 81
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S + +D S ++R Y+ +L E+
Sbjct: 82 THHLMVHG----NERFIQYLASRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAFS 137
Query: 158 FRVLKYDIETDRPRTK--------DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVI 209
+R + +D R K + +LL+ +P LQ + +L + N VI
Sbjct: 138 YRQMAFDFA----RVKKGADGVMRTMVPEKLLKSMPILQGQIDALLEFDVHPNELTNGVI 193
Query: 210 QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEV 269
A L+ + K++ +DG +NL++KFFEM++ AL+IY+R + R+SEF +V
Sbjct: 194 NAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKRFLTRMTRVSEFLKV 253
Query: 270 CKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
+ + I +G+ + Q P+S ++ +E+++
Sbjct: 254 AEQVGIDKGD-IPDLTQAPSSLMETLEQHLN 283
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus norvegicus GN=Snap91
PE=1 SV=1
Length = 915
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 135/271 (49%), Gaps = 20/271 (7%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
A+ KAT H K+KH+ + + + T ++ L +R + + +W V K L+
Sbjct: 25 AVCKATTHEVMGPKKKHLDYLIQATNETN--VNIPQMADTLFERATNS-SWVVVFKALVT 81
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S + +D S ++R Y+ +L E+
Sbjct: 82 THHLMVHG----NERFIQYLASRNTLFNLSNFLDKSGSHGYDMSTFIRRYSRYLNEKAFS 137
Query: 158 FRVLKYDIETDRPRTK--------DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVI 209
+R + +D R K + +LL+ +P LQ + +L + N VI
Sbjct: 138 YRQMAFDFA----RVKKGADGVMRTMVPEKLLKSMPILQGQIDALLEFDVHPNELTNGVI 193
Query: 210 QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEV 269
A L+ + K++ +DG +NL++KFFEM++ AL+IY+R + R+SEF +V
Sbjct: 194 NAAFMLLFKDLIKLFACYNDGVINLLEKFFEMKKGQCKDALEIYKRFLTRMTRVSEFLKV 253
Query: 270 CKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
+ I +G+ + Q P+S ++ +E+++
Sbjct: 254 ADEVGIDKGD-IPDLTQAPSSLMETLEQHLN 283
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 137/278 (49%), Gaps = 24/278 (8%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
++ KAT K+KH+ + + P + + + L +R S+ NW V K+LI
Sbjct: 27 SVCKATTEECIGPKKKHLDYLVHCTN--EPNVSIPHLANLLIER-SQNANWVVVYKSLIT 83
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS--------PNA---WDYSAWVRS 146
H + +E + Y S + N++ F D + P +D S ++R
Sbjct: 84 THHLM----AYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 139
Query: 147 YALFLEERLECFRVLKYDI-----ETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQG 201
YA +L E+ +R + +D + + ++ +LL+ LP LQ L +L Q
Sbjct: 140 YAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQS 199
Query: 202 AAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAE 261
+ N VI ++ L+ + +++ +DG +NL++K+F+M + A ALD+Y++ + +
Sbjct: 200 NDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMD 259
Query: 262 RLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYV 299
R+ EF +V +++ I +G+ + + P+S L A+E+++
Sbjct: 260 RVGEFLKVAENVGIDKGD-IPDLTKAPSSLLDALEQHL 296
>sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11
OS=Caenorhabditis elegans GN=unc-11 PE=1 SV=1
Length = 586
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 14/287 (4%)
Query: 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALK 93
+L I KAT K+KH+ + + P + + L +R ++ NW V K
Sbjct: 36 QLGKTICKATTEEVMAPKKKHLDYLLHCTN--EPNVSIPSMANLLIER-TQNPNWTVVYK 92
Query: 94 TLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDD-SSPNAWDYSAWVRSYALFLE 152
LI IH + + F + Y S + N+ F D +D S VR YA ++
Sbjct: 93 ALITIHNIMCYGNERFSQ----YLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIG 148
Query: 153 ERLECFRVLKYDI-ETDRPRT----KDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNF 207
E++ +R+ +D + R R + + T +LL+ +P LQ + +L + ++N
Sbjct: 149 EKINTYRMCAFDFCKVKRGREDGLLRTMHTDKLLKTIPILQNQIDALLEFSVTTSELNNG 208
Query: 208 VIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFY 267
VI + L+ + +++ +DG +N+++K+F+M + ALD Y+ + ++++EF
Sbjct: 209 VINCSFILLFRDLIRLFACYNDGIINVLEKYFDMNKKQCRDALDTYKSFLTRLDKVAEFL 268
Query: 268 EVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQVH 314
V +S+ I RGE + + PAS L+A+E ++ G Q H
Sbjct: 269 RVAESVGIDRGE-IPDLTRAPASLLEALEAHLIHLEGGKAPPPTQQH 314
>sp|Q9C502|CAP11_ARATH Putative clathrin assembly protein At1g33340 OS=Arabidopsis
thaliana GN=At1g33340 PE=2 SV=1
Length = 374
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 143/303 (47%), Gaps = 25/303 (8%)
Query: 10 FRKALGALKDTTTVSLAKVNSDYKE-----LDIAIVKATNHVERPAKEKHIRAVFASISA 64
FR+ LG KD ++ A V +Y E +++A+V+AT+H + P +K + + +S
Sbjct: 9 FRQVLGLAKDHASIGRAIVQ-NYNEKAFFDIEVAVVRATSHDDCPVDDKTMHEILFLVSN 67
Query: 65 TRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHM- 123
T + + +++RL+KT + VA KTL++ HR LR + E+ ++ + H+
Sbjct: 68 TP--GSIPFLAEQISRRLAKTRDCLVAGKTLLLFHRLLRGSSRSI-EQQLHIAHTSGHLQ 124
Query: 124 LNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF--------RVLKYDIETDRPRTKDL 175
+ + F ++ ++++Y +L+ER+ V+ + R + K +
Sbjct: 125 IGCSWFMMSLDSRSF---VFLQNYVAYLQERVGWIINQAGKLEPVMSGGTKFSRYKEKSM 181
Query: 176 DTAELLEH-LPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNL 234
D L+ H LP Q + +VL C P A + ++Q A + ES ++Y SDG L
Sbjct: 182 D---LVFHILPKCQEFIAQVLKCSPVDAWPIDNLVQAATGNILKESFQVYMTYSDGMTAL 238
Query: 235 VDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQA 294
V F++ R A + R+A QQ + L Y+ C+ + + ++ + A
Sbjct: 239 VSMLFDLSRPARDLACGMLRKASQQIQDLRILYDKCRGFAGMKSLDYPSVQAISMDHIVA 298
Query: 295 MEE 297
+EE
Sbjct: 299 LEE 301
>sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240 OS=Arabidopsis
thaliana GN=At1g25240 PE=3 SV=1
Length = 376
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 21/300 (7%)
Query: 8 KSFRKALGALKDTTTVSLA----KVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASIS 63
K +++A GALKD T+ K + +LD AI+ AT+H + + V+ I
Sbjct: 2 KLWKRASGALKDRKTLFTIGFSRKTSFRNPDLDSAIIHATSHDDSSVDYHNAHRVYKWIR 61
Query: 64 ATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHM 123
++ A++ +HAL+ R+++T +W VALK L+++H L +V + R
Sbjct: 62 SSP--ANLKPLVHALSSRVNRTRSWIVALKALMLVHGVL-------CCKVTSLQEIRRLP 112
Query: 124 LNMAHFKDDSS--PNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTA-EL 180
+++ F D S W ++A++R+Y FL++ + D R + LD+ +
Sbjct: 113 FDLSDFSDGHSRPSKTWGFNAFIRAYFSFLDQ----YSFFLSDQIRRRHKKPQLDSVNQE 168
Query: 181 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 240
LE + LQ LL +L +P + +I A+ V E IY I L+ K
Sbjct: 169 LERIEKLQSLLHMLLQIRPMADNMKKTLILEAMDCVVIEIFDIYGRICSAIAKLLIKIHP 228
Query: 241 MQ-RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYV 299
+ +A+ AL I ++A Q E L+ ++E CK + K P ++A+E+ +
Sbjct: 229 AAGKAEAVIALKIVKKATSQGEDLALYFEFCKEFGVSNAHDIPKFVTIPEEDIKAIEKVI 288
>sp|O60167|YHC3_SCHPO ENTH domain-containing protein C19F8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC19F8.03c PE=1
SV=1
Length = 649
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 121/270 (44%), Gaps = 18/270 (6%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
A+ KAT K KH+ + + T + I AL +RL K +W + KTLIV
Sbjct: 13 AVKKATKVKLAAPKYKHVEIILEA--TTEDPETLENVIQALCERL-KEQSWTIVFKTLIV 69
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H L+E P I R +L + K S + +Y+ FL ER +
Sbjct: 70 FHVMLKEGAPN---TTIVALSQRPRILEV--LKASS---LLAQGKNIYNYSRFLSERAKQ 121
Query: 158 FRVLKYDIET--DRPRTK----DLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQL 211
+ L D D P+ K L+ LL ++ +Q L R++ CQ + N +
Sbjct: 122 YGRLGVDYAQVGDAPKKKIREMKLENG-LLRNVEGIQAQLRRLIKCQFVAEEIDNDIAIT 180
Query: 212 ALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCK 271
A L+ + +++A++ G +N+++ +FEM HDA ++L IY+ Q E + + +
Sbjct: 181 AFRLLVGDLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFVNQTEDIINYLSTAR 240
Query: 272 SLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
SL+ I+ P S ++EEY+ +
Sbjct: 241 SLEFVTKFPVPNIKHAPISLTASLEEYLND 270
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis
thaliana GN=At4g40080 PE=2 SV=2
Length = 365
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 32/279 (11%)
Query: 5 GTQKSFRKALGALKDTTTVS---LAKVNSDYKELD--IAIVKATNH-VERPAKEKHIRAV 58
G SF +G +KD + S L N+ K L +++++AT H P +H+ +
Sbjct: 2 GRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAVI 61
Query: 59 FASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGR 118
++ T RA + + ++ +RL T + VALK+LI+IH ++ +++ +
Sbjct: 62 LSA--GTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPA 119
Query: 119 SRS-HMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDT 177
S + L ++ F+D+ SP W+ S+WVR YAL+LE L R++ + I + +
Sbjct: 120 SGGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEY 179
Query: 178 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDK 237
E++ L LL R + AL + E+ KI G +L DK
Sbjct: 180 EEMVSSLTNSDLL--REID---------------ALVGLLEEACKIPDLPFSGGKSLADK 222
Query: 238 FFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIG 276
++ D + +++ + R +EF E +L G
Sbjct: 223 ITQLVGEDYVSSIN------ELYTRFNEFKERSNTLSFG 255
>sp|Q9C9X5|CAP12_ARATH Putative clathrin assembly protein At1g68110 OS=Arabidopsis
thaliana GN=At1g68110 PE=2 SV=1
Length = 379
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 137/302 (45%), Gaps = 21/302 (6%)
Query: 8 KSFRKALGALKDTTT---VSLAKVNSDYKELDI--AIVKATNHVERPAKEKHIRAVFASI 62
K +++A A+KD + V ++ NS Y+ D+ AI+KAT+H + + V+ I
Sbjct: 2 KLWKRAAAAIKDRKSLLAVGFSRRNSSYRNADLEAAIIKATSHDDSSVDYSNAHRVYKWI 61
Query: 63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
++ ++ ++A++ R++ T +W VALK+L+++H L P+ G R
Sbjct: 62 RSSP--LNLKTLVYAISSRVNHTRSWIVALKSLMLLHGVLCCKVPSV------VGEFRRL 113
Query: 123 MLNMAHFKDDSS--PNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRT--KDLDTA 178
+++ F D S W ++ +VR+Y FL + + + R+ K D+
Sbjct: 114 PFDLSDFSDGHSCLSKTWGFNVFVRTYFAFLHHYSSFLSDQIHRLRGNNRRSLEKTSDSV 173
Query: 179 -ELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDK 237
+ LE + LQ LL +L +P + +I A+ + ES IY I + ++
Sbjct: 174 IQELERIQKLQSLLDMILQIRPVADNMKKTLILEAMDCLVIESINIYGRICGAVMKVLPL 233
Query: 238 FFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEE 297
+ +A L I + Q E L ++E CK + + + P ++A+E+
Sbjct: 234 ---AGKSEAATVLKIVNKTTSQGEDLIVYFEFCKGFGVSNAREIPQFVRIPEEEVEAIEK 290
Query: 298 YV 299
+
Sbjct: 291 MI 292
>sp|P53309|AP18B_YEAST Clathrin coat assembly protein AP180B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAP1802 PE=1 SV=1
Length = 568
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 122/264 (46%), Gaps = 28/264 (10%)
Query: 49 PAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALR--EVD 106
P K+K++ + + S+ R ++ HAL RLS T W + K LIV+H ++ E D
Sbjct: 19 PPKQKYVDPILSGTSSARGLQEIT---HALDIRLSDTA-WTIVYKALIVLHLMIQQGEKD 74
Query: 107 PTFHEEVINYGRSRSHMLNMAHFKDDSSPNAW---DYSAWVRSYALFLEERLECFRVLKY 163
T R SH L++ + S W D A R Y +L+ R E + L
Sbjct: 75 VTL--------RHYSHNLDVFQLRKISHTTKWSSNDMRALQR-YDEYLKTRCEEYGRLGM 125
Query: 164 DIETDRPRT------KDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVA 217
D D + L E L+H+ +L++ + ++ + + + N ++ A L+
Sbjct: 126 DHLRDNYSSLKLGSKNQLSMDEELDHVESLEIQINALIRNKYSVSDLENHLLLYAFQLLV 185
Query: 218 SESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGR 277
+ +Y A+++G + L++ FFE+ A + LD+Y+ E + + ++ K++
Sbjct: 186 QDLLGLYNALNEGVITLLESFFELSIEHAKRTLDLYKDFVDMTEYVVRYLKIGKAV---- 241
Query: 278 GERFIKIEQPPASFLQAMEEYVKE 301
G + I+ + ++EE+++E
Sbjct: 242 GLKIPVIKHITTKLINSLEEHLRE 265
>sp|Q9SHV5|CAP14_ARATH Putative clathrin assembly protein At2g01920 OS=Arabidopsis
thaliana GN=At2g01920 PE=2 SV=3
Length = 312
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 53/311 (17%)
Query: 7 QKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASI---- 62
K +R+ GA+KD L+ + + ++ A++KAT+H + ++++ ++ I
Sbjct: 5 MKLWRRVSGAIKD----KLSLITATDEKFTAAVIKATSHNDVSMDIENVQFIYRYIQSNP 60
Query: 63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIH----RALREVDPT--FHEEVINY 116
S+ +P I A++ R+ T NW VALK L+++H + VD ++ +
Sbjct: 61 SSFKP------IIRAVSLRVEHTRNWTVALKCLMLLHGLFFSGIMTVDSIGRLPFDLSGF 114
Query: 117 GRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLD 176
GR +S F + +VR+Y +FL+ER +L Y+ R
Sbjct: 115 GRRKSRFSRTGRF-----------NIFVRAYFMFLDER----SILYYNKNMIR------- 152
Query: 177 TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLV- 235
LE + +Q ++ ++ +P G VI+ A+ V SE I I G +
Sbjct: 153 ----LEIIVKMQRIVDSLMRIKPIGET--PLVIE-AMEYVISEVVLINGHICRGFAGFLS 205
Query: 236 ---DKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFL 292
E+ +A A++I ++ Q E+L +++E C+ + + I + S +
Sbjct: 206 DVQSNMLEISSAEADLAMNIVAKSLSQREKLFKYFEFCRGFGVTNAQETSNILRITESQM 265
Query: 293 QAMEEYVKEAP 303
+++ + AP
Sbjct: 266 IVLDKLLHIAP 276
>sp|P38856|AP18A_YEAST Clathrin coat assembly protein AP180A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAP1801 PE=1 SV=1
Length = 637
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 25/266 (9%)
Query: 49 PAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPT 108
P K+K++ + T D + L R++ T W + K+L+V+H +RE
Sbjct: 18 PPKQKYLDPILL---GTSNEEDFYEIVKGLDSRINDTA-WTIVYKSLLVVHLMIREGS-- 71
Query: 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETD 168
+ + Y ++ + + + + D A R Y +L+ R F +K D D
Sbjct: 72 -KDVALRYYSRNLEFFDIENIRGSNGSASGDMRALDR-YDNYLKVRCREFGKIKKDYVRD 129
Query: 169 RPRTKDLDTAEL-------------LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSL 215
RT L++ L+H+ +L++ + ++ + + N +I L
Sbjct: 130 GYRTLKLNSGNYGSSRNKQHSINIALDHVESLEVQIQALIKNKYTQYDLSNELIIFGFKL 189
Query: 216 VASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDI 275
+ + +Y A+++G + L++ FFE+ H+A + LD+Y+ E + + + K+
Sbjct: 190 LIQDLLALYNALNEGIITLLESFFELSHHNAERTLDLYKTFVDLTEHVVRYLKSGKT--- 246
Query: 276 GRGERFIKIEQPPASFLQAMEEYVKE 301
G + I+ ++++EE++ E
Sbjct: 247 -AGLKIPVIKHITTKLVRSLEEHLIE 271
>sp|Q9LQW4|CAP15_ARATH Putative clathrin assembly protein At1g14686 OS=Arabidopsis
thaliana GN=At1g14686 PE=3 SV=1
Length = 339
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 137/306 (44%), Gaps = 27/306 (8%)
Query: 7 QKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNH----VERPAKEKHIRAVFASI 62
K +++A LKD ++ A L A+VKAT+H ++ + + R V +S
Sbjct: 1 MKLWKRAAVVLKDGPSLIAAD-----DILTAAVVKATSHDELSIDTESAQFIYRHVLSSP 55
Query: 63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
S+ +P + ++ R+ +T +WAVALK L+++H T E + GR
Sbjct: 56 SSLKP------LVSLISSRVKRTRSWAVALKGLMLMH-GFFLCKSTVAESI---GRLPFD 105
Query: 123 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL-L 181
+ + + ++ +VR+Y FL+ R F + +R R + + + L
Sbjct: 106 LSSFGEGNSRIMSKSGGFNLFVRAYFAFLDRRSILFH------DGNRHRYNEESSVLIRL 159
Query: 182 EHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFF-E 240
+ +Q+++ ++ +P G + VI A+ V SE +IY I ++ +
Sbjct: 160 VIIRKMQIIVDSLIRIKPIGENMMIPVINEAMENVVSEIMEIYGWICRRIAEVLPNVHSK 219
Query: 241 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
+ + +A AL I ++ +Q L +++E CK L + + + P + + ++E V+
Sbjct: 220 IGKTEADLALKIVAKSMKQGGELKKYFEFCKDLGVSNAQEIPNFVRIPEADVIHLDELVR 279
Query: 301 EAPRGS 306
A S
Sbjct: 280 TAMESS 285
>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410 OS=Arabidopsis
thaliana GN=At5g10410 PE=2 SV=2
Length = 338
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 14 LGALKDTTTVSLAKV-----NSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPR 68
+G KD ++ A++ ++ K + +A++K+T P K + V A IS + R
Sbjct: 9 IGKFKDKASIGKARLVHSFGSTAVKYIHLALLKSTTRT--PNKPPNSDYVSAVISYSNSR 66
Query: 69 ADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAH 128
A AL RL T N VA K+LIVIH+ ++ F E + +GR+ L +
Sbjct: 67 YAPAAFSAALW-RLRVTKNAIVATKSLIVIHKLIKSSRDKF--EGLGHGRNN---LKLNE 120
Query: 129 FKDDSSPNAWDYSAWVRSYALFLE 152
F D SS + S W+R Y +L+
Sbjct: 121 FSDKSSNLTLELSQWIRWYGQYLD 144
>sp|P02215|GLB_CERRH Globin OS=Cerithidea rhizophorarum PE=1 SV=1
Length = 151
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 54 HIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113
H AVFA I + D A C++ LA +LS+ H + K +R+V P F +E
Sbjct: 66 HSMAVFAGIGSMIDSMDDADCMNGLALKLSRNH---IQRKIGASRFGEMRQVFPNFLDEA 122
Query: 114 INYGRS 119
+ G S
Sbjct: 123 LGGGAS 128
>sp|Q9FKQ2|CAP18_ARATH Putative clathrin assembly protein At5g65370 OS=Arabidopsis
thaliana GN=At5g65370 PE=3 SV=1
Length = 295
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 33 KELDIAIVKATNHV-ERPAKEKHIRAVFASISATRPRADVAY---CIHALAKRLSKTHNW 88
K +D+A++KAT+H P +K++ + ++I D Y + A+ RL T +
Sbjct: 32 KTIDLALLKATSHTSNNPPSDKYVTFLQSTI-------DTCYGPDTVDAILHRLRVTTDV 84
Query: 89 AVALKTLIVIHRALR---------EVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWD 139
VA K LI++H+ ++ + + + Y + S+ L + +SS +
Sbjct: 85 CVAAKCLILLHKMVKSESGYNGEDSLRNNINHRTLIYTQGGSN-LKLNDLNVNSSRFTRE 143
Query: 140 YSAWVRSYALFLEERLECFRVL 161
+ WV+ Y +L+ L VL
Sbjct: 144 LTPWVQWYKQYLDCYLSIAEVL 165
>sp|P0AES8|GYRB_SHIFL DNA gyrase subunit B OS=Shigella flexneri GN=gyrB PE=3 SV=2
Length = 804
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRK 310
YRR E+L E + I RGER QP ASF QA++ VKE+ RG + ++
Sbjct: 687 YRRICTLGEKLRGLLE--EDAFIERGER----RQPVASFEQALDWLVKESRRGLSIQR 738
>sp|P0AES6|GYRB_ECOLI DNA gyrase subunit B OS=Escherichia coli (strain K12) GN=gyrB PE=1
SV=2
Length = 804
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRK 310
YRR E+L E + I RGER QP ASF QA++ VKE+ RG + ++
Sbjct: 687 YRRICTLGEKLRGLLE--EDAFIERGER----RQPVASFEQALDWLVKESRRGLSIQR 738
>sp|P0AES7|GYRB_ECO57 DNA gyrase subunit B OS=Escherichia coli O157:H7 GN=gyrB PE=3 SV=2
Length = 804
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRK 310
YRR E+L E + I RGER QP ASF QA++ VKE+ RG + ++
Sbjct: 687 YRRICTLGEKLRGLLE--EDAFIERGER----RQPVASFEQALDWLVKESRRGLSIQR 738
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,303,436
Number of Sequences: 539616
Number of extensions: 4291489
Number of successful extensions: 10006
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9931
Number of HSP's gapped (non-prelim): 43
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)