Query 021340
Match_columns 314
No_of_seqs 124 out of 511
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 1.2E-70 2.5E-75 534.1 26.4 288 12-305 1-294 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 3.1E-66 6.8E-71 479.3 23.1 264 33-302 2-280 (280)
3 KOG0980 Actin-binding protein 100.0 2.7E-48 5.9E-53 386.0 12.5 252 33-300 5-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 1.1E-32 2.5E-37 223.3 12.6 117 35-158 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 3.4E-29 7.4E-34 205.7 11.2 126 33-164 1-126 (127)
6 PF01417 ENTH: ENTH domain; I 99.5 8.7E-14 1.9E-18 113.9 11.6 118 32-156 1-120 (125)
7 cd03571 ENTH_epsin ENTH domain 99.4 5.8E-12 1.3E-16 102.5 10.9 115 35-156 2-117 (123)
8 cd00197 VHS_ENTH_ANTH VHS, ENT 99.3 3.1E-11 6.8E-16 97.2 9.6 112 36-155 2-113 (115)
9 KOG2056 Equilibrative nucleosi 98.9 3.5E-09 7.6E-14 98.8 8.6 115 31-152 18-133 (336)
10 cd03572 ENTH_epsin_related ENT 98.5 9.9E-07 2.1E-11 71.6 9.2 112 38-155 5-117 (122)
11 KOG2057 Predicted equilibrativ 98.1 6.2E-06 1.3E-10 76.2 7.2 125 31-160 20-152 (499)
12 cd03569 VHS_Hrs_Vps27p VHS dom 96.0 0.059 1.3E-06 45.0 9.3 78 33-113 3-80 (142)
13 cd03568 VHS_STAM VHS domain fa 96.0 0.05 1.1E-06 45.5 8.8 75 36-113 2-76 (144)
14 cd03565 VHS_Tom1 VHS domain fa 96.0 0.062 1.3E-06 44.8 9.3 77 35-113 2-78 (141)
15 cd03567 VHS_GGA VHS domain fam 96.0 0.064 1.4E-06 44.6 9.2 76 35-113 2-77 (139)
16 PF00790 VHS: VHS domain; Int 95.9 0.063 1.4E-06 44.5 8.8 78 33-113 4-81 (140)
17 smart00288 VHS Domain present 95.6 0.1 2.2E-06 43.0 8.9 75 36-113 2-76 (133)
18 cd03561 VHS VHS domain family; 95.4 0.14 2.9E-06 42.2 8.9 75 36-113 2-76 (133)
19 KOG2199 Signal transducing ada 84.6 5.9 0.00013 38.4 8.7 79 32-113 6-84 (462)
20 KOG1087 Cytosolic sorting prot 67.6 29 0.00063 34.7 8.5 73 35-110 2-74 (470)
21 cd06895 PX_PLD The phosphoinos 61.5 16 0.00036 30.3 4.7 24 280-303 90-122 (140)
22 KOG0414 Chromosome condensatio 52.7 3.8E+02 0.0082 30.1 14.1 204 74-312 360-611 (1251)
23 PF02184 HAT: HAT (Half-A-TPR) 47.9 16 0.00036 22.4 1.9 25 247-271 4-28 (32)
24 PF02042 RWP-RK: RWP-RK domain 43.4 28 0.00061 23.9 2.7 33 234-275 9-41 (52)
25 cd07296 PX_PLD1 The phosphoino 41.4 28 0.0006 28.8 2.9 56 253-309 45-123 (135)
26 KOG1086 Cytosolic sorting prot 40.7 1.2E+02 0.0025 30.2 7.4 81 33-116 7-87 (594)
27 PF08832 SRC-1: Steroid recept 40.4 16 0.00035 27.1 1.3 10 97-106 58-67 (78)
28 cd06878 PX_SNX25 The phosphoin 40.0 71 0.0015 25.9 5.2 45 253-303 56-109 (127)
29 KOG3520 Predicted guanine nucl 38.6 1.5E+02 0.0033 32.9 8.6 69 209-283 448-530 (1167)
30 cd06882 PX_p40phox The phospho 36.2 71 0.0015 25.8 4.6 49 253-302 41-98 (123)
31 KOG1915 Cell cycle control pro 34.6 92 0.002 31.5 5.7 66 177-271 150-215 (677)
32 cd06880 PX_SNX22 The phosphoin 31.5 83 0.0018 24.7 4.2 38 253-302 39-85 (110)
33 PF00787 PX: PX domain; Inter 31.1 1.3E+02 0.0028 22.6 5.2 41 253-302 41-94 (113)
34 cd07280 PX_YPT35 The phosphoin 28.2 98 0.0021 24.6 4.1 43 254-302 46-102 (120)
35 cd06093 PX_domain The Phox Hom 27.8 1.1E+02 0.0024 22.6 4.3 25 279-303 55-89 (106)
36 smart00312 PX PhoX homologous 25.3 1.4E+02 0.0031 22.3 4.5 42 253-303 34-88 (105)
37 cd07297 PX_PLD2 The phosphoino 25.3 2E+02 0.0043 23.6 5.3 32 279-310 81-119 (130)
38 cd06866 PX_SNX8_Mvp1p_like The 25.1 1.6E+02 0.0035 22.9 4.7 23 280-302 54-86 (105)
39 cd06877 PX_SNX14 The phosphoin 24.1 1.1E+02 0.0023 24.5 3.6 41 253-302 50-100 (119)
40 cd06881 PX_SNX15_like The phos 23.1 2.2E+02 0.0047 22.5 5.2 45 253-302 44-98 (117)
41 PF12652 CotJB: CotJB protein; 21.7 3.4E+02 0.0075 20.1 5.9 33 242-276 24-56 (78)
42 PF05674 DUF816: Baculovirus p 21.5 1.9E+02 0.0042 24.6 4.7 66 224-306 69-135 (171)
43 PLN02591 tryptophan synthase 21.0 67 0.0015 29.3 2.1 23 262-285 94-116 (250)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-70 Score=534.05 Aligned_cols=288 Identities=47% Similarity=0.817 Sum_probs=270.4
Q ss_pred HHHhhhhcccchhhhhccCCCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHH
Q 021340 12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91 (314)
Q Consensus 12 ~~~g~~kd~~s~~~a~~~~~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~ 91 (314)
++.|++||++|+++|+|.+.++++++||+|||+|++.|||+|||+.|+.+|..++ +++++|+.+|.+|+.+|+||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4689999999999999998889999999999999999999999999999998874 68999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhccccccCC--
Q 021340 92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDR-- 169 (314)
Q Consensus 92 ~K~LillH~llr~G~~~~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d~~~~~-- 169 (314)
+|+|||+|+||++|+++|.+++.. .++.|++++|.|++++.+|+|+.|||+|++||++|+.+|+.+++|++..+
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~----~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLS----RNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHh----cccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 999999999999999999877643 34789999999999888999999999999999999999999999987643
Q ss_pred ---CCCCCCC-hHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 021340 170 ---PRTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD 245 (314)
Q Consensus 170 ---~~~~~l~-~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~d 245 (314)
...+++. ++.+|+.++.||.|||++++|+|.+.+.+|.++++||.+|++|+++||..+|+||++|||+||+|+++|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 3344444 778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHhCCCC
Q 021340 246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRG 305 (314)
Q Consensus 246 a~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~~~~~ 305 (314)
|.++++||+||.+|+++|.+||++||++|+.++.+||+|+++|.+++++|||||++.+.+
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~ 294 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGG 294 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999744
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=3.1e-66 Score=479.33 Aligned_cols=264 Identities=45% Similarity=0.803 Sum_probs=214.2
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+++++||+|||+|+++|||+|||++|+.+||+ +.++++++|++.+|++.++||+|+||+||++|+|||+|||+|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~---~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS---PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST---TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC---CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 57999999999999999999999999999998 247899999999999998999999999999999999999999888
Q ss_pred HHHhhhcCCCcccccccCC--CCCCCCCchhHHHHHHHHHHHHHHHHhhhhccc---cccCC---------CCC-CCCCh
Q 021340 113 VINYGRSRSHMLNMAHFKD--DSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDR---------PRT-KDLDT 177 (314)
Q Consensus 113 ~~~~~~~~~~~l~l~~f~d--~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d---~~~~~---------~~~-~~l~~ 177 (314)
+.++ +.+.+++.++|+ .+++.+|+|+.|||+|++||++|+.||++++.+ ++... ... ..+++
T Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRY---NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHT---T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHc---ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 7665 335667777766 566778999999999999999999999999877 44321 112 36678
Q ss_pred HHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 021340 178 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAG 257 (314)
Q Consensus 178 ~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf~ 257 (314)
+++|+.++.+|.+++++++|+|.+++++|+|+++||.+||+||++||+.+++||++|+++||+|+++||.+++++|+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCCccccCCCCCChhhHHHHHHHHHhC
Q 021340 258 QQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302 (314)
Q Consensus 258 ~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~~ 302 (314)
+|+++|++||++|++++++++++||+|+++||+|+++||||++|.
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~~ 280 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRDP 280 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999889999999999999999999973
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=2.7e-48 Score=386.00 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=218.6
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
.++..||.|||+.+|+|||+||||+||.+||++++ +.+||+..+|++..++.+.+||+|+++||+||||||+++.+
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~e 80 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEE 80 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHH
Confidence 57889999999999999999999999999999987 45899999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcc-----ccccC--------CCCCCCCChH-
Q 021340 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY-----DIETD--------RPRTKDLDTA- 178 (314)
Q Consensus 113 ~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~-----d~~~~--------~~~~~~l~~~- 178 (314)
..+| ++++.+++.+|++.+ .|||.+|+.|++||.+|+.||.+++. ++..+ -++.++++++
T Consensus 81 s~r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvdm 154 (980)
T KOG0980|consen 81 SQRY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVDM 154 (980)
T ss_pred HHHH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHHH
Confidence 8877 667889999998643 79999999999999999999999752 22221 1344556654
Q ss_pred -HHHhhHHHHHHHHHHHhcCccCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 021340 179 -ELLEHLPALQLLLFRVLGCQPQGA-AVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (314)
Q Consensus 179 -~ll~~l~~lq~lid~ll~~~~~~~-~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf 256 (314)
+++|.+..||..|++.++..+..+ .++++|+++|+++||+|+++||++++.++-+|- .--++|+++++ ..||
T Consensus 155 md~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLH----s~vp~dtLegh--RdRf 228 (980)
T KOG0980|consen 155 MDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLH----SQVPPDTLEGH--RDRF 228 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHH----cCCCHHHhhhH--HHHH
Confidence 778899999999999998665554 458899999999999999999999987654432 22458988877 6999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCC-ccccCCCCCChhhHH--HHHHHHH
Q 021340 257 GQQAERLSEFYEVCKSLDIGRG-ERFIKIEQPPASFLQ--AMEEYVK 300 (314)
Q Consensus 257 ~~q~~~L~~Fy~~c~~l~~~~~-~~iP~l~~~p~~~l~--~Lee~l~ 300 (314)
..||++|++||+.|++++|++. ++||.||..||||+. ++++|+.
T Consensus 229 ~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 229 HTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 9999999999999999999998 599999999999999 8999988
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=100.00 E-value=1.1e-32 Score=223.26 Aligned_cols=117 Identities=43% Similarity=0.718 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~~ 114 (314)
+++||.|||+|+++|||+|||+.|+.+|+++. .++.+++++|.+|+.. +||+|+||+|+++|+|||+|+|+|.++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999999853 5789999999999986 99999999999999999999999988765
Q ss_pred HhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 021340 115 NYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158 (314)
Q Consensus 115 ~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~ 158 (314)
.+ ..+|++++|.+.+++.+++|+.|||.|++||++|+.||
T Consensus 78 ~~----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 43 46899999998876678999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.96 E-value=3.4e-29 Score=205.75 Aligned_cols=126 Identities=35% Similarity=0.516 Sum_probs=111.2
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
++++++|.|||+++++|||+|||++|+.+|++++ .++.+++..|.+|+..+++|+|++|+|+++|+||++|++.+..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4689999999999999999999999999999873 47889999999999877799999999999999999999988766
Q ss_pred HHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhccc
Q 021340 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYD 164 (314)
Q Consensus 113 ~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~~~~~~~~d 164 (314)
...+ ...+++|++|++. ++.++|+|.|||.|++||++++.++..++.+
T Consensus 79 ~~~~---~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~e 126 (127)
T smart00273 79 ALRN---RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKEE 126 (127)
T ss_pred HHHh---hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhcc
Confidence 5433 4468999999986 4578999999999999999999999886543
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.53 E-value=8.7e-14 Score=113.88 Aligned_cols=118 Identities=23% Similarity=0.274 Sum_probs=92.1
Q ss_pred CchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHhcCCcch
Q 021340 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL--SKTHNWAVALKTLIVIHRALREVDPTF 109 (314)
Q Consensus 32 ~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl--~~t~~w~v~~K~LillH~llr~G~~~~ 109 (314)
++++|.-|.+||+.+++||..+++..|...|+++ .+...++..|.+|| ...++|.+++|+|.++|.|++.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4788999999999999999999999999999986 35677888999999 346999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 110 ~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
..++..+.. .+-.+.+|.. .++.+.+.+.-||..|+-+.+-+.
T Consensus 78 ~~~~~~~~~---~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDHID---IIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHTHH---HHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 888754432 3556677765 223567888999999999877654
No 7
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.37 E-value=5.8e-12 Score=102.51 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~-t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
.|+-|..|||.++++|..+++..|...|++. .++..++..|.+||.. .++|.+++|+|++++.|++.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778999999999999999999999999985 3678899999999974 47999999999999999999999998776
Q ss_pred HHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021340 114 INYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (314)
Q Consensus 114 ~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl~ 156 (314)
..++. .+-.|..|.-- ...+.+.|..||.-|+-+.+-+.
T Consensus 79 r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 79 RENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred HHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHhC
Confidence 44322 12334455421 12346788999998888766543
No 8
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.26 E-value=3.1e-11 Score=97.19 Aligned_cols=112 Identities=25% Similarity=0.279 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 021340 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (314)
Q Consensus 36 ~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~~~ 115 (314)
++.|.|||+++..+|+.+++.+|...+... + .+...++.+|.+|+.. +||.|++|+|.++|.|+..|++.|..++
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-~-~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i-- 76 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET-N-VGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEV-- 76 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-C-ccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHH--
Confidence 578999999999999999999999999765 2 4678899999999974 6999999999999999999999887654
Q ss_pred hhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 021340 116 YGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (314)
Q Consensus 116 ~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~~rl 155 (314)
+++....++..| +.....+.+.+..||.++.+|.+..
T Consensus 77 --~~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 77 --ASNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred --HHhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 333334444444 2222344567899999999998753
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.92 E-value=3.5e-09 Score=98.80 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhcCCcch
Q 021340 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (314)
Q Consensus 31 ~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~-t~~w~v~~K~LillH~llr~G~~~~ 109 (314)
++++.+..|.-||+.+++.|..+++-.|...|++. ..+.++|..|++|+.. .++|++++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 47899999999999999999999999999999986 4788999999999974 5899999999999999999999988
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHH
Q 021340 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLE 152 (314)
Q Consensus 110 ~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL~ 152 (314)
.+++..++. .+-.|..|.-- ...+.+.|..||.-++-|.
T Consensus 95 ~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~ 133 (336)
T KOG2056|consen 95 VDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELL 133 (336)
T ss_pred HHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHH
Confidence 776533222 11223344311 1234677888998888773
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.48 E-value=9.9e-07 Score=71.56 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=87.8
Q ss_pred HHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Q 021340 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYG 117 (314)
Q Consensus 38 av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~~~~~ 117 (314)
.|.+||+.++.||.---..+|...|+.+. ..+.+++..|.+||.+ ++..|-+|+|-++-.|.+.|++.|...+.+..
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 57899999998888777789999999863 4677899999999985 67777799999999999999999876654443
Q ss_pred hcCCCcccccccCCCCCC-CCCchhHHHHHHHHHHHHHH
Q 021340 118 RSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERL 155 (314)
Q Consensus 118 ~~~~~~l~l~~f~d~s~~-~~~~~~~~Ir~Y~~yL~~rl 155 (314)
. .+-.+.+|+....+ .+++.+..||.=|+=|..-+
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 2 35566678764444 46778899998888776544
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.14 E-value=6.2e-06 Score=76.20 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=94.5
Q ss_pred CCchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHhcCCcc
Q 021340 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLS--KTHNWAVALKTLIVIHRALREVDPT 108 (314)
Q Consensus 31 ~~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~--~t~~w~v~~K~LillH~llr~G~~~ 108 (314)
.+++.+.-|+.||+-|++.|.--.+.+|-.+|..-. -.++.+++..|+.|+- ...+|.-++|+||+|..||+.|++.
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999986521 1367888999999974 3469999999999999999999999
Q ss_pred hHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHH------HHHHHHhhh
Q 021340 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL------EERLECFRV 160 (314)
Q Consensus 109 ~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL------~~rl~~~~~ 160 (314)
|+++...+.- .-+-|+--+|-|. .+.+.|..||.-.+-| +++|+.-|+
T Consensus 99 ~VqeAREh~Y-dLR~LEnYhfiDE---hGKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAY-DLRRLENYHFIDE---HGKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHH-HHHhhhhccchhh---hCccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 9877543322 1112222345563 3467888999988887 445555544
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=96.02 E-value=0.059 Score=44.98 Aligned_cols=78 Identities=28% Similarity=0.396 Sum_probs=65.7
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||+....-|+--.+-.|........ .+..+++++|.+|+. .+|..|++-+|.++.-++..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5688999999999888899998888877776542 356889999999996 5899999999999999999977777555
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 4
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=96.01 E-value=0.05 Score=45.53 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 36 ~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
+..|.|||+....-|+--.+-.|-...... + .+...++.+|.+|+. .+|..|++.+|.++--++..+...|..++
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 578999999999889988888877776654 2 466889999999997 58999999999999999999988886655
No 14
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=96.00 E-value=0.062 Score=44.80 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
++..|.|||+....-|+--.+-+|-...... ..+...++.+|.+|+...+|..|++-+|.++--++..+...|..++
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~--~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINET--EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4678999999999889888888887777543 2466889999999997557999999999999999999988886655
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.96 E-value=0.064 Score=44.62 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
++.-|.|||+....-|+--.+-.|....... | .+...++.+|.+|+. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6788999999999999999998888887654 3 356789999999997 68999999999999999999887776555
No 16
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.86 E-value=0.063 Score=44.53 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=63.8
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
+.++..|.|||++...-|+-..+-.|....... ..+..+++.+|.+|+.. +|..|.+-+|.++.-++..+.+.|..+
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 678899999999998888888888888877665 24668899999999974 899999999999999999998877655
Q ss_pred H
Q 021340 113 V 113 (314)
Q Consensus 113 ~ 113 (314)
+
T Consensus 81 v 81 (140)
T PF00790_consen 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.58 E-value=0.1 Score=43.01 Aligned_cols=75 Identities=28% Similarity=0.304 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 36 ~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
+..|.|||+....-|+--.+-.|....... + .+...++.+|.+|+. .+|..|++.+|.++--++..+.+.|..++
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~-~-~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINST-P-DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 567999999998889988888887777554 2 456889999999997 68999999999999999999877776554
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.36 E-value=0.14 Score=42.17 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHHH
Q 021340 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (314)
Q Consensus 36 ~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~~ 113 (314)
+..|.|||+....-|+-.-+-+|........ .+..+++.+|.+|+. .+|..|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4678999999888888888888877776552 456889999999997 57999999999999999999988775554
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.60 E-value=5.9 Score=38.36 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=57.2
Q ss_pred CchHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHH
Q 021340 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (314)
Q Consensus 32 ~~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~ 111 (314)
...++..|.|||+...+.=+=.++-.+-...... | ..-..|+.+|.+|+. +++.-|++-+|.++.-+.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~-~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-P-DGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-C-cccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4678899999999887765555554444433332 2 234789999999996 689999999999999888765544544
Q ss_pred HH
Q 021340 112 EV 113 (314)
Q Consensus 112 ~~ 113 (314)
++
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 43
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.60 E-value=29 Score=34.72 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchH
Q 021340 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFH 110 (314)
Q Consensus 35 l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~ 110 (314)
+...|-|||+....-|+=-..-+|-........ +..+.+++|.+|++. ++..|++=+|.+|--|+......|.
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~--~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEG--GPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCcc--CcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 457899999998888876544443333322222 336789999999974 5568888899999988877555554
No 21
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=61.46 E-value=16 Score=30.29 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=17.5
Q ss_pred cccCCCCCC-----hhhHH----HHHHHHHhCC
Q 021340 280 RFIKIEQPP-----ASFLQ----AMEEYVKEAP 303 (314)
Q Consensus 280 ~iP~l~~~p-----~~~l~----~Lee~l~~~~ 303 (314)
++|.||..| +.+++ .||+||+.--
T Consensus 90 ~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~LL 122 (140)
T cd06895 90 RLPSLPALPDILVSEEQLDSRKKQLENYLQNLL 122 (140)
T ss_pred cCCCCCCccccccCHHHHHHHHHHHHHHHHHHH
Confidence 578887666 55666 7999999643
No 22
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.66 E-value=3.8e+02 Score=30.09 Aligned_cols=204 Identities=19% Similarity=0.162 Sum_probs=107.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcc--hHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHH
Q 021340 74 CIHALAKRLSKTHNWAVALKTLIVIHRALREVDPT--FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151 (314)
Q Consensus 74 ~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~--~~~~~~~~~~~~~~~l~l~~f~d~s~~~~~~~~~~Ir~Y~~yL 151 (314)
++..|..|+. .-+.-|-.|.|-++|++.+.-... ...++..-.- +.. .|-+..||.||--|
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~--------grl--------~DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAI--------GRL--------EDKSSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHh--------ccc--------ccccHHHHHHHHHH
Confidence 5677888886 578999999999999999885432 2333332111 122 23457888888777
Q ss_pred HHHHHHhhh----hcccc-----cc-------CCCC-----------CCCCChHHHHhhHHHHH----HHHHHHhcCcc-
Q 021340 152 EERLECFRV----LKYDI-----ET-------DRPR-----------TKDLDTAELLEHLPALQ----LLLFRVLGCQP- 199 (314)
Q Consensus 152 ~~rl~~~~~----~~~d~-----~~-------~~~~-----------~~~l~~~~ll~~l~~lq----~lid~ll~~~~- 199 (314)
.-.+--... ++.+. +. +-++ ++.....++++..+.-. .+......|++
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 665442211 11110 00 0001 11111122233222222 11111122211
Q ss_pred -------CCCc-chhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021340 200 -------QGAA-VHNFV-IQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 270 (314)
Q Consensus 200 -------~~~~-~~n~~-~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf~~q~~~L~~Fy~~c 270 (314)
..+. .+|++ -+.+++--.+|.+..-+.+.+++-.+.+.+|.=...|..++. .||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~I--------------dfl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAI--------------DFLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHH
Confidence 1111 13333 345677777999999999999888887777776777766665 466678
Q ss_pred hcCCCcCC---c--cccCCCCCChhhHHHHHHHHHhCCCCCCCCccC
Q 021340 271 KSLDIGRG---E--RFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQ 312 (314)
Q Consensus 271 ~~l~~~~~---~--~iP~l~~~p~~~l~~Lee~l~~~~~~~~~~~~~ 312 (314)
+.+|+... + =+|-+=...++ +.|++.++-+..-||.|+
T Consensus 569 ~~F~I~gae~~irkMl~LVWskd~~----i~e~v~~ayk~l~~~~~~ 611 (1251)
T KOG0414|consen 569 KQFGIDGAEFGIRKMLPLVWSKDKE----IREAVENAYKQLYFRPDG 611 (1251)
T ss_pred HHhCCCcHHHHHHHHhhhhhCCCcc----HHHHHHHHHHHHhccCCC
Confidence 87776433 1 13322233333 445555555555555554
No 23
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.86 E-value=16 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021340 247 LKALDIYRRAGQQAERLSEFYEVCK 271 (314)
Q Consensus 247 ~~~l~iy~rf~~q~~~L~~Fy~~c~ 271 (314)
.+|=.||.||...+..++.+...|+
T Consensus 4 dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3455789999999999998888875
No 24
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=43.43 E-value=28 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=24.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021340 234 LVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDI 275 (314)
Q Consensus 234 lLe~~fem~~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~ 275 (314)
-|..||.|+..||.+.|++-....+ ..|+.+|+
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI 41 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGI 41 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCC
Confidence 3678999999999998875433333 35888885
No 25
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=41.42 E-value=28 Score=28.82 Aligned_cols=56 Identities=9% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-------C-------cCCccccCCCCCChhhHH---------HHHHHHHhCCCCCCCC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLD-------I-------GRGERFIKIEQPPASFLQ---------AMEEYVKEAPRGSTFR 309 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~-------~-------~~~~~iP~l~~~p~~~l~---------~Lee~l~~~~~~~~~~ 309 (314)
|+.|.+.+.+|..| ..--.+- . ...-++|.||.-|.+.++ .||+||++--.-...|
T Consensus 45 y~~F~~Lh~~L~~~-~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~R 123 (135)
T cd07296 45 FKHFQELHRELLRY-KAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYR 123 (135)
T ss_pred hHHHHHHHHHHHhc-CCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhc
Confidence 67788888888772 2211111 1 011247778877777554 4999999654433343
No 26
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.65 E-value=1.2e+02 Score=30.23 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=58.0
Q ss_pred chHHHHHHHHhcCCCCCCcHhhHHHHHHHhcCCCCCCcHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcCCcchHHH
Q 021340 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (314)
Q Consensus 33 ~~l~~av~KATs~~~~pPK~Khv~~ii~~t~~~~~~~~~~~~~~~L~~Rl~~t~~w~v~~K~LillH~llr~G~~~~~~~ 112 (314)
..++.=+.|||+....--+-|++..++...... + .+..-.+|.|+-.++....| =|+-+|.++..+|+.|...|-++
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~e 83 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHEE 83 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHHH
Confidence 568889999999887444556666666555543 2 22344678888888754444 67889999999999999888777
Q ss_pred HHHh
Q 021340 113 VINY 116 (314)
Q Consensus 113 ~~~~ 116 (314)
+-+|
T Consensus 84 vgkf 87 (594)
T KOG1086|consen 84 VGKF 87 (594)
T ss_pred HHHH
Confidence 6554
No 27
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=40.44 E-value=16 Score=27.12 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.5
Q ss_pred HHHHHHhcCC
Q 021340 97 VIHRALREVD 106 (314)
Q Consensus 97 llH~llr~G~ 106 (314)
+||||||+|+
T Consensus 58 ILHrLLQng~ 67 (78)
T PF08832_consen 58 ILHRLLQNGN 67 (78)
T ss_dssp HHHHHHHCS-
T ss_pred HHHHHHhcCC
Confidence 6899999994
No 28
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=40.03 E-value=71 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccC-----CCCCChhhHH----HHHHHHHhCC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIK-----IEQPPASFLQ----AMEEYVKEAP 303 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~-----l~~~p~~~l~----~Lee~l~~~~ 303 (314)
|.-|...+.+|+++|...+. +.+|. +....+.+++ .||+||+.--
T Consensus 56 YsdF~~Lh~~Lk~~~~~~~~------~~lP~ppKk~~~~~~~~fle~Rr~~Le~YLq~ll 109 (127)
T cd06878 56 LSEFHDLHRKLKECSSWLKK------VELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFIL 109 (127)
T ss_pred HHHHHHHHHHHHHHCCCccc------cCCCCCCccccccCCHHHHHHHHHHHHHHHHHHh
Confidence 66778888889888864322 22221 2234667777 6999998643
No 29
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=38.56 E-value=1.5e+02 Score=32.95 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcCC
Q 021340 209 IQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAE--------------RLSEFYEVCKSLD 274 (314)
Q Consensus 209 ~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf~~q~~--------------~L~~Fy~~c~~l~ 274 (314)
-..+|...-+++..|++.|.+ ||..+|.-. .++...+.|-.|+.+.. +...|+..|.+--
T Consensus 448 f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe--~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p 521 (1167)
T KOG3520|consen 448 FLQRLKERRKESLVVIKRIGD----LLLDQFSGE--NAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNP 521 (1167)
T ss_pred HHHHHHHHHHhccchHHHHHH----HHHHHcCch--HHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcch
Confidence 345666666666666666655 455567653 34444456777776544 3445666555555
Q ss_pred CcCCccccC
Q 021340 275 IGRGERFIK 283 (314)
Q Consensus 275 ~~~~~~iP~ 283 (314)
.++.+.+|+
T Consensus 522 ~cRRL~lkd 530 (1167)
T KOG3520|consen 522 VCRRLGLKD 530 (1167)
T ss_pred HHHhhcchH
Confidence 566655554
No 30
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=36.19 E-value=71 Score=25.76 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCC-----CChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ-----PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~-----~p~~~l~----~Lee~l~~~ 302 (314)
|.-|.+...+|.+.|-..+..+ .+...+|.||. ....+++ .||+||+.-
T Consensus 41 YseF~~L~~~L~~~fp~~~~~~-~~~~~lP~lP~k~~~~~~~~~~e~Rr~~Le~yl~~L 98 (123)
T cd06882 41 YRQFFALQSKLEERFGPEAGSS-AYDCTLPTLPGKIYVGRKAEIAERRIPLLNRYMKEL 98 (123)
T ss_pred HHHHHHHHHHHHHhCCcccccC-CCCCccCCCCCCeecCccHHHHHHHHHHHHHHHHHH
Confidence 5566777888888776544442 22234676664 1124554 799999843
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.59 E-value=92 Score=31.45 Aligned_cols=66 Identities=18% Similarity=0.346 Sum_probs=45.3
Q ss_pred hHHHHhhHHHHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 021340 177 TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (314)
Q Consensus 177 ~~~ll~~l~~lq~lid~ll~~~~~~~~~~n~~~~~al~lli~Ds~~lY~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf 256 (314)
++++|..++..-++..+-+.++|...+ +.++.. ||+-..+-.+|=.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqa--------------------W~sfI~---------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQA--------------------WLSFIK---------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHH--------------------HHHHHH---------HHHHhhHHHHHHHHHHHH
Confidence 456777777777777788888776422 111211 566666666777788888
Q ss_pred HHHHHHHHHHHHHHh
Q 021340 257 GQQAERLSEFYEVCK 271 (314)
Q Consensus 257 ~~q~~~L~~Fy~~c~ 271 (314)
.-.+.+++.|...++
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 888888888877776
No 32
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=31.51 E-value=83 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCC-----CChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ-----PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~-----~p~~~l~----~Lee~l~~~ 302 (314)
|.-|.+.++.|.+.|. .|.+|+ ..+++++ .||+|++..
T Consensus 39 YseF~~Lh~~L~~~~~------------~p~~P~K~~~~~~~~~ie~Rr~~Le~yL~~l 85 (110)
T cd06880 39 YSEFHALHKKLKKSIK------------TPDFPPKRVRNWNPKVLEQRRQGLEAYLQGL 85 (110)
T ss_pred HHHHHHHHHHHHHHCC------------CCCCCCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 4556667777766542 233332 4555666 799999853
No 33
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=31.06 E-value=1.3e+02 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCCC---------hhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPP---------ASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~p---------~~~l~----~Lee~l~~~ 302 (314)
|.-|...+++|.+.+. ...+|.+|... +++++ .||+||+..
T Consensus 41 y~dF~~L~~~L~~~~~---------~~~~p~~P~~~~~~~~~~~~~~~~~~R~~~L~~yL~~l 94 (113)
T PF00787_consen 41 YSDFYELHRKLKKRFP---------SRKLPPFPPKQWFSNSRNLDPEFIEERRQALEKYLQSL 94 (113)
T ss_dssp HHHHHHHHHHHHHHHT---------TSGSTSSSTSSSSSSSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhc---------ccccccCCccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776 23455555443 34444 788888854
No 34
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=28.20 E-value=98 Score=24.60 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCccccCCCC----------CChhhHH----HHHHHHHhC
Q 021340 254 RRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ----------PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 254 ~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~----------~p~~~l~----~Lee~l~~~ 302 (314)
.-|....++|.+.|..+. ...+|.||. -.+++++ +||+|++.-
T Consensus 46 seF~~L~~~L~~~~p~~~------~~~~P~lP~K~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l 102 (120)
T cd07280 46 SEFVQLREALLDEFPRHK------RNEIPQLPPKVPWYDSRVNLNKAWLEKRRRGLQYFLNCV 102 (120)
T ss_pred HHHHHHHHHHHHHCcccc------cCcCCCCCCCcccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 334555555555554322 234676664 3355565 789998843
No 35
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=27.76 E-value=1.1e+02 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=16.0
Q ss_pred ccccCCCCCCh------hhHH----HHHHHHHhCC
Q 021340 279 ERFIKIEQPPA------SFLQ----AMEEYVKEAP 303 (314)
Q Consensus 279 ~~iP~l~~~p~------~~l~----~Lee~l~~~~ 303 (314)
..+|.||+.+. +.++ .|++|++..-
T Consensus 55 ~~~p~lP~k~~~~~~~~~~~~~R~~~L~~yl~~l~ 89 (106)
T cd06093 55 VILPPLPPKKLFGNLDPEFIEERRKQLEQYLQSLL 89 (106)
T ss_pred CccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 45777777653 3444 6888888543
No 36
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=25.30 E-value=1.4e+02 Score=22.33 Aligned_cols=42 Identities=12% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCCC---------ChhhHH----HHHHHHHhCC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQP---------PASFLQ----AMEEYVKEAP 303 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~~---------p~~~l~----~Lee~l~~~~ 303 (314)
|.-|...+++|.+-|. ...+|.+|.. .+++++ .||+|++.--
T Consensus 34 ysdF~~L~~~L~~~~~---------~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~ 88 (105)
T smart00312 34 YSDFLELHSKLKKHFP---------RRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLL 88 (105)
T ss_pred HHHHHHHHHHHHHHCc---------CCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555443 2345655542 344555 6888988643
No 37
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=25.26 E-value=2e+02 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=22.1
Q ss_pred ccccCCCCCChhh-------HHHHHHHHHhCCCCCCCCc
Q 021340 279 ERFIKIEQPPASF-------LQAMEEYVKEAPRGSTFRK 310 (314)
Q Consensus 279 ~~iP~l~~~p~~~-------l~~Lee~l~~~~~~~~~~~ 310 (314)
-++|.||+.|... ...||+||+.--+-..+|.
T Consensus 81 ~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~~YRn 119 (130)
T cd07297 81 EEMPSLPGTDREASRRTASKPKYLENYLNNLLENSFYRN 119 (130)
T ss_pred CcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcchhhcC
Confidence 4799999888543 1269999997655555554
No 38
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=25.13 E-value=1.6e+02 Score=22.88 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=15.9
Q ss_pred cccCCCC------CChhhHH----HHHHHHHhC
Q 021340 280 RFIKIEQ------PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 280 ~iP~l~~------~p~~~l~----~Lee~l~~~ 302 (314)
.+|.||+ ..+++++ .||+||+.-
T Consensus 54 ~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l 86 (105)
T cd06866 54 MVPALPPKRIGGSADREFLEARRRGLSRFLNLV 86 (105)
T ss_pred cCCCCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4676665 4566676 799999853
No 39
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=24.09 E-value=1.1e+02 Score=24.55 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCC------CChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ------PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~------~p~~~l~----~Lee~l~~~ 302 (314)
|.-|.....+|.+.|..+ .+|.||+ ..+.+++ .||+||+.-
T Consensus 50 YsdF~~L~~~L~~~~~~~---------~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l 100 (119)
T cd06877 50 YNEFYVLESKLTEFHGEF---------PDAPLPSRRIFGPKSYEFLESKREIFEEFLQKL 100 (119)
T ss_pred hHHHHHHHHHHHHHCCCC---------CCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 455666666666654322 2344443 5577777 799999854
No 40
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=23.05 E-value=2.2e+02 Score=22.53 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCccccCCCC------CChhhHH----HHHHHHHhC
Q 021340 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ------PPASFLQ----AMEEYVKEA 302 (314)
Q Consensus 253 y~rf~~q~~~L~~Fy~~c~~l~~~~~~~iP~l~~------~p~~~l~----~Lee~l~~~ 302 (314)
|.-|...+++|.+-|.... ....+|.||. -.+++|+ .||+||+.-
T Consensus 44 YsdF~~L~~~L~~~~~~~~-----~~~~~P~lP~K~~~g~~~~~~IeeRr~~Le~fL~~i 98 (117)
T cd06881 44 YSDFKKLHRELSRLHKQLY-----LSGSFPPFPKGKYFGRFDAAVIEERRQAILELLDFV 98 (117)
T ss_pred HHHHHHHHHHHHHHhhhcc-----ccCcCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445556666665543221 1123465554 4567777 789998854
No 41
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.67 E-value=3.4e+02 Score=20.11 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021340 242 QRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIG 276 (314)
Q Consensus 242 ~~~da~~~l~iy~rf~~q~~~L~~Fy~~c~~l~~~ 276 (314)
..++..+||+.|+.+.++..++.+=|+.. .|-.
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~--yGPL 56 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKR--YGPL 56 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH--hCCC
Confidence 67888999999999999999999988765 5543
No 42
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=21.47 E-value=1.9e+02 Score=24.62 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcCCccccCCCCCChhhHHHHHHHHHhC
Q 021340 224 YQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC-KSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302 (314)
Q Consensus 224 Y~~~~~~v~~lLe~~fem~~~da~~~l~iy~rf~~q~~~L~~Fy~~c-~~l~~~~~~~iP~l~~~p~~~l~~Lee~l~~~ 302 (314)
|..++.|+..+. |.+...-|.+-+.-| +.|++.+ ++|+ ++ -|+++..|-.+|+.--|+|++.
T Consensus 69 yKnfnRr~~lIa---~k~~lnk~k~~f~~y----------k~~~e~alkrL~---~i-npdlksSP~amLqhYnecle~l 131 (171)
T PF05674_consen 69 YKNFNRRILLIA---FKFILNKSKDYFPNY----------KSFIETALKRLD---KI-NPDLKSSPRAMLQHYNECLENL 131 (171)
T ss_pred hhhhhhHHHHHH---HHHHHhhhhHhhhhh----------HHHHHHHHHHHh---cC-CCccccCHHHHHHHHHHHHHhc
Confidence 667777755443 444334444433333 4445443 3343 33 4999999999999999999866
Q ss_pred CCCC
Q 021340 303 PRGS 306 (314)
Q Consensus 303 ~~~~ 306 (314)
+.+.
T Consensus 132 d~p~ 135 (171)
T PF05674_consen 132 DNPK 135 (171)
T ss_pred cCCC
Confidence 6543
No 43
>PLN02591 tryptophan synthase
Probab=20.98 E-value=67 Score=29.35 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCcCCccccCCC
Q 021340 262 RLSEFYEVCKSLDIGRGERFIKIE 285 (314)
Q Consensus 262 ~L~~Fy~~c~~l~~~~~~~iP~l~ 285 (314)
-+.+|++.|++.|+..-+ +|+||
T Consensus 94 G~~~F~~~~~~aGv~Gvi-ipDLP 116 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLV-VPDLP 116 (250)
T ss_pred HHHHHHHHHHHcCCCEEE-eCCCC
Confidence 667889999999876555 78775
Done!